Tue May 9 00:31:13 UTC 2023 I: starting to build pullseq/bookworm/arm64 on jenkins on '2023-05-09 00:30' Tue May 9 00:31:13 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_12/7948/console.log Tue May 9 00:31:13 UTC 2023 I: Downloading source for bookworm/pullseq=1.0.2-4 --2023-05-09 00:31:13-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/pullseq/pullseq_1.0.2-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1982 (1.9K) [text/prs.lines.tag] Saving to: ‘pullseq_1.0.2-4.dsc’ 0K . 100% 142M=0s 2023-05-09 00:31:13 (142 MB/s) - ‘pullseq_1.0.2-4.dsc’ saved [1982/1982] Tue May 9 00:31:13 UTC 2023 I: pullseq_1.0.2-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pullseq Binary: pullseq Architecture: any Version: 1.0.2-4 Maintainer: Debian Med Packaging Team Uploaders: Nilesh Patra Homepage: https://github.com/bcthomas/pullseq Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/pullseq Vcs-Git: https://salsa.debian.org/med-team/pullseq.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libpcre2-dev, zlib1g-dev Package-List: pullseq deb science optional arch=any Checksums-Sha1: fcfc4b994c29cb5b504c8e7503eba12d569d454e 1408480 pullseq_1.0.2.orig.tar.gz 2cec81e66ac8eb638951fa3d007e634524ef5dba 8676 pullseq_1.0.2-4.debian.tar.xz Checksums-Sha256: a295d7e0e2d64ed05d293d795d1716376707e465f2c42ede6454f27db586c85f 1408480 pullseq_1.0.2.orig.tar.gz 74bfb759338c72315bae894f1c23638bfa6623eab557fadc7b042bdb510d5e7f 8676 pullseq_1.0.2-4.debian.tar.xz Files: a4ef6e5b4b5c77be2ef5d444c44fb6c0 1408480 pullseq_1.0.2.orig.tar.gz dd93e2917f5f078ee81a9d87ee5be273 8676 pullseq_1.0.2-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEE5Qr9Va3SequXFjqLIdIFiZdLPpYFAmQ+K7MUHHRtYW5jaWxs QGRlYmlhbi5vcmcACgkQIdIFiZdLPpbSnQ/+Iuo84r2Q5IhAdQzqNTXTnkSnSm7L 9iBUtewzWUbuYyZd7fciASGgxPJAiUefUd0OAMxQLQzhOjrN3DirvulzV1O6Uvo9 R8P+94Qg1B/zbDMcM0yk9AEal9EeEwUaUXvwemPR7N/2zsHcQDjSQiZybEcuuNpy cBbU1QK9kR0jSL1JSW/yvr/oVDtEBnsONLp7d0arvQgqhIqOZJbYRlrj10zAWVfC IcGaxav6jdkLGYJ28QVG7WkQlE8mBNtkHlOA7/rIbmM8jlTIV2efztF5BG74d4Qq DUjROj6hqZvJSWiProXRQNz4r+W7xzNgS3lLcCJJ/KDgo4uehuSmqqUhRNkqoQFE LgPJVVPYtrj7u9ohUiXVWsNHlmjanEH7VYpyxBs9TWXTj966uoH5MPKeUrxtsXrD jf9K56E7busLLESztEZinPUCWsGVsaVl/AUrKEHqhhjHyQ48MtOuIYCRYFbPmgec QCnlNRs2vIS0fosrQF+KFByW3HrCkJZ3+1hIWLqNSrPDQKe9mHFAT/L/JtY6qJL4 9wxWPxs9CTvr3SW0q9KjVTUmQq3YFH+ns9K9qikXBfHkCop3I4h5jJv72lR+Enla 1evgj1pdvCh05d8IPvipqA6XGnoeDUwVYkksaUmEMguwvAw5IvdEjw+vZPlTKsdI N9oOznLsmDt6/TQ= =vT32 -----END PGP SIGNATURE----- Tue May 9 00:31:13 UTC 2023 I: Checking whether the package is not for us Tue May 9 00:31:13 UTC 2023 I: Starting 1st build on remote node codethink11-arm64.debian.net. Tue May 9 00:31:13 UTC 2023 I: Preparing to do remote build '1' on codethink11-arm64.debian.net. Tue May 9 00:32:33 UTC 2023 I: Deleting $TMPDIR on codethink11-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jun 9 18:54:15 -12 2024 I: pbuilder-time-stamp: 1718002455 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pullseq_1.0.2-4.dsc] I: copying [./pullseq_1.0.2.orig.tar.gz] I: copying [./pullseq_1.0.2-4.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Apr 17 17:33:39 2023 -12 gpgv: using RSA key E50AFD55ADD27AAB97163A8B21D20589974B3E96 gpgv: issuer "tmancill@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pullseq_1.0.2-4.dsc: no acceptable signature found dpkg-source: info: extracting pullseq in pullseq-1.0.2 dpkg-source: info: unpacking pullseq_1.0.2.orig.tar.gz dpkg-source: info: unpacking pullseq_1.0.2-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying pcre2.patch dpkg-source: info: applying getc.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/7956/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='7956' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RpS6zrJE/pbuilderrc_NzIZ --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RpS6zrJE/b1 --logfile b1/build.log pullseq_1.0.2-4.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink11-arm64 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 8 04:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/7956/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libpcre2-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libpcre2-dev; however: Package libpcre2-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 20.4 MB of archives. After unpacking 79.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 libpcre2-16-0 arm64 10.42-1 [216 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 libpcre2-32-0 arm64 10.42-1 [207 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 libpcre2-posix3 arm64 10.42-1 [55.5 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 libpcre2-dev arm64 10.42-1 [664 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] Fetched 20.4 MB in 4s (5217 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../02-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../22-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../24-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.2_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-12_arm64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package libpcre2-16-0:arm64. Preparing to unpack .../30-libpcre2-16-0_10.42-1_arm64.deb ... Unpacking libpcre2-16-0:arm64 (10.42-1) ... Selecting previously unselected package libpcre2-32-0:arm64. Preparing to unpack .../31-libpcre2-32-0_10.42-1_arm64.deb ... Unpacking libpcre2-32-0:arm64 (10.42-1) ... Selecting previously unselected package libpcre2-posix3:arm64. Preparing to unpack .../32-libpcre2-posix3_10.42-1_arm64.deb ... Unpacking libpcre2-posix3:arm64 (10.42-1) ... Selecting previously unselected package libpcre2-dev:arm64. Preparing to unpack .../33-libpcre2-dev_10.42-1_arm64.deb ... Unpacking libpcre2-dev:arm64 (10.42-1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../34-zlib1g-dev_1%3a1.2.13.dfsg-1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.2.13.dfsg-1) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libicu72:arm64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libpcre2-16-0:arm64 (10.42-1) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:arm64 (10.42-1) ... Setting up autopoint (0.21-12) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:arm64 (1:1.2.13.dfsg-1) ... Setting up libpcre2-posix3:arm64 (10.42-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libpcre2-dev:arm64 (10.42-1) ... Setting up libtool (2.4.7-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/pullseq-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pullseq_1.0.2-4_source.changes dpkg-buildpackage: info: source package pullseq dpkg-buildpackage: info: source version 1.0.2-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by tony mancill dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:12: installing './compile' configure.ac:48: installing './config.guess' configure.ac:48: installing './config.sub' configure.ac:7: installing './install-sh' configure.ac:7: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for gzopen in -lz... yes checking for pcre2_config_8 in -lpcre2-8... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for pcre2.h... no checking for inttypes.h... (cached) yes checking for limits.h... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for inline... inline checking for size_t... yes checking for ssize_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint8_t... yes checking for ptrdiff_t... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for strlen... yes checking for memset... yes checking for strchr... yes checking for strerror... yes checking for strtol... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/config.h config.status: executing depfiles commands dh_auto_build make -j8 make[1]: Entering directory '/build/pullseq-1.0.2' Making all in src make[2]: Entering directory '/build/pullseq-1.0.2/src' make all-am make[3]: Entering directory '/build/pullseq-1.0.2/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pullseq-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -fcommon -c -o hash.o hash.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pullseq-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -fcommon -c -o output.o output.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pullseq-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -fcommon -c -o size_filter.o size_filter.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pullseq-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -fcommon -c -o search_header.o search_header.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pullseq-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -fcommon -c -o file_read.o file_read.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pullseq-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -fcommon -c -o pull_by_re.o pull_by_re.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pullseq-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -fcommon -c -o pull_by_name.o pull_by_name.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pullseq-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -fcommon -c -o pull_by_size.o pull_by_size.c pull_by_re.c: In function ‘pull_by_re’: pull_by_re.c:76:29: warning: implicit declaration of function ‘search_header’ [-Wimplicit-function-declaration] 76 | if (search_header(re, seq->name.s) || search_header(re, seq->comment.s)) | ^~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pullseq-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -fcommon -c -o pullseq.o pullseq.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pullseq-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -fcommon -c -o cmpseq.o cmpseq.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pullseq-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -fcommon -c -o seqdiff.o seqdiff.c pullseq.c: In function ‘main’: pullseq.c:275:25: warning: implicit declaration of function ‘pull_by_re’; did you mean ‘pull_by_size’? [-Wimplicit-function-declaration] 275 | count = pull_by_re(in, aStrRegex, min, max, length, exclude, convert, just_count); | ^~~~~~~~~~ | pull_by_size gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/pullseq-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -fcommon -c -o seqdiff_results.o seqdiff_results.c gcc -g -O2 -ffile-prefix-map=/build/pullseq-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -fcommon -Wl,-z,relro -Wl,-z,now -lpcre2-8 -o pullseq hash.o output.o size_filter.o search_header.o file_read.o pull_by_re.o pull_by_name.o pull_by_size.o pullseq.o -lpcre2-8 -lz gcc -g -O2 -ffile-prefix-map=/build/pullseq-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -fcommon -Wl,-z,relro -Wl,-z,now -lpcre2-8 -o seqdiff cmpseq.o file_read.o hash.o seqdiff.o seqdiff_results.o output.o -lpcre2-8 -lz make[3]: Leaving directory '/build/pullseq-1.0.2/src' make[2]: Leaving directory '/build/pullseq-1.0.2/src' make[2]: Entering directory '/build/pullseq-1.0.2' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/build/pullseq-1.0.2' make[1]: Leaving directory '/build/pullseq-1.0.2' dh_auto_test make -j8 check "TESTSUITEFLAGS=-j8 --verbose" VERBOSE=1 make[1]: Entering directory '/build/pullseq-1.0.2' Making check in src make[2]: Entering directory '/build/pullseq-1.0.2/src' make[2]: Leaving directory '/build/pullseq-1.0.2/src' make[2]: Entering directory '/build/pullseq-1.0.2' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/build/pullseq-1.0.2' make[1]: Leaving directory '/build/pullseq-1.0.2' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/pullseq/ make -j8 install DESTDIR=/build/pullseq-1.0.2/debian/pullseq AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/pullseq-1.0.2' Making install in src make[2]: Entering directory '/build/pullseq-1.0.2/src' make[3]: Entering directory '/build/pullseq-1.0.2/src' /usr/bin/mkdir -p '/build/pullseq-1.0.2/debian/pullseq/usr/bin' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/install -c pullseq seqdiff '/build/pullseq-1.0.2/debian/pullseq/usr/bin' make[3]: Leaving directory '/build/pullseq-1.0.2/src' make[2]: Leaving directory '/build/pullseq-1.0.2/src' make[2]: Entering directory '/build/pullseq-1.0.2' make[3]: Entering directory '/build/pullseq-1.0.2' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/pullseq-1.0.2' make[2]: Leaving directory '/build/pullseq-1.0.2' make[1]: Leaving directory '/build/pullseq-1.0.2' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'pullseq-dbgsym' in '../pullseq-dbgsym_1.0.2-4_arm64.deb'. dpkg-deb: building package 'pullseq' in '../pullseq_1.0.2-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../pullseq_1.0.2-4_arm64.buildinfo dpkg-genchanges --build=binary -O../pullseq_1.0.2-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/7956 and its subdirectories I: Current time: Sun Jun 9 18:55:31 -12 2024 I: pbuilder-time-stamp: 1718002531 Tue May 9 00:32:34 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink16-arm64.debian.net. Tue May 9 00:32:34 UTC 2023 I: Preparing to do remote build '2' on codethink16-arm64.debian.net. Tue May 9 00:33:25 UTC 2023 I: Deleting $TMPDIR on codethink16-arm64.debian.net. Tue May 9 00:33:26 UTC 2023 I: pullseq_1.0.2-4_arm64.changes: Format: 1.8 Date: Mon, 17 Apr 2023 22:24:11 -0700 Source: pullseq Binary: pullseq pullseq-dbgsym Architecture: arm64 Version: 1.0.2-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: tony mancill Description: pullseq - Extract sequence from a fasta or fastq Closes: 1034552 Changes: pullseq (1.0.2-4) unstable; urgency=medium . * Team upload. * Add patch to fix hang on arm64 (Closes: #1034552) Checksums-Sha1: 49b69be76a38099ab0c9d5f1b0752a824497f7a8 51784 pullseq-dbgsym_1.0.2-4_arm64.deb 5feb88a61f8ae832c62f1459fd4016a974fa7e18 5258 pullseq_1.0.2-4_arm64.buildinfo 3c2ca3e740bc82931d0fbe210f63db7ac492e26c 20224 pullseq_1.0.2-4_arm64.deb Checksums-Sha256: 0a1f7f40255014de23c8873aaf7270bec1d2f3a8260c305cecbdae1db12b40ab 51784 pullseq-dbgsym_1.0.2-4_arm64.deb 797a626b6df2214ebb948ec83ae2c66ab0e743e05adb9b3563b57b6056174594 5258 pullseq_1.0.2-4_arm64.buildinfo 430213732a371f2e0f1221d0235ceea0636ebfdc873ffcb3f74b74c2114fa6db 20224 pullseq_1.0.2-4_arm64.deb Files: 9bbe704b38cef5301ab9c4a61b8bd7a3 51784 debug optional pullseq-dbgsym_1.0.2-4_arm64.deb a596b8076b36795300a6cd984964ae39 5258 science optional pullseq_1.0.2-4_arm64.buildinfo d166a3a19bff7962fe67d1a8913e82cc 20224 science optional pullseq_1.0.2-4_arm64.deb Tue May 9 00:33:27 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.RpS6zrJE/pullseq_1.0.2-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.RpS6zrJE/pullseq_1.0.2-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.RpS6zrJE/pullseq_1.0.2-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.RpS6zrJE/b1/pullseq_1.0.2-4_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.RpS6zrJE/b2/pullseq_1.0.2-4_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.314s) 0.314s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.016s) 0.016s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Tue May 9 00:33:28 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Tue May 9 00:33:28 UTC 2023 I: pullseq from bookworm built successfully and reproducibly on arm64. Tue May 9 00:33:29 UTC 2023 I: Submitting .buildinfo files to external archives: Tue May 9 00:33:29 UTC 2023 I: Submitting 8.0K b1/pullseq_1.0.2-4_arm64.buildinfo.asc Tue May 9 00:33:31 UTC 2023 I: Submitting 8.0K b2/pullseq_1.0.2-4_arm64.buildinfo.asc Tue May 9 00:33:31 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue May 9 00:33:31 UTC 2023 I: Done submitting .buildinfo files. Tue May 9 00:33:31 UTC 2023 I: Removing signed pullseq_1.0.2-4_arm64.buildinfo.asc files: removed './b1/pullseq_1.0.2-4_arm64.buildinfo.asc' removed './b2/pullseq_1.0.2-4_arm64.buildinfo.asc'