Wed May 3 00:47:04 UTC 2023 I: starting to build python-bcbio-gff/bookworm/arm64 on jenkins on '2023-05-03 00:46' Wed May 3 00:47:04 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_9/8206/console.log Wed May 3 00:47:04 UTC 2023 I: Downloading source for bookworm/python-bcbio-gff=0.6.9-1 --2023-05-03 00:47:04-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-bcbio-gff/python-bcbio-gff_0.6.9-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2254 (2.2K) [text/prs.lines.tag] Saving to: ‘python-bcbio-gff_0.6.9-1.dsc’ 0K .. 100% 146M=0s 2023-05-03 00:47:04 (146 MB/s) - ‘python-bcbio-gff_0.6.9-1.dsc’ saved [2254/2254] Wed May 3 00:47:04 UTC 2023 I: python-bcbio-gff_0.6.9-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-bcbio-gff Binary: python3-bcbio-gff Architecture: all Version: 0.6.9-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/chapmanb/bcbb/tree/master/gff Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/python-bcbio-gff Vcs-Git: https://salsa.debian.org/med-team/python-bcbio-gff.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: python3-all, tar Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-biopython, python3-six, debhelper Package-List: python3-bcbio-gff deb python optional arch=all Checksums-Sha1: 1cbc7ede1c10a2d244a23f21b6cd5abf5fb4ef6b 44236 python-bcbio-gff_0.6.9.orig.tar.gz 6410b13fdcba4746aa68b8cb6cf5096c3947fc20 20832 python-bcbio-gff_0.6.9-1.debian.tar.xz Checksums-Sha256: 34dfa970e14f4533dc63c0a5512b7b5221e4a06449e6aaa344162ed5fdd7a1de 44236 python-bcbio-gff_0.6.9.orig.tar.gz a68deede19dbf37bf8f44e035ae114adfe4e3d9ad14bcd51d45afc91479b0a21 20832 python-bcbio-gff_0.6.9-1.debian.tar.xz Files: 2b8c9822c89b36befc38eec39edc713f 44236 python-bcbio-gff_0.6.9.orig.tar.gz 70ca9e1a44445a58e97e4101b73e7e18 20832 python-bcbio-gff_0.6.9-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmHkQegUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrJnQ/+NXiyHOloji8PTtGydWmdirR0Y7Ok EsyjZJvjCRlKbOlHsrvm8DrK4J4F7oNszQr3w8DrqA0oU44mZq5APp2B5gwDuUsB hg6MLVLCrBQER2oHiUCOvkokKrdK+v8almG67ktkvaIbs1TOiEVylMhQ2M/MNSaC xeeu3eJTQkJ5r25h0X5eaqAiVCAxZCiqjbO/Ej+y87TGtvXQmvZ2Gzov8XQF6Ar3 A+dldv4qDK/ahDyfXn8LqqwFN2ufipf1pft0Q1F4mw5f2iuD+CE3VSeNUa8gH2O0 lDJEE7vgq4752N/fUEWgcF5rGHxb7fbwpSeUgSNS8lVJKAvfIfuaLSw6uXSeNSLc /7aJfIsdo4R7KBpNlCJy02vjNhiXIY2Ly24mLPI/WhGkvAkjFucdon02vDxUvwAD WDUg9ljH6vgrdBrojNTwS2CAoWrvxoq968X/bk2jhy4/OX1AO4Gtw3jBI0CIato/ IRMVmtOgFpQJJpP/61cdabh4UmmtH/17g1ymj0T6LoXell5lKo7z4Uz0FllZFw3P OhnvJsHPxgMqj6XHESUxVFjbxdr3zdnMbYrTwZ49q3TZAOHBagU/7P6GBo2vkla/ VgVgO13VCp3sOcGZ/tkn+QgOrwPKTr7HxJRYLQdB+gjuevJlHwU+LhxRfgmHMqmn ADHNAvc1Jhyn2VM= =uciz -----END PGP SIGNATURE----- Wed May 3 00:47:04 UTC 2023 I: Checking whether the package is not for us Wed May 3 00:47:04 UTC 2023 I: Starting 1st build on remote node codethink11-arm64.debian.net. Wed May 3 00:47:04 UTC 2023 I: Preparing to do remote build '1' on codethink11-arm64.debian.net. Wed May 3 00:50:14 UTC 2023 I: Deleting $TMPDIR on codethink11-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jun 3 19:10:09 -12 2024 I: pbuilder-time-stamp: 1717485009 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-bcbio-gff_0.6.9-1.dsc] I: copying [./python-bcbio-gff_0.6.9.orig.tar.gz] I: copying [./python-bcbio-gff_0.6.9-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Jan 16 04:03:52 2022 -12 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-bcbio-gff_0.6.9-1.dsc: no acceptable signature found dpkg-source: info: extracting python-bcbio-gff in python-bcbio-gff-0.6.9 dpkg-source: info: unpacking python-bcbio-gff_0.6.9.orig.tar.gz dpkg-source: info: unpacking python-bcbio-gff_0.6.9-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/12921/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='12921' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zjgXJ8Ut/pbuilderrc_6Mcm --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zjgXJ8Ut/b1 --logfile b1/build.log python-bcbio-gff_0.6.9-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink11-arm64 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 2 04:48 /bin -> usr/bin I: user script /srv/workspace/pbuilder/12921/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-biopython, python3-six, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-six; however: Package python3-six is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libopenjp2-7{a} libpipeline1{a} libpng16-16{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libraqm0{a} libreadline8{a} libsub-override-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} po-debconf{a} python3{a} python3-all{a} python3-biopython{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-renderpm{a} python3-reportlab{a} python3-reportlab-accel{a} python3-setuptools{a} python3-six{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 90 newly installed, 0 to remove and 0 not upgraded. Need to get 52.6 MB of archives. After unpacking 192 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-minimal arm64 3.11.2-6 [806 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 python3.11-minimal arm64 3.11.2-6 [1858 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 python3-minimal arm64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 mailcap all 3.70+nmu1 [32.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 mime-support all 3.66 [10.9 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-stdlib arm64 3.11.2-6 [1747 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 python3.11 arm64 3.11.2-6 [572 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 libpython3-stdlib arm64 3.11.2-1+b1 [9296 B] Get: 13 http://deb.debian.org/debian bookworm/main arm64 python3 arm64 3.11.2-1+b1 [26.3 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 sgml-base all 1.31 [15.4 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 35 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 37 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 python3-distutils all 3.11.2-2 [131 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 dh-python all 5.20230130 [104 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 libfontenc1 arm64 1:1.1.4-1 [23.6 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB] Get: 50 http://deb.debian.org/debian bookworm/main arm64 libpng16-16 arm64 1.6.39-2 [269 kB] Get: 51 http://deb.debian.org/debian bookworm/main arm64 libfreetype6 arm64 2.12.1+dfsg-5 [369 kB] Get: 52 http://deb.debian.org/debian bookworm/main arm64 x11-common all 1:7.7+23 [252 kB] Get: 53 http://deb.debian.org/debian bookworm/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 54 http://deb.debian.org/debian bookworm/main arm64 xfonts-utils arm64 1:7.7+6 [85.6 kB] Get: 55 http://deb.debian.org/debian bookworm/main arm64 fonts-urw-base35 all 20200910-7 [10.8 MB] Get: 56 http://deb.debian.org/debian bookworm/main arm64 libblas3 arm64 3.11.0-2 [91.4 kB] Get: 57 http://deb.debian.org/debian bookworm/main arm64 libbsd0 arm64 0.11.7-2 [115 kB] Get: 58 http://deb.debian.org/debian bookworm/main arm64 libdeflate0 arm64 1.14-1 [54.3 kB] Get: 59 http://deb.debian.org/debian bookworm/main arm64 libfribidi0 arm64 1.0.8-2.1 [64.9 kB] Get: 60 http://deb.debian.org/debian bookworm/main arm64 libgfortran5 arm64 12.2.0-14 [340 kB] Get: 61 http://deb.debian.org/debian bookworm/main arm64 libglib2.0-0 arm64 2.74.6-2 [1310 kB] Get: 62 http://deb.debian.org/debian bookworm/main arm64 libgraphite2-3 arm64 1.3.14-1 [75.6 kB] Get: 63 http://deb.debian.org/debian bookworm/main arm64 libharfbuzz0b arm64 6.0.0+dfsg-3 [1914 kB] Get: 64 http://deb.debian.org/debian bookworm/main arm64 libimagequant0 arm64 2.17.0-1 [31.3 kB] Get: 65 http://deb.debian.org/debian bookworm/main arm64 libjbig0 arm64 2.1-6.1 [30.0 kB] Get: 66 http://deb.debian.org/debian bookworm/main arm64 libjpeg62-turbo arm64 1:2.1.5-2 [171 kB] Get: 67 http://deb.debian.org/debian bookworm/main arm64 liblapack3 arm64 3.11.0-2 [1664 kB] Get: 68 http://deb.debian.org/debian bookworm/main arm64 liblcms2-2 arm64 2.14-2 [143 kB] Get: 69 http://deb.debian.org/debian bookworm/main arm64 liblerc4 arm64 4.0.0+ds-2 [138 kB] Get: 70 http://deb.debian.org/debian bookworm/main arm64 libopenjp2-7 arm64 2.5.0-1+b1 [176 kB] Get: 71 http://deb.debian.org/debian bookworm/main arm64 libraqm0 arm64 0.7.0-4.1 [10.4 kB] Get: 72 http://deb.debian.org/debian bookworm/main arm64 libwebp7 arm64 1.2.4-0.1 [259 kB] Get: 73 http://deb.debian.org/debian bookworm/main arm64 libtiff6 arm64 4.5.0-5 [300 kB] Get: 74 http://deb.debian.org/debian bookworm/main arm64 libwebpdemux2 arm64 1.2.4-0.1 [99.1 kB] Get: 75 http://deb.debian.org/debian bookworm/main arm64 libwebpmux3 arm64 1.2.4-0.1 [109 kB] Get: 76 http://deb.debian.org/debian bookworm/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 77 http://deb.debian.org/debian bookworm/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 78 http://deb.debian.org/debian bookworm/main arm64 libxcb1 arm64 1.15-1 [143 kB] Get: 79 http://deb.debian.org/debian bookworm/main arm64 python3-all arm64 3.11.2-1+b1 [1064 B] Get: 80 http://deb.debian.org/debian bookworm/main arm64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 81 http://deb.debian.org/debian bookworm/main arm64 python3-numpy arm64 1:1.24.2-1 [4751 kB] Get: 82 http://deb.debian.org/debian bookworm/main arm64 python3-renderpm arm64 3.6.12-1+b1 [73.5 kB] Get: 83 http://deb.debian.org/debian bookworm/main arm64 python3-reportlab-accel arm64 3.6.12-1+b1 [38.4 kB] Get: 84 http://deb.debian.org/debian bookworm/main arm64 python3-pil arm64 9.4.0-1.1+b1 [452 kB] Get: 85 http://deb.debian.org/debian bookworm/main arm64 python3-reportlab all 3.6.12-1 [564 kB] Get: 86 http://deb.debian.org/debian bookworm/main arm64 xml-core all 0.18+nmu1 [23.8 kB] Get: 87 http://deb.debian.org/debian bookworm/main arm64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 88 http://deb.debian.org/debian bookworm/main arm64 python3-biopython arm64 1.80+dfsg-4+b1 [1580 kB] Get: 89 http://deb.debian.org/debian bookworm/main arm64 python3-setuptools all 66.1.1-1 [521 kB] Get: 90 http://deb.debian.org/debian bookworm/main arm64 python3-six all 1.16.0-4 [17.5 kB] Fetched 52.6 MB in 1s (37.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.2-6) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.5.0-1_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. 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Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libmagic1:arm64 (1:5.44-3) ... Setting up libdeflate0:arm64 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libjbig0:arm64 (2.1-6.1) ... Setting up libfontenc1:arm64 (1:1.1.4-1) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.11.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libjpeg62-turbo:arm64 (1:2.1.5-2) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:arm64 (1.0.8-2.1) ... Setting up libimagequant0:arm64 (2.17.0-1) ... Setting up libpng16-16:arm64 (1.6.39-2) ... Setting up autopoint (0.21-12) ... Setting up libgfortran5:arm64 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:arm64 (1.2.4-0.1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libtiff6:arm64 (4.5.0-5) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libopenjp2-7:arm64 (2.5.0-1+b1) ... Setting up libsub-override-perl (0.09-4) ... Setting up sgml-base (1.31) ... Setting up libwebpmux3:arm64 (1.2.4-0.1) ... Setting up libbsd0:arm64 (0.11.7-2) ... Setting up mailcap (3.70+nmu1) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up liblapack3:arm64 (3.11.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.7-5) ... Setting up libwebpdemux2:arm64 (1.2.4-0.1) ... Setting up libreadline8:arm64 (8.2-1.3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libfreetype6:arm64 (2.12.1+dfsg-5) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up xml-core (0.18+nmu1) ... Setting up libharfbuzz0b:arm64 (6.0.0+dfsg-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.2-6) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libraqm0:arm64 (0.7.0-4.1) ... Setting up libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up python3-six (1.16.0-4) ... Setting up python3-pil:arm64 (9.4.0-1.1+b1) ... Setting up python3-reportlab-accel:arm64 (3.6.12-1+b1) ... Setting up python3-reportlab (3.6.12-1) ... Setting up python3-lib2to3 (3.11.2-2) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-2) ... Setting up dh-python (5.20230130) ... Setting up python3-renderpm:arm64 (3.6.12-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-numpy (1:1.24.2-1) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.80+dfsg-4+b1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-bcbio-gff-0.6.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-bcbio-gff_0.6.9-1_source.changes dpkg-buildpackage: info: source package python-bcbio-gff dpkg-buildpackage: info: source version 0.6.9-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py clean running clean removing '/build/python-bcbio-gff-0.6.9/.pybuild/cpython3_3.11_bcbio-gff/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /build/python-bcbio-gff-0.6.9/.pybuild/cpython3_3.11_bcbio-gff/build/BCBio copying BCBio/__init__.py -> /build/python-bcbio-gff-0.6.9/.pybuild/cpython3_3.11_bcbio-gff/build/BCBio creating /build/python-bcbio-gff-0.6.9/.pybuild/cpython3_3.11_bcbio-gff/build/BCBio/GFF copying BCBio/GFF/_utils.py -> /build/python-bcbio-gff-0.6.9/.pybuild/cpython3_3.11_bcbio-gff/build/BCBio/GFF copying BCBio/GFF/__init__.py -> /build/python-bcbio-gff-0.6.9/.pybuild/cpython3_3.11_bcbio-gff/build/BCBio/GFF copying BCBio/GFF/GFFParser.py -> /build/python-bcbio-gff-0.6.9/.pybuild/cpython3_3.11_bcbio-gff/build/BCBio/GFF copying BCBio/GFF/GFFOutput.py -> /build/python-bcbio-gff-0.6.9/.pybuild/cpython3_3.11_bcbio-gff/build/BCBio/GFF dh_auto_test -O--buildsystem=pybuild I: pybuild base:240: cd /build/python-bcbio-gff-0.6.9/.pybuild/cpython3_3.11_bcbio-gff/build; python3.11 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-bcbio-gff/ -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/python-bcbio-gff-0.6.9/debian/python3-bcbio-gff running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running install_lib creating /build/python-bcbio-gff-0.6.9/debian/python3-bcbio-gff/usr creating /build/python-bcbio-gff-0.6.9/debian/python3-bcbio-gff/usr/lib creating /build/python-bcbio-gff-0.6.9/debian/python3-bcbio-gff/usr/lib/python3.11 creating /build/python-bcbio-gff-0.6.9/debian/python3-bcbio-gff/usr/lib/python3.11/dist-packages creating /build/python-bcbio-gff-0.6.9/debian/python3-bcbio-gff/usr/lib/python3.11/dist-packages/BCBio creating /build/python-bcbio-gff-0.6.9/debian/python3-bcbio-gff/usr/lib/python3.11/dist-packages/BCBio/__pycache__ copying /build/python-bcbio-gff-0.6.9/.pybuild/cpython3_3.11_bcbio-gff/build/BCBio/__pycache__/__init__.cpython-311.pyc -> /build/python-bcbio-gff-0.6.9/debian/python3-bcbio-gff/usr/lib/python3.11/dist-packages/BCBio/__pycache__ creating /build/python-bcbio-gff-0.6.9/debian/python3-bcbio-gff/usr/lib/python3.11/dist-packages/BCBio/GFF creating /build/python-bcbio-gff-0.6.9/debian/python3-bcbio-gff/usr/lib/python3.11/dist-packages/BCBio/GFF/__pycache__ copying /build/python-bcbio-gff-0.6.9/.pybuild/cpython3_3.11_bcbio-gff/build/BCBio/GFF/__pycache__/GFFOutput.cpython-311.pyc -> /build/python-bcbio-gff-0.6.9/debian/python3-bcbio-gff/usr/lib/python3.11/dist-packages/BCBio/GFF/__pycache__ copying /build/python-bcbio-gff-0.6.9/.pybuild/cpython3_3.11_bcbio-gff/build/BCBio/GFF/__pycache__/GFFParser.cpython-311.pyc -> /build/python-bcbio-gff-0.6.9/debian/python3-bcbio-gff/usr/lib/python3.11/dist-packages/BCBio/GFF/__pycache__ copying /build/python-bcbio-gff-0.6.9/.pybuild/cpython3_3.11_bcbio-gff/build/BCBio/GFF/__pycache__/__init__.cpython-311.pyc -> /build/python-bcbio-gff-0.6.9/debian/python3-bcbio-gff/usr/lib/python3.11/dist-packages/BCBio/GFF/__pycache__ copying /build/python-bcbio-gff-0.6.9/.pybuild/cpython3_3.11_bcbio-gff/build/BCBio/GFF/GFFOutput.py -> /build/python-bcbio-gff-0.6.9/debian/python3-bcbio-gff/usr/lib/python3.11/dist-packages/BCBio/GFF copying /build/python-bcbio-gff-0.6.9/.pybuild/cpython3_3.11_bcbio-gff/build/BCBio/GFF/GFFParser.py -> /build/python-bcbio-gff-0.6.9/debian/python3-bcbio-gff/usr/lib/python3.11/dist-packages/BCBio/GFF copying /build/python-bcbio-gff-0.6.9/.pybuild/cpython3_3.11_bcbio-gff/build/BCBio/GFF/__init__.py -> /build/python-bcbio-gff-0.6.9/debian/python3-bcbio-gff/usr/lib/python3.11/dist-packages/BCBio/GFF copying /build/python-bcbio-gff-0.6.9/.pybuild/cpython3_3.11_bcbio-gff/build/BCBio/GFF/_utils.py -> /build/python-bcbio-gff-0.6.9/debian/python3-bcbio-gff/usr/lib/python3.11/dist-packages/BCBio/GFF copying /build/python-bcbio-gff-0.6.9/.pybuild/cpython3_3.11_bcbio-gff/build/BCBio/__init__.py -> /build/python-bcbio-gff-0.6.9/debian/python3-bcbio-gff/usr/lib/python3.11/dist-packages/BCBio byte-compiling /build/python-bcbio-gff-0.6.9/debian/python3-bcbio-gff/usr/lib/python3.11/dist-packages/BCBio/GFF/GFFOutput.py to GFFOutput.cpython-311.pyc byte-compiling /build/python-bcbio-gff-0.6.9/debian/python3-bcbio-gff/usr/lib/python3.11/dist-packages/BCBio/GFF/GFFParser.py to GFFParser.cpython-311.pyc byte-compiling /build/python-bcbio-gff-0.6.9/debian/python3-bcbio-gff/usr/lib/python3.11/dist-packages/BCBio/GFF/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-bcbio-gff-0.6.9/debian/python3-bcbio-gff/usr/lib/python3.11/dist-packages/BCBio/GFF/_utils.py to _utils.cpython-311.pyc byte-compiling /build/python-bcbio-gff-0.6.9/debian/python3-bcbio-gff/usr/lib/python3.11/dist-packages/BCBio/__init__.py to __init__.cpython-311.pyc running install_egg_info running egg_info writing bcbio_gff.egg-info/PKG-INFO writing dependency_links to bcbio_gff.egg-info/dependency_links.txt writing requirements to bcbio_gff.egg-info/requires.txt writing top-level names to bcbio_gff.egg-info/top_level.txt reading manifest file 'bcbio_gff.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'bcbio_gff.egg-info/SOURCES.txt' Copying bcbio_gff.egg-info to /build/python-bcbio-gff-0.6.9/debian/python3-bcbio-gff/usr/lib/python3.11/dist-packages/bcbio_gff-0.6.9.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/build/python-bcbio-gff-0.6.9' dh_install find debian -name __pycache__ -type d | xargs rm -rf make[1]: Leaving directory '/build/python-bcbio-gff-0.6.9' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-bcbio-gff' in '../python3-bcbio-gff_0.6.9-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-bcbio-gff_0.6.9-1_arm64.buildinfo dpkg-genchanges --build=binary -O../python-bcbio-gff_0.6.9-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/12921 and its subdirectories I: Current time: Mon Jun 3 19:13:12 -12 2024 I: pbuilder-time-stamp: 1717485192 Wed May 3 00:50:15 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink10-arm64.debian.net. Wed May 3 00:50:15 UTC 2023 I: Preparing to do remote build '2' on codethink10-arm64.debian.net. Wed May 3 00:53:49 UTC 2023 I: Deleting $TMPDIR on codethink10-arm64.debian.net. Wed May 3 00:53:50 UTC 2023 I: python-bcbio-gff_0.6.9-1_arm64.changes: Format: 1.8 Date: Sun, 16 Jan 2022 16:29:42 +0100 Source: python-bcbio-gff Binary: python3-bcbio-gff Architecture: all Version: 0.6.9-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: python3-bcbio-gff - Python3 library to read and write Generic Feature Format Changes: python-bcbio-gff (0.6.9-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: 612447fa79b7e21d8382581cf7e90153f25cd471 6698 python-bcbio-gff_0.6.9-1_arm64.buildinfo d704ece9e511cbd16acc4a6e52891dbca549b0d0 33412 python3-bcbio-gff_0.6.9-1_all.deb Checksums-Sha256: 22c749631629a0386583da6ef700d9f7a2bc57459618da7e845c3ec486c03b24 6698 python-bcbio-gff_0.6.9-1_arm64.buildinfo cbf15b0b96e20f5fcae358f914b9839cad968ad7510004e645a1e50a54a5d9b0 33412 python3-bcbio-gff_0.6.9-1_all.deb Files: b87ebdf144a6722502848fd1d5f25b1d 6698 science optional python-bcbio-gff_0.6.9-1_arm64.buildinfo 6f8e1e22d5cb082f955b00e9a7bd6395 33412 python optional python3-bcbio-gff_0.6.9-1_all.deb Wed May 3 00:53:51 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.zjgXJ8Ut/python-bcbio-gff_0.6.9-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.zjgXJ8Ut/python-bcbio-gff_0.6.9-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.zjgXJ8Ut/python-bcbio-gff_0.6.9-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.zjgXJ8Ut/b1/python-bcbio-gff_0.6.9-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.zjgXJ8Ut/b2/python-bcbio-gff_0.6.9-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.314s) 0.314s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.014s) 0.014s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Wed May 3 00:53:52 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Wed May 3 00:53:52 UTC 2023 I: python-bcbio-gff from bookworm built successfully and reproducibly on arm64. Wed May 3 00:53:53 UTC 2023 I: Submitting .buildinfo files to external archives: Wed May 3 00:53:53 UTC 2023 I: Submitting 8.0K b1/python-bcbio-gff_0.6.9-1_arm64.buildinfo.asc Wed May 3 00:53:54 UTC 2023 I: Submitting 8.0K b2/python-bcbio-gff_0.6.9-1_arm64.buildinfo.asc Wed May 3 00:53:54 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed May 3 00:53:54 UTC 2023 I: Done submitting .buildinfo files. Wed May 3 00:53:54 UTC 2023 I: Removing signed python-bcbio-gff_0.6.9-1_arm64.buildinfo.asc files: removed './b1/python-bcbio-gff_0.6.9-1_arm64.buildinfo.asc' removed './b2/python-bcbio-gff_0.6.9-1_arm64.buildinfo.asc'