Thu Apr 27 17:23:36 UTC 2023 I: starting to build ska/bookworm/arm64 on jenkins on '2023-04-27 17:23' Thu Apr 27 17:23:36 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_15/16025/console.log Thu Apr 27 17:23:36 UTC 2023 I: Downloading source for bookworm/ska=1.0+dfsg-2 --2023-04-27 17:23:37-- http://cdn-fastly.deb.debian.org/debian/pool/main/s/ska/ska_1.0%2bdfsg-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1935 (1.9K) [text/prs.lines.tag] Saving to: ‘ska_1.0+dfsg-2.dsc’ 0K . 100% 146M=0s 2023-04-27 17:23:37 (146 MB/s) - ‘ska_1.0+dfsg-2.dsc’ saved [1935/1935] Thu Apr 27 17:23:37 UTC 2023 I: ska_1.0+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: ska Binary: ska Architecture: any Version: 1.0+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/simonrharris/SKA Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/ska Vcs-Git: https://salsa.debian.org/med-team/ska.git Build-Depends: debhelper-compat (= 13), zlib1g-dev, googletest Package-List: ska deb science optional arch=any Checksums-Sha1: d5e6350fdb1968c91800d6b704495d54ecc0bfc4 85612 ska_1.0+dfsg.orig.tar.xz 354fa2ce1834de500c5cb03c07866c9df933dac0 4092 ska_1.0+dfsg-2.debian.tar.xz Checksums-Sha256: 1a4aaa448c44b93010ee7dbacd4ff44dcd0876d6f4d9ed20a5ac5bf837e2ab42 85612 ska_1.0+dfsg.orig.tar.xz 83749413f955d5fb21083d388cd9f4b75996d5646e6fa1467b36054ae02677f9 4092 ska_1.0+dfsg-2.debian.tar.xz Files: 6fc4064b3eef8153bee41ead25059339 85612 ska_1.0+dfsg.orig.tar.xz acc5a6dd33da66d354c6301549d6f80d 4092 ska_1.0+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmM6diQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGSSQ//eOY75nB8ruLFzfkqZuL/LEsP4r5xOrld /ZqcyzM6NdWEJpicLRgGWeCpnmveiIAEi0zHBjraHMmq3PgEsiEdDAymkGI+eUNI SeOTR4y2CLigJRPZhs+pwdhXE7w2qdH4XUzjZi8IJIFciGOhLoWOVL31o9kf1xHg 3jINM/PjmjWIJ8Z4vi7552BfdXuuWYmYaGohKED0+lAYe8mdSrxY9Cc88O5WMqKi CHUVHtAaY6XEb9lszGY6z/rgcZRBYgFzzZMlHlPAzQYCJYNeAUbZBs8Y/yXGOc1N Pmelu1GM9sjtEbXcz4YBmAEuSKwTeULon2V+DPPwmiOz1ichUg7OAulgeYmvueVP cN+s9g/bWvv+XJ/pCq0qtHgJYpb9yy8Y9hm7lQQJGM91mG6Vv1qniITNLWUPhSmG RO8zTYIPpsnGoZ1QDdSkfufWTvQKb5e3CbF/S2R0i5UOPGCjvpjq34BGaoy9h317 bJNEGIKEdiPJ/nmKsEYhq+jfpFJ0jjLYHABJxGGLRPOXRCRdwDCpqxPg7Osru5YL VQHATUA4lo/YZMxWAuxGnxFW0f66RTSmU+Ulp4n9dL+GF4wSXLwCfRRm5WhkOFLP HIRjt9aqQTwtC6ZLboxPMbpQIh3sdwuQqF3z/odwKmE9AqUVl/SSM7AbYecgwIkE N6d6P92mAC4= =AEXu -----END PGP SIGNATURE----- Thu Apr 27 17:23:37 UTC 2023 I: Checking whether the package is not for us Thu Apr 27 17:23:37 UTC 2023 I: Starting 1st build on remote node codethink12-arm64.debian.net. Thu Apr 27 17:23:37 UTC 2023 I: Preparing to do remote build '1' on codethink12-arm64.debian.net. Thu Apr 27 17:26:37 UTC 2023 I: Deleting $TMPDIR on codethink12-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Apr 27 05:23:42 -12 2023 I: pbuilder-time-stamp: 1682616222 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ska_1.0+dfsg-2.dsc] I: copying [./ska_1.0+dfsg.orig.tar.xz] I: copying [./ska_1.0+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Oct 2 17:41:56 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ska_1.0+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting ska in ska-1.0+dfsg dpkg-source: info: unpacking ska_1.0+dfsg.orig.tar.xz dpkg-source: info: unpacking ska_1.0+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying include_vector.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/440/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='440' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LtXwLWWf/pbuilderrc_ORR2 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LtXwLWWf/b1 --logfile b1/build.log ska_1.0+dfsg-2.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink12-arm64 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 26 22:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/440/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, googletest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on googletest; however: Package googletest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 19.8 MB of archives. After unpacking 79.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 googletest all 1.12.1-0.2 [506 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] Fetched 19.8 MB in 0s (50.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../02-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../22-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../24-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.2_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-12_arm64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package googletest. Preparing to unpack .../30-googletest_1.12.1-0.2_all.deb ... Unpacking googletest (1.12.1-0.2) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../31-zlib1g-dev_1%3a1.2.13.dfsg-1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.2.13.dfsg-1) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libicu72:arm64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up googletest (1.12.1-0.2) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-12) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:arm64 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/ska-1.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ska_1.0+dfsg-2_source.changes dpkg-buildpackage: info: source package ska dpkg-buildpackage: info: source version 1.0+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j8 distclean make[1]: Entering directory '/build/ska-1.0+dfsg' rm -f build/DNA.o build/general.o build/kmers.o build/sk_align.o build/sk_alleles.o build/sk_compare.o build/sk_distance.o build/sk_fasta.o build/sk_fastq.o build/sk_find.o build/sk_humanise.o build/sk_info.o build/sk_merge.o build/sk_refalign.o build/sk_summary.o build/sk_type.o build/sk_unique.o build/sk_weed.o build/ska.o rm -f bin/ska make[1]: Leaving directory '/build/ska-1.0+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j8 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/ska-1.0+dfsg' g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/DNA.cpp -o build/DNA.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/general.cpp -o build/general.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/kmers.cpp -o build/kmers.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_align.cpp -o build/sk_align.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_alleles.cpp -o build/sk_alleles.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_compare.cpp -o build/sk_compare.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_distance.cpp -o build/sk_distance.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_fasta.cpp -o build/sk_fasta.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_fastq.cpp -o build/sk_fastq.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_find.cpp -o build/sk_find.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_humanise.cpp -o build/sk_humanise.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_info.cpp -o build/sk_info.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_merge.cpp -o build/sk_merge.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_refalign.cpp -o build/sk_refalign.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_summary.cpp -o build/sk_summary.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_type.cpp -o build/sk_type.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_unique.cpp -o build/sk_unique.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_weed.cpp -o build/sk_weed.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/ska.cpp -o build/ska.o g++ -g -std=c++0x -O2 -o bin/ska build/DNA.o build/general.o build/kmers.o build/sk_align.o build/sk_alleles.o build/sk_compare.o build/sk_distance.o build/sk_fasta.o build/sk_fastq.o build/sk_find.o build/sk_humanise.o build/sk_info.o build/sk_merge.o build/sk_refalign.o build/sk_summary.o build/sk_type.o build/sk_unique.o build/sk_weed.o build/ska.o -lz make[1]: Leaving directory '/build/ska-1.0+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/ska-1.0+dfsg' cd tests && ln -s /usr/src/googletest/googletest && make && \ ./general_unittest && ./kmers_unittest && ./DNA_unittest make[2]: Entering directory '/build/ska-1.0+dfsg/tests' g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -g -O2 -ffile-prefix-map=/build/ska-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wextra -pthread -c ../src//general.cpp ../src//general.cpp: In function ‘int openGzFileStream(const std::string&, igzstream&, bool)’: ../src//general.cpp:40:83: warning: unused parameter ‘verbose’ [-Wunused-parameter] 40 | int openGzFileStream(const std::string & fileName, igzstream & gzFileStream, bool verbose){ | ~~~~~^~~~~~~ g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -Igoogletest -g -O2 -ffile-prefix-map=/build/ska-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wextra -pthread -c \ googletest/src/gtest-all.cc g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -Igoogletest -g -O2 -ffile-prefix-map=/build/ska-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wextra -pthread -c \ googletest/src/gtest_main.cc ar rv gtest_main.a gtest-all.o gtest_main.o ar: creating gtest_main.a a - gtest-all.o a - gtest_main.o g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -g -O2 -ffile-prefix-map=/build/ska-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wextra -pthread -lpthread general.o general_unittest.cpp gtest_main.a -o general_unittest -lz g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -g -O2 -ffile-prefix-map=/build/ska-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wextra -pthread -c ../src//kmers.cpp ../src//kmers.cpp: In function ‘int printKmerFile(const std::unordered_map, std::array >&, std::string, int, float)’: ../src//kmers.cpp:70:22: warning: unused variable ‘basefound’ [-Wunused-variable] 70 | bool basefound=false; | ^~~~~~~~~ ../src//kmers.cpp:75:22: warning: unused variable ‘maxbase’ [-Wunused-variable] 75 | char maxbase; | ^~~~~~~ ../src//kmers.cpp: In function ‘void addKmerToStringMap(std::unordered_map, std::__cxx11::basic_string >&, const std::string&, char, const std::vector&, const std::vector&, int, int, int)’: ../src//kmers.cpp:265:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 265 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 274 | for (int i=0; i, std::array >&, const int&)’: ../src//kmers.cpp:304:15: warning: unused variable ‘filecovcutoff’ [-Wunused-variable] 304 | float filecovcutoff; | ^~~~~~~~~~~~~ In file included from /usr/include/c++/12/istream:39, from /usr/include/c++/12/sstream:38, from ../src//kmers.cpp:5: In function ‘std::basic_ostream& std::operator<<(basic_ostream&, char) [with _Traits = char_traits]’, inlined from ‘int printKmerFile(const std::unordered_map, std::array >&, std::string, int, float)’ at ../src//kmers.cpp:88:24: /usr/include/c++/12/ostream:527:16: warning: ‘base’ may be used uninitialized [-Wmaybe-uninitialized] 527 | __out.put(__c); | ~~~~~~~~~^~~~~ ../src//kmers.cpp: In function ‘int printKmerFile(const std::unordered_map, std::array >&, std::string, int, float)’: ../src//kmers.cpp:69:22: note: ‘base’ was declared here 69 | char base; | ^~~~ ../src//kmers.cpp: In function ‘int collectSampleNames(const std::vector >&, std::vector >&, bool)’: ../src//kmers.cpp:200:17: warning: ‘kmersize’ may be used uninitialized [-Wmaybe-uninitialized] 200 | if (newkmersize!=kmersize){ | ^~ ../src//kmers.cpp:183:13: note: ‘kmersize’ was declared here 183 | int kmersize; | ^~~~~~~~ g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -g -O2 -ffile-prefix-map=/build/ska-1.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wextra -pthread -c ../src//DNA.cpp ../src//DNA.cpp: In function ‘int circulariseSequence(std::string&, int)’: ../src//DNA.cpp:187:32: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 187 | if (mySequence.length() Changed-By: Andreas Tille Description: ska - Split Kmer Analysis Changes: ska (1.0+dfsg-2) unstable; urgency=medium . * Packaging update * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. Checksums-Sha1: 3e7ac8b1f94201fca4c00447378c05ca0cda1b44 2297464 ska-dbgsym_1.0+dfsg-2_arm64.deb c50e99dc42f6cc36986284ee8009f7eac9bae058 5166 ska_1.0+dfsg-2_arm64.buildinfo ce07e4d86c0c53ea481357e3738cab5ee3776950 114936 ska_1.0+dfsg-2_arm64.deb Checksums-Sha256: 8cb4cb18389cd498732c30b64a512e6b4e13b8c2ae1485de38838bd0543d9e34 2297464 ska-dbgsym_1.0+dfsg-2_arm64.deb 597249ec9ea8adff8cb8bc133da3df9b9ab8d887b9161c3982f3368db3e60bd8 5166 ska_1.0+dfsg-2_arm64.buildinfo 9f8af29e62358d199f92235bf3e12e72f82b54ff7d48a2eefeac98601baf91da 114936 ska_1.0+dfsg-2_arm64.deb Files: 29c72189f7c1aac2ad66fe31d5fa0852 2297464 debug optional ska-dbgsym_1.0+dfsg-2_arm64.deb 3045a88d56c8313099b6086d988280ef 5166 science optional ska_1.0+dfsg-2_arm64.buildinfo c20019e4d65883c4854b4fe1c35511b7 114936 science optional ska_1.0+dfsg-2_arm64.deb Thu Apr 27 17:30:32 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.LtXwLWWf/ska_1.0+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.LtXwLWWf/ska_1.0+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.LtXwLWWf/ska_1.0+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.LtXwLWWf/b1/ska_1.0+dfsg-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.LtXwLWWf/b2/ska_1.0+dfsg-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.991s) 0.990s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.039s) 0.039s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Thu Apr 27 17:30:34 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Thu Apr 27 17:30:34 UTC 2023 I: ska from bookworm built successfully and reproducibly on arm64. Thu Apr 27 17:30:35 UTC 2023 I: Submitting .buildinfo files to external archives: Thu Apr 27 17:30:35 UTC 2023 I: Submitting 8.0K b1/ska_1.0+dfsg-2_arm64.buildinfo.asc Thu Apr 27 17:30:36 UTC 2023 I: Submitting 8.0K b2/ska_1.0+dfsg-2_arm64.buildinfo.asc Thu Apr 27 17:30:37 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Apr 27 17:30:37 UTC 2023 I: Done submitting .buildinfo files. Thu Apr 27 17:30:37 UTC 2023 I: Removing signed ska_1.0+dfsg-2_arm64.buildinfo.asc files: removed './b1/ska_1.0+dfsg-2_arm64.buildinfo.asc' removed './b2/ska_1.0+dfsg-2_arm64.buildinfo.asc'