Fri Apr 14 03:55:47 UTC 2023 I: starting to build r-bioc-fmcsr/bookworm/arm64 on jenkins on '2023-04-14 03:55' Fri Apr 14 03:55:47 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_10/6685/console.log Fri Apr 14 03:55:47 UTC 2023 I: Downloading source for bookworm/r-bioc-fmcsr=1.40.0+dfsg-1 --2023-04-14 03:55:47-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/r-bioc-fmcsr/r-bioc-fmcsr_1.40.0%2bdfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2121 (2.1K) [text/prs.lines.tag] Saving to: ‘r-bioc-fmcsr_1.40.0+dfsg-1.dsc’ 0K .. 100% 134M=0s 2023-04-14 03:55:47 (134 MB/s) - ‘r-bioc-fmcsr_1.40.0+dfsg-1.dsc’ saved [2121/2121] Fri Apr 14 03:55:47 UTC 2023 I: r-bioc-fmcsr_1.40.0+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: r-bioc-fmcsr Binary: r-bioc-fmcsr Architecture: any Version: 1.40.0+dfsg-1 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/fmcsR/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-fmcsr Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-fmcsr.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-chemminer, r-cran-runit, r-bioc-biocgenerics Package-List: r-bioc-fmcsr deb gnu-r optional arch=any Checksums-Sha1: 932053cf79eb9f715b198b115cd0c952fc0a37e9 65288 r-bioc-fmcsr_1.40.0+dfsg.orig.tar.xz 1cc5eaa17b5b4d6593a45fb2b4994ce5e5880455 5920 r-bioc-fmcsr_1.40.0+dfsg-1.debian.tar.xz Checksums-Sha256: 1b12a30639f0e2e3c1d5a9020f8d86880473862573954dadc6e5a44c00d64638 65288 r-bioc-fmcsr_1.40.0+dfsg.orig.tar.xz e6d187b008c6c29bceedc334aba5d7c4e750c915278531ea774892c2ba8300a6 5920 r-bioc-fmcsr_1.40.0+dfsg-1.debian.tar.xz Files: b883904a014c7ab57d12a9de7118d35d 65288 r-bioc-fmcsr_1.40.0+dfsg.orig.tar.xz 138ff4dcc07721aac2215047b672b91d 5920 r-bioc-fmcsr_1.40.0+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmN6UdIRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEZtw/9G06KrHOwoi2gQcdFdrzmJ2Zk1nxGBoIH 04THsV0vmmoukxU+7Zz51Mq6ZzcDhKeFqIL7vrkfsqaTbO0ULtC59nq2ka6S+gaa EvteSBg+y478+nKkGHHJl2g4XnLAHgRca9KY9MrqwZgVsaSvTwPu2aaCA2MTXf/I rLHVQqqbBEwhtPfVPU0tyO757ycQXc+Rls2Eha5R1kgg7UEoLhtYVrqnBQp8QQtQ n//VHMtSpmE3w3Ozn2LB7cPqqiM2sNSX4WWvkKpNDqYpWD0HlN0RwMY+mpyZISBD 8eiTgirpwfY5eZexd4gUNfLYoxy4dEAd15S9aIzGXHXgPV3w4clpjtuQb8sXMz/x hk6PSE5eg1z431bPFONYH9zHdR3MPh+h1OKi1bVMLgi5z8K6xh3fawK9jCNvfja2 eTLMUVpc6c+kvbOP1f96nAfghyOsVamSvIV2DcOYk9SADr/oQPj0FU3nolUgpqsp J+JhfurRu3quCEaIrLraOIK9UkRUeq3i5TlxK1y4CGJ29MhNLZpwlHU6f8Etx+XW RGzqKUSJLT0By5LICMSC5CrkR7Rdead9Mye3mhCfPwMmKcGG+bYHnMIBTf6QD94P gHy3CdMHuMpxSh/hvTL4p4gJSGAjgzan2Pd9eB/psxGE9HqnjWJudgA81Fqhi2J2 tJPWJgjhqx0= =hG5T -----END PGP SIGNATURE----- Fri Apr 14 03:55:47 UTC 2023 I: Checking whether the package is not for us Fri Apr 14 03:55:47 UTC 2023 I: Starting 1st build on remote node codethink11-arm64.debian.net. Fri Apr 14 03:55:47 UTC 2023 I: Preparing to do remote build '1' on codethink11-arm64.debian.net. Fri Apr 14 03:58:02 UTC 2023 I: Deleting $TMPDIR on codethink11-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed May 15 22:18:49 -12 2024 I: pbuilder-time-stamp: 1715854729 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-fmcsr_1.40.0+dfsg-1.dsc] I: copying [./r-bioc-fmcsr_1.40.0+dfsg.orig.tar.xz] I: copying [./r-bioc-fmcsr_1.40.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Nov 20 04:12:02 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-fmcsr_1.40.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-fmcsr in r-bioc-fmcsr-1.40.0+dfsg dpkg-source: info: unpacking r-bioc-fmcsr_1.40.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-fmcsr_1.40.0+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/8939/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='8939' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.c6GbZf2N/pbuilderrc_lv9D --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.c6GbZf2N/b1 --logfile b1/build.log r-bioc-fmcsr_1.40.0+dfsg-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink11-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 15 05:13 /bin -> usr/bin I: user script /srv/workspace/pbuilder/8939/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-chemminer, r-cran-runit, r-bioc-biocgenerics dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-chemminer; however: Package r-bioc-chemminer is not installed. pbuilder-satisfydepends-dummy depends on r-cran-runit; however: Package r-cran-runit is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics; however: Package r-bioc-biocgenerics is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} icu-devtools{a} intltool-debian{a} javascript-common{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo-gobject2{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcurl3-gnutls{a} libcurl4{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgfortran-12-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-bootstrap4{a} libjs-d3{a} libjs-es5-shim{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-datatables-extensions{a} libjs-jquery-selectize.js{a} libjs-jquery-ui{a} libjs-json{a} libjs-mathjax{a} libjs-microplugin.js{a} libjs-modernizr{a} libjs-popper.js{a} libjs-prettify{a} libjs-sifter.js{a} libjs-twitter-bootstrap-datepicker{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblua5.3-0{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre16-3{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpcre3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libreadline-dev{a} libreadline8{a} libregexp-ipv6-perl{a} librsvg2-2{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsm6{a} libssh2-1{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libuv1{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} libyaml-0-2{a} m4{a} man-db{a} node-bootstrap-sass{a} node-html5shiv{a} node-normalize.css{a} openssl{a} pandoc{a} pandoc-data{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-bioc-chemminer{a} r-cran-base64enc{a} r-cran-bh{a} r-cran-bitops{a} r-cran-bslib{a} r-cran-cachem{a} r-cran-cli{a} r-cran-colorspace{a} r-cran-commonmark{a} r-cran-crayon{a} r-cran-crosstalk{a} r-cran-dbi{a} r-cran-digest{a} r-cran-dt{a} r-cran-ellipsis{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fastmap{a} r-cran-fontawesome{a} r-cran-fs{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gridextra{a} r-cran-gtable{a} r-cran-highr{a} r-cran-htmltools{a} r-cran-htmlwidgets{a} r-cran-httpuv{a} r-cran-isoband{a} r-cran-jquerylib{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-later{a} r-cran-lattice{a} r-cran-lazyeval{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-memoise{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-png{a} r-cran-promises{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcurl{a} r-cran-rjson{a} r-cran-rlang{a} r-cran-rmarkdown{a} r-cran-rsvg{a} r-cran-runit{a} r-cran-sass{a} r-cran-scales{a} r-cran-shiny{a} r-cran-sourcetools{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tibble{a} r-cran-tinytex{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridislite{a} r-cran-withr{a} r-cran-xfun{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} shared-mime-info{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libgdk-pixbuf2.0-bin libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools librsvg2-common libsasl2-modules libx11-protocol-perl lynx node-highlight.js node-jquery publicsuffix r-cran-bit64 r-cran-codetools r-cran-covr r-cran-curl r-cran-data.table r-cran-dplyr r-cran-dygraphs r-cran-formattable r-cran-future r-cran-generics r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-interp r-cran-lubridate r-cran-mapproj r-cran-maps r-cran-maptools r-cran-markdown r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-rsconnect r-cran-rsqlite r-cran-sf r-cran-sp r-cran-svglite r-cran-testit r-cran-testthat r-cran-thematic r-cran-tikzdevice r-cran-tufte r-cran-vdiffr r-cran-waldo r-cran-xml2 r-doc-html r-recommended wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 292 newly installed, 0 to remove and 0 not upgraded. Need to get 201 MB of archives. After unpacking 855 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 openssl arm64 3.0.8-1 [1373 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 ca-certificates all 20230311 [153 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 dctrl-tools arm64 2.24-3 [101 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 26 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 28 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.1+b3 [619 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 zip arm64 3.0-13 [223 kB] Get: 37 http://deb.debian.org/debian bookworm/main arm64 unzip arm64 6.0-28 [157 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 libpaper1 arm64 1.1.29 [12.6 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 libpaper-utils arm64 1.1.29 [8776 B] Get: 40 http://deb.debian.org/debian bookworm/main arm64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 libblas3 arm64 3.11.0-2 [91.4 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 libpng16-16 arm64 1.6.39-2 [269 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 libfreetype6 arm64 2.12.1+dfsg-4 [369 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 fontconfig-config arm64 2.14.1-4 [315 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 libfontconfig1 arm64 2.14.1-4 [381 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 libpixman-1-0 arm64 0.42.2-1 [470 kB] Get: 50 http://deb.debian.org/debian bookworm/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 51 http://deb.debian.org/debian bookworm/main arm64 libbsd0 arm64 0.11.7-2 [115 kB] Get: 52 http://deb.debian.org/debian bookworm/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 53 http://deb.debian.org/debian bookworm/main arm64 libxcb1 arm64 1.15-1 [143 kB] Get: 54 http://deb.debian.org/debian bookworm/main arm64 libx11-data all 2:1.8.4-2 [292 kB] Get: 55 http://deb.debian.org/debian bookworm/main arm64 libx11-6 arm64 2:1.8.4-2 [736 kB] Get: 56 http://deb.debian.org/debian bookworm/main arm64 libxcb-render0 arm64 1.15-1 [115 kB] Get: 57 http://deb.debian.org/debian bookworm/main arm64 libxcb-shm0 arm64 1.15-1 [106 kB] Get: 58 http://deb.debian.org/debian bookworm/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB] Get: 59 http://deb.debian.org/debian bookworm/main arm64 libxrender1 arm64 1:0.9.10-1.1 [32.0 kB] Get: 60 http://deb.debian.org/debian bookworm/main arm64 libcairo2 arm64 1.16.0-7 [527 kB] Get: 61 http://deb.debian.org/debian bookworm/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-10 [20.8 kB] Get: 62 http://deb.debian.org/debian bookworm/main arm64 libsasl2-2 arm64 2.1.28+dfsg-10 [58.0 kB] Get: 63 http://deb.debian.org/debian bookworm/main arm64 libldap-2.5-0 arm64 2.5.13+dfsg-5 [171 kB] Get: 64 http://deb.debian.org/debian bookworm/main arm64 libnghttp2-14 arm64 1.52.0-1 [67.9 kB] Get: 65 http://deb.debian.org/debian bookworm/main arm64 libpsl5 arm64 0.21.2-1 [58.6 kB] Get: 66 http://deb.debian.org/debian bookworm/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 67 http://deb.debian.org/debian bookworm/main arm64 libssh2-1 arm64 1.10.0-3+b1 [172 kB] Get: 68 http://deb.debian.org/debian bookworm/main arm64 libcurl4 arm64 7.88.1-7 [361 kB] Get: 69 http://deb.debian.org/debian bookworm/main arm64 libglib2.0-0 arm64 2.74.6-1 [1311 kB] Get: 70 http://deb.debian.org/debian bookworm/main arm64 libjpeg62-turbo arm64 1:2.1.5-2 [171 kB] Get: 71 http://deb.debian.org/debian bookworm/main arm64 libgfortran5 arm64 12.2.0-14 [340 kB] Get: 72 http://deb.debian.org/debian bookworm/main arm64 liblapack3 arm64 3.11.0-2 [1664 kB] Get: 73 http://deb.debian.org/debian bookworm/main arm64 fontconfig arm64 2.14.1-4 [449 kB] Get: 74 http://deb.debian.org/debian bookworm/main arm64 libfribidi0 arm64 1.0.8-2.1 [64.9 kB] Get: 75 http://deb.debian.org/debian bookworm/main arm64 libgraphite2-3 arm64 1.3.14-1 [75.6 kB] Get: 76 http://deb.debian.org/debian bookworm/main arm64 libharfbuzz0b arm64 6.0.0+dfsg-3 [1914 kB] Get: 77 http://deb.debian.org/debian bookworm/main arm64 libthai-data all 0.1.29-1 [176 kB] Get: 78 http://deb.debian.org/debian bookworm/main arm64 libdatrie1 arm64 0.2.13-2+b1 [42.6 kB] Get: 79 http://deb.debian.org/debian bookworm/main arm64 libthai0 arm64 0.1.29-1 [56.2 kB] Get: 80 http://deb.debian.org/debian bookworm/main arm64 libpango-1.0-0 arm64 1.50.12+ds-1 [200 kB] Get: 81 http://deb.debian.org/debian bookworm/main arm64 libpangoft2-1.0-0 arm64 1.50.12+ds-1 [44.5 kB] Get: 82 http://deb.debian.org/debian bookworm/main arm64 libpangocairo-1.0-0 arm64 1.50.12+ds-1 [32.0 kB] Get: 83 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get: 84 http://deb.debian.org/debian bookworm/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [973 kB] Get: 85 http://deb.debian.org/debian bookworm/main arm64 libdeflate0 arm64 1.14-1 [54.3 kB] Get: 86 http://deb.debian.org/debian bookworm/main arm64 libjbig0 arm64 2.1-6.1 [30.0 kB] Get: 87 http://deb.debian.org/debian bookworm/main arm64 liblerc4 arm64 4.0.0+ds-2 [138 kB] Get: 88 http://deb.debian.org/debian bookworm/main arm64 libwebp7 arm64 1.2.4-0.1 [259 kB] Get: 89 http://deb.debian.org/debian bookworm/main arm64 libtiff6 arm64 4.5.0-5 [300 kB] Get: 90 http://deb.debian.org/debian bookworm/main arm64 libxft2 arm64 2.3.6-1 [58.7 kB] Get: 91 http://deb.debian.org/debian bookworm/main arm64 x11-common all 1:7.7+23 [252 kB] Get: 92 http://deb.debian.org/debian bookworm/main arm64 libxss1 arm64 1:1.2.3-1 [17.8 kB] Get: 93 http://deb.debian.org/debian bookworm/main arm64 libtk8.6 arm64 8.6.13-2 [729 kB] Get: 94 http://deb.debian.org/debian bookworm/main arm64 libice6 arm64 2:1.0.10-1 [55.6 kB] Get: 95 http://deb.debian.org/debian bookworm/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB] Get: 96 http://deb.debian.org/debian bookworm/main arm64 libxt6 arm64 1:1.2.1-1.1 [172 kB] Get: 97 http://deb.debian.org/debian bookworm/main arm64 r-base-core arm64 4.2.2.20221110-2 [25.7 MB] Get: 98 http://deb.debian.org/debian bookworm/main arm64 libgfortran-12-dev arm64 12.2.0-14 [396 kB] Get: 99 http://deb.debian.org/debian bookworm/main arm64 gfortran-12 arm64 12.2.0-14 [8646 kB] Get: 100 http://deb.debian.org/debian bookworm/main arm64 gfortran arm64 4:12.2.0-3 [1420 B] Get: 101 http://deb.debian.org/debian bookworm/main arm64 libblas-dev arm64 3.11.0-2 [97.6 kB] Get: 102 http://deb.debian.org/debian bookworm/main arm64 liblapack-dev arm64 3.11.0-2 [3065 kB] Get: 103 http://deb.debian.org/debian bookworm/main arm64 libncurses6 arm64 6.4-2 [94.0 kB] Get: 104 http://deb.debian.org/debian bookworm/main arm64 libncurses-dev arm64 6.4-2 [335 kB] Get: 105 http://deb.debian.org/debian bookworm/main arm64 libncurses5-dev arm64 6.4-2 [932 B] Get: 106 http://deb.debian.org/debian bookworm/main arm64 libreadline-dev arm64 8.2-1.3 [151 kB] Get: 107 http://deb.debian.org/debian bookworm/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-2 [292 kB] Get: 108 http://deb.debian.org/debian bookworm/main arm64 libjpeg-dev arm64 1:2.1.5-2 [71.8 kB] Get: 109 http://deb.debian.org/debian bookworm/main arm64 libpcre2-16-0 arm64 10.42-1 [216 kB] Get: 110 http://deb.debian.org/debian bookworm/main arm64 libpcre2-32-0 arm64 10.42-1 [207 kB] Get: 111 http://deb.debian.org/debian bookworm/main arm64 libpcre2-posix3 arm64 10.42-1 [55.5 kB] Get: 112 http://deb.debian.org/debian bookworm/main arm64 libpcre2-dev arm64 10.42-1 [664 kB] Get: 113 http://deb.debian.org/debian bookworm/main arm64 libpcre3 arm64 2:8.39-15 [313 kB] Get: 114 http://deb.debian.org/debian bookworm/main arm64 libpcre16-3 arm64 2:8.39-15 [234 kB] Get: 115 http://deb.debian.org/debian bookworm/main arm64 libpcre32-3 arm64 2:8.39-15 [226 kB] Get: 116 http://deb.debian.org/debian bookworm/main arm64 libpcrecpp0v5 arm64 2:8.39-15 [142 kB] Get: 117 http://deb.debian.org/debian bookworm/main arm64 libpcre3-dev arm64 2:8.39-15 [584 kB] Get: 118 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] Get: 119 http://deb.debian.org/debian bookworm/main arm64 libpng-dev arm64 1.6.39-2 [354 kB] Get: 120 http://deb.debian.org/debian bookworm/main arm64 libbz2-dev arm64 1.0.8-5+b1 [31.5 kB] Get: 121 http://deb.debian.org/debian bookworm/main arm64 liblzma-dev arm64 5.4.1-0.2 [255 kB] Get: 122 http://deb.debian.org/debian bookworm/main arm64 icu-devtools arm64 72.1-3 [192 kB] Get: 123 http://deb.debian.org/debian bookworm/main arm64 libicu-dev arm64 72.1-3 [10.2 MB] Get: 124 http://deb.debian.org/debian bookworm/main arm64 libxmuu1 arm64 2:1.1.3-3 [24.0 kB] Get: 125 http://deb.debian.org/debian bookworm/main arm64 xauth arm64 1:1.1.2-1 [35.5 kB] Get: 126 http://deb.debian.org/debian bookworm/main arm64 libpkgconf3 arm64 1.8.1-1 [35.3 kB] Get: 127 http://deb.debian.org/debian bookworm/main arm64 pkgconf-bin arm64 1.8.1-1 [28.9 kB] Get: 128 http://deb.debian.org/debian bookworm/main arm64 pkgconf arm64 1.8.1-1 [25.9 kB] Get: 129 http://deb.debian.org/debian bookworm/main arm64 pkg-config arm64 1.8.1-1 [13.7 kB] Get: 130 http://deb.debian.org/debian bookworm/main arm64 r-base-dev all 4.2.2.20221110-2 [4492 B] Get: 131 http://deb.debian.org/debian bookworm/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 132 http://deb.debian.org/debian bookworm/main arm64 libswitch-perl all 2.17-3 [20.3 kB] Get: 133 http://deb.debian.org/debian bookworm/main arm64 libclone-perl arm64 0.46-1 [13.5 kB] Get: 134 http://deb.debian.org/debian bookworm/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 135 http://deb.debian.org/debian bookworm/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 136 http://deb.debian.org/debian bookworm/main arm64 libhttp-date-perl all 6.05-2 [10.5 kB] Get: 137 http://deb.debian.org/debian bookworm/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 138 http://deb.debian.org/debian bookworm/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 139 http://deb.debian.org/debian bookworm/main arm64 libregexp-ipv6-perl all 0.03-3 [5212 B] Get: 140 http://deb.debian.org/debian bookworm/main arm64 liburi-perl all 5.17-1 [90.4 kB] Get: 141 http://deb.debian.org/debian bookworm/main arm64 libhttp-message-perl all 6.44-1 [81.7 kB] Get: 142 http://deb.debian.org/debian bookworm/main arm64 libparams-util-perl arm64 1.102-2+b1 [24.2 kB] Get: 143 http://deb.debian.org/debian bookworm/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 144 http://deb.debian.org/debian bookworm/main arm64 libdata-optlist-perl all 0.113-1 [10.6 kB] Get: 145 http://deb.debian.org/debian bookworm/main arm64 libb-hooks-op-check-perl arm64 0.22-2+b1 [10.4 kB] Get: 146 http://deb.debian.org/debian bookworm/main arm64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get: 147 http://deb.debian.org/debian bookworm/main arm64 libdevel-callchecker-perl arm64 0.008-2 [15.9 kB] Get: 148 http://deb.debian.org/debian bookworm/main arm64 libparams-classify-perl arm64 0.015-2+b1 [22.9 kB] Get: 149 http://deb.debian.org/debian bookworm/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 150 http://deb.debian.org/debian bookworm/main arm64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 151 http://deb.debian.org/debian bookworm/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 152 http://deb.debian.org/debian bookworm/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 153 http://deb.debian.org/debian bookworm/main arm64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 154 http://deb.debian.org/debian bookworm/main arm64 libclass-load-xs-perl arm64 0.10-2+b1 [14.1 kB] Get: 155 http://deb.debian.org/debian bookworm/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 156 http://deb.debian.org/debian bookworm/main arm64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 157 http://deb.debian.org/debian bookworm/main arm64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 158 http://deb.debian.org/debian bookworm/main arm64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 159 http://deb.debian.org/debian bookworm/main arm64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 160 http://deb.debian.org/debian bookworm/main arm64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 161 http://deb.debian.org/debian bookworm/main arm64 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB] Get: 162 http://deb.debian.org/debian bookworm/main arm64 libsub-exporter-perl all 0.989-1 [50.5 kB] Get: 163 http://deb.debian.org/debian bookworm/main arm64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 164 http://deb.debian.org/debian bookworm/main arm64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 165 http://deb.debian.org/debian bookworm/main arm64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 166 http://deb.debian.org/debian bookworm/main arm64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 167 http://deb.debian.org/debian bookworm/main arm64 libpackage-stash-xs-perl arm64 0.30-1+b1 [18.8 kB] Get: 168 http://deb.debian.org/debian bookworm/main arm64 libmoose-perl arm64 2.2203-1 [794 kB] Get: 169 http://deb.debian.org/debian bookworm/main arm64 libvariable-magic-perl arm64 0.63-1+b1 [42.8 kB] Get: 170 http://deb.debian.org/debian bookworm/main arm64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get: 171 http://deb.debian.org/debian bookworm/main arm64 libsub-identify-perl arm64 0.14-3 [10.9 kB] Get: 172 http://deb.debian.org/debian bookworm/main arm64 libsub-name-perl arm64 0.26-2+b1 [12.4 kB] Get: 173 http://deb.debian.org/debian bookworm/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 174 http://deb.debian.org/debian bookworm/main arm64 libcurl3-gnutls arm64 7.88.1-7 [356 kB] Get: 175 http://deb.debian.org/debian bookworm/main arm64 libwww-curl-perl arm64 4.17-10 [57.1 kB] Get: 176 http://deb.debian.org/debian bookworm/main arm64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 177 http://deb.debian.org/debian bookworm/main arm64 dh-r all 20230121 [37.9 kB] Get: 178 http://deb.debian.org/debian bookworm/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 179 http://deb.debian.org/debian bookworm/main arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 180 http://deb.debian.org/debian bookworm/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 181 http://deb.debian.org/debian bookworm/main arm64 javascript-common all 11+nmu1 [6260 B] Get: 182 http://deb.debian.org/debian bookworm/main arm64 libboost1.74-dev arm64 1.74.0+ds1-20 [9510 kB] Get: 183 http://deb.debian.org/debian bookworm/main arm64 libboost-dev arm64 1.74.0.3 [4548 B] Get: 184 http://deb.debian.org/debian bookworm/main arm64 libcairo-gobject2 arm64 1.16.0-7 [112 kB] Get: 185 http://deb.debian.org/debian bookworm/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-1 [306 kB] Get: 186 http://deb.debian.org/debian bookworm/main arm64 shared-mime-info arm64 2.2-1 [727 kB] Get: 187 http://deb.debian.org/debian bookworm/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-1+b1 [130 kB] Get: 188 http://deb.debian.org/debian bookworm/main arm64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 189 http://deb.debian.org/debian bookworm/main arm64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get: 190 http://deb.debian.org/debian bookworm/main arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB] Get: 191 http://deb.debian.org/debian bookworm/main arm64 libjs-d3 all 3.5.17-4 [132 kB] Get: 192 http://deb.debian.org/debian bookworm/main arm64 libjs-es5-shim all 4.6.7-2 [47.4 kB] Get: 193 http://deb.debian.org/debian bookworm/main arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB] Get: 194 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 195 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Get: 196 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] Get: 197 http://deb.debian.org/debian bookworm/main arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB] Get: 198 http://deb.debian.org/debian bookworm/main arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B] Get: 199 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB] Get: 200 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 201 http://deb.debian.org/debian bookworm/main arm64 libjs-json all 0~20221030+~1.0.8-1 [20.0 kB] Get: 202 http://deb.debian.org/debian bookworm/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 203 http://deb.debian.org/debian bookworm/main arm64 libjs-modernizr all 2.6.2+ds1-5 [47.1 kB] Get: 204 http://deb.debian.org/debian bookworm/main arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB] Get: 205 http://deb.debian.org/debian bookworm/main arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB] Get: 206 http://deb.debian.org/debian bookworm/main arm64 liblua5.3-0 arm64 5.3.6-2 [110 kB] Get: 207 http://deb.debian.org/debian bookworm/main arm64 librsvg2-2 arm64 2.54.5+dfsg-1 [2302 kB] Get: 208 http://deb.debian.org/debian bookworm/main arm64 libuv1 arm64 1.44.2-1 [133 kB] Get: 209 http://deb.debian.org/debian bookworm/main arm64 libyaml-0-2 arm64 0.2.5-1 [50.4 kB] Get: 210 http://deb.debian.org/debian bookworm/main arm64 node-bootstrap-sass all 3.4.3-2 [186 kB] Get: 211 http://deb.debian.org/debian bookworm/main arm64 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Get: 212 http://deb.debian.org/debian bookworm/main arm64 node-normalize.css all 8.0.1-5 [12.7 kB] Get: 213 http://deb.debian.org/debian bookworm/main arm64 pandoc-data all 2.17.1.1-1.1 [417 kB] Get: 214 http://deb.debian.org/debian bookworm/main arm64 pandoc arm64 2.17.1.1-1.1 [29.0 MB] Get: 215 http://deb.debian.org/debian bookworm/main arm64 r-bioc-biocgenerics all 0.44.0-2 [600 kB] Get: 216 http://deb.debian.org/debian bookworm/main arm64 r-cran-littler arm64 0.3.17-1 [95.6 kB] Get: 217 http://deb.debian.org/debian bookworm/main arm64 r-cran-rjson arm64 0.2.21-1 [137 kB] Get: 218 http://deb.debian.org/debian bookworm/main arm64 r-cran-bitops arm64 1.0-7-1 [30.1 kB] Get: 219 http://deb.debian.org/debian bookworm/main arm64 r-cran-rcurl arm64 1.98-1.10+dfsg-1 [782 kB] Get: 220 http://deb.debian.org/debian bookworm/main arm64 r-cran-dbi all 1.1.3-1 [687 kB] Get: 221 http://deb.debian.org/debian bookworm/main arm64 r-cran-digest arm64 0.6.31-1 [180 kB] Get: 222 http://deb.debian.org/debian bookworm/main arm64 r-cran-pkgkitten all 0.2.2-2 [27.0 kB] Get: 223 http://deb.debian.org/debian bookworm/main arm64 r-cran-rcpp arm64 1.0.10-1 [2043 kB] Get: 224 http://deb.debian.org/debian bookworm/main arm64 r-cran-cli arm64 3.6.0-1 [1282 kB] Get: 225 http://deb.debian.org/debian bookworm/main arm64 r-cran-glue arm64 1.6.2-1 [152 kB] Get: 226 http://deb.debian.org/debian bookworm/main arm64 r-cran-gtable all 0.3.1+dfsg-1 [165 kB] Get: 227 http://deb.debian.org/debian bookworm/main arm64 r-cran-isoband arm64 0.2.7-1 [1612 kB] Get: 228 http://deb.debian.org/debian bookworm/main arm64 r-cran-rlang arm64 1.0.6-1 [1614 kB] Get: 229 http://deb.debian.org/debian bookworm/main arm64 r-cran-lifecycle all 1.0.3+dfsg-1 [109 kB] Get: 230 http://deb.debian.org/debian bookworm/main arm64 r-cran-mass arm64 7.3-58.2-1 [1120 kB] Get: 231 http://deb.debian.org/debian bookworm/main arm64 r-cran-lattice arm64 0.20-45-3 [1175 kB] Get: 232 http://deb.debian.org/debian bookworm/main arm64 r-cran-nlme arm64 3.1.162-1 [2255 kB] Get: 233 http://deb.debian.org/debian bookworm/main arm64 r-cran-matrix arm64 1.5-3-1 [3757 kB] Get: 234 http://deb.debian.org/debian bookworm/main arm64 r-cran-mgcv arm64 1.8-41-1 [3144 kB] Get: 235 http://deb.debian.org/debian bookworm/main arm64 r-cran-farver arm64 2.1.1-1 [1388 kB] Get: 236 http://deb.debian.org/debian bookworm/main arm64 r-cran-labeling all 0.4.2-1 [62.7 kB] Get: 237 http://deb.debian.org/debian bookworm/main arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1690 kB] Get: 238 http://deb.debian.org/debian bookworm/main arm64 r-cran-munsell all 0.5.0-2 [236 kB] Get: 239 http://deb.debian.org/debian bookworm/main arm64 r-cran-r6 all 2.5.1-1 [105 kB] Get: 240 http://deb.debian.org/debian bookworm/main arm64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get: 241 http://deb.debian.org/debian bookworm/main arm64 r-cran-viridislite all 0.4.1-1 [1299 kB] Get: 242 http://deb.debian.org/debian bookworm/main arm64 r-cran-scales all 1.2.1-1 [614 kB] Get: 243 http://deb.debian.org/debian bookworm/main arm64 r-cran-fansi arm64 1.0.4-1 [615 kB] Get: 244 http://deb.debian.org/debian bookworm/main arm64 r-cran-magrittr arm64 2.0.3-1 [200 kB] Get: 245 http://deb.debian.org/debian bookworm/main arm64 r-cran-utf8 arm64 1.2.3-1 [132 kB] Get: 246 http://deb.debian.org/debian bookworm/main arm64 r-cran-vctrs arm64 0.5.2-1 [1350 kB] Get: 247 http://deb.debian.org/debian bookworm/main arm64 r-cran-pillar all 1.8.1+dfsg-1 [463 kB] Get: 248 http://deb.debian.org/debian bookworm/main arm64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 249 http://deb.debian.org/debian bookworm/main arm64 r-cran-tibble arm64 3.1.8+dfsg-1 [513 kB] Get: 250 http://deb.debian.org/debian bookworm/main arm64 r-cran-withr all 2.5.0-1 [236 kB] Get: 251 http://deb.debian.org/debian bookworm/main arm64 r-cran-ggplot2 all 3.4.1+dfsg-1 [3333 kB] Get: 252 http://deb.debian.org/debian bookworm/main arm64 r-cran-gridextra all 2.3-3 [1024 kB] Get: 253 http://deb.debian.org/debian bookworm/main arm64 r-cran-png arm64 0.1-8-1 [40.3 kB] Get: 254 http://deb.debian.org/debian bookworm/main arm64 r-cran-base64enc arm64 0.1-3-3 [27.8 kB] Get: 255 http://deb.debian.org/debian bookworm/main arm64 r-cran-fastmap arm64 1.1.1-1 [67.6 kB] Get: 256 http://deb.debian.org/debian bookworm/main arm64 r-cran-ellipsis arm64 0.3.2-2 [35.1 kB] Get: 257 http://deb.debian.org/debian bookworm/main arm64 r-cran-htmltools arm64 0.5.4-1 [364 kB] Get: 258 http://deb.debian.org/debian bookworm/main arm64 r-cran-jsonlite arm64 1.8.4+dfsg-1 [440 kB] Get: 259 http://deb.debian.org/debian bookworm/main arm64 r-cran-yaml arm64 2.3.7-1 [98.3 kB] Get: 260 http://deb.debian.org/debian bookworm/main arm64 r-cran-evaluate all 0.20-1 [85.9 kB] Get: 261 http://deb.debian.org/debian bookworm/main arm64 r-cran-xfun arm64 0.37+dfsg-1 [393 kB] Get: 262 http://deb.debian.org/debian bookworm/main arm64 r-cran-highr all 0.10+dfsg-1 [38.1 kB] Get: 263 http://deb.debian.org/debian bookworm/main arm64 r-cran-knitr all 1.42+dfsg-1 [901 kB] Get: 264 http://deb.debian.org/debian bookworm/main arm64 r-cran-fs arm64 1.6.1+dfsg-1 [225 kB] Get: 265 http://deb.debian.org/debian bookworm/main arm64 r-cran-rappdirs arm64 0.3.3-1 [47.4 kB] Get: 266 http://deb.debian.org/debian bookworm/main arm64 r-cran-sass arm64 0.4.5+dfsg-1 [848 kB] Get: 267 http://deb.debian.org/debian bookworm/main arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.1 kB] Get: 268 http://deb.debian.org/debian bookworm/main arm64 r-cran-cachem arm64 1.0.7-1 [71.7 kB] Get: 269 http://deb.debian.org/debian bookworm/main arm64 r-cran-memoise all 2.0.1-1 [53.8 kB] Get: 270 http://deb.debian.org/debian bookworm/main arm64 r-cran-mime arm64 0.12-1+b1 [36.1 kB] Get: 271 http://deb.debian.org/debian bookworm/main arm64 r-cran-bslib all 0.4.2+dfsg-1 [3773 kB] Get: 272 http://deb.debian.org/debian bookworm/main arm64 r-cran-stringi arm64 1.7.12-1 [830 kB] Get: 273 http://deb.debian.org/debian bookworm/main arm64 r-cran-stringr all 1.5.0-1 [295 kB] Get: 274 http://deb.debian.org/debian bookworm/main arm64 r-cran-tinytex all 0.44-1 [138 kB] Get: 275 http://deb.debian.org/debian bookworm/main arm64 r-cran-later arm64 1.3.0+dfsg-1+b1 [109 kB] Get: 276 http://deb.debian.org/debian bookworm/main arm64 r-cran-promises arm64 1.2.0.1+dfsg-1 [272 kB] Get: 277 http://deb.debian.org/debian bookworm/main arm64 r-cran-httpuv arm64 1.6.9+dfsg-1 [453 kB] Get: 278 http://deb.debian.org/debian bookworm/main arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get: 279 http://deb.debian.org/debian bookworm/main arm64 r-cran-fontawesome all 0.5.0-1 [1304 kB] Get: 280 http://deb.debian.org/debian bookworm/main arm64 r-cran-sourcetools arm64 0.1.7-1-1 [44.9 kB] Get: 281 http://deb.debian.org/debian bookworm/main arm64 r-cran-crayon all 1.5.2-1 [165 kB] Get: 282 http://deb.debian.org/debian bookworm/main arm64 r-cran-commonmark arm64 1.8.1-1 [105 kB] Get: 283 http://deb.debian.org/debian bookworm/main arm64 r-cran-shiny all 1.7.4+dfsg-2 [2732 kB] Get: 284 http://deb.debian.org/debian bookworm/main arm64 r-cran-rmarkdown all 2.20+dfsg-1 [2265 kB] Get: 285 http://deb.debian.org/debian bookworm/main arm64 r-cran-htmlwidgets all 1.6.1+dfsg-1 [120 kB] Get: 286 http://deb.debian.org/debian bookworm/main arm64 r-cran-lazyeval arm64 0.2.2-1+b1 [143 kB] Get: 287 http://deb.debian.org/debian bookworm/main arm64 r-cran-crosstalk all 1.2.0+dfsg-1 [171 kB] Get: 288 http://deb.debian.org/debian bookworm/main arm64 r-cran-dt all 0.27+dfsg-1 [236 kB] Get: 289 http://deb.debian.org/debian bookworm/main arm64 r-cran-rsvg arm64 2.4.0-1 [265 kB] Get: 290 http://deb.debian.org/debian bookworm/main arm64 r-cran-bh all 1.74.0-2 [5524 B] Get: 291 http://deb.debian.org/debian bookworm/main arm64 r-bioc-chemminer arm64 3.50.0+dfsg-1 [1168 kB] Get: 292 http://deb.debian.org/debian bookworm/main arm64 r-cran-runit all 0.4.32-3 [294 kB] Fetched 201 MB in 8s (26.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../000-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.0.8-1_arm64.deb ... Unpacking openssl (3.0.8-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../005-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../008-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../011-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package ucf. Preparing to unpack .../013-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../015-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../016-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../017-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../018-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../019-dctrl-tools_2.24-3_arm64.deb ... Unpacking dctrl-tools (2.24-3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../020-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../021-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../022-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../023-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../024-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../025-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../026-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../027-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../028-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../029-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../030-libxml2_2.9.14+dfsg-1.1+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.1+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../031-gettext_0.21-12_arm64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../032-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../033-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../034-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package zip. Preparing to unpack .../035-zip_3.0-13_arm64.deb ... Unpacking zip (3.0-13) ... Selecting previously unselected package unzip. Preparing to unpack .../036-unzip_6.0-28_arm64.deb ... Unpacking unzip (6.0-28) ... Selecting previously unselected package libpaper1:arm64. Preparing to unpack .../037-libpaper1_1.1.29_arm64.deb ... Unpacking libpaper1:arm64 (1.1.29) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../038-libpaper-utils_1.1.29_arm64.deb ... Unpacking libpaper-utils (1.1.29) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../039-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../040-libblas3_3.11.0-2_arm64.deb ... Unpacking libblas3:arm64 (3.11.0-2) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../041-libexpat1_2.5.0-1_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../042-libbrotli1_1.0.9-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b6) ... Selecting previously unselected package libpng16-16:arm64. Preparing to unpack .../043-libpng16-16_1.6.39-2_arm64.deb ... Unpacking libpng16-16:arm64 (1.6.39-2) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../044-libfreetype6_2.12.1+dfsg-4_arm64.deb ... Unpacking libfreetype6:arm64 (2.12.1+dfsg-4) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../045-fonts-dejavu-core_2.37-6_all.deb ... Unpacking fonts-dejavu-core (2.37-6) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../046-fontconfig-config_2.14.1-4_arm64.deb ... Unpacking fontconfig-config (2.14.1-4) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../047-libfontconfig1_2.14.1-4_arm64.deb ... Unpacking libfontconfig1:arm64 (2.14.1-4) ... Selecting previously unselected package libpixman-1-0:arm64. Preparing to unpack .../048-libpixman-1-0_0.42.2-1_arm64.deb ... Unpacking libpixman-1-0:arm64 (0.42.2-1) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../049-libxau6_1%3a1.0.9-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.9-1) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../050-libbsd0_0.11.7-2_arm64.deb ... Unpacking libbsd0:arm64 (0.11.7-2) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../051-libxdmcp6_1%3a1.1.2-3_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../052-libxcb1_1.15-1_arm64.deb ... Unpacking libxcb1:arm64 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../053-libx11-data_2%3a1.8.4-2_all.deb ... Unpacking libx11-data (2:1.8.4-2) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../054-libx11-6_2%3a1.8.4-2_arm64.deb ... Unpacking libx11-6:arm64 (2:1.8.4-2) ... Selecting previously unselected package libxcb-render0:arm64. Preparing to unpack .../055-libxcb-render0_1.15-1_arm64.deb ... Unpacking libxcb-render0:arm64 (1.15-1) ... Selecting previously unselected package libxcb-shm0:arm64. Preparing to unpack .../056-libxcb-shm0_1.15-1_arm64.deb ... Unpacking libxcb-shm0:arm64 (1.15-1) ... Selecting previously unselected package libxext6:arm64. Preparing to unpack .../057-libxext6_2%3a1.3.4-1+b1_arm64.deb ... Unpacking libxext6:arm64 (2:1.3.4-1+b1) ... Selecting previously unselected package libxrender1:arm64. Preparing to unpack .../058-libxrender1_1%3a0.9.10-1.1_arm64.deb ... Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... Selecting previously unselected package libcairo2:arm64. Preparing to unpack .../059-libcairo2_1.16.0-7_arm64.deb ... Unpacking libcairo2:arm64 (1.16.0-7) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../060-libsasl2-modules-db_2.1.28+dfsg-10_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../061-libsasl2-2_2.1.28+dfsg-10_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:arm64. Preparing to unpack .../062-libldap-2.5-0_2.5.13+dfsg-5_arm64.deb ... Unpacking libldap-2.5-0:arm64 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../063-libnghttp2-14_1.52.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.52.0-1) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../064-libpsl5_0.21.2-1_arm64.deb ... Unpacking libpsl5:arm64 (0.21.2-1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../065-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:arm64. Preparing to unpack .../066-libssh2-1_1.10.0-3+b1_arm64.deb ... Unpacking libssh2-1:arm64 (1.10.0-3+b1) ... Selecting previously unselected package libcurl4:arm64. Preparing to unpack .../067-libcurl4_7.88.1-7_arm64.deb ... Unpacking libcurl4:arm64 (7.88.1-7) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../068-libglib2.0-0_2.74.6-1_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.74.6-1) ... Selecting previously unselected package libjpeg62-turbo:arm64. 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No schema files found: doing nothing. Setting up libjs-sifter.js (0.6.0+dfsg-3) ... Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Setting up unzip (6.0-28) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b6) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.31-2) ... Setting up node-html5shiv (3.7.3+dfsg-5) ... Setting up libnghttp2-14:arm64 (1.52.0-1) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up libdeflate0:arm64 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... Setting up file (1:5.44-3) ... Setting up libjs-modernizr (2.6.2+ds1-5) ... 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Setting up shared-mime-info (2.2-1) ... Setting up liblapack-dev:arm64 (3.11.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libdata-optlist-perl (0.113-1) ... Setting up pkg-config:arm64 (1.8.1-1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libncurses5-dev:arm64 (6.4-2) ... Setting up libcurl4:arm64 (7.88.1-7) ... Setting up libx11-6:arm64 (2:1.8.4-2) ... Setting up libharfbuzz0b:arm64 (6.0.0+dfsg-3) ... Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-1+b1) ... Setting up libfontconfig1:arm64 (2.14.1-4) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libsm6:arm64 (2:1.2.3-1) ... Setting up libxmuu1:arm64 (2:1.1.3-3) ... Setting up libsub-exporter-perl (0.989-1) ... Setting up libhttp-message-perl (6.44-1) ... 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Setting up r-cran-ggplot2 (3.4.1+dfsg-1) ... Setting up r-cran-httpuv (1.6.9+dfsg-1) ... Setting up r-cran-fontawesome (0.5.0-1) ... Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... Setting up r-cran-bslib (0.4.2+dfsg-1) ... Setting up r-cran-shiny (1.7.4+dfsg-2) ... Setting up r-cran-rmarkdown (2.20+dfsg-1) ... Setting up r-cran-crosstalk (1.2.0+dfsg-1) ... Setting up r-cran-htmlwidgets (1.6.1+dfsg-1) ... Setting up r-cran-dt (0.27+dfsg-1) ... Setting up r-bioc-chemminer (3.50.0+dfsg-1) ... Processing triggers for libc-bin (2.36-8) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/r-bioc-fmcsr-1.40.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-fmcsr_1.40.0+dfsg-1_source.changes dpkg-buildpackage: info: source package r-bioc-fmcsr dpkg-buildpackage: info: source version 1.40.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R configure.ac:32: warning: AC_OUTPUT should be used without arguments. configure.ac:32: You should run autoupdate. dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-fmcsr/ -O--buildsystem=R I: R Package: fmcsR Version: 1.40.0 I: Building using R version 4.2.2.20221110-2 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Sun, 20 Nov 2022 16:34:35 +0100 mkdir -p /build/r-bioc-fmcsr-1.40.0\+dfsg/debian/r-bioc-fmcsr/usr/lib/R/site-library R CMD INSTALL -l /build/r-bioc-fmcsr-1.40.0\+dfsg/debian/r-bioc-fmcsr/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 20 Nov 2022 16:34:35 +0100'" * installing *source* package 'fmcsR' ... ** using staged installation checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for size_t... yes checking for alarm... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating config.h ** libs make[1]: Entering directory '/build/r-bioc-fmcsr-1.40.0+dfsg/src' g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-85GD2O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MCS.cpp -o MCS.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-85GD2O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MCSCompound.cpp -o MCSCompound.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-85GD2O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MCSMap.cpp -o MCSMap.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-85GD2O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MCSRingDetector.cpp -o MCSRingDetector.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-85GD2O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fmcs_R_wrap.cpp -o fmcs_R_wrap.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-85GD2O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c util.cpp -o util.o g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-z,relro -o fmcsR.so MCS.o MCSCompound.o MCSMap.o MCSRingDetector.o fmcs_R_wrap.o util.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/r-bioc-fmcsr-1.40.0+dfsg/src' make[1]: Entering directory '/build/r-bioc-fmcsr-1.40.0+dfsg/src' make[1]: Leaving directory '/build/r-bioc-fmcsr-1.40.0+dfsg/src' installing to /build/r-bioc-fmcsr-1.40.0+dfsg/debian/r-bioc-fmcsr/usr/lib/R/site-library/00LOCK-r-bioc-fmcsr-1.40.0+dfsg/00new/fmcsR/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fmcsR) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 302. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 303. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 306. W: Ignoring specified R dependency: R (>= 2.10.0) I: Using r-bioc-chemminer for Depends:ChemmineR I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-knitr for Suggests:knitr W: Cannot find a debian package for Suggests:knitcitations W: Cannot find a debian package for Suggests:knitrBootstrap I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-cran-runit for Imports:RUnit I: Using r-bioc-chemminer for Imports:ChemmineR I: Using r-bioc-biocgenerics for Imports:BiocGenerics I: BioConductor API version: r-api-bioc-3.16 I: Use r-bioc-fmcsr as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-fmcsr' in '../r-bioc-fmcsr_1.40.0+dfsg-1_arm64.deb'. dpkg-deb: building package 'r-bioc-fmcsr-dbgsym' in '../r-bioc-fmcsr-dbgsym_1.40.0+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-fmcsr_1.40.0+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-fmcsr_1.40.0+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/8939 and its subdirectories I: Current time: Wed May 15 22:21:01 -12 2024 I: pbuilder-time-stamp: 1715854861 Fri Apr 14 03:58:03 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink12-arm64.debian.net. Fri Apr 14 03:58:03 UTC 2023 I: Preparing to do remote build '2' on codethink12-arm64.debian.net. Fri Apr 14 04:00:23 UTC 2023 I: Deleting $TMPDIR on codethink12-arm64.debian.net. Fri Apr 14 04:00:24 UTC 2023 I: r-bioc-fmcsr_1.40.0+dfsg-1_arm64.changes: Format: 1.8 Date: Sun, 20 Nov 2022 16:34:35 +0100 Source: r-bioc-fmcsr Binary: r-bioc-fmcsr r-bioc-fmcsr-dbgsym Architecture: arm64 Version: 1.40.0+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Andreas Tille Description: r-bioc-fmcsr - GNU R mismatch tolerant maximum common substructure searching Changes: r-bioc-fmcsr (1.40.0+dfsg-1) unstable; urgency=medium . * New upstream version * Update lintian override info format in d/source/lintian-overrides on line 2. Checksums-Sha1: 413a03ab9da1738f68af911bdfa9d816733b13be 762376 r-bioc-fmcsr-dbgsym_1.40.0+dfsg-1_arm64.deb a2fc59871378c3d9bc77e32bdee46ca0ab08c129 13623 r-bioc-fmcsr_1.40.0+dfsg-1_arm64.buildinfo 14212fbc6b851b085fad499a8a001d57a21faa1f 229420 r-bioc-fmcsr_1.40.0+dfsg-1_arm64.deb Checksums-Sha256: b3602b25249783ae9890a363da1c31dc917b9b15350a212ec563a96c2b30fd53 762376 r-bioc-fmcsr-dbgsym_1.40.0+dfsg-1_arm64.deb 47ce3dc0d8d00eaa0f872e5daf9a7d8dd89a59a021271f52217c0706134b653e 13623 r-bioc-fmcsr_1.40.0+dfsg-1_arm64.buildinfo d9ab430db281c1a29b2ceaf7083a9a1d6efd6d355e828ed6a98ba7a1dccb9c6c 229420 r-bioc-fmcsr_1.40.0+dfsg-1_arm64.deb Files: 88876998e23e818aaeecd7b4d71c5311 762376 debug optional r-bioc-fmcsr-dbgsym_1.40.0+dfsg-1_arm64.deb 31e1cacce63b096fb7d5bc9304acba45 13623 gnu-r optional r-bioc-fmcsr_1.40.0+dfsg-1_arm64.buildinfo 7ef58a08a0ed31f142d7c0468b9577b8 229420 gnu-r optional r-bioc-fmcsr_1.40.0+dfsg-1_arm64.deb Fri Apr 14 04:00:25 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.c6GbZf2N/r-bioc-fmcsr_1.40.0+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.c6GbZf2N/r-bioc-fmcsr_1.40.0+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.c6GbZf2N/r-bioc-fmcsr_1.40.0+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.c6GbZf2N/b1/r-bioc-fmcsr_1.40.0+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.c6GbZf2N/b2/r-bioc-fmcsr_1.40.0+dfsg-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.364s) 0.364s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.027s) 0.027s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Fri Apr 14 04:00:27 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Fri Apr 14 04:00:27 UTC 2023 I: r-bioc-fmcsr from bookworm built successfully and reproducibly on arm64. Fri Apr 14 04:00:29 UTC 2023 I: Submitting .buildinfo files to external archives: Fri Apr 14 04:00:29 UTC 2023 I: Submitting 16K b1/r-bioc-fmcsr_1.40.0+dfsg-1_arm64.buildinfo.asc Fri Apr 14 04:00:31 UTC 2023 I: Submitting 16K b2/r-bioc-fmcsr_1.40.0+dfsg-1_arm64.buildinfo.asc Fri Apr 14 04:00:32 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Apr 14 04:00:32 UTC 2023 I: Done submitting .buildinfo files. Fri Apr 14 04:00:32 UTC 2023 I: Removing signed r-bioc-fmcsr_1.40.0+dfsg-1_arm64.buildinfo.asc files: removed './b1/r-bioc-fmcsr_1.40.0+dfsg-1_arm64.buildinfo.asc' removed './b2/r-bioc-fmcsr_1.40.0+dfsg-1_arm64.buildinfo.asc'