Thu Apr 13 02:20:17 UTC 2023 I: starting to build python-freesasa/bookworm/arm64 on jenkins on '2023-04-13 02:20' Thu Apr 13 02:20:17 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_25/29197/console.log Thu Apr 13 02:20:17 UTC 2023 I: Downloading source for bookworm/python-freesasa=2.1.0-3 --2023-04-13 02:20:17-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-freesasa/python-freesasa_2.1.0-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2325 (2.3K) [text/prs.lines.tag] Saving to: ‘python-freesasa_2.1.0-3.dsc’ 0K .. 100% 216M=0s 2023-04-13 02:20:17 (216 MB/s) - ‘python-freesasa_2.1.0-3.dsc’ saved [2325/2325] Thu Apr 13 02:20:17 UTC 2023 I: python-freesasa_2.1.0-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-freesasa Binary: python-freesasa-doc, python3-freesasa Architecture: any all Version: 2.1.0-3 Maintainer: Debian Python Team Uploaders: Andrius Merkys , Homepage: https://freesasa.github.io/python/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/python-team/packages/python-freesasa Vcs-Git: https://salsa.debian.org/python-team/packages/python-freesasa.git Testsuite: autopkgtest Testsuite-Triggers: freesasa, python3-all, python3-pytest Build-Depends: cython3, debhelper-compat (= 13), dh-python, freesasa (>= 2.1.0-2), libjson-c-dev, libxml2-dev, python3-all, python3-all-dev, python3-setuptools, python3-sphinx, python3-sphinx-rtd-theme, python3-pytest Package-List: python-freesasa-doc deb doc optional arch=all python3-freesasa deb python optional arch=any Checksums-Sha1: a3e6ea5f9b77a6e89c4adc30261996217c712d03 26680 python-freesasa_2.1.0.orig.tar.gz 54234e88bdb4d1071ad18aa3abd54a469dee48ba 6164 python-freesasa_2.1.0-3.debian.tar.xz Checksums-Sha256: 1babf5f5e6a8ee636b098e894a1fad8df7a93b0ac8145b028c95b632c9d02ac4 26680 python-freesasa_2.1.0.orig.tar.gz 514f942b8725e0a1559ac1f8a2d921e427023fe0ffff81b1b48899c28858832f 6164 python-freesasa_2.1.0-3.debian.tar.xz Files: e7645133cad48235ed6d01b29c6c1e3a 26680 python-freesasa_2.1.0.orig.tar.gz d683d24d6ad7e019066a56b26fd521fd 6164 python-freesasa_2.1.0-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEd8lhnEnWos3N8v+qQoMEoXSNzHoFAmOM3gUACgkQQoMEoXSN zHqyyA/8Cv10Hi1FqT083cR6Zq6NWhmiC35wqGEFX1Gtd2/k5B/pg8Q2eRXlRzVY ta+O+8tR8AQ3QMtkdx+toLhYdTZ9jpe8avBT0puA5xMO/5XNl2qi2QrB4i6j5MpZ VeQ7Nmk91SJHufrIGzvOaF9YXU9tGAc2v6W914mTpS/iyx9cs9r03RpSUaPeV/Ak vrv04kPOaa4BbSp6K6bjfmaUxAqNegGcvdBu+El7O+7MSHGUFTM4oGEd3PiyHJ9G 0Qlix0xKlKTWicC4F0vAdFa3oidpWi8Iu8fifWLxYVpAmCq+XNh3kk1IrZNQNBPc ieJQHfCPKv+lzFf1dIU8Rh/uO9PUPde8u6NdrImDR7tw6xWGPpK+pjedkLXqp1wo 23CGXn2s2uX6ox+gRgBoL4VgWeUnj/2pYdhw+lsbPuoE6tr/w15VaQvdNpQtuIqt Pk3CrTMfs98+0Kge0aj6Eqff1r8tOHvsATAZmSt8kEQM4emA8XDy+skMzPa8NhMY tzgIoYxaqeuNqOIb+cxOtAoQComKDSBzpd6i1mmnOdFS2sjpuMC6xdo1zpENkJxj rMW/e3j10hRGJobBlTbiojlRtc5zbq+zCmaOzMpJPzrMw3EbWcOskO9nL8CYeQj7 RrDQ8qA9phRHEyFVapRic4hgNKjyCErhMSbC5nwK4tFx+w/F3Zw= =fpRO -----END PGP SIGNATURE----- Thu Apr 13 02:20:17 UTC 2023 I: Checking whether the package is not for us Thu Apr 13 02:20:17 UTC 2023 I: Starting 1st build on remote node codethink15-arm64.debian.net. Thu Apr 13 02:20:17 UTC 2023 I: Preparing to do remote build '1' on codethink15-arm64.debian.net. Thu Apr 13 02:23:07 UTC 2023 I: Deleting $TMPDIR on codethink15-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue May 14 20:43:21 -12 2024 I: pbuilder-time-stamp: 1715762601 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-freesasa_2.1.0-3.dsc] I: copying [./python-freesasa_2.1.0.orig.tar.gz] I: copying [./python-freesasa_2.1.0-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Dec 4 05:51:01 2022 -12 gpgv: using RSA key 77C9619C49D6A2CDCDF2FFAA428304A1748DCC7A gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-freesasa_2.1.0-3.dsc: no acceptable signature found dpkg-source: info: extracting python-freesasa in python-freesasa-2.1.0 dpkg-source: info: unpacking python-freesasa_2.1.0.orig.tar.gz dpkg-source: info: unpacking python-freesasa_2.1.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no-privacy-breach.patch dpkg-source: info: applying build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/27625/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='27625' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TWOUN1OJ/pbuilderrc_hToP --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TWOUN1OJ/b1 --logfile b1/build.log python-freesasa_2.1.0-3.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink15-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 04:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/27625/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cython3, debhelper-compat (= 13), dh-python, freesasa (>= 2.1.0-2), libjson-c-dev, libxml2-dev, python3-all, python3-all-dev, python3-setuptools, python3-sphinx, python3-sphinx-rtd-theme, python3-pytest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on freesasa (>= 2.1.0-2); however: Package freesasa is not installed. pbuilder-satisfydepends-dummy depends on libjson-c-dev; however: Package libjson-c-dev is not installed. pbuilder-satisfydepends-dummy depends on libxml2-dev; however: Package libxml2-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-rtd-theme; however: Package python3-sphinx-rtd-theme is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fonts-font-awesome{a} fonts-lato{a} freesasa{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libicu-dev{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-c-dev{a} libjson-c5{a} libjson-perl{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} libxml2-dev{a} m4{a} man-db{a} media-types{a} openssl{a} po-debconf{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-dev{a} python3-distutils{a} python3-docutils{a} python3-idna{a} python3-imagesize{a} python3-iniconfig{a} python3-jinja2{a} python3-lib2to3{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pygments{a} python3-pytest{a} python3-requests{a} python3-roman{a} python3-setuptools{a} python3-six{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sphinx-rtd-theme{a} python3-tz{a} python3-urllib3{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} sphinx-rtd-theme-common{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx python3-pil wget 0 packages upgraded, 103 newly installed, 0 to remove and 0 not upgraded. Need to get 61.7 MB of archives. After unpacking 272 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 fonts-lato all 2.0-2.1 [2696 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-minimal arm64 3.11.2-6 [806 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 python3.11-minimal arm64 3.11.2-6 [1858 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 python3-minimal arm64 3.11.2-1+b1 [26.3 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 media-types all 10.0.0 [26.1 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-stdlib arm64 3.11.2-6 [1747 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 python3.11 arm64 3.11.2-6 [572 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 libpython3-stdlib arm64 3.11.2-1+b1 [9296 B] Get: 12 http://deb.debian.org/debian bookworm/main arm64 python3 arm64 3.11.2-1+b1 [26.3 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 sgml-base all 1.31 [15.4 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 openssl arm64 3.0.8-1 [1373 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 ca-certificates all 20230311 [153 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 cython3 arm64 0.29.32-2+b1 [1223 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 37 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 39 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.1+b3 [619 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 python3-distutils all 3.11.2-2 [131 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 dh-python all 5.20230130 [104 kB] Get: 50 http://deb.debian.org/debian bookworm/main arm64 xml-core all 0.18+nmu1 [23.8 kB] Get: 51 http://deb.debian.org/debian bookworm/main arm64 docutils-common all 0.19+dfsg-6 [127 kB] Get: 52 http://deb.debian.org/debian bookworm/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 53 http://deb.debian.org/debian bookworm/main arm64 libjson-c5 arm64 0.16-2 [42.9 kB] Get: 54 http://deb.debian.org/debian bookworm/main arm64 freesasa arm64 2.1.2-1 [443 kB] Get: 55 http://deb.debian.org/debian bookworm/main arm64 icu-devtools arm64 72.1-3 [192 kB] Get: 56 http://deb.debian.org/debian bookworm/main arm64 libexpat1-dev arm64 2.5.0-1 [135 kB] Get: 57 http://deb.debian.org/debian bookworm/main arm64 libicu-dev arm64 72.1-3 [10.2 MB] Get: 58 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 59 http://deb.debian.org/debian bookworm/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 60 http://deb.debian.org/debian bookworm/main arm64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 61 http://deb.debian.org/debian bookworm/main arm64 libjson-c-dev arm64 0.16-2 [70.9 kB] Get: 62 http://deb.debian.org/debian bookworm/main arm64 libjson-perl all 4.10000-1 [87.5 kB] Get: 63 http://deb.debian.org/debian bookworm/main arm64 libpython3.11 arm64 3.11.2-6 [1841 kB] Get: 64 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] Get: 65 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-dev arm64 3.11.2-6 [4395 kB] Get: 66 http://deb.debian.org/debian bookworm/main arm64 libpython3-dev arm64 3.11.2-1+b1 [9564 B] Get: 67 http://deb.debian.org/debian bookworm/main arm64 libpython3-all-dev arm64 3.11.2-1+b1 [1068 B] Get: 68 http://deb.debian.org/debian bookworm/main arm64 libxml2-dev arm64 2.9.14+dfsg-1.1+b3 [740 kB] Get: 69 http://deb.debian.org/debian bookworm/main arm64 python-babel-localedata all 2.10.3-1 [5615 kB] Get: 70 http://deb.debian.org/debian bookworm/main arm64 python3-alabaster all 0.7.12-1 [20.8 kB] Get: 71 http://deb.debian.org/debian bookworm/main arm64 python3-all arm64 3.11.2-1+b1 [1064 B] Get: 72 http://deb.debian.org/debian bookworm/main arm64 python3.11-dev arm64 3.11.2-6 [617 kB] Get: 73 http://deb.debian.org/debian bookworm/main arm64 python3-dev arm64 3.11.2-1+b1 [26.2 kB] Get: 74 http://deb.debian.org/debian bookworm/main arm64 python3-all-dev arm64 3.11.2-1+b1 [1076 B] Get: 75 http://deb.debian.org/debian bookworm/main arm64 python3-attr all 22.2.0-1 [65.4 kB] Get: 76 http://deb.debian.org/debian bookworm/main arm64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 77 http://deb.debian.org/debian bookworm/main arm64 python3-tz all 2022.7.1-1 [32.1 kB] Get: 78 http://deb.debian.org/debian bookworm/main arm64 python3-babel all 2.10.3-1 [103 kB] Get: 79 http://deb.debian.org/debian bookworm/main arm64 python3-certifi all 2022.9.24-1 [153 kB] Get: 80 http://deb.debian.org/debian bookworm/main arm64 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get: 81 http://deb.debian.org/debian bookworm/main arm64 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get: 82 http://deb.debian.org/debian bookworm/main arm64 python3-roman all 3.3-3 [9880 B] Get: 83 http://deb.debian.org/debian bookworm/main arm64 python3-docutils all 0.19+dfsg-6 [382 kB] Get: 84 http://deb.debian.org/debian bookworm/main arm64 python3-idna all 3.3-1 [39.4 kB] Get: 85 http://deb.debian.org/debian bookworm/main arm64 python3-imagesize all 1.4.1-1 [6688 B] Get: 86 http://deb.debian.org/debian bookworm/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 87 http://deb.debian.org/debian bookworm/main arm64 python3-markupsafe arm64 2.1.2-1+b1 [13.3 kB] Get: 88 http://deb.debian.org/debian bookworm/main arm64 python3-jinja2 all 3.1.2-1 [119 kB] Get: 89 http://deb.debian.org/debian bookworm/main arm64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 90 http://deb.debian.org/debian bookworm/main arm64 python3-packaging all 23.0-1 [32.5 kB] Get: 91 http://deb.debian.org/debian bookworm/main arm64 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 92 http://deb.debian.org/debian bookworm/main arm64 python3-py all 1.11.0-1 [89.2 kB] Get: 93 http://deb.debian.org/debian bookworm/main arm64 python3-pygments all 2.14.0+dfsg-1 [783 kB] Get: 94 http://deb.debian.org/debian bookworm/main arm64 python3-pytest all 7.2.1-2 [236 kB] Get: 95 http://deb.debian.org/debian bookworm/main arm64 python3-six all 1.16.0-4 [17.5 kB] Get: 96 http://deb.debian.org/debian bookworm/main arm64 python3-urllib3 all 1.26.12-1 [117 kB] Get: 97 http://deb.debian.org/debian bookworm/main arm64 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get: 98 http://deb.debian.org/debian bookworm/main arm64 python3-setuptools all 66.1.1-1 [521 kB] Get: 99 http://deb.debian.org/debian bookworm/main arm64 python3-snowballstemmer all 2.2.0-2 [57.8 kB] Get: 100 http://deb.debian.org/debian bookworm/main arm64 sphinx-common all 5.3.0-4 [653 kB] Get: 101 http://deb.debian.org/debian bookworm/main arm64 python3-sphinx all 5.3.0-4 [549 kB] Get: 102 http://deb.debian.org/debian bookworm/main arm64 sphinx-rtd-theme-common all 1.2.0+dfsg-1 [997 kB] Get: 103 http://deb.debian.org/debian bookworm/main arm64 python3-sphinx-rtd-theme all 1.2.0+dfsg-1 [27.7 kB] Fetched 61.7 MB in 1s (42.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../fonts-lato_2.0-2.1_all.deb ... Unpacking fonts-lato (2.0-2.1) ... Selecting previously unselected package libpython3.11-minimal:arm64. Preparing to unpack .../libpython3.11-minimal_3.11.2-6_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.2-6) ... Selecting previously unselected package libexpat1:arm64. 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Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../3-libreadline8_8.2-1.3_arm64.deb ... Unpacking libreadline8:arm64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:arm64. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_arm64.deb ... Unpacking libpython3.11-stdlib:arm64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_arm64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20392 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_arm64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../01-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../03-openssl_3.0.8-1_arm64.deb ... Unpacking openssl (3.0.8-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../04-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../06-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../07-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../08-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. 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Preparing to unpack .../69-python3-charset-normalizer_3.0.1-2_all.deb ... Unpacking python3-charset-normalizer (3.0.1-2) ... Selecting previously unselected package python3-roman. Preparing to unpack .../70-python3-roman_3.3-3_all.deb ... Unpacking python3-roman (3.3-3) ... Selecting previously unselected package python3-docutils. Preparing to unpack .../71-python3-docutils_0.19+dfsg-6_all.deb ... Unpacking python3-docutils (0.19+dfsg-6) ... Selecting previously unselected package python3-idna. Preparing to unpack .../72-python3-idna_3.3-1_all.deb ... Unpacking python3-idna (3.3-1) ... Selecting previously unselected package python3-imagesize. Preparing to unpack .../73-python3-imagesize_1.4.1-1_all.deb ... Unpacking python3-imagesize (1.4.1-1) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../74-python3-iniconfig_1.1.1-2_all.deb ... Unpacking python3-iniconfig (1.1.1-2) ... Selecting previously unselected package python3-markupsafe. Preparing to unpack .../75-python3-markupsafe_2.1.2-1+b1_arm64.deb ... Unpacking python3-markupsafe (2.1.2-1+b1) ... Selecting previously unselected package python3-jinja2. Preparing to unpack .../76-python3-jinja2_3.1.2-1_all.deb ... Unpacking python3-jinja2 (3.1.2-1) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../77-python3-more-itertools_8.10.0-2_all.deb ... Unpacking python3-more-itertools (8.10.0-2) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../78-python3-packaging_23.0-1_all.deb ... Unpacking python3-packaging (23.0-1) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../79-python3-pluggy_1.0.0+repack-1_all.deb ... Unpacking python3-pluggy (1.0.0+repack-1) ... Selecting previously unselected package python3-py. Preparing to unpack .../80-python3-py_1.11.0-1_all.deb ... Unpacking python3-py (1.11.0-1) ... Selecting previously unselected package python3-pygments. Preparing to unpack .../81-python3-pygments_2.14.0+dfsg-1_all.deb ... Unpacking python3-pygments (2.14.0+dfsg-1) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../82-python3-pytest_7.2.1-2_all.deb ... Unpacking python3-pytest (7.2.1-2) ... Selecting previously unselected package python3-six. Preparing to unpack .../83-python3-six_1.16.0-4_all.deb ... Unpacking python3-six (1.16.0-4) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../84-python3-urllib3_1.26.12-1_all.deb ... Unpacking python3-urllib3 (1.26.12-1) ... Selecting previously unselected package python3-requests. Preparing to unpack .../85-python3-requests_2.28.1+dfsg-1_all.deb ... Unpacking python3-requests (2.28.1+dfsg-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../86-python3-setuptools_66.1.1-1_all.deb ... Unpacking python3-setuptools (66.1.1-1) ... Selecting previously unselected package python3-snowballstemmer. Preparing to unpack .../87-python3-snowballstemmer_2.2.0-2_all.deb ... Unpacking python3-snowballstemmer (2.2.0-2) ... Selecting previously unselected package sphinx-common. Preparing to unpack .../88-sphinx-common_5.3.0-4_all.deb ... Unpacking sphinx-common (5.3.0-4) ... Selecting previously unselected package python3-sphinx. Preparing to unpack .../89-python3-sphinx_5.3.0-4_all.deb ... Unpacking python3-sphinx (5.3.0-4) ... Selecting previously unselected package sphinx-rtd-theme-common. Preparing to unpack .../90-sphinx-rtd-theme-common_1.2.0+dfsg-1_all.deb ... Unpacking sphinx-rtd-theme-common (1.2.0+dfsg-1) ... Selecting previously unselected package python3-sphinx-rtd-theme. Preparing to unpack .../91-python3-sphinx-rtd-theme_1.2.0+dfsg-1_all.deb ... Unpacking python3-sphinx-rtd-theme (1.2.0+dfsg-1) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up fonts-lato (2.0-2.1) ... Setting up libicu72:arm64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up python-babel-localedata (2.10.3-1) ... Setting up autotools-dev (20220109.1) ... Setting up libexpat1-dev:arm64 (2.5.0-1) ... Setting up autopoint (0.21-12) ... Setting up icu-devtools (72.1-3) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:arm64 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libjson-perl (4.10000-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up sgml-base (1.31) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.0.8-1) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up libjson-c5:arm64 (0.16-2) ... Setting up readline-common (8.2-1.3) ... Setting up libicu-dev:arm64 (72.1-3) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.1+b3) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (1.2.0+dfsg-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libjson-c-dev:arm64 (0.16-2) ... Setting up libreadline8:arm64 (8.2-1.3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up freesasa (2.1.2-1) ... Setting up libxml2-dev:arm64 (2.9.14+dfsg-1.1+b3) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up xml-core (0.18+nmu1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.2-6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up sphinx-common (5.3.0-4) ... Setting up libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libpython3.11:arm64 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-markupsafe (2.1.2-1+b1) ... Setting up python3-tz (2022.7.1-1) ... Setting up python3-six (1.16.0-4) ... Setting up python3-roman (3.3-3) ... Setting up python3-jinja2 (3.1.2-1) ... Setting up python3-packaging (23.0-1) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-snowballstemmer (2.2.0-2) ... Setting up libpython3.11-dev:arm64 (3.11.2-6) ... Setting up python3-idna (3.3-1) ... Setting up cython3 (0.29.32-2+b1) ... Setting up python3-urllib3 (1.26.12-1) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-lib2to3 (3.11.2-2) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-2) ... Setting up dh-python (5.20230130) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (22.2.0-1) ... Setting up libpython3-dev:arm64 (3.11.2-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-babel (2.10.3-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3.11-dev (3.11.2-6) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-alabaster (0.7.12-1) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-pygments (2.14.0+dfsg-1) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up libpython3-all-dev:arm64 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up python3-all-dev (3.11.2-1+b1) ... Processing triggers for libc-bin (2.36-8) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.19+dfsg-6) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.19+dfsg-6) ... Setting up python3-sphinx (5.3.0-4) ... Setting up python3-sphinx-rtd-theme (1.2.0+dfsg-1) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-freesasa-2.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-freesasa_2.1.0-3_source.changes dpkg-buildpackage: info: source package python-freesasa dpkg-buildpackage: info: source version 2.1.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Emmanuel Arias dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem pybuild --with python3,sphinxdoc dh_auto_clean -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py clean /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-freesasa-2.1.0/src/freesasa.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling src/freesasa.pyx because it changed. [1/1] Cythonizing src/freesasa.pyx running clean removing '/build/python-freesasa-2.1.0/.pybuild/cpython3_3.11_freesasa/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/python-freesasa-2.1.0' dh_clean rm -rf docs/build freesasa.egg-info lib make[1]: Leaving directory '/build/python-freesasa-2.1.0' debian/rules binary dh binary --buildsystem pybuild --with python3,sphinxdoc dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-freesasa-2.1.0/src/freesasa.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling src/freesasa.pyx because it changed. [1/1] Cythonizing src/freesasa.pyx running config debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/python-freesasa-2.1.0' dh_auto_build I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_ext building 'freesasa' extension creating build creating build/temp.linux-arm64-cpython-311 creating build/temp.linux-arm64-cpython-311/src aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-freesasa-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilib/src -I. -I/usr/include/python3.11 -c src/freesasa.c -o build/temp.linux-arm64-cpython-311/src/freesasa.o -DHAVE_CONFIG_H -std=gnu99 aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-freesasa-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-cpython-311/src/freesasa.o -L/usr/lib/aarch64-linux-gnu -o /build/python-freesasa-2.1.0/.pybuild/cpython3_3.11_freesasa/build/freesasa.cpython-311-aarch64-linux-gnu.so -lfreesasa -lxml2 -ljson-c /usr/bin/make --directory docs html make[2]: Entering directory '/build/python-freesasa-2.1.0/docs' running build_ext building 'freesasa' extension creating build/temp.linux-aarch64-cpython-311 creating build/temp.linux-aarch64-cpython-311/src aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-freesasa-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilib/src -I. -I/usr/include/python3.11 -c src/freesasa.c -o build/temp.linux-aarch64-cpython-311/src/freesasa.o -DHAVE_CONFIG_H -std=gnu99 creating build/lib.linux-aarch64-cpython-311 aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-freesasa-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/src/freesasa.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-311/freesasa.cpython-311-aarch64-linux-gnu.so -lfreesasa -lxml2 -ljson-c copying build/lib.linux-aarch64-cpython-311/freesasa.cpython-311-aarch64-linux-gnu.so -> Running Sphinx v5.3.0 WARNING: Invalid configuration value found: 'language = None'. Update your configuration to a valid language code. Falling back to 'en' (English). making output directory... done WARNING: html_static_path entry '_static' does not exist [autosummary] generating autosummary for: classes.rst, functions.rst, index.rst, intro.rst building [mo]: targets for 0 po files that are out of date building [html]: targets for 4 source files that are out of date updating environment: [new config] 4 added, 0 changed, 0 removed reading sources... [ 25%] classes reading sources... [ 50%] functions reading sources... [ 75%] index reading sources... [100%] intro looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 25%] classes writing output... [ 50%] functions writing output... [ 75%] index writing output... [100%] intro generating indices... genindex done writing additional pages... search done copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 2 warnings. The HTML pages are in build/html. make[2]: Leaving directory '/build/python-freesasa-2.1.0/docs' make[1]: Leaving directory '/build/python-freesasa-2.1.0' dh_auto_build -O--buildsystem=pybuild -Npython-freesasa-doc I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_ext dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:307: set -e; mkdir --parents /build/python-freesasa-2.1.0/.pybuild/cpython3_3.11_freesasa/build/lib/tests; ln -s /usr/share/freesasa/test-data /build/python-freesasa-2.1.0/.pybuild/cpython3_3.11_freesasa/build/lib/tests/data; ln -s /usr/share/freesasa /build/python-freesasa-2.1.0/.pybuild/cpython3_3.11_freesasa/build/lib/share; cp test.py /build/python-freesasa-2.1.0/.pybuild/cpython3_3.11_freesasa/build; I: pybuild base:240: cd /build/python-freesasa-2.1.0/.pybuild/cpython3_3.11_freesasa/build; python3.11 -m pytest test.py ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack rootdir: /build/python-freesasa-2.1.0 collected 9 items test.py ......... [100%] ============================== 9 passed in 0.65s =============================== I: pybuild pybuild:333: rm -f /build/python-freesasa-2.1.0/.pybuild/cpython3_3.11_freesasa/build/test.py; rm /build/python-freesasa-2.1.0/.pybuild/cpython3_3.11_freesasa/build/lib -r create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/python-freesasa-2.1.0/debian/python3-freesasa running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_ext running install_lib creating /build/python-freesasa-2.1.0/debian/python3-freesasa creating /build/python-freesasa-2.1.0/debian/python3-freesasa/usr creating /build/python-freesasa-2.1.0/debian/python3-freesasa/usr/lib creating /build/python-freesasa-2.1.0/debian/python3-freesasa/usr/lib/python3.11 creating /build/python-freesasa-2.1.0/debian/python3-freesasa/usr/lib/python3.11/dist-packages creating /build/python-freesasa-2.1.0/debian/python3-freesasa/usr/lib/python3.11/dist-packages/__pycache__ copying /build/python-freesasa-2.1.0/.pybuild/cpython3_3.11_freesasa/build/__pycache__/test.cpython-311-pytest-7.2.1.pyc -> /build/python-freesasa-2.1.0/debian/python3-freesasa/usr/lib/python3.11/dist-packages/__pycache__ copying /build/python-freesasa-2.1.0/.pybuild/cpython3_3.11_freesasa/build/freesasa.cpython-311-aarch64-linux-gnu.so -> /build/python-freesasa-2.1.0/debian/python3-freesasa/usr/lib/python3.11/dist-packages running install_egg_info running egg_info creating freesasa.egg-info writing freesasa.egg-info/PKG-INFO writing dependency_links to freesasa.egg-info/dependency_links.txt writing top-level names to freesasa.egg-info/top_level.txt writing manifest file 'freesasa.egg-info/SOURCES.txt' reading manifest file 'freesasa.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'freesasa.egg-info/SOURCES.txt' Copying freesasa.egg-info to /build/python-freesasa-2.1.0/debian/python3-freesasa/usr/lib/python3.11/dist-packages/freesasa-2.1.0.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_installdocs-indep make[1]: Entering directory '/build/python-freesasa-2.1.0' dh_installdocs dh_installdocs -p python-freesasa-doc --doc-main-package python3-freesasa docs/build/html make[1]: Leaving directory '/build/python-freesasa-2.1.0' dh_installdocs -O--buildsystem=pybuild -Npython-freesasa-doc dh_sphinxdoc -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-freesasa-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dpkg-gencontrol: warning: Provides field of package python3-freesasa: substitution variable ${python3:Provides} used, but is not defined dpkg-gencontrol: warning: Provides field of package python3-freesasa: substitution variable ${python3:Provides} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python-freesasa-doc' in '../python-freesasa-doc_2.1.0-3_all.deb'. dpkg-deb: building package 'python3-freesasa-dbgsym' in '../python3-freesasa-dbgsym_2.1.0-3_arm64.deb'. dpkg-deb: building package 'python3-freesasa' in '../python3-freesasa_2.1.0-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../python-freesasa_2.1.0-3_arm64.buildinfo dpkg-genchanges --build=binary -O../python-freesasa_2.1.0-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/27625 and its subdirectories I: Current time: Tue May 14 20:46:04 -12 2024 I: pbuilder-time-stamp: 1715762764 Thu Apr 13 02:23:09 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink10-arm64.debian.net. Thu Apr 13 02:23:09 UTC 2023 I: Preparing to do remote build '2' on codethink10-arm64.debian.net. Thu Apr 13 02:25:49 UTC 2023 I: Deleting $TMPDIR on codethink10-arm64.debian.net. Thu Apr 13 02:25:49 UTC 2023 I: python-freesasa_2.1.0-3_arm64.changes: Format: 1.8 Date: Sun, 04 Dec 2022 17:19:35 +0000 Source: python-freesasa Binary: python-freesasa-doc python3-freesasa python3-freesasa-dbgsym Architecture: all arm64 Version: 2.1.0-3 Distribution: unstable Urgency: medium Maintainer: Debian Python Team Changed-By: Emmanuel Arias Description: python-freesasa-doc - Python bindings for FreeSASA (common documentation) python3-freesasa - Python bindings for FreeSASA (Python 3) Changes: python-freesasa (2.1.0-3) unstable; urgency=medium . [ Emmanuel Arias ] * Team upload * d/rules: Stop using 'python3 setup.py test' to run test suite. Use pytest instead. * d/control: Add python3-pytest as Build-Depends. . [ Jeroen Ploemen ] * Tests: rewrite autopkgtest, loop over all supported Python versions. * Control: remove Testsuite: autopkgtest-pkg-python, package comes with a non-trivial autopkgtest. Checksums-Sha1: b4fea18a4eaf3c3287c79d25f8291fa9b50841c2 27564 python-freesasa-doc_2.1.0-3_all.deb a2e7558b0739cf7ed395c9a0d4235de86808156b 7909 python-freesasa_2.1.0-3_arm64.buildinfo 096337c65f1c23a373a8f201bdd74aaa6c0cc801 310900 python3-freesasa-dbgsym_2.1.0-3_arm64.deb 74823cf1bf692f583c556b498668bb294bcc35fc 115596 python3-freesasa_2.1.0-3_arm64.deb Checksums-Sha256: c8229710c72249ef072a3311befcd794c9d22ba7be82351426dd6bee1d836dc3 27564 python-freesasa-doc_2.1.0-3_all.deb 8d18078807bf88165a00b8e6b2c893c97ddf2baf93589934eea9920501c308ef 7909 python-freesasa_2.1.0-3_arm64.buildinfo 87dfd2da26fb3ff8b5618996aa8c04656ccc014420db9a294b2018b5a48390dc 310900 python3-freesasa-dbgsym_2.1.0-3_arm64.deb af25c6994438d0fc4f3178923b0cb3bc5d0c85232bf53b603624c2dff2e97265 115596 python3-freesasa_2.1.0-3_arm64.deb Files: ebdde271a29b72798423d2e69e1089e0 27564 doc optional python-freesasa-doc_2.1.0-3_all.deb acd79caeac9868a15f9c2f832ad04ae6 7909 python optional python-freesasa_2.1.0-3_arm64.buildinfo 574afb1e8476c29d272f86c028fa9e38 310900 debug optional python3-freesasa-dbgsym_2.1.0-3_arm64.deb 9c106feb32ef595e22710dd08e6b4c0f 115596 python optional python3-freesasa_2.1.0-3_arm64.deb Thu Apr 13 02:25:50 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.TWOUN1OJ/python-freesasa_2.1.0-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.TWOUN1OJ/python-freesasa_2.1.0-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.TWOUN1OJ/python-freesasa_2.1.0-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.TWOUN1OJ/b1/python-freesasa_2.1.0-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.TWOUN1OJ/b2/python-freesasa_2.1.0-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.316s) 0.316s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.021s) 0.021s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Thu Apr 13 02:25:51 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Thu Apr 13 02:25:51 UTC 2023 I: python-freesasa from bookworm built successfully and reproducibly on arm64. Thu Apr 13 02:25:52 UTC 2023 I: Submitting .buildinfo files to external archives: Thu Apr 13 02:25:52 UTC 2023 I: Submitting 12K b1/python-freesasa_2.1.0-3_arm64.buildinfo.asc Thu Apr 13 02:25:54 UTC 2023 I: Submitting 12K b2/python-freesasa_2.1.0-3_arm64.buildinfo.asc Thu Apr 13 02:25:55 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Apr 13 02:25:55 UTC 2023 I: Done submitting .buildinfo files. Thu Apr 13 02:25:55 UTC 2023 I: Removing signed python-freesasa_2.1.0-3_arm64.buildinfo.asc files: removed './b1/python-freesasa_2.1.0-3_arm64.buildinfo.asc' removed './b2/python-freesasa_2.1.0-3_arm64.buildinfo.asc'