Tue May 16 08:29:06 UTC 2023 I: starting to build atropos/bookworm/armhf on jenkins on '2023-05-16 08:28' Tue May 16 08:29:06 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_25/2415/console.log Tue May 16 08:29:06 UTC 2023 I: Downloading source for bookworm/atropos=1.1.31+dfsg-3 --2023-05-16 08:29:06-- http://cdn-fastly.deb.debian.org/debian/pool/main/a/atropos/atropos_1.1.31%2bdfsg-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2249 (2.2K) [text/prs.lines.tag] Saving to: ‘atropos_1.1.31+dfsg-3.dsc’ 0K .. 100% 301M=0s 2023-05-16 08:29:06 (301 MB/s) - ‘atropos_1.1.31+dfsg-3.dsc’ saved [2249/2249] Tue May 16 08:29:06 UTC 2023 I: atropos_1.1.31+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: atropos Binary: atropos Architecture: any Version: 1.1.31+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/jdidion/atropos Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/atropos Vcs-Git: https://salsa.debian.org/med-team/atropos.git Testsuite: autopkgtest Testsuite-Triggers: python3-all, python3-pytest Build-Depends: debhelper-compat (= 13), dh-python, cython3, python3-all-dev, python3-setuptools, python3-setuptools-scm, python3-wheel, python3-loguru, python3-xphyle, python3-pytest , python3-jinja2 , python3-pysam Package-List: atropos deb science optional arch=any Checksums-Sha1: 63d72403dc96e61ff368e989a3dd21f31b884846 3115688 atropos_1.1.31+dfsg.orig.tar.xz bde59085620b333502167548ec58704cd33f4cfc 6380 atropos_1.1.31+dfsg-3.debian.tar.xz Checksums-Sha256: d59fb286c59461cb87ca9c86aed09f3a108f92ba800a6de424a3dd65f88f704b 3115688 atropos_1.1.31+dfsg.orig.tar.xz a91895654074cb38388ab67ab1ea273fa8be72ec44567d96937e0a5aae2961c8 6380 atropos_1.1.31+dfsg-3.debian.tar.xz Files: a6e70957ca15bb86d62819e8d9926846 3115688 atropos_1.1.31+dfsg.orig.tar.xz 025a3cdf44ecf9d93a65b198b9bbef17 6380 atropos_1.1.31+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmJLLJwSHG5pbGVzaEBk ZWJpYW4ub3JnAAoJEAC650s0M2nx+G4QAKeCs58iKOKU4X4Hlv0BpfQ4hO52yqwd 7h4DQwosPsRQCXukPQESgooedv7doqvEWvDolJvyCgAeeiU3BSM0WQFMe+ErR1Ya Z1Zp4sHSRkJxNwtKWuW7uyEFYbQxZqyW7bu99W68xk6t50E7AzdfhshPOlUxIMXo xh3JoEgFGN3PDbibNxT/X/K/SZSlcCgzKeg0X+WjQLOdw+XhCIFmlUFHiuieSD+Z ve1nyCsxAnuFfEB6tJjDu7g11jFlzmXVpOVoFR3Pjgmvkq8m0l91e1HRtTqMcrPn 9j2TqzCUVe53ZeSogF/RzgOVYGvU7kWix3Wh2g+13x6Aq6Yuq3ZOkBQPvvfBuyCk LOIHAO+ybjI+mDL/yiq7MDjfoHUSM6cJC1Rd/b53FbFl0SuQY3HClSHdJ2sN1Klk tsDU0mzomQR7KumchN52mAMBknIy3xArlfnwhcJCa/rpqPJ2kclQ7WfXZm7CYhlv IiWLUzg+RdAd+PCDXsZadm7A75bHMtXm2e6EuE+PRT3ci0Q1PsfSPzjPIsrPzmTt 0uzLQj3igATIptBpm4S3Rtt7Nz3JNr0WbO9qQo88VtPz4Vy2eGTNQ6R8lZHEH+k3 oP3irrrgj++8ZIg89S32uuTDn1ZZtCkcSvlNSfpgtgHnGN7ZE31HKyCbl/1+Ltxj 0v5XFGx9AB4V =X2rL -----END PGP SIGNATURE----- Tue May 16 08:29:06 UTC 2023 I: Checking whether the package is not for us Tue May 16 08:29:06 UTC 2023 I: Starting 1st build on remote node virt32c-armhf-rb.debian.net. Tue May 16 08:29:06 UTC 2023 I: Preparing to do remote build '1' on virt32c-armhf-rb.debian.net. Tue May 16 08:32:25 UTC 2023 I: Deleting $TMPDIR on virt32c-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 15 20:29:12 -12 2023 I: pbuilder-time-stamp: 1684225752 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [atropos_1.1.31+dfsg-3.dsc] I: copying [./atropos_1.1.31+dfsg.orig.tar.xz] I: copying [./atropos_1.1.31+dfsg-3.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Apr 4 05:36:28 2022 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./atropos_1.1.31+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting atropos in atropos-1.1.31+dfsg dpkg-source: info: unpacking atropos_1.1.31+dfsg.orig.tar.xz dpkg-source: info: unpacking atropos_1.1.31+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python3.10.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/24337/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='ae1f26c19b124c5d853b2c01e22bb475' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='24337' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qbOacYv2/pbuilderrc_RhO1 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qbOacYv2/b1 --logfile b1/build.log atropos_1.1.31+dfsg-3.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32c 5.10.0-23-armmp-lpae #1 SMP Debian 5.10.179-1 (2023-05-12) armv7l GNU/Linux I: ls -l /bin total 5072 -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash -rwxr-xr-x 1 root root 133220 Sep 20 2022 date -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd -rwxr-xr-x 1 root root 68104 Sep 20 2022 df -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 67548 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch -rwxr-xr-x 1 root root 67548 Sep 20 2022 true -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/24337/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, cython3, python3-all-dev, python3-setuptools, python3-setuptools-scm, python3-wheel, python3-loguru, python3-xphyle, python3-pytest, python3-jinja2, python3-pysam dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools-scm; however: Package python3-setuptools-scm is not installed. pbuilder-satisfydepends-dummy depends on python3-wheel; however: Package python3-wheel is not installed. pbuilder-satisfydepends-dummy depends on python3-loguru; however: Package python3-loguru is not installed. pbuilder-satisfydepends-dummy depends on python3-xphyle; however: Package python3-xphyle is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-jinja2; however: Package python3-jinja2 is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libhts3{a} libhtscodecs2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-colorama{a} python3-dev{a} python3-distutils{a} python3-iniconfig{a} python3-jinja2{a} python3-lib2to3{a} python3-loguru{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pokrok{a} python3-py{a} python3-pysam{a} python3-pytest{a} python3-setuptools{a} python3-setuptools-scm{a} python3-typing-extensions{a} python3-wheel{a} python3-xphyle{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-babel python3-pygments wget 0 packages upgraded, 89 newly installed, 0 to remove and 0 not upgraded. Need to get 37.1 MB of archives. After unpacking 135 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main armhf libpython3.11-minimal armhf 3.11.2-6 [798 kB] Get: 2 http://deb.debian.org/debian bookworm/main armhf libexpat1 armhf 2.5.0-1 [79.9 kB] Get: 3 http://deb.debian.org/debian bookworm/main armhf python3.11-minimal armhf 3.11.2-6 [1714 kB] Get: 4 http://deb.debian.org/debian bookworm/main armhf python3-minimal armhf 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main armhf media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main armhf readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main armhf libreadline8 armhf 8.2-1.3 [144 kB] Get: 8 http://deb.debian.org/debian bookworm/main armhf libpython3.11-stdlib armhf 3.11.2-6 [1678 kB] Get: 9 http://deb.debian.org/debian bookworm/main armhf python3.11 armhf 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main armhf libpython3-stdlib armhf 3.11.2-1+b1 [9296 B] Get: 11 http://deb.debian.org/debian bookworm/main armhf python3 armhf 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB] Get: 15 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB] Get: 16 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB] Get: 17 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 18 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB] Get: 19 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB] Get: 20 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB] Get: 21 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB] Get: 22 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB] Get: 23 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB] Get: 24 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 26 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB] Get: 27 http://deb.debian.org/debian bookworm/main armhf cython3 armhf 0.29.32-2+b1 [1230 kB] Get: 28 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB] Get: 29 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB] Get: 30 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB] Get: 31 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 32 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B] Get: 33 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 34 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 35 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB] Get: 36 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB] Get: 37 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB] Get: 38 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [591 kB] Get: 39 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB] Get: 40 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 41 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 42 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 43 http://deb.debian.org/debian bookworm/main armhf python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 44 http://deb.debian.org/debian bookworm/main armhf python3-distutils all 3.11.2-3 [131 kB] Get: 45 http://deb.debian.org/debian bookworm/main armhf dh-python all 5.20230130 [104 kB] Get: 46 http://deb.debian.org/debian bookworm/main armhf libbrotli1 armhf 1.0.9-2+b6 [271 kB] Get: 47 http://deb.debian.org/debian bookworm/main armhf libsasl2-modules-db armhf 2.1.28+dfsg-10 [19.0 kB] Get: 48 http://deb.debian.org/debian bookworm/main armhf libsasl2-2 armhf 2.1.28+dfsg-10 [52.3 kB] Get: 49 http://deb.debian.org/debian bookworm/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-5 [158 kB] Get: 50 http://deb.debian.org/debian bookworm/main armhf libnghttp2-14 armhf 1.52.0-1 [60.8 kB] Get: 51 http://deb.debian.org/debian bookworm/main armhf libpsl5 armhf 0.21.2-1 [57.5 kB] Get: 52 http://deb.debian.org/debian bookworm/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 53 http://deb.debian.org/debian bookworm/main armhf libssh2-1 armhf 1.10.0-3+b1 [163 kB] Get: 54 http://deb.debian.org/debian bookworm/main armhf libcurl3-gnutls armhf 7.88.1-9 [343 kB] Get: 55 http://deb.debian.org/debian bookworm/main armhf libdeflate0 armhf 1.14-1 [52.2 kB] Get: 56 http://deb.debian.org/debian bookworm/main armhf libexpat1-dev armhf 2.5.0-1 [134 kB] Get: 57 http://deb.debian.org/debian bookworm/main armhf libhtscodecs2 armhf 1.3.0-4 [60.4 kB] Get: 58 http://deb.debian.org/debian bookworm/main armhf libhts3 armhf 1.16+ds-3 [375 kB] Get: 59 http://deb.debian.org/debian bookworm/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 60 http://deb.debian.org/debian bookworm/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 61 http://deb.debian.org/debian bookworm/main armhf libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 62 http://deb.debian.org/debian bookworm/main armhf libpython3.11 armhf 3.11.2-6 [1710 kB] Get: 63 http://deb.debian.org/debian bookworm/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [902 kB] Get: 64 http://deb.debian.org/debian bookworm/main armhf libpython3.11-dev armhf 3.11.2-6 [3518 kB] Get: 65 http://deb.debian.org/debian bookworm/main armhf libpython3-dev armhf 3.11.2-1+b1 [9556 B] Get: 66 http://deb.debian.org/debian bookworm/main armhf libpython3-all-dev armhf 3.11.2-1+b1 [1068 B] Get: 67 http://deb.debian.org/debian bookworm/main armhf python3-all armhf 3.11.2-1+b1 [1060 B] Get: 68 http://deb.debian.org/debian bookworm/main armhf python3.11-dev armhf 3.11.2-6 [615 kB] Get: 69 http://deb.debian.org/debian bookworm/main armhf python3-dev armhf 3.11.2-1+b1 [26.2 kB] Get: 70 http://deb.debian.org/debian bookworm/main armhf python3-all-dev armhf 3.11.2-1+b1 [1076 B] Get: 71 http://deb.debian.org/debian bookworm/main armhf python3-attr all 22.2.0-1 [65.4 kB] Get: 72 http://deb.debian.org/debian bookworm/main armhf python3-colorama all 0.4.6-2 [36.8 kB] Get: 73 http://deb.debian.org/debian bookworm/main armhf python3-iniconfig all 1.1.1-2 [6396 B] Get: 74 http://deb.debian.org/debian bookworm/main armhf python3-markupsafe armhf 2.1.2-1+b1 [12.8 kB] Get: 75 http://deb.debian.org/debian bookworm/main armhf python3-jinja2 all 3.1.2-1 [119 kB] Get: 76 http://deb.debian.org/debian bookworm/main armhf python3-loguru all 0.6.0-3 [53.7 kB] Get: 77 http://deb.debian.org/debian bookworm/main armhf python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 78 http://deb.debian.org/debian bookworm/main armhf python3-packaging all 23.0-1 [32.5 kB] Get: 79 http://deb.debian.org/debian bookworm/main armhf python3-pkg-resources all 66.1.1-1 [296 kB] Get: 80 http://deb.debian.org/debian bookworm/main armhf python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 81 http://deb.debian.org/debian bookworm/main armhf python3-pokrok all 0.2.0-4 [11.1 kB] Get: 82 http://deb.debian.org/debian bookworm/main armhf python3-py all 1.11.0-1 [89.2 kB] Get: 83 http://deb.debian.org/debian bookworm/main armhf python3-pysam armhf 0.20.0+ds-3+b1 [1484 kB] Get: 84 http://deb.debian.org/debian bookworm/main armhf python3-pytest all 7.2.1-2 [236 kB] Get: 85 http://deb.debian.org/debian bookworm/main armhf python3-setuptools all 66.1.1-1 [521 kB] Get: 86 http://deb.debian.org/debian bookworm/main armhf python3-typing-extensions all 4.4.0-1 [45.2 kB] Get: 87 http://deb.debian.org/debian bookworm/main armhf python3-setuptools-scm all 7.1.0-3 [42.6 kB] Get: 88 http://deb.debian.org/debian bookworm/main armhf python3-wheel all 0.38.4-2 [30.8 kB] Get: 89 http://deb.debian.org/debian bookworm/main armhf python3-xphyle all 4.4.1-3 [51.2 kB] Fetched 37.1 MB in 1s (39.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_armhf.deb ... Unpacking libpython3.11-minimal:armhf (3.11.2-6) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.5.0-1_armhf.deb ... Unpacking libexpat1:armhf (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_armhf.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:armhf (3.11.2-6) ... Setting up libexpat1:armhf (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19645 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_armhf.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:armhf. Preparing to unpack .../3-libreadline8_8.2-1.3_armhf.deb ... Unpacking libreadline8:armhf (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:armhf. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_armhf.deb ... Unpacking libpython3.11-stdlib:armhf (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_armhf.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20079 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_armhf.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.44-3_armhf.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../03-libmagic1_1%3a5.44-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.44-3_armhf.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-12_armhf.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../06-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.22.4-10_armhf.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.38.1-5+b1_armhf.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../09-libpipeline1_1.5.7-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.11.2-2_armhf.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-3_armhf.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package cython3. Preparing to unpack .../16-cython3_0.29.32-2+b1_armhf.deb ... Unpacking cython3 (0.29.32-2+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../21-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../24-libelf1_0.188-2.1_armhf.deb ... Unpacking libelf1:armhf (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.15-1_armhf.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../26-libicu72_72.1-3_armhf.deb ... Unpacking libicu72:armhf (72.1-3) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../27-libxml2_2.9.14+dfsg-1.2_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.21-12_armhf.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../32-python3-lib2to3_3.11.2-3_all.deb ... Unpacking python3-lib2to3 (3.11.2-3) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../33-python3-distutils_3.11.2-3_all.deb ... Unpacking python3-distutils (3.11.2-3) ... Selecting previously unselected package dh-python. Preparing to unpack .../34-dh-python_5.20230130_all.deb ... Unpacking dh-python (5.20230130) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../35-libbrotli1_1.0.9-2+b6_armhf.deb ... Unpacking libbrotli1:armhf (1.0.9-2+b6) ... Selecting previously unselected package libsasl2-modules-db:armhf. Preparing to unpack .../36-libsasl2-modules-db_2.1.28+dfsg-10_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../37-libsasl2-2_2.1.28+dfsg-10_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:armhf. Preparing to unpack .../38-libldap-2.5-0_2.5.13+dfsg-5_armhf.deb ... Unpacking libldap-2.5-0:armhf (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../39-libnghttp2-14_1.52.0-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.52.0-1) ... Selecting previously unselected package libpsl5:armhf. Preparing to unpack .../40-libpsl5_0.21.2-1_armhf.deb ... Unpacking libpsl5:armhf (0.21.2-1) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../41-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:armhf. Preparing to unpack .../42-libssh2-1_1.10.0-3+b1_armhf.deb ... Unpacking libssh2-1:armhf (1.10.0-3+b1) ... Selecting previously unselected package libcurl3-gnutls:armhf. Preparing to unpack .../43-libcurl3-gnutls_7.88.1-9_armhf.deb ... Unpacking libcurl3-gnutls:armhf (7.88.1-9) ... Selecting previously unselected package libdeflate0:armhf. Preparing to unpack .../44-libdeflate0_1.14-1_armhf.deb ... Unpacking libdeflate0:armhf (1.14-1) ... Selecting previously unselected package libexpat1-dev:armhf. Preparing to unpack .../45-libexpat1-dev_2.5.0-1_armhf.deb ... Unpacking libexpat1-dev:armhf (2.5.0-1) ... Selecting previously unselected package libhtscodecs2:armhf. Preparing to unpack .../46-libhtscodecs2_1.3.0-4_armhf.deb ... Unpacking libhtscodecs2:armhf (1.3.0-4) ... Selecting previously unselected package libhts3:armhf. Preparing to unpack .../47-libhts3_1.16+ds-3_armhf.deb ... Unpacking libhts3:armhf (1.16+ds-3) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../48-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../49-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../50-libjs-sphinxdoc_5.3.0-4_all.deb ... Unpacking libjs-sphinxdoc (5.3.0-4) ... Selecting previously unselected package libpython3.11:armhf. Preparing to unpack .../51-libpython3.11_3.11.2-6_armhf.deb ... Unpacking libpython3.11:armhf (3.11.2-6) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../52-zlib1g-dev_1%3a1.2.13.dfsg-1_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.2.13.dfsg-1) ... Selecting previously unselected package libpython3.11-dev:armhf. Preparing to unpack .../53-libpython3.11-dev_3.11.2-6_armhf.deb ... Unpacking libpython3.11-dev:armhf (3.11.2-6) ... Selecting previously unselected package libpython3-dev:armhf. Preparing to unpack .../54-libpython3-dev_3.11.2-1+b1_armhf.deb ... Unpacking libpython3-dev:armhf (3.11.2-1+b1) ... Selecting previously unselected package libpython3-all-dev:armhf. Preparing to unpack .../55-libpython3-all-dev_3.11.2-1+b1_armhf.deb ... Unpacking libpython3-all-dev:armhf (3.11.2-1+b1) ... Selecting previously unselected package python3-all. Preparing to unpack .../56-python3-all_3.11.2-1+b1_armhf.deb ... Unpacking python3-all (3.11.2-1+b1) ... Selecting previously unselected package python3.11-dev. Preparing to unpack .../57-python3.11-dev_3.11.2-6_armhf.deb ... Unpacking python3.11-dev (3.11.2-6) ... Selecting previously unselected package python3-dev. Preparing to unpack .../58-python3-dev_3.11.2-1+b1_armhf.deb ... Unpacking python3-dev (3.11.2-1+b1) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../59-python3-all-dev_3.11.2-1+b1_armhf.deb ... Unpacking python3-all-dev (3.11.2-1+b1) ... Selecting previously unselected package python3-attr. Preparing to unpack .../60-python3-attr_22.2.0-1_all.deb ... Unpacking python3-attr (22.2.0-1) ... Selecting previously unselected package python3-colorama. Preparing to unpack .../61-python3-colorama_0.4.6-2_all.deb ... Unpacking python3-colorama (0.4.6-2) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../62-python3-iniconfig_1.1.1-2_all.deb ... Unpacking python3-iniconfig (1.1.1-2) ... Selecting previously unselected package python3-markupsafe. Preparing to unpack .../63-python3-markupsafe_2.1.2-1+b1_armhf.deb ... Unpacking python3-markupsafe (2.1.2-1+b1) ... Selecting previously unselected package python3-jinja2. Preparing to unpack .../64-python3-jinja2_3.1.2-1_all.deb ... Unpacking python3-jinja2 (3.1.2-1) ... Selecting previously unselected package python3-loguru. Preparing to unpack .../65-python3-loguru_0.6.0-3_all.deb ... Unpacking python3-loguru (0.6.0-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../66-python3-more-itertools_8.10.0-2_all.deb ... Unpacking python3-more-itertools (8.10.0-2) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../67-python3-packaging_23.0-1_all.deb ... Unpacking python3-packaging (23.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../68-python3-pkg-resources_66.1.1-1_all.deb ... Unpacking python3-pkg-resources (66.1.1-1) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../69-python3-pluggy_1.0.0+repack-1_all.deb ... Unpacking python3-pluggy (1.0.0+repack-1) ... Selecting previously unselected package python3-pokrok. Preparing to unpack .../70-python3-pokrok_0.2.0-4_all.deb ... Unpacking python3-pokrok (0.2.0-4) ... Selecting previously unselected package python3-py. Preparing to unpack .../71-python3-py_1.11.0-1_all.deb ... Unpacking python3-py (1.11.0-1) ... Selecting previously unselected package python3-pysam. Preparing to unpack .../72-python3-pysam_0.20.0+ds-3+b1_armhf.deb ... Unpacking python3-pysam (0.20.0+ds-3+b1) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../73-python3-pytest_7.2.1-2_all.deb ... Unpacking python3-pytest (7.2.1-2) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../74-python3-setuptools_66.1.1-1_all.deb ... Unpacking python3-setuptools (66.1.1-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../75-python3-typing-extensions_4.4.0-1_all.deb ... Unpacking python3-typing-extensions (4.4.0-1) ... Selecting previously unselected package python3-setuptools-scm. Preparing to unpack .../76-python3-setuptools-scm_7.1.0-3_all.deb ... Unpacking python3-setuptools-scm (7.1.0-3) ... Selecting previously unselected package python3-wheel. Preparing to unpack .../77-python3-wheel_0.38.4-2_all.deb ... Unpacking python3-wheel (0.38.4-2) ... Selecting previously unselected package python3-xphyle. Preparing to unpack .../78-python3-xphyle_4.4.1-3_all.deb ... Unpacking python3-xphyle (4.4.1-3) ... Setting up libhtscodecs2:armhf (1.3.0-4) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:armhf (1.5.7-1) ... Setting up libpsl5:armhf (0.21.2-1) ... Setting up libicu72:armhf (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:armhf (1.0.9-2+b6) ... Setting up libnghttp2-14:armhf (1.52.0-1) ... Setting up libmagic1:armhf (1:5.44-3) ... Setting up libdeflate0:armhf (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg-10) ... Setting up autotools-dev (20220109.1) ... Setting up libexpat1-dev:armhf (2.5.0-1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up autopoint (0.21-12) ... Setting up libsasl2-2:armhf (2.1.28+dfsg-10) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:armhf (1.10.0-3+b1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libelf1:armhf (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:armhf (2.9.14+dfsg-1.2) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libreadline8:armhf (8.2-1.3) ... Setting up libldap-2.5-0:armhf (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:armhf (3.11.2-6) ... Setting up libcurl3-gnutls:armhf (7.88.1-9) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:armhf (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libhts3:armhf (1.16+ds-3) ... Setting up libpython3.11:armhf (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-markupsafe (2.1.2-1+b1) ... Setting up python3-jinja2 (3.1.2-1) ... Setting up python3-packaging (23.0-1) ... Setting up libpython3.11-dev:armhf (3.11.2-6) ... Setting up cython3 (0.29.32-2+b1) ... Setting up python3-typing-extensions (4.4.0-1) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (22.2.0-1) ... Setting up python3-pokrok (0.2.0-4) ... Setting up python3-pysam (0.20.0+ds-3+b1) ... Setting up libpython3-dev:armhf (3.11.2-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-colorama (0.4.6-2) ... Setting up python3.11-dev (3.11.2-6) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-loguru (0.6.0-3) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-wheel (0.38.4-2) ... Setting up python3-setuptools-scm (7.1.0-3) ... Setting up libpython3-all-dev:armhf (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-xphyle (4.4.1-3) ... Setting up python3-all-dev (3.11.2-1+b1) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/atropos-1.1.31+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../atropos_1.1.31+dfsg-3_source.changes dpkg-buildpackage: info: source package atropos dpkg-buildpackage: info: source version 1.1.31+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/atropos-1.1.31+dfsg' dh_auto_clean I: pybuild base:240: python3.11 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( running clean removing '/build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build' (and everything under it) 'build/bdist.linux-armhf' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf .pytest_cache rm -rf atropos.egg-info rm -f atropos/align/_align.c atropos/commands/trim/_qualtrim.c atropos/io/_seqio.c make[1]: Leaving directory '/build/atropos-1.1.31+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( running build running build_py creating /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos copying atropos/_version.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos copying atropos/__init__.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos creating /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests copying tests/test_qualtrim.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests copying tests/test_colorspace.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests copying tests/test_commands.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests copying tests/test_atropos.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests copying tests/test_paired.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests copying tests/test_adapters.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests copying tests/test_filters.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests copying tests/test_multicore.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests copying tests/utils.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests copying tests/test_seqio.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests copying tests/test_modifiers.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests copying tests/test_trim.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests copying tests/__init__.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests copying tests/test_align.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests copying tests/test_xopen.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests creating /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/adapters copying atropos/adapters/__init__.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/adapters creating /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands copying atropos/commands/cli.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands copying atropos/commands/legacy_report.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands copying atropos/commands/base.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands copying atropos/commands/reports.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands copying atropos/commands/multicore.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands copying atropos/commands/stats.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands copying atropos/commands/__init__.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands creating /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io copying atropos/io/compression.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io copying atropos/io/seqio.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io copying atropos/io/progress.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io copying atropos/io/__init__.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io creating /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/align copying atropos/align/__init__.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/align creating /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/util copying atropos/util/colorspace.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/util copying atropos/util/__init__.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/util creating /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/qc copying atropos/commands/qc/cli.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/qc copying atropos/commands/qc/reports.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/qc copying atropos/commands/qc/__init__.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/qc creating /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/detect copying atropos/commands/detect/cli.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/detect copying atropos/commands/detect/reports.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/detect copying atropos/commands/detect/__init__.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/detect creating /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/error copying atropos/commands/error/cli.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/error copying atropos/commands/error/reports.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/error copying atropos/commands/error/__init__.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/error creating /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim copying atropos/commands/trim/cli.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim copying atropos/commands/trim/writers.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim copying atropos/commands/trim/filters.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim copying atropos/commands/trim/reports.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim copying atropos/commands/trim/multicore.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim copying atropos/commands/trim/qualtrim.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim copying atropos/commands/trim/__init__.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim copying atropos/commands/trim/modifiers.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim copying atropos/adapters/sequencing_adapters.fa -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/adapters UPDATING /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/_version.py set /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/_version.py to '1.1.31' running build_ext /build/atropos-1.1.31+dfsg/setup.py:82: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION): /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/atropos-1.1.31+dfsg/atropos/align/_align.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/atropos-1.1.31+dfsg/atropos/commands/trim/_qualtrim.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/atropos-1.1.31+dfsg/atropos/io/_seqio.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling atropos/align/_align.pyx because it changed. Compiling atropos/commands/trim/_qualtrim.pyx because it changed. Compiling atropos/io/_seqio.pyx because it changed. [1/3] Cythonizing atropos/align/_align.pyx [2/3] Cythonizing atropos/commands/trim/_qualtrim.pyx [3/3] Cythonizing atropos/io/_seqio.pyx building 'atropos.align._align' extension creating build creating build/temp.linux-armhf-cpython-311 creating build/temp.linux-armhf-cpython-311/atropos creating build/temp.linux-armhf-cpython-311/atropos/align arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/atropos-1.1.31+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c atropos/align/_align.c -o build/temp.linux-armhf-cpython-311/atropos/align/_align.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/atropos-1.1.31+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-311/atropos/align/_align.o -L/usr/lib/arm-linux-gnueabihf -o /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/align/_align.cpython-311-arm-linux-gnueabihf.so building 'atropos.commands.trim._qualtrim' extension creating build/temp.linux-armhf-cpython-311/atropos/commands creating build/temp.linux-armhf-cpython-311/atropos/commands/trim arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/atropos-1.1.31+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c atropos/commands/trim/_qualtrim.c -o build/temp.linux-armhf-cpython-311/atropos/commands/trim/_qualtrim.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/atropos-1.1.31+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-311/atropos/commands/trim/_qualtrim.o -L/usr/lib/arm-linux-gnueabihf -o /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/_qualtrim.cpython-311-arm-linux-gnueabihf.so building 'atropos.io._seqio' extension creating build/temp.linux-armhf-cpython-311/atropos/io arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/atropos-1.1.31+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c atropos/io/_seqio.c -o build/temp.linux-armhf-cpython-311/atropos/io/_seqio.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/atropos-1.1.31+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-311/atropos/io/_seqio.o -L/usr/lib/arm-linux-gnueabihf -o /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io/_seqio.cpython-311-arm-linux-gnueabihf.so running build_scripts creating build/scripts-3.11 copying and adjusting bin/atropos -> build/scripts-3.11 changing mode of build/scripts-3.11/atropos from 644 to 755 debian/rules override_dh_auto_test make[1]: Entering directory '/build/atropos-1.1.31+dfsg' \ dh_auto_test -- --before-test="ln -s /build/atropos-1.1.31+dfsg/tests/cut {build_dir}/tests && ln -s /build/atropos-1.1.31+dfsg/tests/data {build_dir}/tests" I: pybuild pybuild:307: ln -s /build/atropos-1.1.31+dfsg/tests/cut /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests && ln -s /build/atropos-1.1.31+dfsg/tests/data /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests I: pybuild base:240: cd /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build; python3.11 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack rootdir: /build/atropos-1.1.31+dfsg, configfile: pytest.ini collected 224 items tests/test_adapters.py ........ [ 3%] tests/test_align.py ................ [ 10%] tests/test_atropos.py .................................................. [ 33%] ............................s [ 45%] tests/test_colorspace.py ................. [ 53%] tests/test_commands.py . [ 54%] tests/test_filters.py .. [ 54%] tests/test_modifiers.py .................... [ 63%] tests/test_multicore.py ..... [ 66%] tests/test_paired.py .................................. [ 81%] tests/test_qualtrim.py . [ 81%] tests/test_seqio.py ................................... [ 97%] tests/test_trim.py .. [ 98%] tests/test_xopen.py .... [100%] =============================== warnings summary =============================== tests/test_paired.py:612 /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_paired.py:612: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.timeout(10) .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_sequence_reader /usr/lib/python3/dist-packages/_pytest/fixtures.py:901: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_sequence_reader is using nose-specific method: `setup(self)` To remove this warning, rename it to `setup_method(self)` See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose fixture_result = next(generator) .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_sequence_reader /usr/lib/python3/dist-packages/_pytest/fixtures.py:917: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_sequence_reader is using nose-specific method: `teardown(self)` To remove this warning, rename it to `teardown_method(self)` See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose next(it) .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_autodetect_fasta_format /usr/lib/python3/dist-packages/_pytest/fixtures.py:901: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_autodetect_fasta_format is using nose-specific method: `setup(self)` To remove this warning, rename it to `setup_method(self)` See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose fixture_result = next(generator) .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_autodetect_fasta_format /usr/lib/python3/dist-packages/_pytest/fixtures.py:917: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_autodetect_fasta_format is using nose-specific method: `teardown(self)` To remove this warning, rename it to `teardown_method(self)` See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose next(it) .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_write_qualities_to_fasta /usr/lib/python3/dist-packages/_pytest/fixtures.py:901: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_write_qualities_to_fasta is using nose-specific method: `setup(self)` To remove this warning, rename it to `setup_method(self)` See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose fixture_result = next(generator) .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_write_qualities_to_fasta /usr/lib/python3/dist-packages/_pytest/fixtures.py:917: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_write_qualities_to_fasta is using nose-specific method: `teardown(self)` To remove this warning, rename it to `teardown_method(self)` See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose next(it) .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_autodetect_fastq_format /usr/lib/python3/dist-packages/_pytest/fixtures.py:901: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_autodetect_fastq_format is using nose-specific method: `setup(self)` To remove this warning, rename it to `setup_method(self)` See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose fixture_result = next(generator) .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_autodetect_fastq_format /usr/lib/python3/dist-packages/_pytest/fixtures.py:917: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_autodetect_fastq_format is using nose-specific method: `teardown(self)` To remove this warning, rename it to `teardown_method(self)` See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose next(it) .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_fastq_qualities_missing /usr/lib/python3/dist-packages/_pytest/fixtures.py:901: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_fastq_qualities_missing is using nose-specific method: `setup(self)` To remove this warning, rename it to `setup_method(self)` See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose fixture_result = next(generator) .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_fastq_qualities_missing /usr/lib/python3/dist-packages/_pytest/fixtures.py:917: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_fastq_qualities_missing is using nose-specific method: `teardown(self)` To remove this warning, rename it to `teardown_method(self)` See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose next(it) .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test /usr/lib/python3/dist-packages/_pytest/fixtures.py:901: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test is using nose-specific method: `setup(self)` To remove this warning, rename it to `setup_method(self)` See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose fixture_result = next(generator) .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test /usr/lib/python3/dist-packages/_pytest/fixtures.py:917: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test is using nose-specific method: `teardown(self)` To remove this warning, rename it to `teardown_method(self)` See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose next(it) .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test_linelength /usr/lib/python3/dist-packages/_pytest/fixtures.py:901: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test_linelength is using nose-specific method: `setup(self)` To remove this warning, rename it to `setup_method(self)` See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose fixture_result = next(generator) .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test_linelength /usr/lib/python3/dist-packages/_pytest/fixtures.py:917: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test_linelength is using nose-specific method: `teardown(self)` To remove this warning, rename it to `teardown_method(self)` See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose next(it) .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test_write_sequence_object /usr/lib/python3/dist-packages/_pytest/fixtures.py:901: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test_write_sequence_object is using nose-specific method: `setup(self)` To remove this warning, rename it to `setup_method(self)` See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose fixture_result = next(generator) .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test_write_sequence_object /usr/lib/python3/dist-packages/_pytest/fixtures.py:917: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test_write_sequence_object is using nose-specific method: `teardown(self)` To remove this warning, rename it to `teardown_method(self)` See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose next(it) .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test_write_zero_length_sequence /usr/lib/python3/dist-packages/_pytest/fixtures.py:901: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test_write_zero_length_sequence is using nose-specific method: `setup(self)` To remove this warning, rename it to `setup_method(self)` See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose fixture_result = next(generator) .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test_write_zero_length_sequence /usr/lib/python3/dist-packages/_pytest/fixtures.py:917: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test_write_zero_length_sequence is using nose-specific method: `teardown(self)` To remove this warning, rename it to `teardown_method(self)` See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose next(it) .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastqWriter::test /usr/lib/python3/dist-packages/_pytest/fixtures.py:901: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastqWriter::test is using nose-specific method: `setup(self)` To remove this warning, rename it to `setup_method(self)` See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose fixture_result = next(generator) .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastqWriter::test /usr/lib/python3/dist-packages/_pytest/fixtures.py:917: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastqWriter::test is using nose-specific method: `teardown(self)` To remove this warning, rename it to `teardown_method(self)` See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose next(it) .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastqWriter::test_twoheaders /usr/lib/python3/dist-packages/_pytest/fixtures.py:901: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastqWriter::test_twoheaders is using nose-specific method: `setup(self)` To remove this warning, rename it to `setup_method(self)` See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose fixture_result = next(generator) .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastqWriter::test_twoheaders /usr/lib/python3/dist-packages/_pytest/fixtures.py:917: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. .pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastqWriter::test_twoheaders is using nose-specific method: `teardown(self)` To remove this warning, rename it to `teardown_method(self)` See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose next(it) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 223 passed, 1 skipped, 23 warnings in 46.95s ================= make[1]: Leaving directory '/build/atropos-1.1.31+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/atropos/ -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/atropos-1.1.31+dfsg/debian/atropos /usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py UPDATING /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/_version.py set /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/_version.py to '1.1.31' running build_ext /build/atropos-1.1.31+dfsg/setup.py:82: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION): running build_scripts running install_lib creating /build/atropos-1.1.31+dfsg/debian/atropos/usr creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11 creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/.adapters -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/_version.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/adapters copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/adapters/sequencing_adapters.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/adapters creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/adapters/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/adapters/__pycache__/__init__.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/adapters/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/adapters/__init__.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/adapters creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/__pycache__/__init__.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/__pycache__/_version.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/__pycache__ creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/cli.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/legacy_report.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/base.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/reports.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/multicore.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/stats.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/__pycache__/__init__.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/__pycache__/cli.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/__pycache__/base.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/__pycache__/multicore.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/__pycache__/reports.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/__pycache__/legacy_report.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/__pycache__/stats.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/__pycache__ creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/qc copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/qc/cli.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/qc copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/qc/reports.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/qc creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/qc/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/qc/__pycache__/__init__.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/qc/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/qc/__pycache__/cli.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/qc/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/qc/__init__.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/qc copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/__init__.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/detect copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/detect/cli.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/detect copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/detect/reports.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/detect creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/detect/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/detect/__pycache__/__init__.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/detect/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/detect/__pycache__/cli.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/detect/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/detect/__init__.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/detect creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/error copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/error/cli.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/error copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/error/reports.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/error creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/error/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/error/__pycache__/__init__.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/error/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/error/__pycache__/cli.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/error/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/error/__init__.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/error creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/cli.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/writers.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/filters.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/reports.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/_qualtrim.cpython-311-arm-linux-gnueabihf.so -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/multicore.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/__pycache__/qualtrim.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/__pycache__/modifiers.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/__pycache__/__init__.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/__pycache__/cli.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/__pycache__/multicore.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/__pycache__/writers.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/__pycache__/reports.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/__pycache__/filters.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/qualtrim.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/__init__.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/modifiers.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io/compression.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io/seqio.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io/progress.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io/__pycache__/__init__.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io/__pycache__/seqio.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io/__pycache__/compression.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io/__init__.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io/_seqio.cpython-311-arm-linux-gnueabihf.so -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/__init__.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/align creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/align/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/align/__pycache__/__init__.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/align/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/align/__init__.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/align copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/align/_align.cpython-311-arm-linux-gnueabihf.so -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/align creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/util copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/util/colorspace.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/util creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/util/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/util/__pycache__/__init__.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/util/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/util/__pycache__/colorspace.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/util/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/util/__init__.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/util creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_qualtrim.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/maxlen.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/twoadapters.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/example.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/lowercase.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/dos.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/small_mincut3.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/polya.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/maxn0.2.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/illumina.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/restfront.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/unconditional-back.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/rest.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-separate.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/overlapa.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/discard.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-untrimmed.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/pairedq.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/trimN5.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/sra.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired_adapter.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/illumina5.info.txt -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-too-short.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-filterboth_adapter.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/examplefront.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/anchored.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/small_mincut2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/lowqual.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/interleaved.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-filterboth_adapter.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired_insert.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/wildcard_adapter_anywhere.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/pairedu.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired_adapter.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-filterboth_insert.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/stripped.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired_bis1_insert.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/solid5p.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-trimmed.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/anywhere_repeat.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/twoadapters.first.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/small.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/trimN3.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/minlen.noprimer.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/empty.fastq.gz -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/unconditional-front.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/pairedq.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/anchored_no_indels_wildcard.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/wildcard.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/nextseq.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-filterboth_insert.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/insert.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/issue68.2.fq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/linked.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-onlyA.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/no-trim.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/suffix.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired_insert.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired_bis2_adapter.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-untrimmed.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-m27.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-filterboth.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/454.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired_bis1_adapter.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/small.trimmed.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/solid5p-anchored.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/small.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/SRR2040662_trimmed.fq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/illumina.info.txt -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired_bis2_insert.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/small.untrimmed.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/solid5p-anchored.notrim.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/pairedu.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/issue68.1.fq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-m27.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/back_repeat.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired.m14.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired_bis2_adapter.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/maxn0.4.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/solidmaq.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/illumina5.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired.m14.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/twoadapters.unknown.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/issue46.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/discard-untrimmed.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/anchored-back.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/maxn1.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/maxn2.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/wildcard_adapter.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-trimmed.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired_bis1_insert.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/wildcardN.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/maxn0.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/s_1_sequence.txt -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/back_repeat.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/solid.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/solidbfast.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/solidqual.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/solid5p-anchored.notrim.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/empty.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/highq.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/solid.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-onlyA.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/overlapb.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired_bis2_insert.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/plus.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/twoadapters.second.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/anchored_no_indels.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired_bis1_adapter.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-separate.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/lowq.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-filterboth.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/solid-no-zerocap.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/insert.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-too-short.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/solid5p.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/illumina64.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/minlen.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/solid5p-anchored.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/no_indels.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/small_mincut1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/unconditional-both.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_colorspace.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/twoadapters.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/example.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/dos.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/toolong.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/polya.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/prefix-adapter.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/rest.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/overlapa.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/rest.txt -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/trimN5.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/sra.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/anchored.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/lowqual.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/interleaved.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/paired_bis_insert.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/E3M.qual -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/paired_bis_adapter.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/simple.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/solid.qual -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/solid5p.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/anywhere_repeat.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/small.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/trimN3.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/solid.csfasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/suffix-adapter.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/wildcard.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/nextseq.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/adapter.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/insert.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/illumina.fastq.gz -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/tooshort.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/multiblock.fastq.gz -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/issue68.2.fq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/linked.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/maxn.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/bad_bases.fq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/simple.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/454.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/s_1_sequence.txt.gz -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/small.fastq.bz2 -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/tooshort.noprimer.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/issue68.1.fq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/back_repeat.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/E3M.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/illumina5.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/paired_bis_adapter.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/issue46.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/paired.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/anchored-back.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/wildcard_adapter.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/paired.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/small.myownextension -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/wildcardN.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/small.fastq.xz -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/paired_bis_insert.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/back_repeat.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/solid.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/empty.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/highq.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/solid.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/overlapb.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/withplus.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/plus.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/anchored_no_indels.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/big.1.fq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/lowq.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/insert.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/restfront.txt -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/solid5p.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/small.fastq.gz -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/illumina64.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/lengths.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/no_indels.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/big.2.fq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_commands.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_atropos.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_paired.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/testtmp copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/testtmp/tmp1-out.1.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/testtmp copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/testtmp/tmp1-out.1.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/testtmp copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/testtmp/tmp2-out.2.0.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/testtmp copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/testtmp/truncated.gz -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/testtmp copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/testtmp/tmp2-out.2.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/testtmp copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/testtmp/tmp2-out.2.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/testtmp copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/testtmp/tmp1-out.1.0.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/testtmp copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_adapters.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_filters.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_multicore.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/utils.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_seqio.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_modifiers.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/utils.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_adapters.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_align.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_modifiers.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_multicore.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/__init__.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_xopen.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_qualtrim.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_filters.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_paired.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_colorspace.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_seqio.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_commands.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_trim.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_atropos.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__ copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_trim.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__init__.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_align.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_xopen.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/_version.py to _version.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/adapters/__init__.py to __init__.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/cli.py to cli.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/legacy_report.py to legacy_report.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/base.py to base.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/reports.py to reports.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/multicore.py to multicore.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/stats.py to stats.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/qc/cli.py to cli.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/qc/reports.py to reports.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/qc/__init__.py to __init__.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/__init__.py to __init__.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/detect/cli.py to cli.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/detect/reports.py to reports.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/detect/__init__.py to __init__.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/error/cli.py to cli.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/error/reports.py to reports.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/error/__init__.py to __init__.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/cli.py to cli.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/writers.py to writers.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/filters.py to filters.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/reports.py to reports.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/multicore.py to multicore.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/qualtrim.py to qualtrim.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/__init__.py to __init__.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/modifiers.py to modifiers.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io/compression.py to compression.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io/seqio.py to seqio.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io/progress.py to progress.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io/__init__.py to __init__.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/__init__.py to __init__.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/align/__init__.py to __init__.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/util/colorspace.py to colorspace.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/util/__init__.py to __init__.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_qualtrim.py to test_qualtrim.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_colorspace.py to test_colorspace.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_commands.py to test_commands.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_atropos.py to test_atropos.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_paired.py to test_paired.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_adapters.py to test_adapters.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_filters.py to test_filters.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_multicore.py to test_multicore.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/utils.py to utils.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_seqio.py to test_seqio.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_modifiers.py to test_modifiers.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_trim.py to test_trim.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__init__.py to __init__.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_align.py to test_align.cpython-311.pyc byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_xopen.py to test_xopen.cpython-311.pyc running install_egg_info running egg_info creating atropos.egg-info writing atropos.egg-info/PKG-INFO writing dependency_links to atropos.egg-info/dependency_links.txt writing requirements to atropos.egg-info/requires.txt writing top-level names to atropos.egg-info/top_level.txt writing manifest file 'atropos.egg-info/SOURCES.txt' reading manifest file 'atropos.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README.rst' warning: no files found matching 'LICENSE.txt' warning: no files found matching 'atropos/report/templates/*' adding license file 'LICENSE' writing manifest file 'atropos.egg-info/SOURCES.txt' Copying atropos.egg-info to /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos-1.1.31.egg-info Skipping SOURCES.txt running install_scripts creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/bin copying build/scripts-3.11/atropos -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/bin changing mode of /build/atropos-1.1.31+dfsg/debian/atropos/usr/bin/atropos to 755 debian/rules override_dh_install make[1]: Entering directory '/build/atropos-1.1.31+dfsg' dh_install find debian -type d -name __pycache__ | xargs rm -rf find debian -type d -name tests | xargs rm -rf find debian -type f -name .adapters -delete make[1]: Leaving directory '/build/atropos-1.1.31+dfsg' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'atropos' in '../atropos_1.1.31+dfsg-3_armhf.deb'. dpkg-deb: building package 'atropos-dbgsym' in '../atropos-dbgsym_1.1.31+dfsg-3_armhf.deb'. dpkg-genbuildinfo --build=binary -O../atropos_1.1.31+dfsg-3_armhf.buildinfo dpkg-genchanges --build=binary -O../atropos_1.1.31+dfsg-3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/24337 and its subdirectories I: Current time: Mon May 15 20:32:19 -12 2023 I: pbuilder-time-stamp: 1684225939 Tue May 16 08:32:27 UTC 2023 I: 1st build successful. Starting 2nd build on remote node jtx1c-armhf-rb.debian.net. Tue May 16 08:32:27 UTC 2023 I: Preparing to do remote build '2' on jtx1c-armhf-rb.debian.net. Tue May 16 08:35:58 UTC 2023 I: Deleting $TMPDIR on jtx1c-armhf-rb.debian.net. Tue May 16 08:36:01 UTC 2023 I: atropos_1.1.31+dfsg-3_armhf.changes: Format: 1.8 Date: Mon, 04 Apr 2022 22:53:19 +0530 Source: atropos Binary: atropos atropos-dbgsym Architecture: armhf Version: 1.1.31+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: atropos - NGS read trimming tool that is specific, sensitive, and speedy Changes: atropos (1.1.31+dfsg-3) unstable; urgency=medium . * Team Upload. [ Mohammed Bilal ] * Initialize autopkgtest . [ Nilesh Patra ] * d/control: B-D on python3-all-dev instead of python3-dev in order to build extensions for all supported versions * d/t/control: Update test deps * d/t/run-unit-test: Do not test inplace, rather in AUTOPKGTEST_TMP Checksums-Sha1: e9825db096c2c5816dd2ae7389aa005d312d07b4 484520 atropos-dbgsym_1.1.31+dfsg-3_armhf.deb 7862cecc1ebf517cd5a6f003f2ebcdb1aba793bc 7115 atropos_1.1.31+dfsg-3_armhf.buildinfo 75550cf9cf259298bdf6e4721895a5dc2d543292 186224 atropos_1.1.31+dfsg-3_armhf.deb Checksums-Sha256: 6b1ce29c4e30bd5b545a5a02fc099aba20dbc6ffd6dbee946d8336f1661c5904 484520 atropos-dbgsym_1.1.31+dfsg-3_armhf.deb 3234f0e79e68095edc7daaf179937e19a39dcdb8aab1e203670187b01dd26478 7115 atropos_1.1.31+dfsg-3_armhf.buildinfo 8739e93f36359760482fdfa7e82d0ba91a632f4d1a44ca4cea96bed313cb56c0 186224 atropos_1.1.31+dfsg-3_armhf.deb Files: 443958d47c36e22957951bd8a5fa136f 484520 debug optional atropos-dbgsym_1.1.31+dfsg-3_armhf.deb c81fb50e7d54f4b62097af115a5aa01c 7115 science optional atropos_1.1.31+dfsg-3_armhf.buildinfo 0c7c8dc696603a046a5ba1e8e3cc3c9f 186224 science optional atropos_1.1.31+dfsg-3_armhf.deb Tue May 16 08:36:02 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.qbOacYv2/atropos_1.1.31+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.qbOacYv2/atropos_1.1.31+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.qbOacYv2/atropos_1.1.31+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.qbOacYv2/b1/atropos_1.1.31+dfsg-3_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.qbOacYv2/b2/atropos_1.1.31+dfsg-3_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.353s) 0.352s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.025s) 0.025s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Tue May 16 08:36:04 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Tue May 16 08:36:04 UTC 2023 I: atropos from bookworm built successfully and reproducibly on armhf. Tue May 16 08:36:05 UTC 2023 I: Submitting .buildinfo files to external archives: Tue May 16 08:36:05 UTC 2023 I: Submitting 8.0K b1/atropos_1.1.31+dfsg-3_armhf.buildinfo.asc Tue May 16 08:36:06 UTC 2023 I: Submitting 8.0K b2/atropos_1.1.31+dfsg-3_armhf.buildinfo.asc Tue May 16 08:36:07 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue May 16 08:36:07 UTC 2023 I: Done submitting .buildinfo files. Tue May 16 08:36:07 UTC 2023 I: Removing signed atropos_1.1.31+dfsg-3_armhf.buildinfo.asc files: removed './b1/atropos_1.1.31+dfsg-3_armhf.buildinfo.asc' removed './b2/atropos_1.1.31+dfsg-3_armhf.buildinfo.asc'