Thu Apr 27 13:46:35 UTC 2023 I: starting to build pybigwig/bookworm/arm64 on jenkins on '2023-04-27 13:46' Thu Apr 27 13:46:35 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_5/25650/console.log Thu Apr 27 13:46:35 UTC 2023 I: Downloading source for bookworm/pybigwig=0.3.18+dfsg-1 --2023-04-27 13:46:35-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/pybigwig/pybigwig_0.3.18%2bdfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2168 (2.1K) [text/prs.lines.tag] Saving to: ‘pybigwig_0.3.18+dfsg-1.dsc’ 0K .. 100% 139M=0s 2023-04-27 13:46:35 (139 MB/s) - ‘pybigwig_0.3.18+dfsg-1.dsc’ saved [2168/2168] Thu Apr 27 13:46:35 UTC 2023 I: pybigwig_0.3.18+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pybigwig Binary: python3-pybigwig Architecture: any Version: 0.3.18+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Diane Trout Homepage: https://github.com/dpryan79/pyBigWig Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/pybigwig Vcs-Git: https://salsa.debian.org/med-team/pybigwig.git Testsuite: autopkgtest Testsuite-Triggers: python3-all Build-Depends: debhelper-compat (= 13), dh-python, libcurl4-gnutls-dev, zlib1g-dev, libbigwig-dev, python3-all, python3-all-dev, python3-numpy, python3-setuptools Package-List: python3-pybigwig deb science optional arch=any Checksums-Sha1: 220a90bf958267a1f996b68e89a90c469c25be78 30947 pybigwig_0.3.18+dfsg.orig.tar.gz de10301503ed14b7c11e9f987722c1ae61f91f3a 4228 pybigwig_0.3.18+dfsg-1.debian.tar.xz Checksums-Sha256: 9e8e590787de8a08e4b02ab7fb1c1d5d9dd3dc45b2c917263f560cd7b0896fde 30947 pybigwig_0.3.18+dfsg.orig.tar.gz 5255afd56b746f2b91ed8a3173511f5e943a8126d22cd1dcf1cd3a6e5e31d54e 4228 pybigwig_0.3.18+dfsg-1.debian.tar.xz Files: da8e02551a79ac8c2a707cc14f8ba246 30947 pybigwig_0.3.18+dfsg.orig.tar.gz 7d6b5363e1ea463d63f181fdcc014f43 4228 pybigwig_0.3.18+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmIOazYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFPcQ//abcKOnTHZxbNjCpTix30Q0ETORBxKEJT zy9mxwZi6QOFM/ywU5yqePGpQduALhUk/cb0FgW+Oqa3xXQykJ1WMVVQjjjybPOw z0xbq782kEvSler3Zb4I8grmuTKvYI1O5AdlTRQU8IU6uncHuK0fTM8sKOFLrp+0 uUJwZBOiit4g/om3vhTyKjUdpCwf7p2LArVbpJr4iT6jcW44rUYVn84gzkgfNRiJ qqnVnJBoery1G/IL/NLE1wCSTmCfejOoGfxiw6EqMB0Z1rYcKmVnDxJq8EpG/BD8 dZzu+IjZkj1dIdICxciMf11myTP/v+gETVKMkEYgaFrLLJigvQJPO01UGFy47CBZ bBRoMBukcKHEjffi6hgB76c3tqdbF4D3IGtaCHzaVHI4Oio8MalpYMBu3JeaAWW9 K9VBV+KCbdTmr4sBI1WzVZIvU4Bz3zu89tJ0mtq/dUKG8TZXe+wBMynfzkR54UTF F2qZ0maMYWXCCU11GW7LmVxK9ryLeD+g3hf/JKmy/u5sDRdw09mbZ/XozukQEOhE G6kixNP+ixjtR6xWNkxf34DibzlzpLxVmODySHyF22NLwGcRa+rO7K8Zentkyh6P AunnfIjQ6eZ9v1nQoqxwTAIl5AcukVbJkgfSGhkVYMdP9rC0cYD7LqI4F1/pRC+x 4fmIaC69Veg= =0Suv -----END PGP SIGNATURE----- Thu Apr 27 13:46:35 UTC 2023 I: Checking whether the package is not for us Thu Apr 27 13:46:36 UTC 2023 I: Starting 1st build on remote node codethink10-arm64.debian.net. Thu Apr 27 13:46:36 UTC 2023 I: Preparing to do remote build '1' on codethink10-arm64.debian.net. Thu Apr 27 13:48:22 UTC 2023 I: Deleting $TMPDIR on codethink10-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Apr 27 01:46:42 -12 2023 I: pbuilder-time-stamp: 1682603202 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pybigwig_0.3.18+dfsg-1.dsc] I: copying [./pybigwig_0.3.18+dfsg.orig.tar.gz] I: copying [./pybigwig_0.3.18+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Feb 17 03:35:18 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pybigwig_0.3.18+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting pybigwig in pybigwig-0.3.18+dfsg dpkg-source: info: unpacking pybigwig_0.3.18+dfsg.orig.tar.gz dpkg-source: info: unpacking pybigwig_0.3.18+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying prepareForExternalLibBigWig.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/25643/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='25643' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.VvU1rKbE/pbuilderrc_XJHr --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.VvU1rKbE/b1 --logfile b1/build.log pybigwig_0.3.18+dfsg-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink10-arm64 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 25 22:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/25643/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, libcurl4-gnutls-dev, zlib1g-dev, libbigwig-dev, python3-all, python3-all-dev, python3-numpy, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libcurl4-gnutls-dev; however: Package libcurl4-gnutls-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbigwig-dev; however: Package libbigwig-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbigwig-dev{a} libbigwig0{a} libblas3{a} libbrotli1{a} libcurl3-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 75 newly installed, 0 to remove and 0 not upgraded. Need to get 42.0 MB of archives. After unpacking 180 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-minimal arm64 3.11.2-6 [806 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 python3.11-minimal arm64 3.11.2-6 [1858 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 python3-minimal arm64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-stdlib arm64 3.11.2-6 [1747 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 python3.11 arm64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 libpython3-stdlib arm64 3.11.2-1+b1 [9296 B] Get: 11 http://deb.debian.org/debian bookworm/main arm64 python3 arm64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 32 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 34 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 37 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 python3-distutils all 3.11.2-2 [131 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 dh-python all 5.20230130 [104 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-10 [20.8 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 libsasl2-2 arm64 2.1.28+dfsg-10 [58.0 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 libldap-2.5-0 arm64 2.5.13+dfsg-5 [171 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 libnghttp2-14 arm64 1.52.0-1 [67.9 kB] Get: 50 http://deb.debian.org/debian bookworm/main arm64 libpsl5 arm64 0.21.2-1 [58.6 kB] Get: 51 http://deb.debian.org/debian bookworm/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 52 http://deb.debian.org/debian bookworm/main arm64 libssh2-1 arm64 1.10.0-3+b1 [172 kB] Get: 53 http://deb.debian.org/debian bookworm/main arm64 libcurl3-gnutls arm64 7.88.1-9 [357 kB] Get: 54 http://deb.debian.org/debian bookworm/main arm64 libbigwig0 arm64 0.4.7+dfsg-3 [26.0 kB] Get: 55 http://deb.debian.org/debian bookworm/main arm64 libbigwig-dev arm64 0.4.7+dfsg-3 [36.4 kB] Get: 56 http://deb.debian.org/debian bookworm/main arm64 libblas3 arm64 3.11.0-2 [91.4 kB] Get: 57 http://deb.debian.org/debian bookworm/main arm64 libcurl4-gnutls-dev arm64 7.88.1-9 [466 kB] Get: 58 http://deb.debian.org/debian bookworm/main arm64 libexpat1-dev arm64 2.5.0-1 [135 kB] Get: 59 http://deb.debian.org/debian bookworm/main arm64 libgfortran5 arm64 12.2.0-14 [340 kB] Get: 60 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 61 http://deb.debian.org/debian bookworm/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 62 http://deb.debian.org/debian bookworm/main arm64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 63 http://deb.debian.org/debian bookworm/main arm64 liblapack3 arm64 3.11.0-2 [1664 kB] Get: 64 http://deb.debian.org/debian bookworm/main arm64 libpython3.11 arm64 3.11.2-6 [1841 kB] Get: 65 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] Get: 66 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-dev arm64 3.11.2-6 [4395 kB] Get: 67 http://deb.debian.org/debian bookworm/main arm64 libpython3-dev arm64 3.11.2-1+b1 [9564 B] Get: 68 http://deb.debian.org/debian bookworm/main arm64 libpython3-all-dev arm64 3.11.2-1+b1 [1068 B] Get: 69 http://deb.debian.org/debian bookworm/main arm64 python3-all arm64 3.11.2-1+b1 [1064 B] Get: 70 http://deb.debian.org/debian bookworm/main arm64 python3.11-dev arm64 3.11.2-6 [617 kB] Get: 71 http://deb.debian.org/debian bookworm/main arm64 python3-dev arm64 3.11.2-1+b1 [26.2 kB] Get: 72 http://deb.debian.org/debian bookworm/main arm64 python3-all-dev arm64 3.11.2-1+b1 [1076 B] Get: 73 http://deb.debian.org/debian bookworm/main arm64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 74 http://deb.debian.org/debian bookworm/main arm64 python3-numpy arm64 1:1.24.2-1 [4751 kB] Get: 75 http://deb.debian.org/debian bookworm/main arm64 python3-setuptools all 66.1.1-1 [521 kB] Fetched 42.0 MB in 1s (39.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.2-6) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.5.0-1_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/pybigwig-0.3.18+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pybigwig_0.3.18+dfsg-1_source.changes dpkg-buildpackage: info: source package pybigwig dpkg-buildpackage: info: source version 0.3.18+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from pybigwig-0.3.18+dfsg/debian/source/options: --extend-diff-ignore=^(.*\.egg-info/) debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py clean /build/pybigwig-0.3.18+dfsg/setup.py:8: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.misc_util import get_info /usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'classifier' warnings.warn(msg) running clean removing '/build/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config /build/pybigwig-0.3.18+dfsg/setup.py:8: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.misc_util import get_info /usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'classifier' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build /build/pybigwig-0.3.18+dfsg/setup.py:8: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.misc_util import get_info /usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'classifier' warnings.warn(msg) running build running build_py creating /build/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWigTest copying pyBigWigTest/test.py -> /build/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWigTest copying pyBigWigTest/__init__.py -> /build/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWigTest running egg_info creating pyBigWig.egg-info writing pyBigWig.egg-info/PKG-INFO writing dependency_links to pyBigWig.egg-info/dependency_links.txt writing requirements to pyBigWig.egg-info/requires.txt writing top-level names to pyBigWig.egg-info/top_level.txt writing manifest file 'pyBigWig.egg-info/SOURCES.txt' reading manifest file 'pyBigWig.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'libBigWig/*' adding license file 'LICENSE.txt' writing manifest file 'pyBigWig.egg-info/SOURCES.txt' copying pyBigWigTest/test.bigBed -> /build/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWigTest copying pyBigWigTest/test.bw -> /build/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWigTest running build_ext building 'pyBigWig' extension Warning: Can't read registry to find the necessary compiler setting Make sure that Python modules winreg, win32api or win32con are installed. INFO: C compiler: aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/pybigwig-0.3.18+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating build creating build/temp.linux-arm64-cpython-311 INFO: compile options: '-DWITHNUMPY -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -IlibBigWig -I/usr/include/python3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c' INFO: aarch64-linux-gnu-gcc: pyBigWig.c pyBigWig.c: In function 'PyString_AsString': pyBigWig.c:773:12: warning: return discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 773 | return PyUnicode_AsUTF8(obj); | ^~~~~~~~~~~~~~~~~~~~~ pyBigWig.c: In function 'pyBwAddHeader': pyBigWig.c:897:32: warning: passing argument 1 of 'bwCreateChromList' from incompatible pointer type [-Wincompatible-pointer-types] 897 | bw->cl = bwCreateChromList(chroms, lengths, n); | ^~~~~~ | | | char ** In file included from pyBigWig.h:3, from pyBigWig.c:3: /usr/include/bigWig.h:497:51: note: expected 'const char * const*' but argument is of type 'char **' 497 | chromList_t *bwCreateChromList(const char* const* chroms, const uint32_t *lengths, int64_t n); | ~~~~~~~~~~~~~~~~~~~^~~~~~ pyBigWig.c: In function 'PyAddIntervals': pyBigWig.c:1251:29: warning: passing argument 2 of 'bwAddIntervals' from incompatible pointer type [-Wincompatible-pointer-types] 1251 | rv = bwAddIntervals(bw, cchroms, ustarts, uends, fvalues, n); | ^~~~~~~ | | | char ** /usr/include/bigWig.h:524:57: note: expected 'const char * const*' but argument is of type 'char **' 524 | int bwAddIntervals(bigWigFile_t *fp, const char* const* chrom, const uint32_t *start, const uint32_t *end, const float *values, uint32_t n); | ~~~~~~~~~~~~~~~~~~~^~~~~ INFO: aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pybigwig-0.3.18+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-cpython-311/pyBigWig.o -L/usr/lib/python3/dist-packages/numpy/core/lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/python3.11/config-3.11-aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lBigWig -lm -lz -lpython3.11 -lcurl -lnpymath -lm -o /build/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWig.cpython-311-aarch64-linux-gnu.so dh_auto_test -O--buildsystem=pybuild I: pybuild base:240: cd /build/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build; python3.11 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/pybigwig-0.3.18+dfsg' dh_auto_install I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/pybigwig-0.3.18+dfsg/debian/python3-pybigwig /build/pybigwig-0.3.18+dfsg/setup.py:8: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.misc_util import get_info /usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'classifier' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing pyBigWig.egg-info/PKG-INFO writing dependency_links to pyBigWig.egg-info/dependency_links.txt writing requirements to pyBigWig.egg-info/requires.txt writing top-level names to pyBigWig.egg-info/top_level.txt reading manifest file 'pyBigWig.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'libBigWig/*' adding license file 'LICENSE.txt' writing manifest file 'pyBigWig.egg-info/SOURCES.txt' running build_ext running install_lib creating /build/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr creating /build/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib creating /build/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11 creating /build/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages copying /build/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWig.cpython-311-aarch64-linux-gnu.so -> /build/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages creating /build/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages/pyBigWigTest creating /build/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages/pyBigWigTest/__pycache__ copying /build/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWigTest/__pycache__/test.cpython-311.pyc -> /build/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages/pyBigWigTest/__pycache__ copying /build/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWigTest/__pycache__/__init__.cpython-311.pyc -> /build/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages/pyBigWigTest/__pycache__ copying /build/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWigTest/test.bw -> /build/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages/pyBigWigTest copying /build/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWigTest/test.bigBed -> /build/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages/pyBigWigTest copying /build/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWigTest/__init__.py -> /build/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages/pyBigWigTest copying /build/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWigTest/test.py -> /build/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages/pyBigWigTest byte-compiling /build/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages/pyBigWigTest/__init__.py to __init__.cpython-311.pyc byte-compiling /build/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages/pyBigWigTest/test.py to test.cpython-311.pyc running install_egg_info Copying pyBigWig.egg-info to /build/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages/pyBigWig-0.3.18.egg-info Skipping SOURCES.txt running install_scripts dh_numpy3 make[1]: Leaving directory '/build/pybigwig-0.3.18+dfsg' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:487: Skipping section [numpy input], unable to parse header dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pybigwig' in '../python3-pybigwig_0.3.18+dfsg-1_arm64.deb'. dpkg-deb: building package 'python3-pybigwig-dbgsym' in '../python3-pybigwig-dbgsym_0.3.18+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../pybigwig_0.3.18+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../pybigwig_0.3.18+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from pybigwig-0.3.18+dfsg/debian/source/options: --extend-diff-ignore=^(.*\.egg-info/) dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/25643 and its subdirectories I: Current time: Thu Apr 27 01:48:21 -12 2023 I: pbuilder-time-stamp: 1682603301 Thu Apr 27 13:48:23 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink9-arm64.debian.net. Thu Apr 27 13:48:23 UTC 2023 I: Preparing to do remote build '2' on codethink9-arm64.debian.net. Thu Apr 27 13:50:04 UTC 2023 I: Deleting $TMPDIR on codethink9-arm64.debian.net. Thu Apr 27 13:50:05 UTC 2023 I: pybigwig_0.3.18+dfsg-1_arm64.changes: Format: 1.8 Date: Thu, 17 Feb 2022 16:32:40 +0100 Source: pybigwig Binary: python3-pybigwig python3-pybigwig-dbgsym Architecture: arm64 Version: 0.3.18+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python3-pybigwig - Python 3 module for quick access to bigBed and bigWig files Changes: pybigwig (0.3.18+dfsg-1) unstable; urgency=medium . * Team upload. * d/watch: drop uupdate * Standards-Version: 4.6.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. Checksums-Sha1: e9ff737a766379fa0366ee64ee1a626648f33dcb 6895 pybigwig_0.3.18+dfsg-1_arm64.buildinfo 62f224ec673f7c91d54ed5bfb06248810509e693 52416 python3-pybigwig-dbgsym_0.3.18+dfsg-1_arm64.deb c13d04d38ce6c54626237bee9295498a90c149fb 39120 python3-pybigwig_0.3.18+dfsg-1_arm64.deb Checksums-Sha256: 53c4f47d010344f239ed1db9a65f3afe9d55e9ae239ec3243ef0ef06d8e9244b 6895 pybigwig_0.3.18+dfsg-1_arm64.buildinfo b34118ea2b45d7996656242f7a320cbbf93792e8bf537b33196316efd2db02f6 52416 python3-pybigwig-dbgsym_0.3.18+dfsg-1_arm64.deb 6ba64c95ee2eae912d3508303c2dbc584e97086a55cba4a3a3fb61e6ab8bb6c0 39120 python3-pybigwig_0.3.18+dfsg-1_arm64.deb Files: 4425910b1e39143f0960e3d6b2a4ec0d 6895 science optional pybigwig_0.3.18+dfsg-1_arm64.buildinfo 38de13e9cff054ceb2a3e625d5f30202 52416 debug optional python3-pybigwig-dbgsym_0.3.18+dfsg-1_arm64.deb 568d3394161846762b74cfda466ba110 39120 science optional python3-pybigwig_0.3.18+dfsg-1_arm64.deb Thu Apr 27 13:50:07 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.VvU1rKbE/pybigwig_0.3.18+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.VvU1rKbE/pybigwig_0.3.18+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.VvU1rKbE/pybigwig_0.3.18+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.VvU1rKbE/b1/pybigwig_0.3.18+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.VvU1rKbE/b2/pybigwig_0.3.18+dfsg-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 1.240s) 1.240s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.029s) 0.029s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Thu Apr 27 13:50:14 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Thu Apr 27 13:50:14 UTC 2023 I: pybigwig from bookworm built successfully and reproducibly on arm64. Thu Apr 27 13:50:18 UTC 2023 I: Submitting .buildinfo files to external archives: Thu Apr 27 13:50:18 UTC 2023 I: Submitting 8.0K b1/pybigwig_0.3.18+dfsg-1_arm64.buildinfo.asc Thu Apr 27 13:50:20 UTC 2023 I: Submitting 8.0K b2/pybigwig_0.3.18+dfsg-1_arm64.buildinfo.asc Thu Apr 27 13:50:21 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Apr 27 13:50:21 UTC 2023 I: Done submitting .buildinfo files. Thu Apr 27 13:50:21 UTC 2023 I: Removing signed pybigwig_0.3.18+dfsg-1_arm64.buildinfo.asc files: removed './b1/pybigwig_0.3.18+dfsg-1_arm64.buildinfo.asc' removed './b2/pybigwig_0.3.18+dfsg-1_arm64.buildinfo.asc'