Mon Apr 17 18:29:02 UTC 2023 I: starting to build pizzly/bookworm/arm64 on jenkins on '2023-04-17 18:28' Mon Apr 17 18:29:02 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_17/25795/console.log Mon Apr 17 18:29:02 UTC 2023 I: Downloading source for bookworm/pizzly=0.37.3+ds-9 --2023-04-17 18:29:02-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/pizzly/pizzly_0.37.3%2bds-9.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2023 (2.0K) [text/prs.lines.tag] Saving to: ‘pizzly_0.37.3+ds-9.dsc’ 0K . 100% 135M=0s 2023-04-17 18:29:02 (135 MB/s) - ‘pizzly_0.37.3+ds-9.dsc’ saved [2023/2023] Mon Apr 17 18:29:02 UTC 2023 I: pizzly_0.37.3+ds-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pizzly Binary: pizzly Architecture: any Version: 0.37.3+ds-9 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/pmelsted/pizzly Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/pizzly Vcs-Git: https://salsa.debian.org/med-team/pizzly.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libseqan2-dev, help2man, cmake, kallisto, zlib1g-dev Package-List: pizzly deb science optional arch=any Checksums-Sha1: 3c134c7e66314d7c3fdb99d6f9aaa4347d12e713 262304 pizzly_0.37.3+ds.orig.tar.xz c0a79cea3c490eccfefb82c35a90de28a72a6c25 5308 pizzly_0.37.3+ds-9.debian.tar.xz Checksums-Sha256: 8dd0dfb08a9341d4eeb525679779d3afb641b198c88df646ffc7e72930039678 262304 pizzly_0.37.3+ds.orig.tar.xz 7dbcaf4d228a00de23bcd05ea43b829bb4736a3c87e83a346b766a14d7dd4141 5308 pizzly_0.37.3+ds-9.debian.tar.xz Files: cba5c09c8f5493378b068821029df3a5 262304 pizzly_0.37.3+ds.orig.tar.xz fdcd50bccd08aad5072daaa28b32a9d8 5308 pizzly_0.37.3+ds-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPSO9oRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFvqA/+MbaQm/vE2hajyraE2L0yrACvQubO82da UhNjI1Gd7Fv7vAo+luy+woCIiejZ4jSIf5abfEM1zIBjIqVUgXUH6XYumtWNLc3s feXtrLXDWP1Auv5OTY1VffqBjThfPV55JSMGc02/1/zVZ8jyZLlPWe2gnZGcZMl2 meTc+XTyuo3ekanyrVJCcGN6Vm2ppJ8nWiJFP9NVdnPfD8xK8eNYcbcOg4FKY7Ud 9jRrTxVFwo1JNEP4z2r7iIp52KMpw09DgNYkgagOMs7CPIzBssy1NF3UwLp8Qd7L cz/s6AZz0x1Ia75iitFPsN6WvodAL4/9C1du5rVrzDbSpziVYoDRm9ATy8IeD9B4 zn6bENzwZ+Mdg2eHrFnuwNaVD3tqMbMeaq8hTR32O/xGb9E+rHmD/kwbiOoqP/Kh obSf1Qd40MERzrHlbYqoIspZxDQkEpyGiBqIqXLTVGoeqBnYdw2uWCAPYm5HoEIz 2RyOsREB+bWW/gQPP7WgRtHQogMjJB0Uar5oELlNV9Iwnpi7jv5/lrqx6YC/gm+t k6ZSSLSyKBYTBDtQoDjt9VNLlZH+QC74ie2wtE6R1gDh6HuaZ5LMjS6FyQwR/X4K 7N35RxXXUAlF45AqAM3f8sfk/Xr21jY2LZCxRmC20uDdsV9Qmx29PHKVI6yIPVmu /x3bFXpik7Q= =aRRI -----END PGP SIGNATURE----- Mon Apr 17 18:29:02 UTC 2023 I: Checking whether the package is not for us Mon Apr 17 18:29:02 UTC 2023 I: Starting 1st build on remote node codethink13-arm64.debian.net. Mon Apr 17 18:29:02 UTC 2023 I: Preparing to do remote build '1' on codethink13-arm64.debian.net. Mon Apr 17 18:33:22 UTC 2023 I: Deleting $TMPDIR on codethink13-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun May 19 12:52:09 -12 2024 I: pbuilder-time-stamp: 1716166329 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pizzly_0.37.3+ds-9.dsc] I: copying [./pizzly_0.37.3+ds.orig.tar.xz] I: copying [./pizzly_0.37.3+ds-9.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Jan 25 20:37:46 2023 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pizzly_0.37.3+ds-9.dsc: no acceptable signature found dpkg-source: info: extracting pizzly in pizzly-0.37.3+ds dpkg-source: info: unpacking pizzly_0.37.3+ds.orig.tar.xz dpkg-source: info: unpacking pizzly_0.37.3+ds-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying executable-not-elf-or-script.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/8705/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='8705' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QHbcKDsN/pbuilderrc_MSeY --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QHbcKDsN/b1 --logfile b1/build.log pizzly_0.37.3+ds-9.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink13-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 19 04:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/8705/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libseqan2-dev, help2man, cmake, kallisto, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev; however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on kallisto; however: Package kallisto is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} kallisto{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libcurl3-gnutls{a} libcurl4{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libhts3{a} libhtscodecs2{a} libicu72{a} libjsoncpp25{a} libldap-2.5-0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 57 newly installed, 0 to remove and 0 not upgraded. Need to get 33.4 MB of archives. After unpacking 138 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 liblocale-gettext-perl arm64 1.07-5 [15.1 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libproc2-0 arm64 2:4.0.2-3 [60.1 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 procps arm64 2:4.0.2-3 [698 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.1+b3 [619 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libarchive13 arm64 3.6.2-1 [316 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-10 [20.8 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 libsasl2-2 arm64 2.1.28+dfsg-10 [58.0 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 libldap-2.5-0 arm64 2.5.13+dfsg-5 [171 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 libnghttp2-14 arm64 1.52.0-1 [67.9 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 libpsl5 arm64 0.21.2-1 [58.6 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 libssh2-1 arm64 1.10.0-3+b1 [172 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 libcurl4 arm64 7.88.1-8 [361 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 libjsoncpp25 arm64 1.9.5-4 [72.3 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 librhash0 arm64 1.4.3-3 [131 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 libuv1 arm64 1.44.2-1 [133 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 cmake-data all 3.25.1-1 [2026 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 cmake arm64 3.25.1-1 [6806 kB] Get: 37 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 42 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 44 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 50 http://deb.debian.org/debian bookworm/main arm64 help2man arm64 1.49.3 [198 kB] Get: 51 http://deb.debian.org/debian bookworm/main arm64 libcurl3-gnutls arm64 7.88.1-8 [357 kB] Get: 52 http://deb.debian.org/debian bookworm/main arm64 libdeflate0 arm64 1.14-1 [54.3 kB] Get: 53 http://deb.debian.org/debian bookworm/main arm64 libhtscodecs2 arm64 1.3.0-4 [70.5 kB] Get: 54 http://deb.debian.org/debian bookworm/main arm64 libhts3 arm64 1.16+ds-3 [392 kB] Get: 55 http://deb.debian.org/debian bookworm/main arm64 kallisto arm64 0.48.0+dfsg-3 [242 kB] Get: 56 http://deb.debian.org/debian bookworm/main arm64 libseqan2-dev all 2.4.0+dfsg-15 [1215 kB] Get: 57 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] Fetched 33.4 MB in 3s (10.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-5_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../01-libproc2-0_2%3a4.0.2-3_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.2-3_arm64.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../05-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../08-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../11-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../18-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../19-libxml2_2.9.14+dfsg-1.1+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.1+b3) ... Selecting previously unselected package libarchive13:arm64. Preparing to unpack .../20-libarchive13_3.6.2-1_arm64.deb ... Unpacking libarchive13:arm64 (3.6.2-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../21-libbrotli1_1.0.9-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b6) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../22-libsasl2-modules-db_2.1.28+dfsg-10_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../23-libsasl2-2_2.1.28+dfsg-10_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:arm64. Preparing to unpack .../24-libldap-2.5-0_2.5.13+dfsg-5_arm64.deb ... Unpacking libldap-2.5-0:arm64 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../25-libnghttp2-14_1.52.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.52.0-1) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../26-libpsl5_0.21.2-1_arm64.deb ... Unpacking libpsl5:arm64 (0.21.2-1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/pizzly-0.37.3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pizzly_0.37.3+ds-9_source.changes dpkg-buildpackage: info: source package pizzly dpkg-buildpackage: info: source version 0.37.3+ds-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/pizzly-0.37.3+ds' dh_auto_clean rm -f debian/pizzly.1 make[1]: Leaving directory '/build/pizzly-0.37.3+ds' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/pizzly.substvars debian/files rm -fr -- debian/pizzly/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. -- The CXX compiler identification is GNU 12.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.2.13") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/pizzly-0.37.3+ds/obj-aarch64-linux-gnu dh_auto_build cd obj-aarch64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/pizzly-0.37.3+ds -B/build/pizzly-0.37.3+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/pizzly-0.37.3+ds/obj-aarch64-linux-gnu/CMakeFiles /build/pizzly-0.37.3+ds/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' make -f CMakeFiles/pizzly.dir/build.make CMakeFiles/pizzly.dir/depend make[3]: Entering directory '/build/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' cd /build/pizzly-0.37.3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pizzly-0.37.3+ds /build/pizzly-0.37.3+ds /build/pizzly-0.37.3+ds/obj-aarch64-linux-gnu /build/pizzly-0.37.3+ds/obj-aarch64-linux-gnu /build/pizzly-0.37.3+ds/obj-aarch64-linux-gnu/CMakeFiles/pizzly.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' make -f CMakeFiles/pizzly.dir/build.make CMakeFiles/pizzly.dir/build make[3]: Entering directory '/build/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' [ 50%] Building CXX object CMakeFiles/pizzly.dir/main.cpp.o /usr/bin/c++ -I/build/pizzly-0.37.3+ds/. -g -O2 -ffile-prefix-map=/build/pizzly-0.37.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -DSEQAN_HAS_ZLIB=1 -MD -MT CMakeFiles/pizzly.dir/main.cpp.o -MF CMakeFiles/pizzly.dir/main.cpp.o.d -o CMakeFiles/pizzly.dir/main.cpp.o -c /build/pizzly-0.37.3+ds/main.cpp In file included from /build/pizzly-0.37.3+ds/main.cpp:6: /build/pizzly-0.37.3+ds/common.h: In constructor 'ProgramOptions::ProgramOptions()': /build/pizzly-0.37.3+ds/common.h:18:7: warning: 'ProgramOptions::kmerScore' will be initialized after [-Wreorder] 18 | int kmerScore; | ^~~~~~~~~ /build/pizzly-0.37.3+ds/common.h:17:7: warning: 'int ProgramOptions::insertSize' [-Wreorder] 17 | int insertSize; | ^~~~~~~~~~ /build/pizzly-0.37.3+ds/common.h:19:3: warning: when initialized here [-Wreorder] 19 | ProgramOptions() : kmerScore(2), insertSize(400), ignoreProtein(false) {} | ^~~~~~~~~~~~~~ /build/pizzly-0.37.3+ds/common.h:17:7: warning: 'ProgramOptions::insertSize' will be initialized after [-Wreorder] 17 | int insertSize; | ^~~~~~~~~~ /build/pizzly-0.37.3+ds/common.h:14:8: warning: 'bool ProgramOptions::ignoreProtein' [-Wreorder] 14 | bool ignoreProtein; | ^~~~~~~~~~~~~ /build/pizzly-0.37.3+ds/common.h:19:3: warning: when initialized here [-Wreorder] 19 | ProgramOptions() : kmerScore(2), insertSize(400), ignoreProtein(false) {} | ^~~~~~~~~~~~~~ In file included from /build/pizzly-0.37.3+ds/main.cpp:8: /build/pizzly-0.37.3+ds/GeneModel.hpp: In member function 'bool Transcriptome::translateTrPosition(const std::string&, int, std::string&, int&, std::string&)': /build/pizzly-0.37.3+ds/GeneModel.hpp:117:10: warning: unused variable 'fw' [-Wunused-variable] 117 | bool fw = (trxmodel.strand == Strandedness::FORWARD); | ^~ /build/pizzly-0.37.3+ds/GeneModel.hpp: In function 'void writeTranscriptome(Transcriptome&, std::ostream&)': /build/pizzly-0.37.3+ds/GeneModel.hpp:146:17: warning: unused variable 'gene_id' [-Wunused-variable] 146 | const auto &gene_id = gene.first; | ^~~~~~~ /build/pizzly-0.37.3+ds/GeneModel.hpp:172:19: warning: unused variable 'tr_id' [-Wunused-variable] 172 | const auto &tr_id = trlist.first; | ^~~~~ /build/pizzly-0.37.3+ds/GeneModel.hpp: In function 'void parseGTF(Transcriptome&, const std::string&, const ProgramOptions&)': /build/pizzly-0.37.3+ds/GeneModel.hpp:282:25: warning: comparison of integer expressions of different signedness: 'int' and 'seqan::Size > >::Type' {aka 'long unsigned int'} [-Wsign-compare] 282 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/pizzly-0.37.3+ds/GeneModel.hpp:329:25: warning: comparison of integer expressions of different signedness: 'int' and 'seqan::Size > >::Type' {aka 'long unsigned int'} [-Wsign-compare] 329 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/pizzly-0.37.3+ds/GeneModel.hpp:392:25: warning: comparison of integer expressions of different signedness: 'int' and 'seqan::Size > >::Type' {aka 'long unsigned int'} [-Wsign-compare] 392 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/pizzly-0.37.3+ds/main.cpp:9: /build/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/pizzly-0.37.3+ds/FilterFusions.hpp:205:27: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 205 | return std::move(m); | ~~~~~~~~~^~~ /build/pizzly-0.37.3+ds/FilterFusions.hpp:205:27: note: remove 'std::move' call /build/pizzly-0.37.3+ds/FilterFusions.hpp:214:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 214 | return std::move(m); | ~~~~~~~~~^~~ /build/pizzly-0.37.3+ds/FilterFusions.hpp:214:21: note: remove 'std::move' call /build/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/pizzly-0.37.3+ds/FilterFusions.hpp:251:9: warning: unused variable 'matchlen' [-Wunused-variable] 251 | int matchlen = seqan::length(krseq); | ^~~~~~~~ /build/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/pizzly-0.37.3+ds/FilterFusions.hpp:311:19: warning: comparison of integer expressions of different signedness: 'int' and 'seqan::Size > >::Type' {aka 'long unsigned int'} [-Wsign-compare] 311 | if (tr_stop > seqan::length(trseq)) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/pizzly-0.37.3+ds/FilterFusions.hpp:323:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 323 | return std::move(tlist); | ~~~~~~~~~^~~~~~~ /build/pizzly-0.37.3+ds/FilterFusions.hpp:323:21: note: remove 'std::move' call /build/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/pizzly-0.37.3+ds/FilterFusions.hpp:709:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 709 | for (int i = 0; i < trm.exons.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/pizzly-0.37.3+ds/FilterFusions.hpp:738:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 738 | for (int i = 0; i < trm.exons.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/pizzly-0.37.3+ds/FilterFusions.hpp:765:11: warning: unused variable 'gap' [-Wunused-variable] 765 | int gap = d2 - d1; | ^~~ /build/pizzly-0.37.3+ds/FilterFusions.hpp:781:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 781 | return std::move(ret); | ~~~~~~~~~^~~~~ /build/pizzly-0.37.3+ds/FilterFusions.hpp:781:21: note: remove 'std::move' call /build/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/pizzly-0.37.3+ds/FilterFusions.hpp:883:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 883 | for (int i = 0; i < v.size(); i++) { | ~~^~~~~~~~~~ /build/pizzly-0.37.3+ds/FilterFusions.hpp:929:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 929 | for (int i = 0; i < readsInTr.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/pizzly-0.37.3+ds/FilterFusions.hpp:867:17: warning: unused variable 'split_reads' [-Wunused-variable] 867 | int split_reads = spp.second; | ^~~~~~~~~~~ /build/pizzly-0.37.3+ds/FilterFusions.hpp:1033:29: warning: loop variable 'p' creates a copy from type 'const std::pair > >' [-Wrange-loop-construct] 1033 | for (const auto p : trfmap) { | ^ /build/pizzly-0.37.3+ds/FilterFusions.hpp:1033:29: note: use reference type to prevent copying 1033 | for (const auto p : trfmap) { | ^ | & /build/pizzly-0.37.3+ds/FilterFusions.hpp:1091:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1091 | for (int i = 0; i < readsInTr.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/pizzly-0.37.3+ds/FilterFusions.hpp:1115:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1115 | for (int i = 0; i < v.size(); i++) { | ~~^~~~~~~~~~ /build/pizzly-0.37.3+ds/FilterFusions.hpp:1112:18: warning: unused variable 'firstJsonRead' [-Wunused-variable] 1112 | bool firstJsonRead = true; | ^~~~~~~~~~~~~ /build/pizzly-0.37.3+ds/main.cpp: In function 'int main(int, const char**)': /build/pizzly-0.37.3+ds/main.cpp:126:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::unordered_map, seqan::String > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 126 | } else if (numTxpSeqFound != trx.seqs.size()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/pizzly-0.37.3+ds/GeneModel.hpp: In function 'Strandedness operator~(const Strandedness&)': /build/pizzly-0.37.3+ds/GeneModel.hpp:18:1: warning: control reaches end of non-void function [-Wreturn-type] 18 | } | ^ In file included from /usr/include/seqan/stream.h:119, from /usr/include/seqan/arg_parse.h:46, from /build/pizzly-0.37.3+ds/main.cpp:2: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = std::__cxx11::basic_string]', inlined from 'seqan::String seqan::_getNumbersFromString(const std::string&)' at /usr/include/seqan/arg_parse/arg_parse_version_check.h:356:46: /usr/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h: In function 'seqan::String seqan::_getNumbersFromString(const std::string&)': /usr/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = std::__cxx11::basic_string]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]' at /usr/include/seqan/gff_io/gff_io_base.h:379:44: /usr/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]': /usr/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]' at /usr/include/seqan/gff_io/gff_io_base.h:386:42: /usr/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]': /usr/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/pizzly-0.37.3+ds/FilterFusions.hpp: In member function 'auto filterFusionRecord(const Transcriptome&, ProgramOptions&, const FusionRecord&, SplitRecord&)::&, const std::vector&, std::vector >&, int&)>::operator().constprop(const std::string&, const std::vector&, const std::vector&, std::vector >&, int&) const': /build/pizzly-0.37.3+ds/FilterFusions.hpp:435:15: warning: 'splitStrand' may be used uninitialized [-Wmaybe-uninitialized] 435 | if (forwardRead) { | ^~ /build/pizzly-0.37.3+ds/FilterFusions.hpp:389:22: note: 'splitStrand' was declared here 389 | Strandedness splitStrand, safeStrand; | ^~~~~~~~~~~ /build/pizzly-0.37.3+ds/FilterFusions.hpp: In function 'bool filterFusionRecord(const Transcriptome&, ProgramOptions&, const FusionRecord&, SplitRecord&)': /build/pizzly-0.37.3+ds/FilterFusions.hpp:603:25: warning: 'st2' may be used uninitialized [-Wmaybe-uninitialized] 603 | splitrec.dir2 = st2 == Strandedness::FORWARD; // check read 2 | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/pizzly-0.37.3+ds/FilterFusions.hpp:554:22: note: 'st2' was declared here 554 | Strandedness st1,st2; | ^~~ /build/pizzly-0.37.3+ds/FilterFusions.hpp:602:25: warning: 'st1' may be used uninitialized [-Wmaybe-uninitialized] 602 | splitrec.dir1 = st1 == Strandedness::FORWARD; // check read 1 | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/pizzly-0.37.3+ds/FilterFusions.hpp:554:18: note: 'st1' was declared here 554 | Strandedness st1,st2; | ^~~ [100%] Linking CXX executable pizzly /usr/bin/cmake -E cmake_link_script CMakeFiles/pizzly.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/pizzly-0.37.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -DSEQAN_HAS_ZLIB=1 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/pizzly.dir/main.cpp.o -o pizzly -lpthread -lz make[3]: Leaving directory '/build/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' [100%] Built target pizzly make[2]: Leaving directory '/build/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/pizzly-0.37.3+ds/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' dh_auto_test rm -fr -- /tmp/dh-xdg-rundir-sKus35l9 create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/pizzly.substvars rm -fr -- debian/.debhelper/generated/pizzly/ debian/pizzly/ debian/tmp/ dh_auto_install --destdir=debian/pizzly/ install -m0755 -d /build/pizzly-0.37.3\+ds/debian/pizzly debian/rules override_dh_install make[1]: Entering directory '/build/pizzly-0.37.3+ds' help2man -N -n pizzly -s 1 obj-*/pizzly > debian/pizzly.1 dh_install install -m0755 -d debian/pizzly/usr/bin cp --reflink=auto -a ./obj-aarch64-linux-gnu/pizzly ./scripts/flatten_json.py ./scripts/get_fragment_length.py debian/pizzly/usr/bin/ make[1]: Leaving directory '/build/pizzly-0.37.3+ds' dh_installdocs install -m0755 -d debian/pizzly/usr/share/doc/pizzly install -m0755 -d debian/pizzly/usr/share/doc/pizzly cp --reflink=auto -a ./README.md debian/pizzly/usr/share/doc/pizzly cp --reflink=auto -a ./debian/README.Debian debian/pizzly/usr/share/doc/pizzly chmod -R u\+rw,go=rX debian/pizzly/usr/share/doc install -p -m0644 debian/README.Debian debian/pizzly/usr/share/doc/pizzly/README.Debian install -p -m0644 debian/copyright debian/pizzly/usr/share/doc/pizzly/copyright dh_installchangelogs install -m0755 -d debian/pizzly/usr/share/doc/pizzly install -p -m0644 debian/.debhelper/generated/pizzly/dh_installchangelogs.dch.trimmed debian/pizzly/usr/share/doc/pizzly/changelog.Debian dh_installman install -m0755 -d debian/pizzly/usr/share/man/man1/ install -p -m0644 ./debian/pizzly.1 debian/pizzly/usr/share/man/man1/pizzly.1 man-recode --to-code UTF-8 --suffix .dh-new debian/pizzly/usr/share/man/man1/pizzly.1 mv debian/pizzly/usr/share/man/man1/pizzly.1.dh-new debian/pizzly/usr/share/man/man1/pizzly.1 chmod 0644 -- debian/pizzly/usr/share/man/man1/pizzly.1 dh_lintian install -m0755 -d debian/pizzly/usr/share/lintian/overrides install -p -m0644 debian/lintian-overrides debian/pizzly/usr/share/lintian/overrides/pizzly dh_perl dh_link install -m0755 -d debian/pizzly/usr/bin rm -f debian/pizzly/usr/bin/pizzly_flatten_json.py ln -s flatten_json.py debian/pizzly/usr/bin/pizzly_flatten_json.py dh_strip_nondeterminism dh_compress cd debian/pizzly chmod a-x usr/share/doc/pizzly/changelog.Debian usr/share/man/man1/pizzly.1 gzip -9nf usr/share/doc/pizzly/changelog.Debian usr/share/man/man1/pizzly.1 cd '/build/pizzly-0.37.3+ds' dh_fixperms find debian/pizzly ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/pizzly/usr/share/doc -type f -a -true -a ! -regex 'debian/pizzly/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/pizzly/usr/share/man debian/pizzly/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_dwz -a dwz -- debian/pizzly/usr/bin/pizzly dh_strip -a install -m0755 -d debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/8d objcopy --only-keep-debug --compress-debug-sections debian/pizzly/usr/bin/pizzly debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/8d/04346c0b62bb166c636cb2978975bf90b69bc0.debug chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/8d/04346c0b62bb166c636cb2978975bf90b69bc0.debug strip --remove-section=.comment --remove-section=.note debian/pizzly/usr/bin/pizzly objcopy --add-gnu-debuglink debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/8d/04346c0b62bb166c636cb2978975bf90b69bc0.debug debian/pizzly/usr/bin/pizzly install -m0755 -d debian/.debhelper/pizzly/dbgsym-root/usr/share/doc ln -s pizzly debian/.debhelper/pizzly/dbgsym-root/usr/share/doc/pizzly-dbgsym install -m0755 -d debian/.debhelper/pizzly dh_makeshlibs -a rm -f debian/pizzly/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/pizzly/DEBIAN dpkg-shlibdeps -Tdebian/pizzly.substvars debian/pizzly/usr/bin/pizzly dh_installdeb install -m0755 -d debian/pizzly/DEBIAN dh_gencontrol install -m0755 -d debian/pizzly/DEBIAN echo misc:Depends= >> debian/pizzly.substvars echo misc:Pre-Depends= >> debian/pizzly.substvars install -m0755 -d debian/.debhelper/pizzly/dbgsym-root/DEBIAN dpkg-gencontrol -ppizzly -ldebian/changelog -Tdebian/pizzly.substvars -Pdebian/.debhelper/pizzly/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=pizzly-dbgsym "-DDepends=pizzly (= \${binary:Version})" "-DDescription=debug symbols for pizzly" -DBuild-Ids=8d04346c0b62bb166c636cb2978975bf90b69bc0 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppizzly -ldebian/changelog -Tdebian/pizzly.substvars -Pdebian/pizzly chmod 0644 -- debian/pizzly/DEBIAN/control dh_md5sums install -m0755 -d debian/pizzly/DEBIAN cd debian/pizzly >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/pizzly/DEBIAN/md5sums install -m0755 -d debian/.debhelper/pizzly/dbgsym-root/DEBIAN cd debian/.debhelper/pizzly/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/pizzly .. dpkg-deb --root-owner-group --build debian/.debhelper/pizzly/dbgsym-root .. dpkg-deb: building package 'pizzly' in '../pizzly_0.37.3+ds-9_arm64.deb'. dpkg-deb: building package 'pizzly-dbgsym' in '../pizzly-dbgsym_0.37.3+ds-9_arm64.deb'. dpkg-genbuildinfo --build=binary -O../pizzly_0.37.3+ds-9_arm64.buildinfo dpkg-genchanges --build=binary -O../pizzly_0.37.3+ds-9_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/8705 and its subdirectories I: Current time: Sun May 19 12:56:20 -12 2024 I: pbuilder-time-stamp: 1716166580 Mon Apr 17 18:33:23 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink10-arm64.debian.net. Mon Apr 17 18:33:23 UTC 2023 I: Preparing to do remote build '2' on codethink10-arm64.debian.net. Mon Apr 17 18:36:34 UTC 2023 I: Deleting $TMPDIR on codethink10-arm64.debian.net. Mon Apr 17 18:36:35 UTC 2023 I: pizzly_0.37.3+ds-9_arm64.changes: Format: 1.8 Date: Tue, 06 Dec 2022 20:00:06 +0100 Source: pizzly Binary: pizzly pizzly-dbgsym Architecture: arm64 Version: 0.37.3+ds-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: pizzly - Identifies gene fusions in RNA sequencing data Changes: pizzly (0.37.3+ds-9) unstable; urgency=medium . * Team upload. * Really fix watch file Checksums-Sha1: 978f2d0c182ebe22950976f486eed7d419c34f48 3631832 pizzly-dbgsym_0.37.3+ds-9_arm64.deb 31aca29b9666a8bf4267b290d840afac7f1de746 6118 pizzly_0.37.3+ds-9_arm64.buildinfo 77590b59541943b0aee7f256e207db3c4039c21f 254908 pizzly_0.37.3+ds-9_arm64.deb Checksums-Sha256: 502b499c78449a4c326c0392bf48074a7ff89c9b1206134c15a454c62d08437f 3631832 pizzly-dbgsym_0.37.3+ds-9_arm64.deb 910ca03cf7a70e34b46f59c12f0e7777770c3688125facc19f5738a605c83746 6118 pizzly_0.37.3+ds-9_arm64.buildinfo e0c03e23eec979d80117a255b0947d088bab1732a5f894237fbdfa6466cf3171 254908 pizzly_0.37.3+ds-9_arm64.deb Files: 70f589ff743e7de64bec213e8b3ab375 3631832 debug optional pizzly-dbgsym_0.37.3+ds-9_arm64.deb ff538b6d7c8aac4347d4d7038715b53a 6118 science optional pizzly_0.37.3+ds-9_arm64.buildinfo f80ab94d0d384ccde8ae4dc440bebbbb 254908 science optional pizzly_0.37.3+ds-9_arm64.deb Mon Apr 17 18:36:36 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.QHbcKDsN/pizzly_0.37.3+ds-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.QHbcKDsN/pizzly_0.37.3+ds-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.QHbcKDsN/pizzly_0.37.3+ds-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.QHbcKDsN/b1/pizzly_0.37.3+ds-9_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.QHbcKDsN/b2/pizzly_0.37.3+ds-9_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.398s) 0.398s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.060s) 0.060s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Mon Apr 17 18:36:38 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Mon Apr 17 18:36:38 UTC 2023 I: pizzly from bookworm built successfully and reproducibly on arm64. Mon Apr 17 18:36:40 UTC 2023 I: Submitting .buildinfo files to external archives: Mon Apr 17 18:36:40 UTC 2023 I: Submitting 8.0K b1/pizzly_0.37.3+ds-9_arm64.buildinfo.asc Mon Apr 17 18:36:40 UTC 2023 I: Submitting 8.0K b2/pizzly_0.37.3+ds-9_arm64.buildinfo.asc Mon Apr 17 18:36:41 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Apr 17 18:36:41 UTC 2023 I: Done submitting .buildinfo files. Mon Apr 17 18:36:41 UTC 2023 I: Removing signed pizzly_0.37.3+ds-9_arm64.buildinfo.asc files: removed './b1/pizzly_0.37.3+ds-9_arm64.buildinfo.asc' removed './b2/pizzly_0.37.3+ds-9_arm64.buildinfo.asc'