Fri Apr 21 08:17:32 UTC 2023 I: starting to build librostlab-blast/bookworm/arm64 on jenkins on '2023-04-21 08:17' Fri Apr 21 08:17:32 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_12/6817/console.log Fri Apr 21 08:17:32 UTC 2023 I: Downloading source for bookworm/librostlab-blast=1.0.1-13 --2023-04-21 08:17:32-- http://cdn-fastly.deb.debian.org/debian/pool/main/libr/librostlab-blast/librostlab-blast_1.0.1-13.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2522 (2.5K) [text/prs.lines.tag] Saving to: ‘librostlab-blast_1.0.1-13.dsc’ 0K .. 100% 190M=0s 2023-04-21 08:17:32 (190 MB/s) - ‘librostlab-blast_1.0.1-13.dsc’ saved [2522/2522] Fri Apr 21 08:17:32 UTC 2023 I: librostlab-blast_1.0.1-13.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: librostlab-blast Binary: librostlab-blast0v5, librostlab-blast0-dev, librostlab-blast-doc Architecture: any all Version: 1.0.1-13 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille Homepage: https://rostlab.org/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/librostlab-blast Vcs-Git: https://salsa.debian.org/med-team/librostlab-blast.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), d-shlibs, bison, doxygen, flex, graphviz, texlive-latex-recommended, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra Package-List: librostlab-blast-doc deb doc optional arch=all librostlab-blast0-dev deb libdevel optional arch=any librostlab-blast0v5 deb libs optional arch=any Checksums-Sha1: 5b5cff416807dae2daad3d17540c7fa70bb8bc70 384023 librostlab-blast_1.0.1.orig.tar.gz 666d475fcd709b263d5a16d8402a51e82b93ad20 6540 librostlab-blast_1.0.1-13.debian.tar.xz Checksums-Sha256: 7c0a0181253b3006585b7ffb755fb9720181e70d91dd25ec511b5d88bd6ece45 384023 librostlab-blast_1.0.1.orig.tar.gz 067fb54fe8f18a5ef1d982aca23e52ce4685adf5e4609b8d3f40245a9d13283e 6540 librostlab-blast_1.0.1-13.debian.tar.xz Files: da93e9eed00ac33083748462b50f673f 384023 librostlab-blast_1.0.1.orig.tar.gz 0738f235ddc4811b63d72af1aedfda01 6540 librostlab-blast_1.0.1-13.debian.tar.xz Dgit: c34fec849576d38fb1b7f38f56213c8398901edb debian archive/debian/1.0.1-13 https://git.dgit.debian.org/librostlab-blast -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmM1lEoUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqZUxAApKCSbeWPhjzSQl157vn7rjWM1Nn9 9dX9rM4VrgZsMfpg/2tNe72QLxjf/aXNaSykR61EnyaNzfU1Ds3qyChIS7XdE/75 AS5EF1NLTGX9cFjsGWzvGX34MbhmsuLovK60yyVKit/Jbv7nF/zOJ1Lm2ziuvyPy mi8VeR0l3SjOnccAglAZm3UM8jvhXFgjLQgCoEFCfbmUDDP3MO1lO0NcYmrPCKfI CpL09vxa4OFonescTqwTPp4RYFqEMwsXOIvuwSDHTx9fhVsB5J66GEJVNNdeN3y2 lOqsWiQh1zePEQfU9nFoVytEzaMRP9ko3z9aehhp1Uyoir2mNjLvO2UX9WdlZk7f f7HZ9bCT/RzZgHPmJ1z9wJRUciIU/WJxBV4WvCkYMYv10WK6cTBDSfj3YpeY0orI y67xDqUOt/rO3zapsYN4DnzHppdr4bFqhAB06j41p363D5qIIReVW2O2DX4keeAl J4eIOziDH1UlbSQE3PVRG8l3zjR9NDNKahKbyJkE7CGJ1ETx/zaL5gigZ9MXB/0u f0oZ+m8Hy5icHIFLyJysmmMtjA3TEFkU/0YR5I8vUW9cCetMhm4WZ2rgtcYTXoGb omQS0jk+trCoto51UspI/6xWg8DowJbT6S522VEHWboSYUV+7LROdnk5AERgLzCX 24yMdVySdt/9N+Y= =/Y7G -----END PGP SIGNATURE----- Fri Apr 21 08:17:32 UTC 2023 I: Checking whether the package is not for us Fri Apr 21 08:17:32 UTC 2023 I: Starting 1st build on remote node codethink11-arm64.debian.net. Fri Apr 21 08:17:32 UTC 2023 I: Preparing to do remote build '1' on codethink11-arm64.debian.net. Fri Apr 21 08:23:20 UTC 2023 I: Deleting $TMPDIR on codethink11-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu May 23 02:40:35 -12 2024 I: pbuilder-time-stamp: 1716475235 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [librostlab-blast_1.0.1-13.dsc] I: copying [./librostlab-blast_1.0.1.orig.tar.gz] I: copying [./librostlab-blast_1.0.1-13.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Sep 29 00:49:14 2022 -12 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./librostlab-blast_1.0.1-13.dsc: no acceptable signature found dpkg-source: info: extracting librostlab-blast in librostlab-blast-1.0.1 dpkg-source: info: unpacking librostlab-blast_1.0.1.orig.tar.gz dpkg-source: info: unpacking librostlab-blast_1.0.1-13.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying reproducible.patch dpkg-source: info: applying modernize_c++.patch dpkg-source: info: applying gcc-12.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/20785/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='20785' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ULew5YrW/pbuilderrc_S9x6 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ULew5YrW/b1 --logfile b1/build.log librostlab-blast_1.0.1-13.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink11-arm64 4.15.0-209-generic #220-Ubuntu SMP Tue Mar 21 19:52:44 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 21 04:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/20785/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, bison, doxygen, flex, graphviz, texlive-latex-recommended, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on bison; however: Package bison is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. pbuilder-satisfydepends-dummy depends on graphviz; however: Package graphviz is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on librostlab-dev; however: Package librostlab-dev is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bison{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} flex{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} intltool-debian{a} libabsl20220623{a} libann0{a} libaom3{a} libapache-pom-java{a} libarchive-zip-perl{a} libavif15{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcdt5{a} libcgraph6{a} libclang-cpp14{a} libclang1-14{a} libcommons-logging-java{a} libcommons-parent-java{a} libdatrie1{a} libdav1d6{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontbox-java{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libglib2.0-0{a} libgraphite2-3{a} libgts-0.7-5{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libheif1{a} libice6{a} libicu72{a} libjbig0{a} libjpeg62-turbo{a} libkpathsea6{a} liblab-gamut1{a} liblerc4{a} libllvm14{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libnuma1{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpathplan4{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libptexenc1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} librav1e0{a} libreadline8{a} librostlab3{a} librostlab3-dev{a} libsm6{a} libsub-override-perl{a} libsvtav1enc1{a} libsynctex2{a} libteckit0{a} libtexlua53-5{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx265-199{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6{a} libyuv0{a} libz3-4{a} libzzip-0-13{a} m4{a} man-db{a} media-types{a} po-debconf{a} preview-latex-style{a} python3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} ucf{a} x11-common{a} xdg-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl default-jre dvisvgm fonts-liberation2 libarchive-cpio-perl libfile-mimeinfo-perl libfl-dev libglib2.0-data libgts-bin libltdl-dev libmail-sendmail-perl libnet-dbus-perl libspreadsheet-parseexcel-perl libx11-protocol-perl lmodern lynx ruby shared-mime-info tex-gyre texlive-plain-generic tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 144 newly installed, 0 to remove and 0 not upgraded. Need to get 180 MB of archives. After unpacking 711 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 flex arm64 2.6.4-8.1 [430 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-minimal arm64 3.11.2-6 [806 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 python3.11-minimal arm64 3.11.2-6 [1858 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 python3-minimal arm64 3.11.2-1+b1 [26.3 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 media-types all 10.0.0 [26.1 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-stdlib arm64 3.11.2-6 [1747 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 python3.11 arm64 3.11.2-6 [572 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 libpython3-stdlib arm64 3.11.2-1+b1 [9296 B] Get: 13 http://deb.debian.org/debian bookworm/main arm64 python3 arm64 3.11.2-1+b1 [26.3 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 bison arm64 2:3.8.2+dfsg-1+b1 [1152 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 d-shlibs all 0.104 [18.6 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 36 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 37 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 38 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.1+b3 [619 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 libbsd0 arm64 0.11.7-2 [115 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 libedit2 arm64 3.1-20221030-2 [88.1 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 libz3-4 arm64 4.8.12-3.1 [6282 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 libllvm14 arm64 1:14.0.6-12 [19.3 MB] Get: 50 http://deb.debian.org/debian bookworm/main arm64 libclang-cpp14 arm64 1:14.0.6-12 [9866 kB] Get: 51 http://deb.debian.org/debian bookworm/main arm64 libclang1-14 arm64 1:14.0.6-12 [5465 kB] Get: 52 http://deb.debian.org/debian bookworm/main arm64 doxygen arm64 1.9.4-4 [4216 kB] Get: 53 http://deb.debian.org/debian bookworm/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB] Get: 54 http://deb.debian.org/debian bookworm/main arm64 libpng16-16 arm64 1.6.39-2 [269 kB] Get: 55 http://deb.debian.org/debian bookworm/main arm64 libfreetype6 arm64 2.12.1+dfsg-4 [369 kB] Get: 56 http://deb.debian.org/debian bookworm/main arm64 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 57 http://deb.debian.org/debian bookworm/main arm64 fontconfig-config arm64 2.14.1-4 [315 kB] Get: 58 http://deb.debian.org/debian bookworm/main arm64 libfontconfig1 arm64 2.14.1-4 [381 kB] Get: 59 http://deb.debian.org/debian bookworm/main arm64 fontconfig arm64 2.14.1-4 [449 kB] Get: 60 http://deb.debian.org/debian bookworm/main arm64 fonts-lmodern all 2.005-1 [4540 kB] Get: 61 http://deb.debian.org/debian bookworm/main arm64 libann0 arm64 1.1.2+doc-9+b1 [23.6 kB] Get: 62 http://deb.debian.org/debian bookworm/main arm64 libcdt5 arm64 2.42.2-7+b3 [38.6 kB] Get: 63 http://deb.debian.org/debian bookworm/main arm64 libcgraph6 arm64 2.42.2-7+b3 [60.0 kB] Get: 64 http://deb.debian.org/debian bookworm/main arm64 libaom3 arm64 3.6.0-1 [1379 kB] Get: 65 http://deb.debian.org/debian bookworm/main arm64 libdav1d6 arm64 1.0.0-2 [274 kB] Get: 66 http://deb.debian.org/debian bookworm/main arm64 libabsl20220623 arm64 20220623.1-1 [363 kB] Get: 67 http://deb.debian.org/debian bookworm/main arm64 libgav1-1 arm64 0.18.0-1+b1 [425 kB] Get: 68 http://deb.debian.org/debian bookworm/main arm64 librav1e0 arm64 0.5.1-6 [552 kB] Get: 69 http://deb.debian.org/debian bookworm/main arm64 libsvtav1enc1 arm64 1.4.1+dfsg-1 [1074 kB] Get: 70 http://deb.debian.org/debian bookworm/main arm64 libjpeg62-turbo arm64 1:2.1.5-2 [171 kB] Get: 71 http://deb.debian.org/debian bookworm/main arm64 libyuv0 arm64 0.0~git20230123.b2528b0-1 [122 kB] Get: 72 http://deb.debian.org/debian bookworm/main arm64 libavif15 arm64 0.11.1-1 [88.3 kB] Get: 73 http://deb.debian.org/debian bookworm/main arm64 libde265-0 arm64 1.0.11-1 [148 kB] Get: 74 http://deb.debian.org/debian bookworm/main arm64 libnuma1 arm64 2.0.16-1 [20.3 kB] Get: 75 http://deb.debian.org/debian bookworm/main arm64 libx265-199 arm64 3.5-2+b1 [603 kB] Get: 76 http://deb.debian.org/debian bookworm/main arm64 libheif1 arm64 1.15.1-1 [191 kB] Get: 77 http://deb.debian.org/debian bookworm/main arm64 libdeflate0 arm64 1.14-1 [54.3 kB] Get: 78 http://deb.debian.org/debian bookworm/main arm64 libjbig0 arm64 2.1-6.1 [30.0 kB] Get: 79 http://deb.debian.org/debian bookworm/main arm64 liblerc4 arm64 4.0.0+ds-2 [138 kB] Get: 80 http://deb.debian.org/debian bookworm/main arm64 libwebp7 arm64 1.2.4-0.1 [259 kB] Get: 81 http://deb.debian.org/debian bookworm/main arm64 libtiff6 arm64 4.5.0-5 [300 kB] Get: 82 http://deb.debian.org/debian bookworm/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 83 http://deb.debian.org/debian bookworm/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 84 http://deb.debian.org/debian bookworm/main arm64 libxcb1 arm64 1.15-1 [143 kB] Get: 85 http://deb.debian.org/debian bookworm/main arm64 libx11-data all 2:1.8.4-2 [292 kB] Get: 86 http://deb.debian.org/debian bookworm/main arm64 libx11-6 arm64 2:1.8.4-2 [736 kB] Get: 87 http://deb.debian.org/debian bookworm/main arm64 libxpm4 arm64 1:3.5.12-1.1 [45.2 kB] Get: 88 http://deb.debian.org/debian bookworm/main arm64 libgd3 arm64 2.3.3-9 [113 kB] Get: 89 http://deb.debian.org/debian bookworm/main arm64 libglib2.0-0 arm64 2.74.6-2 [1310 kB] Get: 90 http://deb.debian.org/debian bookworm/main arm64 libgts-0.7-5 arm64 0.7.6+darcs121130-5+b1 [142 kB] Get: 91 http://deb.debian.org/debian bookworm/main arm64 libpixman-1-0 arm64 0.42.2-1 [470 kB] Get: 92 http://deb.debian.org/debian bookworm/main arm64 libxcb-render0 arm64 1.15-1 [115 kB] Get: 93 http://deb.debian.org/debian bookworm/main arm64 libxcb-shm0 arm64 1.15-1 [106 kB] Get: 94 http://deb.debian.org/debian bookworm/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB] Get: 95 http://deb.debian.org/debian bookworm/main arm64 libxrender1 arm64 1:0.9.10-1.1 [32.0 kB] Get: 96 http://deb.debian.org/debian bookworm/main arm64 libcairo2 arm64 1.16.0-7 [527 kB] Get: 97 http://deb.debian.org/debian bookworm/main arm64 libltdl7 arm64 2.4.7-5 [392 kB] Get: 98 http://deb.debian.org/debian bookworm/main arm64 libfribidi0 arm64 1.0.8-2.1 [64.9 kB] Get: 99 http://deb.debian.org/debian bookworm/main arm64 libgraphite2-3 arm64 1.3.14-1 [75.6 kB] Get: 100 http://deb.debian.org/debian bookworm/main arm64 libharfbuzz0b arm64 6.0.0+dfsg-3 [1914 kB] Get: 101 http://deb.debian.org/debian bookworm/main arm64 libthai-data all 0.1.29-1 [176 kB] Get: 102 http://deb.debian.org/debian bookworm/main arm64 libdatrie1 arm64 0.2.13-2+b1 [42.6 kB] Get: 103 http://deb.debian.org/debian bookworm/main arm64 libthai0 arm64 0.1.29-1 [56.2 kB] Get: 104 http://deb.debian.org/debian bookworm/main arm64 libpango-1.0-0 arm64 1.50.12+ds-1 [200 kB] Get: 105 http://deb.debian.org/debian bookworm/main arm64 libpangoft2-1.0-0 arm64 1.50.12+ds-1 [44.5 kB] Get: 106 http://deb.debian.org/debian bookworm/main arm64 libpangocairo-1.0-0 arm64 1.50.12+ds-1 [32.0 kB] Get: 107 http://deb.debian.org/debian bookworm/main arm64 libpathplan4 arm64 2.42.2-7+b3 [40.4 kB] Get: 108 http://deb.debian.org/debian bookworm/main arm64 libgvc6 arm64 2.42.2-7+b3 [613 kB] Get: 109 http://deb.debian.org/debian bookworm/main arm64 libgvpr2 arm64 2.42.2-7+b3 [177 kB] Get: 110 http://deb.debian.org/debian bookworm/main arm64 liblab-gamut1 arm64 2.42.2-7+b3 [198 kB] Get: 111 http://deb.debian.org/debian bookworm/main arm64 x11-common all 1:7.7+23 [252 kB] Get: 112 http://deb.debian.org/debian bookworm/main arm64 libice6 arm64 2:1.0.10-1 [55.6 kB] Get: 113 http://deb.debian.org/debian bookworm/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB] Get: 114 http://deb.debian.org/debian bookworm/main arm64 libxt6 arm64 1:1.2.1-1.1 [172 kB] Get: 115 http://deb.debian.org/debian bookworm/main arm64 libxmu6 arm64 2:1.1.3-3 [57.2 kB] Get: 116 http://deb.debian.org/debian bookworm/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] Get: 117 http://deb.debian.org/debian bookworm/main arm64 graphviz arm64 2.42.2-7+b3 [567 kB] Get: 118 http://deb.debian.org/debian bookworm/main arm64 libapache-pom-java all 29-2 [5276 B] Get: 119 http://deb.debian.org/debian bookworm/main arm64 libcommons-parent-java all 56-1 [10.8 kB] Get: 120 http://deb.debian.org/debian bookworm/main arm64 libcommons-logging-java all 1.2-3 [62.4 kB] Get: 121 http://deb.debian.org/debian bookworm/main arm64 libfontbox-java all 1:1.8.16-2 [211 kB] Get: 122 http://deb.debian.org/debian bookworm/main arm64 libkpathsea6 arm64 2022.20220321.62855-5 [148 kB] Get: 123 http://deb.debian.org/debian bookworm/main arm64 libpaper1 arm64 1.1.29 [12.6 kB] Get: 124 http://deb.debian.org/debian bookworm/main arm64 libpaper-utils arm64 1.1.29 [8776 B] Get: 125 http://deb.debian.org/debian bookworm/main arm64 libpdfbox-java all 1:1.8.16-2 [5205 kB] Get: 126 http://deb.debian.org/debian bookworm/main arm64 libptexenc1 arm64 2022.20220321.62855-5 [42.7 kB] Get: 127 http://deb.debian.org/debian bookworm/main arm64 librostlab3 arm64 1.0.20-12 [6624 B] Get: 128 http://deb.debian.org/debian bookworm/main arm64 librostlab3-dev arm64 1.0.20-12 [14.1 kB] Get: 129 http://deb.debian.org/debian bookworm/main arm64 libsynctex2 arm64 2022.20220321.62855-5 [57.0 kB] Get: 130 http://deb.debian.org/debian bookworm/main arm64 libteckit0 arm64 2.5.11+ds1-1+b1 [299 kB] Get: 131 http://deb.debian.org/debian bookworm/main arm64 libtexlua53-5 arm64 2022.20220321.62855-5 [102 kB] Get: 132 http://deb.debian.org/debian bookworm/main arm64 libxi6 arm64 2:1.8-1+b1 [82.3 kB] Get: 133 http://deb.debian.org/debian bookworm/main arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [58.3 kB] Get: 134 http://deb.debian.org/debian bookworm/main arm64 tex-common all 6.18 [32.5 kB] Get: 135 http://deb.debian.org/debian bookworm/main arm64 preview-latex-style all 12.2-1 [201 kB] Get: 136 http://deb.debian.org/debian bookworm/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get: 137 http://deb.debian.org/debian bookworm/main arm64 texlive-binaries arm64 2022.20220321.62855-5 [7570 kB] Get: 138 http://deb.debian.org/debian bookworm/main arm64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 139 http://deb.debian.org/debian bookworm/main arm64 texlive-base all 2022.20230122-3 [21.9 MB] Get: 140 http://deb.debian.org/debian bookworm/main arm64 texlive-fonts-recommended all 2022.20230122-3 [4988 kB] Get: 141 http://deb.debian.org/debian bookworm/main arm64 texlive-latex-base all 2022.20230122-3 [1182 kB] Get: 142 http://deb.debian.org/debian bookworm/main arm64 texlive-latex-recommended all 2022.20230122-3 [8880 kB] Get: 143 http://deb.debian.org/debian bookworm/main arm64 texlive-pictures all 2022.20230122-3 [15.8 MB] Get: 144 http://deb.debian.org/debian bookworm/main arm64 texlive-latex-extra all 2022.20230122-3 [19.2 MB] Fetched 180 MB in 5s (38.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package m4. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../archives/m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package flex. Preparing to unpack .../flex_2.6.4-8.1_arm64.deb ... Unpacking flex (2.6.4-8.1) ... Selecting previously unselected package libpython3.11-minimal:arm64. Preparing to unpack .../libpython3.11-minimal_3.11.2-6_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.2-6) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.5.0-1_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_arm64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:arm64 (3.11.2-6) ... Setting up libexpat1:arm64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20114 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_arm64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../3-libreadline8_8.2-1.3_arm64.deb ... Unpacking libreadline8:arm64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:arm64. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_arm64.deb ... Unpacking libpython3.11-stdlib:arm64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_arm64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20548 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_arm64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../003-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../006-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../008-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../009-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../010-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package ucf. Preparing to unpack .../011-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package autoconf. Preparing to unpack .../012-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../013-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../014-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../015-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package bison. Preparing to unpack .../016-bison_2%3a3.8.2+dfsg-1+b1_arm64.deb ... Unpacking bison (2:3.8.2+dfsg-1+b1) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../017-d-shlibs_0.104_all.deb ... Unpacking d-shlibs (0.104) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../018-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../019-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../020-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../021-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../022-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../023-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../024-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../025-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../026-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../027-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../028-libxml2_2.9.14+dfsg-1.1+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.1+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../029-gettext_0.21-12_arm64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../030-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../031-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../032-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../033-libbsd0_0.11.7-2_arm64.deb ... Unpacking libbsd0:arm64 (0.11.7-2) ... Selecting previously unselected package libedit2:arm64. Preparing to unpack .../034-libedit2_3.1-20221030-2_arm64.deb ... Unpacking libedit2:arm64 (3.1-20221030-2) ... Selecting previously unselected package libz3-4:arm64. Preparing to unpack .../035-libz3-4_4.8.12-3.1_arm64.deb ... Unpacking libz3-4:arm64 (4.8.12-3.1) ... Selecting previously unselected package libllvm14:arm64. Preparing to unpack .../036-libllvm14_1%3a14.0.6-12_arm64.deb ... Unpacking libllvm14:arm64 (1:14.0.6-12) ... Selecting previously unselected package libclang-cpp14. Preparing to unpack .../037-libclang-cpp14_1%3a14.0.6-12_arm64.deb ... Unpacking libclang-cpp14 (1:14.0.6-12) ... Selecting previously unselected package libclang1-14. Preparing to unpack .../038-libclang1-14_1%3a14.0.6-12_arm64.deb ... Unpacking libclang1-14 (1:14.0.6-12) ... Selecting previously unselected package doxygen. Preparing to unpack .../039-doxygen_1.9.4-4_arm64.deb ... Unpacking doxygen (1.9.4-4) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../040-libbrotli1_1.0.9-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b6) ... Selecting previously unselected package libpng16-16:arm64. Preparing to unpack .../041-libpng16-16_1.6.39-2_arm64.deb ... Unpacking libpng16-16:arm64 (1.6.39-2) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../042-libfreetype6_2.12.1+dfsg-4_arm64.deb ... Unpacking libfreetype6:arm64 (2.12.1+dfsg-4) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../043-fonts-dejavu-core_2.37-6_all.deb ... Unpacking fonts-dejavu-core (2.37-6) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../044-fontconfig-config_2.14.1-4_arm64.deb ... Unpacking fontconfig-config (2.14.1-4) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../045-libfontconfig1_2.14.1-4_arm64.deb ... Unpacking libfontconfig1:arm64 (2.14.1-4) ... Selecting previously unselected package fontconfig. Preparing to unpack .../046-fontconfig_2.14.1-4_arm64.deb ... Unpacking fontconfig (2.14.1-4) ... Selecting previously unselected package fonts-lmodern. Preparing to unpack .../047-fonts-lmodern_2.005-1_all.deb ... Unpacking fonts-lmodern (2.005-1) ... Selecting previously unselected package libann0. Preparing to unpack .../048-libann0_1.1.2+doc-9+b1_arm64.deb ... Unpacking libann0 (1.1.2+doc-9+b1) ... Selecting previously unselected package libcdt5:arm64. Preparing to unpack .../049-libcdt5_2.42.2-7+b3_arm64.deb ... Unpacking libcdt5:arm64 (2.42.2-7+b3) ... Selecting previously unselected package libcgraph6:arm64. Preparing to unpack .../050-libcgraph6_2.42.2-7+b3_arm64.deb ... Unpacking libcgraph6:arm64 (2.42.2-7+b3) ... Selecting previously unselected package libaom3:arm64. Preparing to unpack .../051-libaom3_3.6.0-1_arm64.deb ... Unpacking libaom3:arm64 (3.6.0-1) ... Selecting previously unselected package libdav1d6:arm64. Preparing to unpack .../052-libdav1d6_1.0.0-2_arm64.deb ... Unpacking libdav1d6:arm64 (1.0.0-2) ... Selecting previously unselected package libabsl20220623:arm64. Preparing to unpack .../053-libabsl20220623_20220623.1-1_arm64.deb ... Unpacking libabsl20220623:arm64 (20220623.1-1) ... Selecting previously unselected package libgav1-1:arm64. Preparing to unpack .../054-libgav1-1_0.18.0-1+b1_arm64.deb ... Unpacking libgav1-1:arm64 (0.18.0-1+b1) ... Selecting previously unselected package librav1e0:arm64. Preparing to unpack .../055-librav1e0_0.5.1-6_arm64.deb ... Unpacking librav1e0:arm64 (0.5.1-6) ... Selecting previously unselected package libsvtav1enc1:arm64. Preparing to unpack .../056-libsvtav1enc1_1.4.1+dfsg-1_arm64.deb ... Unpacking libsvtav1enc1:arm64 (1.4.1+dfsg-1) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../057-libjpeg62-turbo_1%3a2.1.5-2_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.1.5-2) ... Selecting previously unselected package libyuv0:arm64. Preparing to unpack .../058-libyuv0_0.0~git20230123.b2528b0-1_arm64.deb ... Unpacking libyuv0:arm64 (0.0~git20230123.b2528b0-1) ... Selecting previously unselected package libavif15:arm64. Preparing to unpack .../059-libavif15_0.11.1-1_arm64.deb ... Unpacking libavif15:arm64 (0.11.1-1) ... Selecting previously unselected package libde265-0:arm64. Preparing to unpack .../060-libde265-0_1.0.11-1_arm64.deb ... Unpacking libde265-0:arm64 (1.0.11-1) ... Selecting previously unselected package libnuma1:arm64. Preparing to unpack .../061-libnuma1_2.0.16-1_arm64.deb ... Unpacking libnuma1:arm64 (2.0.16-1) ... Selecting previously unselected package libx265-199:arm64. Preparing to unpack .../062-libx265-199_3.5-2+b1_arm64.deb ... 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Setting up media-types (10.0.0) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libgraphite2-3:arm64 (1.3.14-1) ... Setting up libpixman-1-0:arm64 (0.42.2-1) ... Setting up libaom3:arm64 (3.6.0-1) ... Setting up libabsl20220623:arm64 (20220623.1-1) ... Setting up libxau6:arm64 (1:1.0.9-1) ... Setting up libicu72:arm64 (72.1-3) ... Setting up liblerc4:arm64 (4.0.0+ds-2) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libdatrie1:arm64 (0.2.13-2+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:arm64 (2.74.6-2) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b6) ... Setting up libfontbox-java (1:1.8.16-2) ... Setting up liblab-gamut1:arm64 (2.42.2-7+b3) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libmagic1:arm64 (1:5.44-3) ... Setting up libdeflate0:arm64 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... Setting up file (1:5.44-3) ... Setting up libsvtav1enc1:arm64 (1.4.1+dfsg-1) ... Setting up libjbig0:arm64 (2.1-6.1) ... Setting up librav1e0:arm64 (0.5.1-6) ... Setting up libgts-0.7-5:arm64 (0.7.6+darcs121130-5+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:arm64 (4.8.12-3.1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-2) ... Setting up libx11-data (2:1.8.4-2) ... Setting up libteckit0:arm64 (2.5.11+ds1-1+b1) ... Setting up libpathplan4:arm64 (2.42.2-7+b3) ... Setting up libapache-pom-java (29-2) ... Setting up libann0 (1.1.2+doc-9+b1) ... Setting up libfribidi0:arm64 (1.0.8-2.1) ... Setting up t1utils (1.41-4) ... Setting up libtexlua53-5:arm64 (2022.20220321.62855-5) ... Setting up libpng16-16:arm64 (1.6.39-2) ... Setting up autopoint (0.21-12) ... 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Setting up libyuv0:arm64 (0.0~git20230123.b2528b0-1) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.1+b3) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libsynctex2:arm64 (2022.20220321.62855-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libice6:arm64 (2:1.0.10-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up flex (2.6.4-8.1) ... Setting up libxcb1:arm64 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libpdfbox-java (1:1.8.16-2) ... Setting up libavif15:arm64 (0.11.1-1) ... Setting up libtool (2.4.7-5) ... Setting up libxcb-render0:arm64 (1.15-1) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libedit2:arm64 (3.1-20221030-2) ... Setting up libreadline8:arm64 (8.2-1.3) ... Setting up libcommons-parent-java (56-1) ... Setting up libcommons-logging-java (1.2-3) ... Setting up libxcb-shm0:arm64 (1.15-1) ... Setting up librostlab3-dev (1.0.20-12) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:arm64 (0.1.29-1) ... Setting up libptexenc1:arm64 (2022.20220321.62855-5) ... Setting up libfreetype6:arm64 (2.12.1+dfsg-4) ... Setting up ucf (3.0043+nmu1) ... Setting up libx265-199:arm64 (3.5-2+b1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libllvm14:arm64 (1:14.0.6-12) ... Setting up libgvpr2:arm64 (2.42.2-7+b3) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libx11-6:arm64 (2:1.8.4-2) ... Setting up libharfbuzz0b:arm64 (6.0.0+dfsg-3) ... Setting up libfontconfig1:arm64 (2.14.1-4) ... Setting up libsm6:arm64 (2:1.2.3-1) ... Setting up libpaper1:arm64 (1.1.29) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libxpm4:arm64 (1:3.5.12-1.1) ... Setting up libxrender1:arm64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.2-6) ... Setting up libpango-1.0-0:arm64 (1.50.12+ds-1) ... Setting up libheif1:arm64 (1.15.1-1) ... Setting up libxext6:arm64 (2:1.3.4-1+b1) ... Setting up libclang1-14 (1:14.0.6-12) ... Setting up libpaper-utils (1.1.29) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:arm64 (1.16.0-7) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libgd3:arm64 (2.3.3-9) ... Setting up libclang-cpp14 (1:14.0.6-12) ... Setting up libxt6:arm64 (1:1.2.1-1.1) ... Setting up libpangoft2-1.0-0:arm64 (1.50.12+ds-1) ... Setting up libpangocairo-1.0-0:arm64 (1.50.12+ds-1) ... Setting up libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libxmu6:arm64 (2:1.1.3-3) ... Setting up libxi6:arm64 (2:1.8-1+b1) ... Setting up preview-latex-style (12.2-1) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up libxaw7:arm64 (2:1.0.14-1) ... Setting up doxygen (1.9.4-4) ... Setting up libgvc6 (2.42.2-7+b3) ... Setting up texlive-binaries (2022.20220321.62855-5) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2022.20230122-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up graphviz (2.42.2-7+b3) ... Setting up texlive-latex-base (2022.20230122-3) ... Setting up texlive-latex-recommended (2022.20230122-3) ... Setting up texlive-pictures (2022.20230122-3) ... Setting up texlive-fonts-recommended (2022.20230122-3) ... Setting up texlive-latex-extra (2022.20230122-3) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/librostlab-blast-1.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../librostlab-blast_1.0.1-13_source.changes dpkg-buildpackage: info: source package librostlab-blast dpkg-buildpackage: info: source version 1.0.1-13 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/librostlab-blast-1.0.1' dh_auto_clean rm -f lib/librostlab-blast.tag make[1]: Leaving directory '/build/librostlab-blast-1.0.1' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:9: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:9: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:11: warning: AC_PROG_LEX without either yywrap or noyywrap is obsolete ./lib/autoconf/programs.m4:716: _AC_PROG_LEX is expanded from... ./lib/autoconf/programs.m4:709: AC_PROG_LEX is expanded from... configure.ac:11: the top level configure.ac:7: installing './compile' configure.ac:5: installing './missing' lib/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/librostlab-blast-1.0.1' dh_auto_configure -- --enable-doxygen-dot --enable-doxygen-pdf=No ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-doxygen-dot --enable-doxygen-pdf=No checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for bison... bison -y checking for flex... flex checking for lex output file root... lex.yy checking for lex library... none needed checking for library containing yywrap... no checking whether yytext is a pointer... yes checking for rostlab/aux_functions.h... yes checking for rostlab/rostlab_stdexcept.h... yes checking for doxygen... /usr/bin/doxygen checking for perl... /usr/bin/perl checking for dot... /usr/bin/dot checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating lib/Makefile config.status: creating lib/Doxyfile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make[1]: Leaving directory '/build/librostlab-blast-1.0.1' debian/rules override_dh_auto_build make[1]: Entering directory '/build/librostlab-blast-1.0.1' dh_auto_build make -j8 make[2]: Entering directory '/build/librostlab-blast-1.0.1' make all-recursive make[3]: Entering directory '/build/librostlab-blast-1.0.1' Making all in lib make[4]: Entering directory '/build/librostlab-blast-1.0.1/lib' mkdir -p rostlab /bin/bash ../ylwrap blast-parser-scanner.lpp lex.yy.c blast-parser-scanner.cpp -- flex /bin/bash ../ylwrap blast-parser-parser.ypp y.tab.c blast-parser-parser.cpp y.tab.h rostlab/blast-parser-parser.h y.output blast-parser-parser.output stack.hh rostlab/blast-parser-stack.h location.hh rostlab/blast-parser-location.h position.hh rostlab/blast-parser-position.h -- bison -y /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:1.1-9: warning: POSIX Yacc does not support %skeleton [-Wyacc] 1 | %skeleton "lalr1.cc" | ^~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:1.11-20: warning: POSIX Yacc does not support string literals [-Wyacc] 1 | %skeleton "lalr1.cc" | ^~~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:20.1-8: warning: POSIX Yacc does not support %require [-Wyacc] 20 | %require "2.4.1" | ^~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:20.10-16: warning: POSIX Yacc does not support string literals [-Wyacc] 20 | %require "2.4.1" | ^~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:21.1-8: warning: POSIX Yacc does not support %defines [-Wyacc] 21 | %defines | ^~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:22.1-7: warning: POSIX Yacc does not support %define [-Wyacc] 22 | %define namespace "rostlab::blast" | ^~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:22.19-34: warning: POSIX Yacc does not support string literals [-Wyacc] 22 | %define namespace "rostlab::blast" | ^~~~~~~~~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:22.1-34: warning: deprecated directive: '%define namespace "rostlab::blast"', use '%define api.namespace {rostlab::blast}' [-Wdeprecated] 22 | %define namespace "rostlab::blast" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | %define api.namespace {rostlab::blast} /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:24.1-5: warning: POSIX Yacc does not support %code [-Wyacc] 24 | %code requires { | ^~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:37.1-14: warning: POSIX Yacc does not support %error-verbose [-Wyacc] 37 | %error-verbose | ^~~~~~~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:37.1-14: warning: deprecated directive: '%error-verbose', use '%define parse.error verbose' [-Wdeprecated] 37 | %error-verbose | ^~~~~~~~~~~~~~ | %define parse.error verbose /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:39.1-15: warning: POSIX Yacc does not support %initial-action [-Wyacc] 39 | %initial-action | ^~~~~~~~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:53.1-5: warning: POSIX Yacc does not support %code [-Wyacc] 53 | %code { | ^~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:59.29-41: warning: POSIX Yacc does not support string literals [-Wyacc] 59 | %token END 0 "end of file" | ^~~~~~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:72.29-36: warning: POSIX Yacc does not support string literals [-Wyacc] 72 | %token QUERYEQ "Query=" | ^~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:73.29-39: warning: POSIX Yacc does not support string literals [-Wyacc] 73 | %token DATABASECOLON "Database:" | ^~~~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:74.29-48: warning: POSIX Yacc does not support string literals [-Wyacc] 74 | %token RESFROMROUND "Results from round" | ^~~~~~~~~~~~~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:75.29-37: warning: POSIX Yacc does not support string literals [-Wyacc] 75 | %token SCOREEQ "Score =" | ^~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:76.29-38: warning: POSIX Yacc does not support string literals [-Wyacc] 76 | %token EXPECTEQ "Expect =" | ^~~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:77.29-37: warning: POSIX Yacc does not support string literals [-Wyacc] 77 | %token METHODCOLON "Method:" | ^~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:78.29-42: warning: POSIX Yacc does not support string literals [-Wyacc] 78 | %token IDENTITIESEQ "Identities =" | ^~~~~~~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:79.29-41: warning: POSIX Yacc does not support string literals [-Wyacc] 79 | %token POSITIVESEQ "Positives =" | ^~~~~~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:80.29-36: warning: POSIX Yacc does not support string literals [-Wyacc] 80 | %token GAPSEQ "Gaps =" | ^~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:81.29-38: warning: POSIX Yacc does not support string literals [-Wyacc] 81 | %token STRANDEQ "Strand =" | ^~~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:82.29-37: warning: POSIX Yacc does not support string literals [-Wyacc] 82 | %token FRAMEEQ "Frame =" | ^~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:83.29-36: warning: POSIX Yacc does not support string literals [-Wyacc] 83 | %token QUERYCOLON "Query:" | ^~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:84.29-36: warning: POSIX Yacc does not support string literals [-Wyacc] 84 | %token SBJCTCOLON "Sbjct:" | ^~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:88.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 88 | %destructor { delete $$; } | ^~~~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:90.1-8: warning: POSIX Yacc does not support %printer [-Wyacc] 90 | %printer { debug_stream () << *$$; } | ^~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:91.1-8: warning: POSIX Yacc does not support %printer [-Wyacc] 91 | %printer { debug_stream () << $$; } | ^~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:109.9-16: warning: POSIX Yacc does not support string literals [-Wyacc] 109 | query: "Query=" STRING INT | ^~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:122.11-21: warning: POSIX Yacc does not support string literals [-Wyacc] 122 | database: "Database:" STRING INT INT | ^~~~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:137.15-34: warning: POSIX Yacc does not support string literals [-Wyacc] 137 | | "Results from round" INT | ^~~~~~~~~~~~~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:201.19-27: warning: POSIX Yacc does not support string literals [-Wyacc] 201 | hsp_headerfield: "Score =" num INT | ^~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:203.19-28: warning: POSIX Yacc does not support string literals [-Wyacc] 203 | | "Expect =" num | ^~~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:205.19-27: warning: POSIX Yacc does not support string literals [-Wyacc] 205 | | "Method:" STRING | ^~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:207.19-32: warning: POSIX Yacc does not support string literals [-Wyacc] 207 | | "Identities =" INT | ^~~~~~~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:209.19-31: warning: POSIX Yacc does not support string literals [-Wyacc] 209 | | "Positives =" INT | ^~~~~~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:211.19-26: warning: POSIX Yacc does not support string literals [-Wyacc] 211 | | "Gaps =" INT | ^~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:213.19-28: warning: POSIX Yacc does not support string literals [-Wyacc] 213 | | "Strand =" STRING '/' STRING | ^~~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:215.19-27: warning: POSIX Yacc does not support string literals [-Wyacc] 215 | | "Frame =" INT '/' INT | ^~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:217.19-27: warning: POSIX Yacc does not support string literals [-Wyacc] 217 | | "Frame =" INT | ^~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:224.15-22: warning: POSIX Yacc does not support string literals [-Wyacc] 224 | alitriple: "Query:" INT STRING INT STRING "Sbjct:" INT STRING INT | ^~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:224.46-53: warning: POSIX Yacc does not support string literals [-Wyacc] 224 | alitriple: "Query:" INT STRING INT STRING "Sbjct:" INT STRING INT | ^~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:247.15-22: warning: POSIX Yacc does not support string literals [-Wyacc] 247 | | "Query:" '0' /* bug as far as I can tell */ | ^~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:22.1-34: warning: %define variable 'api.namespace' requires '{...}' values [-Wdeprecated] 22 | %define namespace "rostlab::blast" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] updating rostlab/blast-parser-location.h updating rostlab/blast-parser-position.h updating rostlab/blast-parser-stack.h updating rostlab/blast-parser-parser.h sed -i -e 's,\by.tab.h\b,rostlab/blast-parser-parser.h,g' blast-parser-parser.cpp sed -i -e 's,\bstack.hh\b,rostlab/blast-parser-stack.h,g;s,\blocation.hh\b,rostlab/blast-parser-location.h,g;' rostlab/blast-parser-parser.h sed -i -e 's,\bposition.hh\b,rostlab/blast-parser-position.h,g;' rostlab/blast-parser-location.h make all-am make[5]: Entering directory '/build/librostlab-blast-1.0.1/lib' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/librostlab-blast-1.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o librostlab_blast_la-blast-parser-driver.lo `test -f 'blast-parser-driver.cpp' || echo './'`blast-parser-driver.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/librostlab-blast-1.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o librostlab_blast_la-blast-parser-parser.lo `test -f 'blast-parser-parser.cpp' || echo './'`blast-parser-parser.cpp \ \ /bin/bash ../ylwrap `test -f 'blast-parser-scanner.lpp' || echo './'`blast-parser-scanner.lpp lex.yy.c librostlab_blast_la-blast-parser-scanner.cpp -- flex -Cfe libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/librostlab-blast-1.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -c blast-parser-driver.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-driver.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/librostlab-blast-1.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -c blast-parser-parser.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-parser.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/librostlab-blast-1.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.lo `test -f 'librostlab_blast_la-blast-parser-scanner.cpp' || echo './'`librostlab_blast_la-blast-parser-scanner.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/librostlab-blast-1.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -c librostlab_blast_la-blast-parser-scanner.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/librostlab-blast-1.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -c blast-parser-driver.cpp -o librostlab_blast_la-blast-parser-driver.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/librostlab-blast-1.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -c blast-parser-parser.cpp -o librostlab_blast_la-blast-parser-parser.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/librostlab-blast-1.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -c librostlab_blast_la-blast-parser-scanner.cpp -o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -Wall -g -O2 -ffile-prefix-map=/build/librostlab-blast-1.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 0:0:0 -Wall -Wl,-z,relro -Wl,-z,now -o librostlab-blast.la -rpath /usr/lib/aarch64-linux-gnu librostlab_blast_la-blast-parser-driver.lo librostlab_blast_la-blast-parser-parser.lo librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/12/crtbeginS.o .libs/librostlab_blast_la-blast-parser-driver.o .libs/librostlab_blast_la-blast-parser-parser.o .libs/librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o -L/usr/lib/gcc/aarch64-linux-gnu/12 -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/12/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/12/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/12/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,librostlab-blast.so.0 -o .libs/librostlab-blast.so.0.0.0 libtool: link: (cd ".libs" && rm -f "librostlab-blast.so.0" && ln -s "librostlab-blast.so.0.0.0" "librostlab-blast.so.0") libtool: link: (cd ".libs" && rm -f "librostlab-blast.so" && ln -s "librostlab-blast.so.0.0.0" "librostlab-blast.so") libtool: link: ar cr .libs/librostlab-blast.a librostlab_blast_la-blast-parser-driver.o librostlab_blast_la-blast-parser-parser.o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o libtool: link: ranlib .libs/librostlab-blast.a libtool: link: ( cd ".libs" && rm -f "librostlab-blast.la" && ln -s "../librostlab-blast.la" "librostlab-blast.la" ) make[5]: Leaving directory '/build/librostlab-blast-1.0.1/lib' make[4]: Leaving directory '/build/librostlab-blast-1.0.1/lib' make[4]: Entering directory '/build/librostlab-blast-1.0.1' make[4]: Leaving directory '/build/librostlab-blast-1.0.1' make[3]: Leaving directory '/build/librostlab-blast-1.0.1' make[2]: Leaving directory '/build/librostlab-blast-1.0.1' /usr/bin/make -C lib doxygen-doc make[2]: Entering directory '/build/librostlab-blast-1.0.1/lib' rm -rf ../doxygen-doc SRCDIR='.' PROJECT='librostlab-blast' DOCDIR='../doxygen-doc' VERSION='1.0.1' PERL_PATH='/usr/bin/perl' HAVE_DOT='YES' DOT_PATH='/usr/bin' GENERATE_MAN='NO' GENERATE_RTF='NO' GENERATE_XML='NO' GENERATE_HTMLHELP='NO' GENERATE_CHI='NO' GENERATE_HTML='YES' GENERATE_LATEX='NO' /usr/bin/doxygen ./Doxyfile warning: Tag 'SYMBOL_CACHE_SIZE' at line 290 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 490 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 761 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_ALIGN_MEMBERS' at line 847 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'USE_INLINE_TREES' at line 1032 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1165 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 1257 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_DTD' at line 1263 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 1428 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 1441 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 1450 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. error: Tag file '/usr/share/doc/librostlab-doc/librostlab.tag' does not exist or is not a file. Skipping it... /build/librostlab-blast-1.0.1/lib/rostlab/blast-parser-location.h:34: warning: the name 'location.hh' supplied as the argument in the \file statement is not an input file /build/librostlab-blast-1.0.1/lib/rostlab/blast-parser-parser.h:35: warning: the name 'y.tab.h' supplied as the argument in the \file statement is not an input file Doxygen version used: 1.9.4 Notice: Output directory '../doxygen-doc' does not exist. I have created it for you. Searching for include files... Searching for example files... Searching for files in directory /build/librostlab-blast-1.0.1/examples Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/librostlab-blast-1.0.1/lib/rostlab Reading and parsing tag files Parsing files Preprocessing /build/librostlab-blast-1.0.1/lib/rostlab/blast-parser-driver.h... Parsing file /build/librostlab-blast-1.0.1/lib/rostlab/blast-parser-driver.h... Preprocessing /build/librostlab-blast-1.0.1/lib/rostlab/blast-parser-location.h... Parsing file /build/librostlab-blast-1.0.1/lib/rostlab/blast-parser-location.h... Preprocessing /build/librostlab-blast-1.0.1/lib/rostlab/blast-parser-parser.h... Parsing file /build/librostlab-blast-1.0.1/lib/rostlab/blast-parser-parser.h... Preprocessing /build/librostlab-blast-1.0.1/lib/rostlab/blast-parser-position.h... Parsing file /build/librostlab-blast-1.0.1/lib/rostlab/blast-parser-position.h... Preprocessing /build/librostlab-blast-1.0.1/lib/rostlab/blast-parser-stack.h... Parsing file /build/librostlab-blast-1.0.1/lib/rostlab/blast-parser-stack.h... Preprocessing /build/librostlab-blast-1.0.1/lib/rostlab/blast-result.h... Parsing file /build/librostlab-blast-1.0.1/lib/rostlab/blast-result.h... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file rostlab/blast-parser-driver.h... Generating code for file rostlab/blast-parser-location.h... Generating code for file rostlab/blast-parser-parser.h... Generating code for file rostlab/blast-parser-position.h... Generating code for file rostlab/blast-parser-stack.h... Generating code for file rostlab/blast-result.h... Generating file documentation... Generating docs for file rostlab/blast-parser-driver.h... Generating docs for file rostlab/blast-parser-location.h... Generating docs for file rostlab/blast-parser-parser.h... Generating docs for file rostlab/blast-parser-position.h... Generating docs for file rostlab/blast-parser-stack.h... Generating docs for file rostlab/blast-result.h... Generating page documentation... Generating group documentation... Generating class documentation... Generating concept documentation... Generating namespace index... Generating docs for namespace rostlab Generating docs for namespace rostlab::blast Generating docs for compound rostlab::blast::hit... Generating docs for compound rostlab::blast::hsp... Generating docs for compound rostlab::blast::location... Generating docs for compound rostlab::blast::oneline... Generating docs for compound rostlab::blast::parser... Generating docs for nested compound rostlab::blast::parser::basic_symbol... Generating docs for nested compound rostlab::blast::parser::by_kind... Generating docs for nested compound rostlab::blast::parser::context... Generating docs for nested compound rostlab::blast::parser::stack::slice... Generating docs for nested compound rostlab::blast::parser::symbol_kind... Generating docs for nested compound rostlab::blast::parser::symbol_type... Generating docs for nested compound rostlab::blast::parser::syntax_error... Generating docs for nested compound rostlab::blast::parser::token... Generating docs for nested compound rostlab::blast::parser::value_type... Generating docs for compound rostlab::blast::parser_driver... Generating docs for compound rostlab::blast::parser_error... Generating docs for compound rostlab::blast::position... Generating docs for compound rostlab::blast::result... Generating docs for compound rostlab::blast::round... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating graphical class hierarchy... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... Running dot... Generating dot graphs using 9 parallel threads... Running dot for graph 1/56 Running dot for graph 2/56 Running dot for graph 3/56 Running dot for graph 4/56 Running dot for graph 5/56 Running dot for graph 6/56 Running dot for graph 7/56 Running dot for graph 8/56 Running dot for graph 9/56 Running dot for graph 10/56 Running dot for graph 11/56 Running dot for graph 12/56 Running dot for graph 13/56 Running dot for graph 14/56 Running dot for graph 15/56 Running dot for graph 16/56 Running dot for graph 17/56 Running dot for graph 18/56 Running dot for graph 19/56 Running dot for graph 20/56 Running dot for graph 21/56 Running dot for graph 22/56 Running dot for graph 23/56 Running dot for graph 24/56 Running dot for graph 25/56 Running dot for graph 26/56 Running dot for graph 27/56 Running dot for graph 28/56 Running dot for graph 29/56 Running dot for graph 30/56 Running dot for graph 31/56 Running dot for graph 32/56 Running dot for graph 33/56 Running dot for graph 34/56 Running dot for graph 35/56 Running dot for graph 36/56 Running dot for graph 37/56 Running dot for graph 38/56 Running dot for graph 39/56 Running dot for graph 40/56 Running dot for graph 41/56 Running dot for graph 42/56 Running dot for graph 43/56 Running dot for graph 44/56 Running dot for graph 45/56 Running dot for graph 46/56 Running dot for graph 47/56 Running dot for graph 48/56 Running dot for graph 49/56 Running dot for graph 50/56 Running dot for graph 51/56 Running dot for graph 52/56 Running dot for graph 53/56 Running dot for graph 54/56 Running dot for graph 55/56 Running dot for graph 56/56 Patching output file 1/23 Patching output file 2/23 Patching output file 3/23 Patching output file 4/23 Patching output file 5/23 Patching output file 6/23 Patching output file 7/23 Patching output file 8/23 Patching output file 9/23 Patching output file 10/23 Patching output file 11/23 Patching output file 12/23 Patching output file 13/23 Patching output file 14/23 Patching output file 15/23 Patching output file 16/23 Patching output file 17/23 Patching output file 18/23 Patching output file 19/23 Patching output file 20/23 Patching output file 21/23 Patching output file 22/23 Patching output file 23/23 lookup cache used 647/65536 hits=3167 misses=740 finished... make[2]: Leaving directory '/build/librostlab-blast-1.0.1/lib' make[1]: Leaving directory '/build/librostlab-blast-1.0.1' dh_auto_test make -j8 check "TESTSUITEFLAGS=-j8 --verbose" VERBOSE=1 make[1]: Entering directory '/build/librostlab-blast-1.0.1' Making check in lib make[2]: Entering directory '/build/librostlab-blast-1.0.1/lib' make check-am make[3]: Entering directory '/build/librostlab-blast-1.0.1/lib' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/librostlab-blast-1.0.1/lib' make[2]: Leaving directory '/build/librostlab-blast-1.0.1/lib' make[2]: Entering directory '/build/librostlab-blast-1.0.1' make[2]: Leaving directory '/build/librostlab-blast-1.0.1' make[1]: Leaving directory '/build/librostlab-blast-1.0.1' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/librostlab-blast-1.0.1/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/librostlab-blast-1.0.1' Making install in lib make[2]: Entering directory '/build/librostlab-blast-1.0.1/lib' make install-am make[3]: Entering directory '/build/librostlab-blast-1.0.1/lib' make[4]: Entering directory '/build/librostlab-blast-1.0.1/lib' /usr/bin/mkdir -p '/build/librostlab-blast-1.0.1/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c librostlab-blast.la '/build/librostlab-blast-1.0.1/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/librostlab-blast.so.0.0.0 /build/librostlab-blast-1.0.1/debian/tmp/usr/lib/aarch64-linux-gnu/librostlab-blast.so.0.0.0 libtool: install: (cd /build/librostlab-blast-1.0.1/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f librostlab-blast.so.0.0.0 librostlab-blast.so.0 || { rm -f librostlab-blast.so.0 && ln -s librostlab-blast.so.0.0.0 librostlab-blast.so.0; }; }) libtool: install: (cd /build/librostlab-blast-1.0.1/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f librostlab-blast.so.0.0.0 librostlab-blast.so || { rm -f librostlab-blast.so && ln -s librostlab-blast.so.0.0.0 librostlab-blast.so; }; }) libtool: install: /usr/bin/install -c .libs/librostlab-blast.lai /build/librostlab-blast-1.0.1/debian/tmp/usr/lib/aarch64-linux-gnu/librostlab-blast.la libtool: install: /usr/bin/install -c .libs/librostlab-blast.a /build/librostlab-blast-1.0.1/debian/tmp/usr/lib/aarch64-linux-gnu/librostlab-blast.a libtool: install: chmod 644 /build/librostlab-blast-1.0.1/debian/tmp/usr/lib/aarch64-linux-gnu/librostlab-blast.a libtool: install: ranlib /build/librostlab-blast-1.0.1/debian/tmp/usr/lib/aarch64-linux-gnu/librostlab-blast.a libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/librostlab-blast-1.0.1/debian/tmp/usr/include/rostlab' /usr/bin/install -c -m 644 rostlab/blast-parser-driver.h rostlab/blast-result.h '/build/librostlab-blast-1.0.1/debian/tmp/usr/include/rostlab' /usr/bin/mkdir -p '/build/librostlab-blast-1.0.1/debian/tmp/usr/include/rostlab' /usr/bin/install -c -m 644 rostlab/blast-parser-location.h rostlab/blast-parser-parser.h rostlab/blast-parser-position.h rostlab/blast-parser-stack.h '/build/librostlab-blast-1.0.1/debian/tmp/usr/include/rostlab' make[4]: Leaving directory '/build/librostlab-blast-1.0.1/lib' make[3]: Leaving directory '/build/librostlab-blast-1.0.1/lib' make[2]: Leaving directory '/build/librostlab-blast-1.0.1/lib' make[2]: Entering directory '/build/librostlab-blast-1.0.1' make[3]: Entering directory '/build/librostlab-blast-1.0.1' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/librostlab-blast-1.0.1/debian/tmp/usr/share/doc/librostlab-blast/examples' /usr/bin/install -c -m 644 examples/converged.ali examples/parseblast.cpp '/build/librostlab-blast-1.0.1/debian/tmp/usr/share/doc/librostlab-blast/examples' make[3]: Leaving directory '/build/librostlab-blast-1.0.1' make[2]: Leaving directory '/build/librostlab-blast-1.0.1' make[1]: Leaving directory '/build/librostlab-blast-1.0.1' debian/rules override_dh_install make[1]: Entering directory '/build/librostlab-blast-1.0.1' d-shlibmove --commit \ --multiarch \ --exclude-la \ --v5 \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/librostlab-blast0-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/librostlab-blast0v5/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/librostlab-blast.a debian/librostlab-blast0-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/librostlab-blast.so debian/librostlab-blast0-dev/usr/lib/aarch64-linux-gnu mv /build/librostlab-blast-1.0.1/debian/tmp/usr/lib/aarch64-linux-gnu/librostlab-blast.so.0 debian/librostlab-blast0v5/usr/lib/aarch64-linux-gnu mv /build/librostlab-blast-1.0.1/debian/tmp/usr/lib/aarch64-linux-gnu/librostlab-blast.so.0.0.0 debian/librostlab-blast0v5/usr/lib/aarch64-linux-gnu PKGDEV=librostlab-blast0-dev PKGSHL=librostlab-blast0v5 install -d -m 755 debian/librostlab-blast0-dev/usr/include mv debian/tmp/usr/include/rostlab debian/librostlab-blast0-dev/usr/include find debian -name "lib*.la" -delete make[1]: Leaving directory '/build/librostlab-blast-1.0.1' debian/rules override_dh_installdocs-indep make[1]: Entering directory '/build/librostlab-blast-1.0.1' dh_installdocs dh_installdocs: warning: Cannot auto-detect main package for librostlab-blast-doc. If the default is wrong, please use --doc-main-package find debian -name "*.md5" -delete sed -i 's@/.*/lib/rostlab/@/fakebuildpath/lib/rostlab/@' \ debian/librostlab-blast-doc/usr/share/doc/librostlab-blast-doc/librostlab-blast.tag make[1]: Leaving directory '/build/librostlab-blast-1.0.1' dh_installdocs -Nlibrostlab-blast-doc dh_installchangelogs dh_installexamples dh_perl debian/rules override_dh_link make[1]: Entering directory '/build/librostlab-blast-1.0.1' find debian -name jquery.js -delete dh_link make[1]: Leaving directory '/build/librostlab-blast-1.0.1' dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/librostlab-blast-1.0.1' dh_compress -Xlibrostlab-blast.tag make[1]: Leaving directory '/build/librostlab-blast-1.0.1' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package librostlab-blast-doc: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'librostlab-blast0v5' in '../librostlab-blast0v5_1.0.1-13_arm64.deb'. dpkg-deb: building package 'librostlab-blast0v5-dbgsym' in '../librostlab-blast0v5-dbgsym_1.0.1-13_arm64.deb'. dpkg-deb: building package 'librostlab-blast0-dev' in '../librostlab-blast0-dev_1.0.1-13_arm64.deb'. dpkg-deb: building package 'librostlab-blast-doc' in '../librostlab-blast-doc_1.0.1-13_all.deb'. dpkg-genbuildinfo --build=binary -O../librostlab-blast_1.0.1-13_arm64.buildinfo dpkg-genchanges --build=binary -O../librostlab-blast_1.0.1-13_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/20785 and its subdirectories I: Current time: Thu May 23 02:46:17 -12 2024 I: pbuilder-time-stamp: 1716475577 Fri Apr 21 08:23:21 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink16-arm64.debian.net. Fri Apr 21 08:23:21 UTC 2023 I: Preparing to do remote build '2' on codethink16-arm64.debian.net. Fri Apr 21 08:29:18 UTC 2023 I: Deleting $TMPDIR on codethink16-arm64.debian.net. Fri Apr 21 08:29:19 UTC 2023 I: librostlab-blast_1.0.1-13_arm64.changes: Format: 1.8 Date: Thu, 29 Sep 2022 14:37:03 +0200 Source: librostlab-blast Binary: librostlab-blast-doc librostlab-blast0-dev librostlab-blast0v5 librostlab-blast0v5-dbgsym Architecture: all arm64 Version: 1.0.1-13 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: librostlab-blast-doc - very fast C++ library for parsing the output of NCBI BLAST progra librostlab-blast0-dev - very fast C++ library for parsing the output of NCBI BLAST progra librostlab-blast0v5 - very fast C++ library for parsing the output of NCBI BLAST progra Closes: 1012990 Changes: librostlab-blast (1.0.1-13) unstable; urgency=medium . * Team upload. * gcc-12.patch: added; fix ftbfs with gcc-12. (Closes: #1012990) * Standards-Version: 4.6.1 (routine-update) * d/rules: filter librostlab-blast.tag to remove build path; attempt to improve build reproducibility. * d/rules: limit dh_installdocs to architecture independent builds. Checksums-Sha1: 33f0bb6c058601b469a56ffd41b2be4e671d3c43 361332 librostlab-blast-doc_1.0.1-13_all.deb e1cc836e2b03da5bad28e27481f34b897447c06b 89000 librostlab-blast0-dev_1.0.1-13_arm64.deb 489471ca15df24fcf9de5d927fc25f31f56417f8 405380 librostlab-blast0v5-dbgsym_1.0.1-13_arm64.deb 7d3901fd3cab427674cf9fd1653077571596f311 72732 librostlab-blast0v5_1.0.1-13_arm64.deb 72532960b944555b878480af8a3347ead4f36c37 9727 librostlab-blast_1.0.1-13_arm64.buildinfo Checksums-Sha256: a3a8b031b3461f4defb7ae056ce5f3db8668972b7e488243a9963164c1b0a75f 361332 librostlab-blast-doc_1.0.1-13_all.deb 9686370ca5b4089f3149fe308dbf1530ebfa38070cfdd46f850ef24a15c8e301 89000 librostlab-blast0-dev_1.0.1-13_arm64.deb 35cfec9180f8e8d7c5389bdfd58fcfb6525ae63e54a5f8913da69e59b783a4b6 405380 librostlab-blast0v5-dbgsym_1.0.1-13_arm64.deb 1b159b6467fc1fc9fbeeb6e1c643158f31c54021307207ba94e9eb9b09852e45 72732 librostlab-blast0v5_1.0.1-13_arm64.deb 2fc2484e65e5fa6e243941e6e86a8533829133ab26d94281157dcf685aab1081 9727 librostlab-blast_1.0.1-13_arm64.buildinfo Files: 6cc258226c10f1d21a403a145e978b67 361332 doc optional librostlab-blast-doc_1.0.1-13_all.deb 1d5eedb130e34c7f94467bfebdf0ac26 89000 libdevel optional librostlab-blast0-dev_1.0.1-13_arm64.deb ee2bce00e68eec4256a1c6219c390f80 405380 debug optional librostlab-blast0v5-dbgsym_1.0.1-13_arm64.deb cff4d64d9d3a55eb880613c1cc193475 72732 libs optional librostlab-blast0v5_1.0.1-13_arm64.deb cdac7b19850639d0df4f233928408b83 9727 science optional librostlab-blast_1.0.1-13_arm64.buildinfo Fri Apr 21 08:29:20 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ULew5YrW/librostlab-blast_1.0.1-13.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ULew5YrW/librostlab-blast_1.0.1-13.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ULew5YrW/librostlab-blast_1.0.1-13.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ULew5YrW/b1/librostlab-blast_1.0.1-13_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ULew5YrW/b2/librostlab-blast_1.0.1-13_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.438s) 0.438s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.027s) 0.026s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Fri Apr 21 08:29:21 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Fri Apr 21 08:29:21 UTC 2023 I: librostlab-blast from bookworm built successfully and reproducibly on arm64. Fri Apr 21 08:29:23 UTC 2023 I: Submitting .buildinfo files to external archives: Fri Apr 21 08:29:23 UTC 2023 I: Submitting 12K b1/librostlab-blast_1.0.1-13_arm64.buildinfo.asc Fri Apr 21 08:29:24 UTC 2023 I: Submitting 12K b2/librostlab-blast_1.0.1-13_arm64.buildinfo.asc Fri Apr 21 08:29:25 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Apr 21 08:29:25 UTC 2023 I: Done submitting .buildinfo files. Fri Apr 21 08:29:25 UTC 2023 I: Removing signed librostlab-blast_1.0.1-13_arm64.buildinfo.asc files: removed './b1/librostlab-blast_1.0.1-13_arm64.buildinfo.asc' removed './b2/librostlab-blast_1.0.1-13_arm64.buildinfo.asc'