Thu Jun 1 11:02:20 UTC 2023 I: starting to build libbio-variation-perl/bookworm/arm64 on jenkins on '2023-06-01 11:02' Thu Jun 1 11:02:20 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_23/110/console.log Thu Jun 1 11:02:20 UTC 2023 I: Downloading source for bookworm/libbio-variation-perl=1.7.5-3 --2023-06-01 11:02:20-- http://cdn-fastly.deb.debian.org/debian/pool/main/libb/libbio-variation-perl/libbio-variation-perl_1.7.5-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2259 (2.2K) [text/prs.lines.tag] Saving to: ‘libbio-variation-perl_1.7.5-3.dsc’ 0K .. 100% 268M=0s 2023-06-01 11:02:20 (268 MB/s) - ‘libbio-variation-perl_1.7.5-3.dsc’ saved [2259/2259] Thu Jun 1 11:02:20 UTC 2023 I: libbio-variation-perl_1.7.5-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-variation-perl Binary: libbio-variation-perl Architecture: all Version: 1.7.5-3 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://metacpan.org/release/Bio-Variation Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/libbio-variation-perl Vcs-Git: https://salsa.debian.org/med-team/libbio-variation-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: perl, libbio-perl-perl, libtest-most-perl, libbio-db-embl-perl, libio-string-perl, libxml-twig-perl, libxml-writer-perl Package-List: libbio-variation-perl deb perl optional arch=all Checksums-Sha1: 72fd802799ca83cf4a900710f09cd252dc59f665 60430 libbio-variation-perl_1.7.5.orig.tar.gz 2d464a4a7d9a574f378a46d7a2edf31ae5e65762 2176 libbio-variation-perl_1.7.5-3.debian.tar.xz Checksums-Sha256: 4bffdd060b5e793919f700e46056eb3f0195ed4df2e60ad68b383c31e51f824f 60430 libbio-variation-perl_1.7.5.orig.tar.gz 2ca70dc29abd5b8e4ee7659247d5d415c62d645cde7046ae5075b2b392b92546 2176 libbio-variation-perl_1.7.5-3.debian.tar.xz Files: 8495ecbaf4392ecd6d1d56127b4111a3 60430 libbio-variation-perl_1.7.5.orig.tar.gz 6b2aecb2d4e44634e1852c8f2c444b65 2176 libbio-variation-perl_1.7.5-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmGouOARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFW4BAAhMsOR9mZFTevkF8cd6SwVZafLY5sAh1w 1fX+5zahLOHFSBQP4kSeUyzVEifiMrc8CVjIVn3b1XVt/xL/H+fHU4U8F0f6MUEv paV1L6zOdzwKoxV33+C4dV82OjRIIohUqjBWA2k1FSK3qHdXs941ypCVWiLED3U4 AwYPFBJvVmnyCn1Jkcl2US/jol3XoBrZxlGHeS3ut/Z7GGSnwK9YIOuQ9xCHfsuM 8TPw1PbeTOtIr6mQaoQ7hXuX+s9OsbPuOcDeFE4j9fFPfkR8VjwfmkGqDb0sCrPR S3xGr+ZgvS/CGn1wB4Pq5JkKek7sZv+4P+fUOeqIu8lgs7JzjtbZmdiiwZ/kG5z0 qY7ufPr71aYJXwcVvLFarPaneoGav31YMMJ9BjiwakaR3Kf23GMcKWLNOCVj8Yei fAmZFMp/eHr1X+q8s9cM3oEpxNat2P9INAl0L6K3WMVRFKytNXaiHZVacijomYRE HQF0PIz8lMJg0a55Wb+vDvuvWMK/B4QEFy7dILZZJBZQFET9yt54wY/TKIdylqqR LK/A4brjGzjp2B8oZwCCVLt7PgQhjeQhTBkVXu65pP9dVKKUFxgb7ekjOSi3J5Uv ebL0Mez3gNRMUPRR65Atlb6UuhmIzy//QWmN11BVYkJuYKYOIeKsIpdxCzTQnTdn 9743FMqj090= =fJ8O -----END PGP SIGNATURE----- Thu Jun 1 11:02:20 UTC 2023 I: Checking whether the package is not for us Thu Jun 1 11:02:20 UTC 2023 I: Starting 1st build on remote node codethink14-arm64.debian.net. Thu Jun 1 11:02:20 UTC 2023 I: Preparing to do remote build '1' on codethink14-arm64.debian.net. Thu Jun 1 11:03:37 UTC 2023 I: Deleting $TMPDIR on codethink14-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed May 31 23:02:24 -12 2023 I: pbuilder-time-stamp: 1685617344 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-variation-perl_1.7.5-3.dsc] I: copying [./libbio-variation-perl_1.7.5.orig.tar.gz] I: copying [./libbio-variation-perl_1.7.5-3.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Dec 2 00:15:28 2021 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-variation-perl_1.7.5-3.dsc: no acceptable signature found dpkg-source: info: extracting libbio-variation-perl in libbio-variation-perl-1.7.5 dpkg-source: info: unpacking libbio-variation-perl_1.7.5.orig.tar.gz dpkg-source: info: unpacking libbio-variation-perl_1.7.5-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/30679/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 ' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='30679' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Izie9V6D/pbuilderrc_Ysb9 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Izie9V6D/b1 --logfile b1/build.log libbio-variation-perl_1.7.5-3.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink14-arm64 4.15.0-212-generic #223-Ubuntu SMP Tue May 23 13:09:17 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 31 22:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/30679/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), perl, libbio-perl-perl, libtest-most-perl, libbio-db-embl-perl, libio-string-perl, libxml-twig-perl, libxml-writer-perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19611 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-most-perl; however: Package libtest-most-perl is not installed. pbuilder-satisfydepends-dummy depends on libbio-db-embl-perl; however: Package libbio-db-embl-perl is not installed. pbuilder-satisfydepends-dummy depends on libio-string-perl; however: Package libio-string-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-twig-perl; however: Package libxml-twig-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-writer-perl; however: Package libxml-writer-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-db-embl-perl{a} libbio-perl-perl{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1{a} libencode-locale-perl{a} libexception-class-perl{a} libexpat1{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libregexp-ipv6-perl{a} libsub-override-perl{a} libsub-uplevel-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml-parser-perl{a} libxml-twig-perl{a} libxml-writer-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libtext-iconv-perl libtie-ixhash-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-xpath-perl libxml-xpathengine-perl lynx perl-tk wget 0 packages upgraded, 76 newly installed, 0 to remove and 0 not upgraded. Need to get 25.2 MB of archives. After unpacking 93.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 netbase all 6.4 [12.8 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 openssl arm64 3.0.8-1 [1373 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 ca-certificates all 20230311 [153 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 24 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 26 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 libdata-stag-perl all 0.14-3 [448 kB] Get: 37 http://deb.debian.org/debian bookworm/main arm64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 libclone-perl arm64 0.46-1 [13.5 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 libhttp-date-perl all 6.05-2 [10.5 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 libregexp-ipv6-perl all 0.03-3 [5212 B] Get: 45 http://deb.debian.org/debian bookworm/main arm64 liburi-perl all 5.17-1 [90.4 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 libhttp-message-perl all 6.44-1 [81.7 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 libfile-listing-perl all 6.15-1 [12.6 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 libhtml-tagset-perl all 3.20-6 [11.7 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 libhtml-parser-perl arm64 3.81-1 [98.6 kB] Get: 50 http://deb.debian.org/debian bookworm/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 51 http://deb.debian.org/debian bookworm/main arm64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get: 52 http://deb.debian.org/debian bookworm/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 53 http://deb.debian.org/debian bookworm/main arm64 perl-openssl-defaults arm64 7+b1 [7924 B] Get: 54 http://deb.debian.org/debian bookworm/main arm64 libnet-ssleay-perl arm64 1.92-2+b1 [308 kB] Get: 55 http://deb.debian.org/debian bookworm/main arm64 libio-socket-ssl-perl all 2.081-2 [219 kB] Get: 56 http://deb.debian.org/debian bookworm/main arm64 libnet-http-perl all 6.22-1 [25.3 kB] Get: 57 http://deb.debian.org/debian bookworm/main arm64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get: 58 http://deb.debian.org/debian bookworm/main arm64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 59 http://deb.debian.org/debian bookworm/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 60 http://deb.debian.org/debian bookworm/main arm64 libwww-perl all 6.68-1 [186 kB] Get: 61 http://deb.debian.org/debian bookworm/main arm64 libbio-db-embl-perl all 1.7.4-4 [7820 B] Get: 62 http://deb.debian.org/debian bookworm/main arm64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get: 63 http://deb.debian.org/debian bookworm/main arm64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get: 64 http://deb.debian.org/debian bookworm/main arm64 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB] Get: 65 http://deb.debian.org/debian bookworm/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get: 66 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get: 67 http://deb.debian.org/debian bookworm/main arm64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 68 http://deb.debian.org/debian bookworm/main arm64 libtest-deep-perl all 1.204-1 [52.9 kB] Get: 69 http://deb.debian.org/debian bookworm/main arm64 libtext-diff-perl all 1.45-2 [27.2 kB] Get: 70 http://deb.debian.org/debian bookworm/main arm64 libtest-differences-perl all 0.69-1 [18.9 kB] Get: 71 http://deb.debian.org/debian bookworm/main arm64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 72 http://deb.debian.org/debian bookworm/main arm64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 73 http://deb.debian.org/debian bookworm/main arm64 libtest-most-perl all 0.38-1 [25.1 kB] Get: 74 http://deb.debian.org/debian bookworm/main arm64 libxml-parser-perl arm64 2.46-4 [198 kB] Get: 75 http://deb.debian.org/debian bookworm/main arm64 libxml-twig-perl all 1:3.52-2 [181 kB] Get: 76 http://deb.debian.org/debian bookworm/main arm64 libxml-writer-perl all 0.900-2 [26.8 kB] Fetched 25.2 MB in 1s (18.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19611 files and directories currently installed.) Preparing to unpack .../00-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.0.8-1_arm64.deb ... Unpacking openssl (3.0.8-1) ... 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Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/libbio-variation-perl-1.7.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-variation-perl_1.7.5-3_source.changes dpkg-buildpackage: info: source package libbio-variation-perl dpkg-buildpackage: info: source version 1.7.5-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/build/libbio-variation-perl-1.7.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/build/libbio-variation-perl-1.7.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::Variation Writing MYMETA.yml and MYMETA.json dh_auto_build make -j8 make[1]: Entering directory '/build/libbio-variation-perl-1.7.5' cp lib/Bio/Variation/IO.pm blib/lib/Bio/Variation/IO.pm cp lib/Bio/Variation/VariantI.pm blib/lib/Bio/Variation/VariantI.pm cp lib/Bio/Variation/DNAMutation.pm blib/lib/Bio/Variation/DNAMutation.pm cp lib/Bio/Variation.pm blib/lib/Bio/Variation.pm cp lib/Bio/Variation/SeqDiff.pm blib/lib/Bio/Variation/SeqDiff.pm cp lib/Bio/Variation/IO/flat.pm blib/lib/Bio/Variation/IO/flat.pm cp lib/Bio/Variation/IO/xml.pm blib/lib/Bio/Variation/IO/xml.pm cp lib/Bio/Variation/RNAChange.pm blib/lib/Bio/Variation/RNAChange.pm cp lib/Bio/Variation/SNP.pm blib/lib/Bio/Variation/SNP.pm cp lib/Bio/Variation/AAReverseMutate.pm blib/lib/Bio/Variation/AAReverseMutate.pm cp lib/Bio/Variation/Allele.pm blib/lib/Bio/Variation/Allele.pm cp lib/Bio/Variation/AAChange.pm blib/lib/Bio/Variation/AAChange.pm cp bin/bp_flanks blib/script/bp_flanks "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_flanks Manifying 1 pod document Manifying 12 pod documents make[1]: Leaving directory '/build/libbio-variation-perl-1.7.5' dh_auto_test make -j8 test TEST_VERBOSE=1 make[1]: Entering directory '/build/libbio-variation-perl-1.7.5' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ........... 1..13 ok 1 - Bio/Variation.pm loaded ok ok 2 - Bio/Variation/AAChange.pm loaded ok ok 3 - Bio/Variation/AAReverseMutate.pm loaded ok ok 4 - Bio/Variation/Allele.pm loaded ok ok 5 - Bio/Variation/DNAMutation.pm loaded ok ok 6 - Bio/Variation/IO.pm loaded ok ok 7 - Bio/Variation/IO/flat.pm loaded ok ok 8 - Bio/Variation/IO/xml.pm loaded ok ok 9 - Bio/Variation/RNAChange.pm loaded ok ok 10 - Bio/Variation/SNP.pm loaded ok ok 11 - Bio/Variation/SeqDiff.pm loaded ok ok 12 - Bio/Variation/VariantI.pm loaded ok ok 13 - bin/bp_flanks compiled ok ok t/AAChange.t ............. 1..27 ok 1 - use Bio::Variation::Allele; ok 2 - use Bio::Variation::AAChange; ok 3 - use Bio::Variation::RNAChange; ok 4 ok 5 - An object of class 'Bio::Variation::AAChange' isa 'Bio::Variation::AAChange' ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 - Trivial name is [V3A] ok 27 ok t/AAReverseMutate.t ...... 1..16 ok 1 - use Bio::Variation::AAReverseMutate; ok 2 ok 3 - An object of class 'Bio::Variation::AAReverseMutate' isa 'Bio::Variation::AAReverseMutate' ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 - An object of class 'Bio::Variation::RNAChange' isa 'Bio::Variation::RNAChange' ok 11 ok 12 ok 13 ok 14 - Codon_ori is |ttc| ok 15 ok 16 ok t/Allele.t ............... 1..14 ok 1 - use Bio::Variation::Allele; ok 2 - An object of class 'Bio::Variation::Allele' isa 'Bio::Variation::Allele' ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok t/author-mojibake.t ...... skipped: these tests are for testing by the author t/author-pod-coverage.t .. skipped: these tests are for testing by the author t/author-pod-syntax.t .... skipped: these tests are for testing by the author t/DNAMutation.t .......... 1..37 ok 1 - use Bio::Variation::DNAMutation; ok 2 - use Bio::Variation::Allele; ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok t/RNAChange.t ............ 1..31 ok 1 - use Bio::Variation::Allele; ok 2 - use Bio::Variation::RNAChange; ok 3 - use Bio::Variation::AAChange; ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 - label ismissense ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 - Codon_ori is |gaa| ok 26 - Codon_mut is |aaa| ok 27 ok 28 ok 29 ok 30 ok 31 ok t/SeqDiff.t .............. 1..44 ok 1 - use Bio::Variation::SeqDiff; ok 2 - use Bio::Variation::DNAMutation; ok 3 - use Bio::Variation::Allele; ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 - An object of class 'Bio::Variation::DNAMutation' isa 'Bio::Variation::VariantI' ok 34 - An object of class 'Bio::Variation::DNAMutation' isa 'Bio::Variation::VariantI' ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 - An object of class 'Bio::PrimarySeq' isa 'Bio::PrimarySeq' ok 43 ok 44 ok t/SNP.t .................. 1..13 ok 1 - use Bio::Variation::SNP; ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok t/Variation_IO.t ......... 1..26 ok 1 - use Bio::Variation::IO; ok 2 ok 3 ok 4 ok 5 ok 6 - test output file compared to input ok 7 ok 8 ok 9 ok 10 ok 11 - test output file compared to input ok 12 ok 13 ok 14 ok 15 ok 16 - test output file compared to input ok 17 ok 18 ok 19 ok 20 ok 21 - test output file compared to input ok 22 ok 23 ok 24 ok 25 ok 26 - test output file compared to input ok All tests successful. Files=12, Tests=221, 12 wallclock secs ( 0.17 usr 0.04 sys + 10.31 cusr 0.86 csys = 11.38 CPU) Result: PASS make[1]: Leaving directory '/build/libbio-variation-perl-1.7.5' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-variation-perl/ make -j8 install DESTDIR=/build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/libbio-variation-perl-1.7.5' Manifying 1 pod document Manifying 12 pod documents Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation.pm Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/AAChange.pm Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/Allele.pm Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/AAReverseMutate.pm Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/SNP.pm Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/RNAChange.pm Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/SeqDiff.pm Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/DNAMutation.pm Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/VariantI.pm Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/IO.pm Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/IO/xml.pm Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/IO/flat.pm Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man1/bp_flanks.1p Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::VariantI.3pm Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::SeqDiff.3pm Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::SNP.3pm Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::RNAChange.3pm Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::IO::xml.3pm Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::IO::flat.3pm Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::IO.3pm Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::DNAMutation.3pm Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::Allele.3pm Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::AAReverseMutate.3pm Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::AAChange.3pm Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation.3pm Installing /build/libbio-variation-perl-1.7.5/debian/libbio-variation-perl/usr/bin/bp_flanks make[1]: Leaving directory '/build/libbio-variation-perl-1.7.5' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-variation-perl' in '../libbio-variation-perl_1.7.5-3_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-variation-perl_1.7.5-3_arm64.buildinfo dpkg-genchanges --build=binary -O../libbio-variation-perl_1.7.5-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/30679 and its subdirectories I: Current time: Wed May 31 23:03:35 -12 2023 I: pbuilder-time-stamp: 1685617415 Thu Jun 1 11:03:38 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink13-arm64.debian.net. Thu Jun 1 11:03:38 UTC 2023 I: Preparing to do remote build '2' on codethink13-arm64.debian.net. Thu Jun 1 11:04:35 UTC 2023 I: Deleting $TMPDIR on codethink13-arm64.debian.net. Thu Jun 1 11:04:36 UTC 2023 I: libbio-variation-perl_1.7.5-3_arm64.changes: Format: 1.8 Date: Thu, 02 Dec 2021 13:10:30 +0100 Source: libbio-variation-perl Binary: libbio-variation-perl Architecture: all Version: 1.7.5-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libbio-variation-perl - BioPerl variation-related functionality Closes: 963866 Changes: libbio-variation-perl (1.7.5-3) unstable; urgency=medium . * Team upload. * Upstream has brocken dependency circle so drop dependency from libbio-db-ncbihelper-perl here as well Closes: #963866 * Standards-Version: 4.6.0 (routine-update) * debhelper-compat 13 (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Repository. * watch file standard 4 (routine-update) Checksums-Sha1: 75cf0091fd433dcfaf72612eb5d3f5d7187c3770 72692 libbio-variation-perl_1.7.5-3_all.deb a9eb8cc78c9be0f5555b2ef7eef242b2eca7baf0 6397 libbio-variation-perl_1.7.5-3_arm64.buildinfo Checksums-Sha256: e944404b452bb3576d420e9b89477b17fbcd12e329cebb8f012e635eada6fcfd 72692 libbio-variation-perl_1.7.5-3_all.deb 64621df943ff7a1e16208c82eb0b6ae97741230106664c851b02eecf7a8e2d05 6397 libbio-variation-perl_1.7.5-3_arm64.buildinfo Files: ba23b6285e5a4f5cb2dbfaf6b144e61f 72692 perl optional libbio-variation-perl_1.7.5-3_all.deb cd4332400627b7f95d5dd28d7e255664 6397 perl optional libbio-variation-perl_1.7.5-3_arm64.buildinfo Thu Jun 1 11:04:37 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Izie9V6D/libbio-variation-perl_1.7.5-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Izie9V6D/libbio-variation-perl_1.7.5-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Izie9V6D/libbio-variation-perl_1.7.5-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Izie9V6D/b1/libbio-variation-perl_1.7.5-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Izie9V6D/b2/libbio-variation-perl_1.7.5-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.324s) 0.324s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.017s) 0.016s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Thu Jun 1 11:04:38 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Thu Jun 1 11:04:38 UTC 2023 I: libbio-variation-perl from bookworm built successfully and reproducibly on arm64. Thu Jun 1 11:04:39 UTC 2023 I: Submitting .buildinfo files to external archives: Thu Jun 1 11:04:39 UTC 2023 I: Submitting 8.0K b1/libbio-variation-perl_1.7.5-3_arm64.buildinfo.asc Thu Jun 1 11:04:40 UTC 2023 I: Submitting 8.0K b2/libbio-variation-perl_1.7.5-3_arm64.buildinfo.asc Thu Jun 1 11:04:40 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jun 1 11:04:40 UTC 2023 I: Done submitting .buildinfo files. Thu Jun 1 11:04:40 UTC 2023 I: Removing signed libbio-variation-perl_1.7.5-3_arm64.buildinfo.asc files: removed './b1/libbio-variation-perl_1.7.5-3_arm64.buildinfo.asc' removed './b2/libbio-variation-perl_1.7.5-3_arm64.buildinfo.asc'