Mon Jan 8 08:26:23 UTC 2024 I: starting to build mindthegap/bookworm/arm64 on jenkins on '2024-01-08 08:26' Mon Jan 8 08:26:23 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_15/22965/console.log Mon Jan 8 08:26:23 UTC 2024 I: Downloading source for bookworm/mindthegap=2.3.0-2 --2024-01-08 08:26:24-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/mindthegap/mindthegap_2.3.0-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2269 (2.2K) [text/prs.lines.tag] Saving to: ‘mindthegap_2.3.0-2.dsc’ 0K .. 100% 358M=0s 2024-01-08 08:26:24 (358 MB/s) - ‘mindthegap_2.3.0-2.dsc’ saved [2269/2269] Mon Jan 8 08:26:24 UTC 2024 I: mindthegap_2.3.0-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mindthegap Binary: mindthegap, mindthegap-examples Architecture: any-amd64 arm64 mips64el ppc64el ia64 ppc64 riscv64 sparc64 alpha all Version: 2.3.0-2 Maintainer: Debian Med Packaging Team Uploaders: Shayan Doust Homepage: https://github.com/GATB/MindTheGap Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/mindthegap Vcs-Git: https://salsa.debian.org/med-team/mindthegap.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, libgatbcore-dev (>= 1.4.2+dfsg-7), libboost-dev, zlib1g-dev, libhdf5-dev Package-List: mindthegap deb science optional arch=any-amd64,arm64,mips64el,ppc64el,ia64,ppc64,riscv64,sparc64,alpha mindthegap-examples deb science optional arch=all Checksums-Sha1: 2822f481a334d040916ee2b4e875ef83de67e430 777831 mindthegap_2.3.0.orig.tar.gz 3e38113e10438294b14f51883c411ae589b166d0 7548 mindthegap_2.3.0-2.debian.tar.xz Checksums-Sha256: 1d886d34bb892079121755c856329155f332e4bc19eaf31b41ce3d0333544ac5 777831 mindthegap_2.3.0.orig.tar.gz 8d121adedbc745dc3047b68b3e53fbfdfa5085b67287a4461dd2edc26a1b2686 7548 mindthegap_2.3.0-2.debian.tar.xz Files: 7a5d75e60c812e921dd4a60fd71c9b74 777831 mindthegap_2.3.0.orig.tar.gz 0720f9ee50e0dc8e5e4af064550e3fc2 7548 mindthegap_2.3.0-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEI3pUsQKHKL8A7zH00Ot2KGX8XjYFAmPwBfAUHHNlcmdpb2Rq QGRlYmlhbi5vcmcACgkQ0Ot2KGX8XjYbDxAAiBxfUTAhTXwKZ5F6XK+3dgq34VHj B/iKJHoPNHeQG+75kgFLXdKk+3zHDNgcArTtS6xwnxjh5mIJ/VOqRUmitNjHtQPL 0BpJWviW4eamkgW1agP/S+gcQNOynGNj/Rez/hh3XGBzajBVcjqI8GVfmsFs9YYj 2NW1h5YNpJrRvBw/xweUYiKIv8EQitrxmFXUS/7tohsFsA5xLAPoRPMh+BHXVUIl ZYB6RroQLzj0tZ8RYt3dkC1K4tJug856bnIUBx0n9v/V9V8y/z/UZebMil3nkjKq joJ1M0E9TYBRgJt8+/IAB2GGl0x4eOOczmfTZ2B1cHNCy7dhw+vVV9cWkaj4ZFvF zN6qONm9mnFU4CD+43sRHNCoWR2ALtnICFmLJyf/qTgMbvAQxm/8TmuWIaqsJcYg 2bc5ppkNmsRk23UN1wCoj+HX2Ih1kg4XUSRHqjKGOSkvA4EqtOTs6m4o4nT6reYu 7ToONt5ta3NNtZSNUQYaXyjEXVkaRwVUXULbkOUFmv0/K9e/yWp9TP9V2YcPoXH1 7YRZw9+NPUG4bZ/R6hHM4/oc2rp4ZimGfXIoxqdQOoS/noeUyiKVwkvQBfGwr1iL yBL8ng5T3xSYg/E2//7bRKFJdT4m6Ymidxw1Oc53BvattlPhWa7oyPXjbKxcikug DHsY7WjEZuuULLI= =joDP -----END PGP SIGNATURE----- Mon Jan 8 08:26:24 UTC 2024 I: Checking whether the package is not for us Mon Jan 8 08:26:24 UTC 2024 I: Starting 1st build on remote node codethink01-arm64.debian.net. Mon Jan 8 08:26:24 UTC 2024 I: Preparing to do remote build '1' on codethink01-arm64.debian.net. Mon Jan 8 08:28:03 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Feb 9 02:49:26 -12 2025 I: pbuilder-time-stamp: 1739112566 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mindthegap_2.3.0-2.dsc] I: copying [./mindthegap_2.3.0.orig.tar.gz] I: copying [./mindthegap_2.3.0-2.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Feb 17 22:55:44 2023 gpgv: using RSA key 237A54B1028728BF00EF31F4D0EB762865FC5E36 gpgv: issuer "sergiodj@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./mindthegap_2.3.0-2.dsc: no acceptable signature found dpkg-source: info: extracting mindthegap in mindthegap-2.3.0 dpkg-source: info: unpacking mindthegap_2.3.0.orig.tar.gz dpkg-source: info: unpacking mindthegap_2.3.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_gatb-core.patch dpkg-source: info: applying remove_unnecessary_installs.patch dpkg-source: info: applying modify_tests_for_autopkgtest.patch dpkg-source: info: applying 2to3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2699321/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='930332eeb7874fa980187e14b0086f61' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2699321' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZNtOiPvy/pbuilderrc_6YUW --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZNtOiPvy/b1 --logfile b1/build.log mindthegap_2.3.0-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.104:3128' I: uname -a Linux codethink01-arm64 6.1.0-17-cloud-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux I: ls -l /bin total 7104 -rwxr-xr-x 1 root root 1346480 Apr 23 2023 bash -rwxr-xr-x 3 root root 67728 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 67728 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 67728 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 67664 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 68536 Sep 20 2022 cat -rwxr-xr-x 1 root root 68616 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 68552 Sep 20 2022 chmod -rwxr-xr-x 1 root root 68632 Sep 20 2022 chown -rwxr-xr-x 1 root root 200264 Sep 20 2022 cp -rwxr-xr-x 1 root root 133640 Jan 5 2023 dash -rwxr-xr-x 1 root root 134144 Sep 20 2022 date -rwxr-xr-x 1 root root 134248 Sep 20 2022 dd -rwxr-xr-x 1 root root 134888 Sep 20 2022 df -rwxr-xr-x 1 root root 200440 Sep 20 2022 dir -rwxr-xr-x 1 root root 141720 Mar 23 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 68408 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 68384 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 134584 Mar 23 2023 findmnt -rwsr-xr-x 1 root root 67744 Mar 23 2023 fusermount -rwxr-xr-x 1 root root 198880 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 93752 Apr 10 2022 gzip -rwxr-xr-x 1 root root 67592 Dec 19 2022 hostname -rwxr-xr-x 1 root root 68664 Sep 20 2022 ln -rwxr-xr-x 1 root root 69208 Mar 23 2023 login -rwxr-xr-x 1 root root 200440 Sep 20 2022 ls -rwxr-xr-x 1 root root 264360 Mar 23 2023 lsblk -rwxr-xr-x 1 root root 134384 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 68768 Sep 20 2022 mknod -rwxr-xr-x 1 root root 68472 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 67752 Mar 23 2023 more -rwsr-xr-x 1 root root 67744 Mar 23 2023 mount -rwxr-xr-x 1 root root 67744 Mar 23 2023 mountpoint -rwxr-xr-x 1 root root 134728 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 68496 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 68456 Sep 20 2022 readlink -rwxr-xr-x 1 root root 68592 Sep 20 2022 rm -rwxr-xr-x 1 root root 68480 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 68392 Jul 28 2023 run-parts -rwxr-xr-x 1 root root 134536 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 68432 Sep 20 2022 sleep -rwxr-xr-x 1 root root 134088 Sep 20 2022 stty -rwsr-xr-x 1 root root 133312 Mar 23 2023 su -rwxr-xr-x 1 root root 68448 Sep 20 2022 sync -rwxr-xr-x 1 root root 539896 Apr 6 2023 tar -rwxr-xr-x 1 root root 67904 Jul 28 2023 tempfile -rwxr-xr-x 1 root root 134160 Sep 20 2022 touch -rwxr-xr-x 1 root root 68384 Sep 20 2022 true -rwxr-xr-x 1 root root 67664 Mar 23 2023 ulockmgr_server -rwsr-xr-x 1 root root 67744 Mar 23 2023 umount -rwxr-xr-x 1 root root 68416 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 200440 Sep 20 2022 vdir -rwxr-xr-x 1 root root 133312 Mar 23 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/2699321/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgatbcore-dev (>= 1.4.2+dfsg-7), libboost-dev, zlib1g-dev, libhdf5-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18171 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgatbcore-dev (>= 1.4.2+dfsg-7); however: Package libgatbcore-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libcurl4{a} libcurl4-openssl-dev{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgatbcore-dev{a} libgatbcore3{a} libgfortran5{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libicu72{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjsoncpp25{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libssl-dev{a} libsub-override-perl{a} libsz2{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 70 newly installed, 0 to remove and 0 not upgraded. Need to get 53.7 MB of archives. After unpacking 391 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 libproc2-0 arm64 2:4.0.2-3 [60.1 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 procps arm64 2:4.0.2-3 [698 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.3~deb12u1 [619 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libarchive13 arm64 3.6.2-1 [316 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-10 [20.8 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libsasl2-2 arm64 2.1.28+dfsg-10 [58.0 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 libldap-2.5-0 arm64 2.5.13+dfsg-5 [171 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 libnghttp2-14 arm64 1.52.0-1+deb12u1 [68.3 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 libpsl5 arm64 0.21.2-1 [58.6 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 libssh2-1 arm64 1.10.0-3+b1 [172 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 libcurl4 arm64 7.88.1-10+deb12u4 [366 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 libjsoncpp25 arm64 1.9.5-4 [72.3 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 librhash0 arm64 1.4.3-3 [131 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 libuv1 arm64 1.44.2-1 [133 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 cmake-data all 3.25.1-1 [2026 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 cmake arm64 3.25.1-1 [6806 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 37 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 41 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 43 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 hdf5-helpers arm64 1.10.8+repack1-1 [27.9 kB] Get: 50 http://deb.debian.org/debian bookworm/main arm64 libaec0 arm64 1.0.6-1+b1 [19.9 kB] Get: 51 http://deb.debian.org/debian bookworm/main arm64 libsz2 arm64 1.0.6-1+b1 [7740 B] Get: 52 http://deb.debian.org/debian bookworm/main arm64 libaec-dev arm64 1.0.6-1+b1 [18.7 kB] Get: 53 http://deb.debian.org/debian bookworm/main arm64 libboost1.74-dev arm64 1.74.0+ds1-21 [9508 kB] Get: 54 http://deb.debian.org/debian bookworm/main arm64 libboost-dev arm64 1.74.0.3 [4548 B] Get: 55 http://deb.debian.org/debian bookworm/main arm64 libcurl4-openssl-dev arm64 7.88.1-10+deb12u4 [475 kB] Get: 56 http://deb.debian.org/debian bookworm/main arm64 libgatbcore3 arm64 1.4.2+dfsg-11 [1560 kB] Get: 57 http://deb.debian.org/debian bookworm/main arm64 libgatbcore-dev arm64 1.4.2+dfsg-11 [4057 kB] Get: 58 http://deb.debian.org/debian bookworm/main arm64 libgfortran5 arm64 12.2.0-14 [340 kB] Get: 59 http://deb.debian.org/debian bookworm/main arm64 libhdf5-103-1 arm64 1.10.8+repack1-1 [1037 kB] Get: 60 http://deb.debian.org/debian bookworm/main arm64 libhdf5-cpp-103-1 arm64 1.10.8+repack1-1 [119 kB] Get: 61 http://deb.debian.org/debian bookworm/main arm64 libhdf5-fortran-102 arm64 1.10.8+repack1-1 [91.1 kB] Get: 62 http://deb.debian.org/debian bookworm/main arm64 libhdf5-hl-100 arm64 1.10.8+repack1-1 [64.0 kB] Get: 63 http://deb.debian.org/debian bookworm/main arm64 libhdf5-hl-fortran-100 arm64 1.10.8+repack1-1 [42.7 kB] Get: 64 http://deb.debian.org/debian bookworm/main arm64 libhdf5-hl-cpp-100 arm64 1.10.8+repack1-1 [25.4 kB] Get: 65 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] Get: 66 http://deb.debian.org/debian bookworm/main arm64 libjpeg62-turbo arm64 1:2.1.5-2 [171 kB] Get: 67 http://deb.debian.org/debian bookworm/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-2 [292 kB] Get: 68 http://deb.debian.org/debian bookworm/main arm64 libjpeg-dev arm64 1:2.1.5-2 [71.8 kB] Get: 69 http://deb.debian.org/debian bookworm/main arm64 libssl-dev arm64 3.0.11-1~deb12u2 [2302 kB] Get: 70 http://deb.debian.org/debian bookworm/main arm64 libhdf5-dev arm64 1.10.8+repack1-1 [2654 kB] Fetched 53.7 MB in 1s (95.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18171 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.2-3_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.2-3_arm64.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../04-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../10-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../17-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../18-libxml2_2.9.14+dfsg-1.3~deb12u1_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3~deb12u1) ... Selecting previously unselected package libarchive13:arm64. Preparing to unpack .../19-libarchive13_3.6.2-1_arm64.deb ... Unpacking libarchive13:arm64 (3.6.2-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../20-libbrotli1_1.0.9-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b6) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../21-libsasl2-modules-db_2.1.28+dfsg-10_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../22-libsasl2-2_2.1.28+dfsg-10_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:arm64. Preparing to unpack .../23-libldap-2.5-0_2.5.13+dfsg-5_arm64.deb ... Unpacking libldap-2.5-0:arm64 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../24-libnghttp2-14_1.52.0-1+deb12u1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.52.0-1+deb12u1) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../25-libpsl5_0.21.2-1_arm64.deb ... Unpacking libpsl5:arm64 (0.21.2-1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../26-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:arm64. Preparing to unpack .../27-libssh2-1_1.10.0-3+b1_arm64.deb ... Unpacking libssh2-1:arm64 (1.10.0-3+b1) ... Selecting previously unselected package libcurl4:arm64. Preparing to unpack .../28-libcurl4_7.88.1-10+deb12u4_arm64.deb ... Unpacking libcurl4:arm64 (7.88.1-10+deb12u4) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../29-libexpat1_2.5.0-1_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-1) ... Selecting previously unselected package libjsoncpp25:arm64. Preparing to unpack .../30-libjsoncpp25_1.9.5-4_arm64.deb ... Unpacking libjsoncpp25:arm64 (1.9.5-4) ... Selecting previously unselected package librhash0:arm64. Preparing to unpack .../31-librhash0_1.4.3-3_arm64.deb ... Unpacking librhash0:arm64 (1.4.3-3) ... Selecting previously unselected package libuv1:arm64. Preparing to unpack .../32-libuv1_1.44.2-1_arm64.deb ... Unpacking libuv1:arm64 (1.44.2-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../33-cmake-data_3.25.1-1_all.deb ... Unpacking cmake-data (3.25.1-1) ... Selecting previously unselected package cmake. Preparing to unpack .../34-cmake_3.25.1-1_arm64.deb ... Unpacking cmake (3.25.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../35-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../36-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../37-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../38-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../39-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../40-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../41-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../42-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../43-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. Preparing to unpack .../44-gettext_0.21-12_arm64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../45-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../46-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../47-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../48-hdf5-helpers_1.10.8+repack1-1_arm64.deb ... Unpacking hdf5-helpers (1.10.8+repack1-1) ... Selecting previously unselected package libaec0:arm64. Preparing to unpack .../49-libaec0_1.0.6-1+b1_arm64.deb ... Unpacking libaec0:arm64 (1.0.6-1+b1) ... Selecting previously unselected package libsz2:arm64. Preparing to unpack .../50-libsz2_1.0.6-1+b1_arm64.deb ... Unpacking libsz2:arm64 (1.0.6-1+b1) ... Selecting previously unselected package libaec-dev:arm64. Preparing to unpack .../51-libaec-dev_1.0.6-1+b1_arm64.deb ... Unpacking libaec-dev:arm64 (1.0.6-1+b1) ... Selecting previously unselected package libboost1.74-dev:arm64. Preparing to unpack .../52-libboost1.74-dev_1.74.0+ds1-21_arm64.deb ... Unpacking libboost1.74-dev:arm64 (1.74.0+ds1-21) ... Selecting previously unselected package libboost-dev:arm64. Preparing to unpack .../53-libboost-dev_1.74.0.3_arm64.deb ... Unpacking libboost-dev:arm64 (1.74.0.3) ... Selecting previously unselected package libcurl4-openssl-dev:arm64. Preparing to unpack .../54-libcurl4-openssl-dev_7.88.1-10+deb12u4_arm64.deb ... Unpacking libcurl4-openssl-dev:arm64 (7.88.1-10+deb12u4) ... Selecting previously unselected package libgatbcore3:arm64. Preparing to unpack .../55-libgatbcore3_1.4.2+dfsg-11_arm64.deb ... Unpacking libgatbcore3:arm64 (1.4.2+dfsg-11) ... Selecting previously unselected package libgatbcore-dev:arm64. Preparing to unpack .../56-libgatbcore-dev_1.4.2+dfsg-11_arm64.deb ... Unpacking libgatbcore-dev:arm64 (1.4.2+dfsg-11) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../57-libgfortran5_12.2.0-14_arm64.deb ... Unpacking libgfortran5:arm64 (12.2.0-14) ... Selecting previously unselected package libhdf5-103-1:arm64. Preparing to unpack .../58-libhdf5-103-1_1.10.8+repack1-1_arm64.deb ... Unpacking libhdf5-103-1:arm64 (1.10.8+repack1-1) ... Selecting previously unselected package libhdf5-cpp-103-1:arm64. Preparing to unpack .../59-libhdf5-cpp-103-1_1.10.8+repack1-1_arm64.deb ... Unpacking libhdf5-cpp-103-1:arm64 (1.10.8+repack1-1) ... Selecting previously unselected package libhdf5-fortran-102:arm64. Preparing to unpack .../60-libhdf5-fortran-102_1.10.8+repack1-1_arm64.deb ... Unpacking libhdf5-fortran-102:arm64 (1.10.8+repack1-1) ... Selecting previously unselected package libhdf5-hl-100:arm64. Preparing to unpack .../61-libhdf5-hl-100_1.10.8+repack1-1_arm64.deb ... Unpacking libhdf5-hl-100:arm64 (1.10.8+repack1-1) ... Selecting previously unselected package libhdf5-hl-fortran-100:arm64. Preparing to unpack .../62-libhdf5-hl-fortran-100_1.10.8+repack1-1_arm64.deb ... Unpacking libhdf5-hl-fortran-100:arm64 (1.10.8+repack1-1) ... Selecting previously unselected package libhdf5-hl-cpp-100:arm64. Preparing to unpack .../63-libhdf5-hl-cpp-100_1.10.8+repack1-1_arm64.deb ... Unpacking libhdf5-hl-cpp-100:arm64 (1.10.8+repack1-1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../64-zlib1g-dev_1%3a1.2.13.dfsg-1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.2.13.dfsg-1) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../65-libjpeg62-turbo_1%3a2.1.5-2_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.1.5-2) ... Selecting previously unselected package libjpeg62-turbo-dev:arm64. Preparing to unpack .../66-libjpeg62-turbo-dev_1%3a2.1.5-2_arm64.deb ... Unpacking libjpeg62-turbo-dev:arm64 (1:2.1.5-2) ... Selecting previously unselected package libjpeg-dev:arm64. Preparing to unpack .../67-libjpeg-dev_1%3a2.1.5-2_arm64.deb ... Unpacking libjpeg-dev:arm64 (1:2.1.5-2) ... Selecting previously unselected package libssl-dev:arm64. Preparing to unpack .../68-libssl-dev_3.0.11-1~deb12u2_arm64.deb ... Unpacking libssl-dev:arm64 (3.0.11-1~deb12u2) ... Selecting previously unselected package libhdf5-dev. Preparing to unpack .../69-libhdf5-dev_1.10.8+repack1-1_arm64.deb ... Unpacking libhdf5-dev (1.10.8+repack1-1) ... Setting up libexpat1:arm64 (2.5.0-1) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libpsl5:arm64 (0.21.2-1) ... Setting up libboost1.74-dev:arm64 (1.74.0+ds1-21) ... Setting up libicu72:arm64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up hdf5-helpers (1.10.8+repack1-1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b6) ... Setting up libnghttp2-14:arm64 (1.52.0-1+deb12u1) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libaec0:arm64 (1.0.6-1+b1) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg-10) ... Setting up autotools-dev (20220109.1) ... Setting up libuv1:arm64 (1.44.2-1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-2) ... Setting up libjpeg62-turbo-dev:arm64 (1:2.1.5-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libproc2-0:arm64 (2:4.0.2-3) ... Setting up libssl-dev:arm64 (3.0.11-1~deb12u2) ... Setting up autopoint (0.21-12) ... Setting up libjsoncpp25:arm64 (1.9.5-4) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg-10) ... Setting up libgfortran5:arm64 (12.2.0-14) ... Setting up libgatbcore3:arm64 (1.4.2+dfsg-11) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:arm64 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up librhash0:arm64 (1.4.3-3) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up procps (2:4.0.2-3) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:arm64 (1.10.0-3+b1) ... Setting up cmake-data (3.25.1-1) ... Setting up libboost-dev:arm64 (1.74.0.3) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3~deb12u1) ... Setting up libsz2:arm64 (1.0.6-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libarchive13:arm64 (3.6.2-1) ... Setting up libaec-dev:arm64 (1.0.6-1+b1) ... Setting up libjpeg-dev:arm64 (1:2.1.5-2) ... Setting up libldap-2.5-0:arm64 (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgatbcore-dev:arm64 (1.4.2+dfsg-11) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libcurl4:arm64 (7.88.1-10+deb12u4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcurl4-openssl-dev:arm64 (7.88.1-10+deb12u4) ... Setting up libhdf5-103-1:arm64 (1.10.8+repack1-1) ... Setting up libhdf5-cpp-103-1:arm64 (1.10.8+repack1-1) ... Setting up cmake (3.25.1-1) ... Setting up libhdf5-hl-100:arm64 (1.10.8+repack1-1) ... Setting up debhelper (13.11.4) ... Setting up libhdf5-hl-cpp-100:arm64 (1.10.8+repack1-1) ... Setting up libhdf5-fortran-102:arm64 (1.10.8+repack1-1) ... Setting up libhdf5-hl-fortran-100:arm64 (1.10.8+repack1-1) ... Setting up libhdf5-dev (1.10.8+repack1-1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Processing triggers for libc-bin (2.36-9+deb12u3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/mindthegap-2.3.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mindthegap_2.3.0-2_source.changes dpkg-buildpackage: info: source package mindthegap dpkg-buildpackage: info: source version 2.3.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sergio Durigan Junior dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Warning (dev) at CMakeLists.txt:142: Syntax Warning in cmake code at column 42 Argument not separated from preceding token by whitespace. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:147: Syntax Warning in cmake code at column 38 Argument not separated from preceding token by whitespace. This warning is for project developers. Use -Wno-dev to suppress it. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- cxx: -g -O2 -ffile-prefix-map=/build/reproducible-path/mindthegap-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu dh_auto_build cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/mindthegap-2.3.0 -B/build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu' make -f CMakeFiles/MindTheGap.dir/build.make CMakeFiles/MindTheGap.dir/depend make[3]: Entering directory '/build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu' make -f CMakeFiles/nwalign.dir/build.make CMakeFiles/nwalign.dir/depend cd /build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mindthegap-2.3.0 /build/reproducible-path/mindthegap-2.3.0 /build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu /build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu /build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu/CMakeFiles/MindTheGap.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu' cd /build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mindthegap-2.3.0 /build/reproducible-path/mindthegap-2.3.0 /build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu /build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu /build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu/CMakeFiles/nwalign.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu' make -f CMakeFiles/MindTheGap.dir/build.make CMakeFiles/MindTheGap.dir/build make[3]: Leaving directory '/build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu' make -f CMakeFiles/nwalign.dir/build.make CMakeFiles/nwalign.dir/build make[3]: Entering directory '/build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu' [ 10%] Building CXX object CMakeFiles/MindTheGap.dir/src/main.cpp.o [ 20%] Building CXX object CMakeFiles/MindTheGap.dir/src/Filler.cpp.o /usr/bin/c++ -I/build/reproducible-path/mindthegap-2.3.0/src -I"/build/reproducible-path/mindthegap-2.3.0/src/*" -g -O2 -ffile-prefix-map=/build/reproducible-path/mindthegap-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/MindTheGap.dir/src/main.cpp.o -MF CMakeFiles/MindTheGap.dir/src/main.cpp.o.d -o CMakeFiles/MindTheGap.dir/src/main.cpp.o -c /build/reproducible-path/mindthegap-2.3.0/src/main.cpp [ 30%] Building CXX object CMakeFiles/nwalign.dir/src/nwAlign/nwalign.cpp.o /usr/bin/c++ -I/build/reproducible-path/mindthegap-2.3.0/src -I"/build/reproducible-path/mindthegap-2.3.0/src/*" -g -O2 -ffile-prefix-map=/build/reproducible-path/mindthegap-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/nwalign.dir/src/nwAlign/nwalign.cpp.o -MF CMakeFiles/nwalign.dir/src/nwAlign/nwalign.cpp.o.d -o CMakeFiles/nwalign.dir/src/nwAlign/nwalign.cpp.o -c /build/reproducible-path/mindthegap-2.3.0/src/nwAlign/nwalign.cpp /usr/bin/c++ -I/build/reproducible-path/mindthegap-2.3.0/src -I"/build/reproducible-path/mindthegap-2.3.0/src/*" -g -O2 -ffile-prefix-map=/build/reproducible-path/mindthegap-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/MindTheGap.dir/src/Filler.cpp.o -MF CMakeFiles/MindTheGap.dir/src/Filler.cpp.o.d -o CMakeFiles/MindTheGap.dir/src/Filler.cpp.o -c /build/reproducible-path/mindthegap-2.3.0/src/Filler.cpp [ 40%] Building CXX object CMakeFiles/MindTheGap.dir/src/Finder.cpp.o [ 50%] Building CXX object CMakeFiles/MindTheGap.dir/src/GraphAnalysis.cpp.o /usr/bin/c++ -I/build/reproducible-path/mindthegap-2.3.0/src -I"/build/reproducible-path/mindthegap-2.3.0/src/*" -g -O2 -ffile-prefix-map=/build/reproducible-path/mindthegap-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/MindTheGap.dir/src/Finder.cpp.o -MF CMakeFiles/MindTheGap.dir/src/Finder.cpp.o.d -o CMakeFiles/MindTheGap.dir/src/Finder.cpp.o -c /build/reproducible-path/mindthegap-2.3.0/src/Finder.cpp /usr/bin/c++ -I/build/reproducible-path/mindthegap-2.3.0/src -I"/build/reproducible-path/mindthegap-2.3.0/src/*" -g -O2 -ffile-prefix-map=/build/reproducible-path/mindthegap-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/MindTheGap.dir/src/GraphAnalysis.cpp.o -MF CMakeFiles/MindTheGap.dir/src/GraphAnalysis.cpp.o.d -o CMakeFiles/MindTheGap.dir/src/GraphAnalysis.cpp.o -c /build/reproducible-path/mindthegap-2.3.0/src/GraphAnalysis.cpp [ 60%] Building CXX object CMakeFiles/MindTheGap.dir/src/GraphOutputDot.cpp.o [ 70%] Building CXX object CMakeFiles/MindTheGap.dir/src/IGraphOutput.cpp.o /usr/bin/c++ -I/build/reproducible-path/mindthegap-2.3.0/src -I"/build/reproducible-path/mindthegap-2.3.0/src/*" -g -O2 -ffile-prefix-map=/build/reproducible-path/mindthegap-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/MindTheGap.dir/src/GraphOutputDot.cpp.o -MF CMakeFiles/MindTheGap.dir/src/GraphOutputDot.cpp.o.d -o CMakeFiles/MindTheGap.dir/src/GraphOutputDot.cpp.o -c /build/reproducible-path/mindthegap-2.3.0/src/GraphOutputDot.cpp /usr/bin/c++ -I/build/reproducible-path/mindthegap-2.3.0/src -I"/build/reproducible-path/mindthegap-2.3.0/src/*" -g -O2 -ffile-prefix-map=/build/reproducible-path/mindthegap-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/MindTheGap.dir/src/IGraphOutput.cpp.o -MF CMakeFiles/MindTheGap.dir/src/IGraphOutput.cpp.o.d -o CMakeFiles/MindTheGap.dir/src/IGraphOutput.cpp.o -c /build/reproducible-path/mindthegap-2.3.0/src/IGraphOutput.cpp [ 80%] Building CXX object CMakeFiles/MindTheGap.dir/src/Utils.cpp.o /usr/bin/c++ -I/build/reproducible-path/mindthegap-2.3.0/src -I"/build/reproducible-path/mindthegap-2.3.0/src/*" -g -O2 -ffile-prefix-map=/build/reproducible-path/mindthegap-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/MindTheGap.dir/src/Utils.cpp.o -MF CMakeFiles/MindTheGap.dir/src/Utils.cpp.o.d -o CMakeFiles/MindTheGap.dir/src/Utils.cpp.o -c /build/reproducible-path/mindthegap-2.3.0/src/Utils.cpp In file included from /build/reproducible-path/mindthegap-2.3.0/src/GraphOutputDot.hpp:24, from /build/reproducible-path/mindthegap-2.3.0/src/Filler.hpp:26, from /build/reproducible-path/mindthegap-2.3.0/src/main.cpp:23: /build/reproducible-path/mindthegap-2.3.0/src/IGraphOutput.hpp:54:61: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | template <> struct hash::Type> : public unary_function::Type, size_t> | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/12/bits/refwrap.h:39, from /usr/include/c++/12/vector:66, from /usr/include/gatb/system/api/types.hpp:44, from /usr/include/gatb/system/api/IMemory.hpp:34, from /usr/include/gatb/system/impl/MemoryCommon.hpp:31, from /usr/include/gatb/system/impl/System.hpp:32, from /usr/include/gatb/gatb_core.hpp:31, from /build/reproducible-path/mindthegap-2.3.0/src/Finder.hpp:25, from /build/reproducible-path/mindthegap-2.3.0/src/main.cpp:22: /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/mindthegap-2.3.0/src/IGraphOutput.hpp:58:61: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 58 | template <> struct hash::Type> : public unary_function::Type, size_t> | ^~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/mindthegap-2.3.0/src/IGraphOutput.hpp:62:61: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 62 | template <> struct hash::Type> : public unary_function::Type, size_t> | ^~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/mindthegap-2.3.0/src/IGraphOutput.hpp:66:61: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 66 | template <> struct hash::Type> : public unary_function::Type, size_t> | ^~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/mindthegap-2.3.0/src/GraphOutputDot.hpp:24, from /build/reproducible-path/mindthegap-2.3.0/src/Filler.hpp:26, from /build/reproducible-path/mindthegap-2.3.0/src/Filler.cpp:21: /build/reproducible-path/mindthegap-2.3.0/src/IGraphOutput.hpp:54:61: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | template <> struct hash::Type> : public unary_function::Type, size_t> | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/12/bits/refwrap.h:39, from /usr/include/c++/12/vector:66, from /usr/include/gatb/system/api/types.hpp:44, from /usr/include/gatb/system/api/IMemory.hpp:34, from /usr/include/gatb/system/impl/MemoryCommon.hpp:31, from /usr/include/gatb/system/impl/System.hpp:32, from /usr/include/gatb/gatb_core.hpp:31, from /build/reproducible-path/mindthegap-2.3.0/src/Filler.hpp:25: /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/mindthegap-2.3.0/src/IGraphOutput.hpp:58:61: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 58 | template <> struct hash::Type> : public unary_function::Type, size_t> | ^~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/mindthegap-2.3.0/src/IGraphOutput.hpp:62:61: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 62 | template <> struct hash::Type> : public unary_function::Type, size_t> | ^~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/mindthegap-2.3.0/src/IGraphOutput.hpp:66:61: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 66 | template <> struct hash::Type> : public unary_function::Type, size_t> | ^~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/mindthegap-2.3.0/src/GraphOutputDot.hpp:24, from /build/reproducible-path/mindthegap-2.3.0/src/Filler.hpp:26, from /build/reproducible-path/mindthegap-2.3.0/src/GraphAnalysis.hpp:32, from /build/reproducible-path/mindthegap-2.3.0/src/GraphAnalysis.cpp:20: /build/reproducible-path/mindthegap-2.3.0/src/IGraphOutput.hpp:54:61: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | template <> struct hash::Type> : public unary_function::Type, size_t> | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /build/reproducible-path/mindthegap-2.3.0/src/GraphAnalysis.hpp:20: /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/mindthegap-2.3.0/src/IGraphOutput.hpp:58:61: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 58 | template <> struct hash::Type> : public unary_function::Type, size_t> | ^~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/mindthegap-2.3.0/src/IGraphOutput.hpp:62:61: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 62 | template <> struct hash::Type> : public unary_function::Type, size_t> | ^~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/mindthegap-2.3.0/src/IGraphOutput.hpp:66:61: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 66 | template <> struct hash::Type> : public unary_function::Type, size_t> | ^~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/mindthegap-2.3.0/src/IGraphOutput.cpp:20: /build/reproducible-path/mindthegap-2.3.0/src/IGraphOutput.hpp:54:61: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | template <> struct hash::Type> : public unary_function::Type, size_t> | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/12/bits/refwrap.h:39, from /usr/include/c++/12/vector:66, from /usr/include/gatb/system/api/types.hpp:44, from /usr/include/gatb/system/api/IMemory.hpp:34, from /usr/include/gatb/system/impl/MemoryCommon.hpp:31, from /usr/include/gatb/system/impl/System.hpp:32, from /usr/include/gatb/gatb_core.hpp:31, from /build/reproducible-path/mindthegap-2.3.0/src/IGraphOutput.hpp:24: /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/mindthegap-2.3.0/src/IGraphOutput.hpp:58:61: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 58 | template <> struct hash::Type> : public unary_function::Type, size_t> | ^~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/mindthegap-2.3.0/src/IGraphOutput.hpp:62:61: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 62 | template <> struct hash::Type> : public unary_function::Type, size_t> | ^~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/mindthegap-2.3.0/src/IGraphOutput.hpp:66:61: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 66 | template <> struct hash::Type> : public unary_function::Type, size_t> | ^~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/mindthegap-2.3.0/src/GraphOutputDot.hpp:24, from /build/reproducible-path/mindthegap-2.3.0/src/GraphOutputDot.cpp:20: /build/reproducible-path/mindthegap-2.3.0/src/IGraphOutput.hpp:54:61: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | template <> struct hash::Type> : public unary_function::Type, size_t> | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/12/bits/refwrap.h:39, from /usr/include/c++/12/vector:66, from /usr/include/gatb/system/api/types.hpp:44, from /usr/include/gatb/system/api/IMemory.hpp:34, from /usr/include/gatb/system/impl/MemoryCommon.hpp:31, from /usr/include/gatb/system/impl/System.hpp:32, from /usr/include/gatb/gatb_core.hpp:31, from /build/reproducible-path/mindthegap-2.3.0/src/IGraphOutput.hpp:24: /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/mindthegap-2.3.0/src/IGraphOutput.hpp:58:61: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 58 | template <> struct hash::Type> : public unary_function::Type, size_t> | ^~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/mindthegap-2.3.0/src/IGraphOutput.hpp:62:61: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 62 | template <> struct hash::Type> : public unary_function::Type, size_t> | ^~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/mindthegap-2.3.0/src/IGraphOutput.hpp:66:61: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 66 | template <> struct hash::Type> : public unary_function::Type, size_t> | ^~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/mindthegap-2.3.0/src/Filler.cpp: In member function 'void Filler::writeFilledBreakpoint(std::vector&, std::string, std::string)': /build/reproducible-path/mindthegap-2.3.0/src/Filler.cpp:1052:65: warning: format '%f' expects argument of type 'double', but argument 6 has type 'const char*' [-Wformat=] 1052 | fprintf(_insert_file,">%s_len_%d_qual_%i_avg_cov_%.2f_median_cov_%.2f %s\n", | ~~~^ | | | double | %.2s 1053 | seedName.c_str(),llen,it->qual,solu_i.c_str() | ~~~~~~~~~~~~~~ | | | const char* /build/reproducible-path/mindthegap-2.3.0/src/Filler.cpp:1052:86: warning: format '%s' expects argument of type 'char*', but argument 8 has type 'double' [-Wformat=] 1052 | fprintf(_insert_file,">%s_len_%d_qual_%i_avg_cov_%.2f_median_cov_%.2f %s\n", | ~^ | | | char* | %f 1053 | seedName.c_str(),llen,it->qual,solu_i.c_str() 1054 | ,it->avg_coverage,it->median_coverage); | ~~~~~~~~~~~~~~~~~~~ | | | double In file included from /build/reproducible-path/mindthegap-2.3.0/src/Finder.cpp:22: /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp: In instantiation of 'void FindBreakpoints::writeIndel(int, std::string&, uint64_t, std::string, std::string, int, std::string) [with long unsigned int span = 128; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]': /build/reproducible-path/mindthegap-2.3.0/src/FindHeteroInsertion.hpp:119:30: required from 'bool FindHeteroInsertion::update() [with long unsigned int span = 128]' /build/reproducible-path/mindthegap-2.3.0/src/FindHeteroInsertion.hpp:48:6: required from here /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp:693:46: warning: format '%lli' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 693 | fprintf(this->finder->_vcf_file, "%s\t%lli\tbkpt%i\t%s\t%s\t.\tPASS\tTYPE=INS;LEN=%i;FUZZY=%i\tGT\t%s\n", | ~~~^ | | | long long int | %li 694 | chrom_name.c_str(), 695 | position + 1, //switch to 1-based | ~~~~~~~~~~~~ | | | uint64_t {aka long unsigned int} /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp: In instantiation of 'void FindBreakpoints::writeBreakpoint(int, std::string&, uint64_t, std::string&, std::string&, int, std::string, bool, bool) [with long unsigned int span = 128; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]': /build/reproducible-path/mindthegap-2.3.0/src/FindHeteroInsertion.hpp:145:57: required from 'bool FindHeteroInsertion::update() [with long unsigned int span = 128]' /build/reproducible-path/mindthegap-2.3.0/src/FindHeteroInsertion.hpp:48:6: required from here /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp:642:63: warning: format '%lli' expects argument of type 'long long int', but argument 5 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 642 | fprintf(this->finder->_breakpoint_file,">bkpt%i_%s_pos_%lli_fuzzy_%i_%s %s left_kmer\n%s\n>bkpt%i_%s_pos_%lli_fuzzy_%i_%s %s right_kmer\n%s\n", | ~~~^ | | | long long int | %li ...... 645 | position+1, //switch to 1-based | ~~~~~~~~~~ | | | uint64_t {aka long unsigned int} /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp:642:113: warning: format '%lli' expects argument of type 'long long int', but argument 12 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 642 | fprintf(this->finder->_breakpoint_file,">bkpt%i_%s_pos_%lli_fuzzy_%i_%s %s left_kmer\n%s\n>bkpt%i_%s_pos_%lli_fuzzy_%i_%s %s right_kmer\n%s\n", | ~~~^ | | | long long int | %li ...... 652 | position+1, //switch to 1-based | ~~~~~~~~~~ | | | uint64_t {aka long unsigned int} /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp: In instantiation of 'void FindBreakpoints::writeVcfVariant(int, std::string&, uint64_t, char*, char*, int, std::string) [with long unsigned int span = 128; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]': /build/reproducible-path/mindthegap-2.3.0/src/FindDeletion.hpp:158:30: required from 'bool FindDeletion::update() [with long unsigned int span = 128]' /build/reproducible-path/mindthegap-2.3.0/src/FindDeletion.hpp:62:6: required from here /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp:668:49: warning: format '%lli' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 668 | fprintf(this->finder->_vcf_file,"%s\t%lli\tbkpt%i\t%s\t%s\t.\tPASS\tTYPE=%s;LEN=%i;FUZZY=%i\tGT\t1/1\n", | ~~~^ | | | long long int | %li 669 | chrom_name.c_str(), 670 | position+1, //switch to 1-based | ~~~~~~~~~~ | | | uint64_t {aka long unsigned int} /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp: In instantiation of 'void FindBreakpoints::writeIndel(int, std::string&, uint64_t, std::string, std::string, int, std::string) [with long unsigned int span = 96; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]': /build/reproducible-path/mindthegap-2.3.0/src/FindHeteroInsertion.hpp:119:30: required from 'bool FindHeteroInsertion::update() [with long unsigned int span = 96]' /build/reproducible-path/mindthegap-2.3.0/src/FindHeteroInsertion.hpp:48:6: required from here /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp:693:46: warning: format '%lli' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 693 | fprintf(this->finder->_vcf_file, "%s\t%lli\tbkpt%i\t%s\t%s\t.\tPASS\tTYPE=INS;LEN=%i;FUZZY=%i\tGT\t%s\n", | ~~~^ | | | long long int | %li 694 | chrom_name.c_str(), 695 | position + 1, //switch to 1-based | ~~~~~~~~~~~~ | | | uint64_t {aka long unsigned int} /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp: In instantiation of 'void FindBreakpoints::writeBreakpoint(int, std::string&, uint64_t, std::string&, std::string&, int, std::string, bool, bool) [with long unsigned int span = 96; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]': /build/reproducible-path/mindthegap-2.3.0/src/FindHeteroInsertion.hpp:145:57: required from 'bool FindHeteroInsertion::update() [with long unsigned int span = 96]' /build/reproducible-path/mindthegap-2.3.0/src/FindHeteroInsertion.hpp:48:6: required from here /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp:642:63: warning: format '%lli' expects argument of type 'long long int', but argument 5 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 642 | fprintf(this->finder->_breakpoint_file,">bkpt%i_%s_pos_%lli_fuzzy_%i_%s %s left_kmer\n%s\n>bkpt%i_%s_pos_%lli_fuzzy_%i_%s %s right_kmer\n%s\n", | ~~~^ | | | long long int | %li ...... 645 | position+1, //switch to 1-based | ~~~~~~~~~~ | | | uint64_t {aka long unsigned int} /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp:642:113: warning: format '%lli' expects argument of type 'long long int', but argument 12 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 642 | fprintf(this->finder->_breakpoint_file,">bkpt%i_%s_pos_%lli_fuzzy_%i_%s %s left_kmer\n%s\n>bkpt%i_%s_pos_%lli_fuzzy_%i_%s %s right_kmer\n%s\n", | ~~~^ | | | long long int | %li ...... 652 | position+1, //switch to 1-based | ~~~~~~~~~~ | | | uint64_t {aka long unsigned int} /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp: In instantiation of 'void FindBreakpoints::writeVcfVariant(int, std::string&, uint64_t, char*, char*, int, std::string) [with long unsigned int span = 96; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]': /build/reproducible-path/mindthegap-2.3.0/src/FindDeletion.hpp:158:30: required from 'bool FindDeletion::update() [with long unsigned int span = 96]' /build/reproducible-path/mindthegap-2.3.0/src/FindDeletion.hpp:62:6: required from here /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp:668:49: warning: format '%lli' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 668 | fprintf(this->finder->_vcf_file,"%s\t%lli\tbkpt%i\t%s\t%s\t.\tPASS\tTYPE=%s;LEN=%i;FUZZY=%i\tGT\t1/1\n", | ~~~^ | | | long long int | %li 669 | chrom_name.c_str(), 670 | position+1, //switch to 1-based | ~~~~~~~~~~ | | | uint64_t {aka long unsigned int} /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp: In instantiation of 'void FindBreakpoints::writeIndel(int, std::string&, uint64_t, std::string, std::string, int, std::string) [with long unsigned int span = 64; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]': /build/reproducible-path/mindthegap-2.3.0/src/FindHeteroInsertion.hpp:119:30: required from 'bool FindHeteroInsertion::update() [with long unsigned int span = 64]' /build/reproducible-path/mindthegap-2.3.0/src/FindHeteroInsertion.hpp:48:6: required from here /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp:693:46: warning: format '%lli' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 693 | fprintf(this->finder->_vcf_file, "%s\t%lli\tbkpt%i\t%s\t%s\t.\tPASS\tTYPE=INS;LEN=%i;FUZZY=%i\tGT\t%s\n", | ~~~^ | | | long long int | %li 694 | chrom_name.c_str(), 695 | position + 1, //switch to 1-based | ~~~~~~~~~~~~ | | | uint64_t {aka long unsigned int} /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp: In instantiation of 'void FindBreakpoints::writeBreakpoint(int, std::string&, uint64_t, std::string&, std::string&, int, std::string, bool, bool) [with long unsigned int span = 64; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]': /build/reproducible-path/mindthegap-2.3.0/src/FindHeteroInsertion.hpp:145:57: required from 'bool FindHeteroInsertion::update() [with long unsigned int span = 64]' /build/reproducible-path/mindthegap-2.3.0/src/FindHeteroInsertion.hpp:48:6: required from here /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp:642:63: warning: format '%lli' expects argument of type 'long long int', but argument 5 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 642 | fprintf(this->finder->_breakpoint_file,">bkpt%i_%s_pos_%lli_fuzzy_%i_%s %s left_kmer\n%s\n>bkpt%i_%s_pos_%lli_fuzzy_%i_%s %s right_kmer\n%s\n", | ~~~^ | | | long long int | %li ...... 645 | position+1, //switch to 1-based | ~~~~~~~~~~ | | | uint64_t {aka long unsigned int} /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp:642:113: warning: format '%lli' expects argument of type 'long long int', but argument 12 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 642 | fprintf(this->finder->_breakpoint_file,">bkpt%i_%s_pos_%lli_fuzzy_%i_%s %s left_kmer\n%s\n>bkpt%i_%s_pos_%lli_fuzzy_%i_%s %s right_kmer\n%s\n", | ~~~^ | | | long long int | %li ...... 652 | position+1, //switch to 1-based | ~~~~~~~~~~ | | | uint64_t {aka long unsigned int} /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp: In instantiation of 'void FindBreakpoints::writeVcfVariant(int, std::string&, uint64_t, char*, char*, int, std::string) [with long unsigned int span = 64; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]': /build/reproducible-path/mindthegap-2.3.0/src/FindDeletion.hpp:158:30: required from 'bool FindDeletion::update() [with long unsigned int span = 64]' /build/reproducible-path/mindthegap-2.3.0/src/FindDeletion.hpp:62:6: required from here /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp:668:49: warning: format '%lli' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 668 | fprintf(this->finder->_vcf_file,"%s\t%lli\tbkpt%i\t%s\t%s\t.\tPASS\tTYPE=%s;LEN=%i;FUZZY=%i\tGT\t1/1\n", | ~~~^ | | | long long int | %li 669 | chrom_name.c_str(), 670 | position+1, //switch to 1-based | ~~~~~~~~~~ | | | uint64_t {aka long unsigned int} /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp: In instantiation of 'void FindBreakpoints::writeIndel(int, std::string&, uint64_t, std::string, std::string, int, std::string) [with long unsigned int span = 32; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]': /build/reproducible-path/mindthegap-2.3.0/src/FindHeteroInsertion.hpp:119:30: required from 'bool FindHeteroInsertion::update() [with long unsigned int span = 32]' /build/reproducible-path/mindthegap-2.3.0/src/FindHeteroInsertion.hpp:48:6: required from here /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp:693:46: warning: format '%lli' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 693 | fprintf(this->finder->_vcf_file, "%s\t%lli\tbkpt%i\t%s\t%s\t.\tPASS\tTYPE=INS;LEN=%i;FUZZY=%i\tGT\t%s\n", | ~~~^ | | | long long int | %li 694 | chrom_name.c_str(), 695 | position + 1, //switch to 1-based | ~~~~~~~~~~~~ | | | uint64_t {aka long unsigned int} /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp: In instantiation of 'void FindBreakpoints::writeBreakpoint(int, std::string&, uint64_t, std::string&, std::string&, int, std::string, bool, bool) [with long unsigned int span = 32; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]': /build/reproducible-path/mindthegap-2.3.0/src/FindHeteroInsertion.hpp:145:57: required from 'bool FindHeteroInsertion::update() [with long unsigned int span = 32]' /build/reproducible-path/mindthegap-2.3.0/src/FindHeteroInsertion.hpp:48:6: required from here /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp:642:63: warning: format '%lli' expects argument of type 'long long int', but argument 5 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 642 | fprintf(this->finder->_breakpoint_file,">bkpt%i_%s_pos_%lli_fuzzy_%i_%s %s left_kmer\n%s\n>bkpt%i_%s_pos_%lli_fuzzy_%i_%s %s right_kmer\n%s\n", | ~~~^ | | | long long int | %li ...... 645 | position+1, //switch to 1-based | ~~~~~~~~~~ | | | uint64_t {aka long unsigned int} /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp:642:113: warning: format '%lli' expects argument of type 'long long int', but argument 12 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 642 | fprintf(this->finder->_breakpoint_file,">bkpt%i_%s_pos_%lli_fuzzy_%i_%s %s left_kmer\n%s\n>bkpt%i_%s_pos_%lli_fuzzy_%i_%s %s right_kmer\n%s\n", | ~~~^ | | | long long int | %li ...... 652 | position+1, //switch to 1-based | ~~~~~~~~~~ | | | uint64_t {aka long unsigned int} /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp: In instantiation of 'void FindBreakpoints::writeVcfVariant(int, std::string&, uint64_t, char*, char*, int, std::string) [with long unsigned int span = 32; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]': /build/reproducible-path/mindthegap-2.3.0/src/FindDeletion.hpp:158:30: required from 'bool FindDeletion::update() [with long unsigned int span = 32]' /build/reproducible-path/mindthegap-2.3.0/src/FindDeletion.hpp:62:6: required from here /build/reproducible-path/mindthegap-2.3.0/src/FindBreakpoints.hpp:668:49: warning: format '%lli' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 668 | fprintf(this->finder->_vcf_file,"%s\t%lli\tbkpt%i\t%s\t%s\t.\tPASS\tTYPE=%s;LEN=%i;FUZZY=%i\tGT\t1/1\n", | ~~~^ | | | long long int | %li 669 | chrom_name.c_str(), 670 | position+1, //switch to 1-based | ~~~~~~~~~~ | | | uint64_t {aka long unsigned int} [ 90%] Linking CXX executable bin/nwalign /usr/bin/cmake -E cmake_link_script CMakeFiles/nwalign.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mindthegap-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/nwalign.dir/src/nwAlign/nwalign.cpp.o -o bin/nwalign -L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/serial -lgatbcore -lhdf5 make[3]: Leaving directory '/build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu' [ 90%] Built target nwalign [100%] Linking CXX executable bin/MindTheGap /usr/bin/cmake -E cmake_link_script CMakeFiles/MindTheGap.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mindthegap-2.3.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/MindTheGap.dir/src/main.cpp.o CMakeFiles/MindTheGap.dir/src/Filler.cpp.o CMakeFiles/MindTheGap.dir/src/Finder.cpp.o CMakeFiles/MindTheGap.dir/src/GraphAnalysis.cpp.o CMakeFiles/MindTheGap.dir/src/GraphOutputDot.cpp.o CMakeFiles/MindTheGap.dir/src/IGraphOutput.cpp.o CMakeFiles/MindTheGap.dir/src/Utils.cpp.o -o bin/MindTheGap -L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/serial: -lgatbcore -lhdf5 make[3]: Leaving directory '/build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu' [100%] Built target MindTheGap make[2]: Leaving directory '/build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/mindthegap-2.3.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/mindthegap-2.3.0 -B/build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/mindthegap-2.3.0/debian/tmp/usr/bin/MindTheGap -- Set runtime path of "/build/reproducible-path/mindthegap-2.3.0/debian/tmp/usr/bin/MindTheGap" to "" make[1]: Leaving directory '/build/reproducible-path/mindthegap-2.3.0/obj-aarch64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mindthegap/usr/bin/MindTheGap was not linked against libhdf5_serial.so.103 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'mindthegap' in '../mindthegap_2.3.0-2_arm64.deb'. dpkg-deb: building package 'mindthegap-dbgsym' in '../mindthegap-dbgsym_2.3.0-2_arm64.deb'. dpkg-deb: building package 'mindthegap-examples' in '../mindthegap-examples_2.3.0-2_all.deb'. dpkg-genbuildinfo --build=binary -O../mindthegap_2.3.0-2_arm64.buildinfo dpkg-genchanges --build=binary -O../mindthegap_2.3.0-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2699321 and its subdirectories I: Current time: Sun Feb 9 02:51:02 -12 2025 I: pbuilder-time-stamp: 1739112662 Mon Jan 8 08:28:04 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Mon Jan 8 08:28:04 UTC 2024 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Mon Jan 8 08:29:06 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Mon Jan 8 08:29:07 UTC 2024 I: mindthegap_2.3.0-2_arm64.changes: Format: 1.8 Date: Fri, 17 Feb 2023 17:54:57 -0500 Source: mindthegap Binary: mindthegap mindthegap-dbgsym mindthegap-examples Architecture: arm64 all Version: 2.3.0-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Sergio Durigan Junior Description: mindthegap - performs detection and assembly of DNA insertion variants in NGS mindthegap-examples - optional scripts and example resources for mindthegap Closes: 1031531 Changes: mindthegap (2.3.0-2) unstable; urgency=medium . * Team upload. * d/control: Only build on architectures supported by gatb-core. (Closes: #1031531) * d/control: Bump Standards-Version to 4.6.2; no changes needed. Checksums-Sha1: 854b8c9e3ce7f95f55024d4822918ef3ad21b07c 3307872 mindthegap-dbgsym_2.3.0-2_arm64.deb b3bb488a065bd234f5ab589f95d226b0ce4400d2 648084 mindthegap-examples_2.3.0-2_all.deb a64cd959e4fd41a06d5a00f316f2818aa8bd0c38 6982 mindthegap_2.3.0-2_arm64.buildinfo 1751c882331672a6e16390fc97e0fac2c93c43f6 219044 mindthegap_2.3.0-2_arm64.deb Checksums-Sha256: f60ac927c6f16d8137fa8f714526b705e18023171b289856dd42f08f9cde79f8 3307872 mindthegap-dbgsym_2.3.0-2_arm64.deb f94c9d16273f7d1c662aef8da6413ed801cdaa8747b5e695e3d41ccb6d5c1990 648084 mindthegap-examples_2.3.0-2_all.deb 6d1dcc2159cf65c3986ef53a89a5e621c336ba8681366709771cf5637da066f2 6982 mindthegap_2.3.0-2_arm64.buildinfo 362236bd1aee474099c378bfda0abc6a72030b952f66bc650a01bcb95dfa13fc 219044 mindthegap_2.3.0-2_arm64.deb Files: a2a262a5c18fa44de36204249d04b0f5 3307872 debug optional mindthegap-dbgsym_2.3.0-2_arm64.deb 0598f5f77011cab4421af0d8929f26cf 648084 science optional mindthegap-examples_2.3.0-2_all.deb b397bbadcaa094d991cfa32cc85ab635 6982 science optional mindthegap_2.3.0-2_arm64.buildinfo 4ed74ce9ee6c928506570fb4077c9714 219044 science optional mindthegap_2.3.0-2_arm64.deb Mon Jan 8 08:29:08 UTC 2024 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ZNtOiPvy/mindthegap_2.3.0-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ZNtOiPvy/mindthegap_2.3.0-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ZNtOiPvy/mindthegap_2.3.0-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ZNtOiPvy/b1/mindthegap_2.3.0-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ZNtOiPvy/b2/mindthegap_2.3.0-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.305s) 0.305s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.050s) 0.050s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Mon Jan 8 08:29:08 UTC 2024 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Mon Jan 8 08:29:08 UTC 2024 I: mindthegap from bookworm built successfully and reproducibly on arm64. Mon Jan 8 08:29:14 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Jan 8 08:29:14 UTC 2024 I: Submitting 8.0K b1/mindthegap_2.3.0-2_arm64.buildinfo.asc Mon Jan 8 08:29:16 UTC 2024 I: Submitting 8.0K b2/mindthegap_2.3.0-2_arm64.buildinfo.asc Mon Jan 8 08:29:16 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Jan 8 08:29:16 UTC 2024 I: Done submitting .buildinfo files. Mon Jan 8 08:29:16 UTC 2024 I: Removing signed mindthegap_2.3.0-2_arm64.buildinfo.asc files: removed './b1/mindthegap_2.3.0-2_arm64.buildinfo.asc' removed './b2/mindthegap_2.3.0-2_arm64.buildinfo.asc'