Thu Jun 1 20:18:27 UTC 2023 I: starting to build gemmi/bookworm/arm64 on jenkins on '2023-06-01 20:18' Thu Jun 1 20:18:27 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_20/97/console.log Thu Jun 1 20:18:27 UTC 2023 I: Downloading source for bookworm/gemmi=0.5.7+ds-2 --2023-06-01 20:18:28-- http://cdn-fastly.deb.debian.org/debian/pool/main/g/gemmi/gemmi_0.5.7%2bds-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2280 (2.2K) [text/prs.lines.tag] Saving to: ‘gemmi_0.5.7+ds-2.dsc’ 0K .. 100% 121M=0s 2023-06-01 20:18:28 (121 MB/s) - ‘gemmi_0.5.7+ds-2.dsc’ saved [2280/2280] Thu Jun 1 20:18:28 UTC 2023 I: gemmi_0.5.7+ds-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: gemmi Binary: gemmi, gemmi-dev, python3-gemmi Architecture: any Version: 0.5.7+ds-2 Maintainer: Debichem Team Uploaders: Andrius Merkys , Homepage: https://project-gemmi.github.io Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/debichem-team/gemmi Vcs-Git: https://salsa.debian.org/debichem-team/gemmi.git Testsuite: autopkgtest Testsuite-Triggers: python3-numpy, python3-pytest Build-Depends: cmake, debhelper-compat (= 13), dh-python, doctest-dev, help2man, libstb-dev, python3-dev, python3-numpy , python3-pybind11 (>= 2.6.0), python3-pytest , tao-pegtl-dev, zlib1g-dev Package-List: gemmi deb science optional arch=any gemmi-dev deb libdevel optional arch=any python3-gemmi deb python optional arch=any Checksums-Sha1: 66676f60f8b5318a520253c4e3f186283d6dbb17 1203364 gemmi_0.5.7+ds.orig.tar.xz 45b60c96bc4ff552d8bf14bf959fa458ed13ec06 6100 gemmi_0.5.7+ds-2.debian.tar.xz Checksums-Sha256: 72fcf69036b66df26811e1c700ac0644611d014871bc7cd8e8b677e1c338c526 1203364 gemmi_0.5.7+ds.orig.tar.xz 3dc60eb2e92f4833f8f1c8c538cc42d8033aac6d087a3da3d8a5875a8ae184c3 6100 gemmi_0.5.7+ds-2.debian.tar.xz Files: 0bc7480248682d4c99586cdf7ca03a2b 1203364 gemmi_0.5.7+ds.orig.tar.xz 8fff785fb62e932d93d9fc2e610116a7 6100 gemmi_0.5.7+ds-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmM777QSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHWngP/1P7+4QR2r3xxE/fMUxYhOkYTWGDGfdi YyaGHsgfZYvcVgluHtSceMD4D5ZS+Pd31ob0tT7OyQR4TsPbGdnBWegvgaC2MUvY uDBgRrkFGYaUfTunSoedXP5maM3/gNWwGylGokj3cI93w/VBF4Q2ZtWCyaNN55Rs 4MieZ3VcRA/AUB3hkdfe4/chVW5Pc2ed84q5pKps9ysHsgVsNap574kHizsG0/Rr aU2YwjPdncHgllpl42kMeKEoa5XroFvud3b53fFPhdBmCrodqxSq1W736BGGNrqx VmLlnnllvCQ1PBJQxDyg2H0ekwPf4nFxDFX+jl3InWPiwMHQkgdg2cBywIUNz/1o QsyfbR0HUPfom6bkcBLhIXrRzmx2VCjmgB9fVzrOp7NZWShnonkMErkcJ+XxdUzf LJ5CP+yGTdHbc92htab1eV089O909jNfDDsGzFzdpghKI9/W95oTtItxntwpk0u4 ST2KCl/ATsgem86xcoFrRdVtL4lW9KmSVzwtlLr7aVVccSBnvrP2KANqgrhkVKr1 2FP/XVuo4HIpm/+//6ZIgmmYrmNNmnlpnmraO72jBIbL9vWg2K3E4cE5UHVH0Fo8 IAuFqlf7kYW951nu+LOdzC7a7EwQ1ze0Fa/APcThksOWF09DN1mCvBuwXc27OpaI EeOTop3qQGtK =Vfn3 -----END PGP SIGNATURE----- Thu Jun 1 20:18:28 UTC 2023 I: Checking whether the package is not for us Thu Jun 1 20:18:28 UTC 2023 I: Starting 1st build on remote node codethink13-arm64.debian.net. Thu Jun 1 20:18:28 UTC 2023 I: Preparing to do remote build '1' on codethink13-arm64.debian.net. Thu Jun 1 21:22:07 UTC 2023 I: Deleting $TMPDIR on codethink13-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jul 3 14:41:33 -12 2024 I: pbuilder-time-stamp: 1720060893 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] tar: ./usr/share/doc/adduser/examples/adduser.local.conf.examples/skel: time stamp 2025-08-04 08:27:37 is 34278354.94881786 s in the future tar: ./usr/share/doc/adduser/examples/adduser.local.conf.examples/skel.other: time stamp 2025-08-04 08:27:37 is 34278354.94848852 s in the future tar: ./usr/share/doc/adduser/examples/adduser.local.conf.examples: time stamp 2025-08-04 08:27:37 is 34278354.94844658 s in the future tar: ./usr/share/doc/adduser/examples: time stamp 2025-08-04 08:27:37 is 34278354.94841808 s in the future tar: ./usr/share/doc/adduser: time stamp 2025-08-04 08:27:37 is 34278354.94839186 s in the future tar: ./usr/share/locale/ca/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34278354.83903556 s in the future tar: ./usr/share/locale/cs/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34278354.812803 s in the future tar: ./usr/share/locale/da/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34278354.78561448 s in the future tar: ./usr/share/locale/de/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34278354.75582284 s in the future tar: ./usr/share/locale/es/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34278354.6967768 s in the future tar: ./usr/share/locale/eu/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34278354.68884576 s in the future tar: ./usr/share/locale/fr/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34278354.60714524 s in the future tar: ./usr/share/locale/gl/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34278354.5965495 s in the future tar: ./usr/share/locale/hu/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34278354.57946558 s in the future tar: ./usr/share/locale/it/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34278354.5550592 s in the future tar: ./usr/share/locale/ja/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34278354.52544798 s in the future tar: ./usr/share/locale/ko/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34278354.50240004 s in the future tar: ./usr/share/locale/nb/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34278354.47382844 s in the future tar: ./usr/share/locale/nl/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34278354.44120202 s in the future tar: ./usr/share/locale/pl/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34278354.4131208 s in the future tar: ./usr/share/locale/pt/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34278354.37879818 s in the future tar: ./usr/share/locale/pt_BR/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34278354.3539866 s in the future tar: ./usr/share/locale/ru/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34278354.27931646 s in the future tar: ./usr/share/locale/sk/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34278354.26451394 s in the future tar: ./usr/share/locale/sv/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34278354.20983862 s in the future tar: ./usr/share/locale/uk/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34278354.11911432 s in the future tar: ./usr/share/locale/vi/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34278354.08771066 s in the future tar: ./usr/share/locale/zh_CN/LC_MESSAGES: time stamp 2025-08-04 08:27:37 is 34278354.0584547 s in the future tar: ./usr/share/man/de/man5: time stamp 2025-08-04 08:27:37 is 34278353.87258078 s in the future tar: ./usr/share/man/fr/man5: time stamp 2025-08-04 08:27:37 is 34278353.84792862 s in the future tar: ./usr/share/man/man5: time stamp 2025-08-04 08:27:37 is 34278353.77204492 s in the future tar: ./usr/share/man/nl/man5: time stamp 2025-08-04 08:27:37 is 34278353.73703432 s in the future tar: ./usr/share/man/nl/man8: time stamp 2025-08-04 08:27:37 is 34278353.7343221 s in the future tar: ./usr/share/man/pt/man5: time stamp 2025-08-04 08:27:37 is 34278353.7186726 s in the future tar: ./usr/share/man/pt/man8: time stamp 2025-08-04 08:27:37 is 34278353.71465018 s in the future tar: ./usr/share/perl5/Debian: time stamp 2025-08-04 08:27:37 is 34278353.63886348 s in the future tar: ./var/lib/dpkg/info/adduser.list: time stamp 2025-08-04 08:27:37 is 34278350.27996564 s in the future tar: ./usr/sbin: time stamp 2025-08-04 08:27:37 is 34278349.98408252 s in the future tar: ./usr/share/man/man8: time stamp 2025-08-04 08:27:37 is 34278349.98337676 s in the future tar: ./usr/share/man/fr/man8: time stamp 2025-08-04 08:27:37 is 34278349.98320478 s in the future tar: ./usr/share/man/de/man8: time stamp 2025-08-04 08:27:37 is 34278349.98309032 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [gemmi_0.5.7+ds-2.dsc] I: copying [./gemmi_0.5.7+ds.orig.tar.xz] I: copying [./gemmi_0.5.7+ds-2.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Oct 3 20:32:52 2022 -12 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./gemmi_0.5.7+ds-2.dsc: no acceptable signature found dpkg-source: info: extracting gemmi in gemmi-0.5.7+ds dpkg-source: info: unpacking gemmi_0.5.7+ds.orig.tar.xz dpkg-source: info: unpacking gemmi_0.5.7+ds-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-system-tao-pegtl.patch dpkg-source: info: applying use-system-doctest.patch dpkg-source: info: applying tao-pegtl-3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/27929/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 ' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='27929' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.FO897zsf/pbuilderrc_lSN0 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.FO897zsf/b1 --logfile b1/build.log gemmi_0.5.7+ds-2.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink13-arm64 4.15.0-212-generic #223-Ubuntu SMP Tue May 23 13:09:17 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 24 04:48 /bin -> usr/bin I: user script /srv/workspace/pbuilder/27929/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake, debhelper-compat (= 13), dh-python, doctest-dev, help2man, libstb-dev, python3-dev, python3-numpy, python3-pybind11 (>= 2.6.0), python3-pytest, tao-pegtl-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19611 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on doctest-dev; however: Package doctest-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on libstb-dev; however: Package libstb-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pybind11 (>= 2.6.0); however: Package python3-pybind11 is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on tao-pegtl-dev; however: Package tao-pegtl-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} doctest-dev{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libblas3{a} libbrotli1{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp25{a} liblapack3{a} libldap-2.5-0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libstb-dev{a} libstb0{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} procps{a} pybind11-dev{a} python3{a} python3-attr{a} python3-dev{a} python3-distutils{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pybind11{a} python3-pytest{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tao-pegtl-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libeigen3-dev libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix python3-pygments wget 0 packages upgraded, 91 newly installed, 0 to remove and 0 not upgraded. Need to get 53.3 MB of archives. After unpacking 226 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 liblocale-gettext-perl arm64 1.07-5 [15.1 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-minimal arm64 3.11.2-6 [806 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 python3.11-minimal arm64 3.11.2-6 [1858 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 python3-minimal arm64 3.11.2-1+b1 [26.3 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 media-types all 10.0.0 [26.1 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-stdlib arm64 3.11.2-6 [1747 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 python3.11 arm64 3.11.2-6 [572 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 libpython3-stdlib arm64 3.11.2-1+b1 [9296 B] Get: 12 http://deb.debian.org/debian bookworm/main arm64 python3 arm64 3.11.2-1+b1 [26.3 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 libproc2-0 arm64 2:4.0.2-3 [60.1 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 procps arm64 2:4.0.2-3 [698 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 libarchive13 arm64 3.6.2-1 [316 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-10 [20.8 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 libsasl2-2 arm64 2.1.28+dfsg-10 [58.0 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 libldap-2.5-0 arm64 2.5.13+dfsg-5 [171 kB] Get: 37 http://deb.debian.org/debian bookworm/main arm64 libnghttp2-14 arm64 1.52.0-1 [67.9 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 libpsl5 arm64 0.21.2-1 [58.6 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 libssh2-1 arm64 1.10.0-3+b1 [172 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 libcurl4 arm64 7.88.1-10 [362 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 libjsoncpp25 arm64 1.9.5-4 [72.3 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 librhash0 arm64 1.4.3-3 [131 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 libuv1 arm64 1.44.2-1 [133 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 cmake-data all 3.25.1-1 [2026 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 cmake arm64 3.25.1-1 [6806 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 50 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 51 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 52 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 53 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 54 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 55 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 56 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 57 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 58 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 59 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 60 http://deb.debian.org/debian bookworm/main arm64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 61 http://deb.debian.org/debian bookworm/main arm64 python3-distutils all 3.11.2-3 [131 kB] Get: 62 http://deb.debian.org/debian bookworm/main arm64 dh-python all 5.20230130 [104 kB] Get: 63 http://deb.debian.org/debian bookworm/main arm64 doctest-dev all 2.4.9~ds-1 [211 kB] Get: 64 http://deb.debian.org/debian bookworm/main arm64 help2man arm64 1.49.3 [198 kB] Get: 65 http://deb.debian.org/debian bookworm/main arm64 libblas3 arm64 3.11.0-2 [91.4 kB] Get: 66 http://deb.debian.org/debian bookworm/main arm64 libexpat1-dev arm64 2.5.0-1 [135 kB] Get: 67 http://deb.debian.org/debian bookworm/main arm64 libgfortran5 arm64 12.2.0-14 [340 kB] Get: 68 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 69 http://deb.debian.org/debian bookworm/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 70 http://deb.debian.org/debian bookworm/main arm64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 71 http://deb.debian.org/debian bookworm/main arm64 liblapack3 arm64 3.11.0-2 [1664 kB] Get: 72 http://deb.debian.org/debian bookworm/main arm64 libpython3.11 arm64 3.11.2-6 [1841 kB] Get: 73 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] Get: 74 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-dev arm64 3.11.2-6 [4395 kB] Get: 75 http://deb.debian.org/debian bookworm/main arm64 libpython3-dev arm64 3.11.2-1+b1 [9564 B] Get: 76 http://deb.debian.org/debian bookworm/main arm64 libstb0 arm64 0.0~git20220908.8b5f1f3+ds-1 [194 kB] Get: 77 http://deb.debian.org/debian bookworm/main arm64 libstb-dev arm64 0.0~git20220908.8b5f1f3+ds-1 [576 kB] Get: 78 http://deb.debian.org/debian bookworm/main arm64 pybind11-dev all 2.10.3-1 [186 kB] Get: 79 http://deb.debian.org/debian bookworm/main arm64 python3-attr all 22.2.0-1 [65.4 kB] Get: 80 http://deb.debian.org/debian bookworm/main arm64 python3.11-dev arm64 3.11.2-6 [617 kB] Get: 81 http://deb.debian.org/debian bookworm/main arm64 python3-dev arm64 3.11.2-1+b1 [26.2 kB] Get: 82 http://deb.debian.org/debian bookworm/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 83 http://deb.debian.org/debian bookworm/main arm64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 84 http://deb.debian.org/debian bookworm/main arm64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 85 http://deb.debian.org/debian bookworm/main arm64 python3-numpy arm64 1:1.24.2-1 [4751 kB] Get: 86 http://deb.debian.org/debian bookworm/main arm64 python3-packaging all 23.0-1 [32.5 kB] Get: 87 http://deb.debian.org/debian bookworm/main arm64 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 88 http://deb.debian.org/debian bookworm/main arm64 python3-py all 1.11.0-1 [89.2 kB] Get: 89 http://deb.debian.org/debian bookworm/main arm64 python3-pybind11 all 2.10.3-1 [199 kB] Get: 90 http://deb.debian.org/debian bookworm/main arm64 python3-pytest all 7.2.1-2 [236 kB] Get: 91 http://deb.debian.org/debian bookworm/main arm64 tao-pegtl-dev all 3.2.7-1 [69.4 kB] Fetched 53.3 MB in 3s (15.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19611 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-5_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package libpython3.11-minimal:arm64. Preparing to unpack .../libpython3.11-minimal_3.11.2-6_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.2-6) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.5.0-1_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_arm64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:arm64 (3.11.2-6) ... Setting up libexpat1:arm64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19941 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_arm64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../3-libreadline8_8.2-1.3_arm64.deb ... Unpacking libreadline8:arm64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:arm64. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_arm64.deb ... Unpacking libpython3.11-stdlib:arm64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_arm64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20375 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_arm64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../01-libproc2-0_2%3a4.0.2-3_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.2-3_arm64.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../05-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../08-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../11-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../18-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../19-libxml2_2.9.14+dfsg-1.2_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package libarchive13:arm64. Preparing to unpack .../20-libarchive13_3.6.2-1_arm64.deb ... Unpacking libarchive13:arm64 (3.6.2-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../21-libbrotli1_1.0.9-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b6) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../22-libsasl2-modules-db_2.1.28+dfsg-10_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../23-libsasl2-2_2.1.28+dfsg-10_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:arm64. Preparing to unpack .../24-libldap-2.5-0_2.5.13+dfsg-5_arm64.deb ... Unpacking libldap-2.5-0:arm64 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../25-libnghttp2-14_1.52.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.52.0-1) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../26-libpsl5_0.21.2-1_arm64.deb ... Unpacking libpsl5:arm64 (0.21.2-1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../27-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:arm64. Preparing to unpack .../28-libssh2-1_1.10.0-3+b1_arm64.deb ... Unpacking libssh2-1:arm64 (1.10.0-3+b1) ... Selecting previously unselected package libcurl4:arm64. Preparing to unpack .../29-libcurl4_7.88.1-10_arm64.deb ... Unpacking libcurl4:arm64 (7.88.1-10) ... Selecting previously unselected package libjsoncpp25:arm64. Preparing to unpack .../30-libjsoncpp25_1.9.5-4_arm64.deb ... Unpacking libjsoncpp25:arm64 (1.9.5-4) ... Selecting previously unselected package librhash0:arm64. Preparing to unpack .../31-librhash0_1.4.3-3_arm64.deb ... Unpacking librhash0:arm64 (1.4.3-3) ... Selecting previously unselected package libuv1:arm64. Preparing to unpack .../32-libuv1_1.44.2-1_arm64.deb ... Unpacking libuv1:arm64 (1.44.2-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../33-cmake-data_3.25.1-1_all.deb ... Unpacking cmake-data (3.25.1-1) ... Selecting previously unselected package cmake. Preparing to unpack .../34-cmake_3.25.1-1_arm64.deb ... Unpacking cmake (3.25.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../35-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../36-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../37-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../38-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../39-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../40-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../41-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../42-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../43-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. Preparing to unpack .../44-gettext_0.21-12_arm64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../45-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../46-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../47-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../48-python3-lib2to3_3.11.2-3_all.deb ... Unpacking python3-lib2to3 (3.11.2-3) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../49-python3-distutils_3.11.2-3_all.deb ... Unpacking python3-distutils (3.11.2-3) ... Selecting previously unselected package dh-python. Preparing to unpack .../50-dh-python_5.20230130_all.deb ... Unpacking dh-python (5.20230130) ... Selecting previously unselected package doctest-dev. Preparing to unpack .../51-doctest-dev_2.4.9~ds-1_all.deb ... Unpacking doctest-dev (2.4.9~ds-1) ... Selecting previously unselected package help2man. Preparing to unpack .../52-help2man_1.49.3_arm64.deb ... Unpacking help2man (1.49.3) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../53-libblas3_3.11.0-2_arm64.deb ... Unpacking libblas3:arm64 (3.11.0-2) ... Selecting previously unselected package libexpat1-dev:arm64. Preparing to unpack .../54-libexpat1-dev_2.5.0-1_arm64.deb ... Unpacking libexpat1-dev:arm64 (2.5.0-1) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../55-libgfortran5_12.2.0-14_arm64.deb ... Unpacking libgfortran5:arm64 (12.2.0-14) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../56-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../57-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../58-libjs-sphinxdoc_5.3.0-4_all.deb ... Unpacking libjs-sphinxdoc (5.3.0-4) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../59-liblapack3_3.11.0-2_arm64.deb ... Unpacking liblapack3:arm64 (3.11.0-2) ... Selecting previously unselected package libpython3.11:arm64. Preparing to unpack .../60-libpython3.11_3.11.2-6_arm64.deb ... Unpacking libpython3.11:arm64 (3.11.2-6) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../61-zlib1g-dev_1%3a1.2.13.dfsg-1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.2.13.dfsg-1) ... Selecting previously unselected package libpython3.11-dev:arm64. Preparing to unpack .../62-libpython3.11-dev_3.11.2-6_arm64.deb ... Unpacking libpython3.11-dev:arm64 (3.11.2-6) ... Selecting previously unselected package libpython3-dev:arm64. Preparing to unpack .../63-libpython3-dev_3.11.2-1+b1_arm64.deb ... Unpacking libpython3-dev:arm64 (3.11.2-1+b1) ... Selecting previously unselected package libstb0:arm64. Preparing to unpack .../64-libstb0_0.0~git20220908.8b5f1f3+ds-1_arm64.deb ... Unpacking libstb0:arm64 (0.0~git20220908.8b5f1f3+ds-1) ... Selecting previously unselected package libstb-dev:arm64. Preparing to unpack .../65-libstb-dev_0.0~git20220908.8b5f1f3+ds-1_arm64.deb ... Unpacking libstb-dev:arm64 (0.0~git20220908.8b5f1f3+ds-1) ... Selecting previously unselected package pybind11-dev. Preparing to unpack .../66-pybind11-dev_2.10.3-1_all.deb ... Unpacking pybind11-dev (2.10.3-1) ... Selecting previously unselected package python3-attr. Preparing to unpack .../67-python3-attr_22.2.0-1_all.deb ... Unpacking python3-attr (22.2.0-1) ... Selecting previously unselected package python3.11-dev. Preparing to unpack .../68-python3.11-dev_3.11.2-6_arm64.deb ... Unpacking python3.11-dev (3.11.2-6) ... Selecting previously unselected package python3-dev. Preparing to unpack .../69-python3-dev_3.11.2-1+b1_arm64.deb ... Unpacking python3-dev (3.11.2-1+b1) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../70-python3-iniconfig_1.1.1-2_all.deb ... Unpacking python3-iniconfig (1.1.1-2) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../71-python3-more-itertools_8.10.0-2_all.deb ... Unpacking python3-more-itertools (8.10.0-2) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../72-python3-pkg-resources_66.1.1-1_all.deb ... Unpacking python3-pkg-resources (66.1.1-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../73-python3-numpy_1%3a1.24.2-1_arm64.deb ... Unpacking python3-numpy (1:1.24.2-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../74-python3-packaging_23.0-1_all.deb ... Unpacking python3-packaging (23.0-1) ... 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Setting up libpython3.11-stdlib:arm64 (3.11.2-6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up cmake (3.25.1-1) ... Setting up libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libpython3.11:arm64 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-packaging (23.0-1) ... Setting up libpython3.11-dev:arm64 (3.11.2-6) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-pybind11 (2.10.3-1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (22.2.0-1) ... Setting up libpython3-dev:arm64 (3.11.2-1+b1) ... Setting up python3-py (1.11.0-1) ... Setting up python3.11-dev (3.11.2-6) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/gemmi-0.5.7+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gemmi_0.5.7+ds-2_source.changes dpkg-buildpackage: info: source package gemmi dpkg-buildpackage: info: source version 0.5.7+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem cmake --with python3 dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem cmake --with python3 dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/gemmi-0.5.7+ds' dh_auto_configure -- -DUSE_PYTHON=1 -DINSTALL_EGG_INFO=OFF cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DUSE_PYTHON=1 -DINSTALL_EGG_INFO=OFF .. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Skipping Fortran bindings. Add -D USE_FORTRAN=1 to build them. -- Compiling with C++ standard: 17 -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.2.13") -- Benchmarks not configured. -- The python module will be built. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.11.2", minimum required is "3.6") -- Found PythonLibs: /usr/lib/aarch64-linux-gnu/libpython3.11.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.10.3") -- Found pybind11 2.10.3: /usr/include;/usr/include/python3.11 -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu make[1]: Leaving directory 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CMakeFiles/py.dir/python/gemmi.cpp.o -MF CMakeFiles/py.dir/python/gemmi.cpp.o.d -o CMakeFiles/py.dir/python/gemmi.cpp.o -c /build/gemmi-0.5.7+ds/python/gemmi.cpp [ 12%] Building CXX object CMakeFiles/py.dir/python/ccp4.cpp.o [ 14%] Building CXX object CMakeFiles/mapcoef.dir/src/mapcoef.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/ccp4.cpp.o -MF CMakeFiles/py.dir/python/ccp4.cpp.o.d -o CMakeFiles/py.dir/python/ccp4.cpp.o -c /build/gemmi-0.5.7+ds/python/ccp4.cpp /usr/bin/c++ -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/mapcoef.dir/src/mapcoef.cpp.o -MF CMakeFiles/mapcoef.dir/src/mapcoef.cpp.o.d -o CMakeFiles/mapcoef.dir/src/mapcoef.cpp.o -c /build/gemmi-0.5.7+ds/src/mapcoef.cpp In file included from /build/gemmi-0.5.7+ds/src/output.cpp:6: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ In file included from /build/gemmi-0.5.7+ds/include/gemmi/select.hpp:16, from /build/gemmi-0.5.7+ds/python/mol.cpp:8: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. 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[-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. 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CMakeFiles/py.dir/python/meta.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/meta.cpp.o -MF CMakeFiles/py.dir/python/meta.cpp.o.d -o CMakeFiles/py.dir/python/meta.cpp.o -c /build/gemmi-0.5.7+ds/python/meta.cpp [ 26%] Building CXX object CMakeFiles/py.dir/python/monlib.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/monlib.cpp.o -MF 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-ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/read.cpp.o -MF CMakeFiles/py.dir/python/read.cpp.o.d -o CMakeFiles/py.dir/python/read.cpp.o -c /build/gemmi-0.5.7+ds/python/read.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/smcif.hpp:12, from /build/gemmi-0.5.7+ds/python/read.cpp:7: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. 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warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ In file included from /build/gemmi-0.5.7+ds/include/gemmi/it92.hpp:16, from /build/gemmi-0.5.7+ds/python/sf.cpp:6: /build/gemmi-0.5.7+ds/include/gemmi/formfact.hpp: In instantiation of 'std::pair<_ForwardIterator, _ForwardIterator> gemmi::ExpSum::calculate_with_derivative(Real) const [with int N = 5; Real = double]': /build/gemmi-0.5.7+ds/include/gemmi/dencalc.hpp:19:54: required from 'double gemmi::determine_cutoff_radius(double, const PrecalExpSum&, double) [with PrecalExpSum = ExpSum<5, double>]' /build/gemmi-0.5.7+ds/include/gemmi/dencalc.hpp:130:35: required from 'double gemmi::DensityCalculator::estimate_radius(const gemmi::ExpSum&, double) const [with int N = 5; Table = gemmi::IT92; Real = float; typename Table::Coef::coef_type = double; typename Table::Coef = gemmi::GaussianCoef<4, 1, double>]' /build/gemmi-0.5.7+ds/python/sf.cpp:63:36: required from 'void add_dencalc(pybind11::module&, const char*) [with Table = gemmi::IT92; pybind11::module = pybind11::module_]' /build/gemmi-0.5.7+ds/python/sf.cpp:86:20: required from here /build/gemmi-0.5.7+ds/include/gemmi/formfact.hpp:28:24: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 28 | std::pair calculate_with_derivative(Real r) const { | ^~~~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object CMakeFiles/py.dir/python/write.cpp.o /usr/bin/c++ -Dpy_EXPORTS -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -isystem /usr/include/python3.11 -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++17 -MD -MT CMakeFiles/py.dir/python/write.cpp.o -MF CMakeFiles/py.dir/python/write.cpp.o.d -o CMakeFiles/py.dir/python/write.cpp.o -c /build/gemmi-0.5.7+ds/python/write.cpp In file included from /build/gemmi-0.5.7+ds/python/write.cpp:4: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. 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It may not work." | ^~~~~~~ [ 48%] Building CXX object CMakeFiles/program.dir/src/cif2mtz.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/cif2mtz.cpp.o -MF CMakeFiles/program.dir/src/cif2mtz.cpp.o.d -o CMakeFiles/program.dir/src/cif2mtz.cpp.o -c /build/gemmi-0.5.7+ds/src/cif2mtz.cpp [ 51%] Building CXX object CMakeFiles/program.dir/src/cif2json.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/cif2json.cpp.o -MF CMakeFiles/program.dir/src/cif2json.cpp.o.d -o CMakeFiles/program.dir/src/cif2json.cpp.o -c /build/gemmi-0.5.7+ds/src/cif2json.cpp [ 51%] Building CXX object CMakeFiles/program.dir/src/contact.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/contact.cpp.o -MF CMakeFiles/program.dir/src/contact.cpp.o.d -o CMakeFiles/program.dir/src/contact.cpp.o -c /build/gemmi-0.5.7+ds/src/contact.cpp [ 53%] Building CXX object CMakeFiles/program.dir/src/contents.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/contents.cpp.o -MF CMakeFiles/program.dir/src/contents.cpp.o.d -o CMakeFiles/program.dir/src/contents.cpp.o -c /build/gemmi-0.5.7+ds/src/contents.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/select.hpp:16, from /build/gemmi-0.5.7+ds/src/contents.cpp:13: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ [ 56%] Building CXX object CMakeFiles/program.dir/src/convert.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/convert.cpp.o -MF CMakeFiles/program.dir/src/convert.cpp.o.d -o CMakeFiles/program.dir/src/convert.cpp.o -c /build/gemmi-0.5.7+ds/src/convert.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/select.hpp:16, from /build/gemmi-0.5.7+ds/src/convert.cpp:16: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ [ 56%] Building CXX object CMakeFiles/program.dir/src/fprime.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/fprime.cpp.o -MF CMakeFiles/program.dir/src/fprime.cpp.o.d -o CMakeFiles/program.dir/src/fprime.cpp.o -c /build/gemmi-0.5.7+ds/src/fprime.cpp [ 58%] Building CXX object CMakeFiles/program.dir/src/grep.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/grep.cpp.o -MF CMakeFiles/program.dir/src/grep.cpp.o.d -o CMakeFiles/program.dir/src/grep.cpp.o -c /build/gemmi-0.5.7+ds/src/grep.cpp [ 60%] Building CXX object CMakeFiles/program.dir/src/h.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/h.cpp.o -MF CMakeFiles/program.dir/src/h.cpp.o.d -o CMakeFiles/program.dir/src/h.cpp.o -c /build/gemmi-0.5.7+ds/src/h.cpp [ 63%] Building CXX object CMakeFiles/program.dir/src/json2cif.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/json2cif.cpp.o -MF CMakeFiles/program.dir/src/json2cif.cpp.o.d -o CMakeFiles/program.dir/src/json2cif.cpp.o -c /build/gemmi-0.5.7+ds/src/json2cif.cpp [ 63%] Building CXX object CMakeFiles/program.dir/src/main.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/main.cpp.o -MF CMakeFiles/program.dir/src/main.cpp.o.d -o CMakeFiles/program.dir/src/main.cpp.o -c /build/gemmi-0.5.7+ds/src/main.cpp [ 65%] Building CXX object CMakeFiles/program.dir/src/map.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/map.cpp.o -MF CMakeFiles/program.dir/src/map.cpp.o.d -o CMakeFiles/program.dir/src/map.cpp.o -c /build/gemmi-0.5.7+ds/src/map.cpp [ 68%] Building CXX object CMakeFiles/program.dir/src/map2sf.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/map2sf.cpp.o -MF CMakeFiles/program.dir/src/map2sf.cpp.o.d -o CMakeFiles/program.dir/src/map2sf.cpp.o -c /build/gemmi-0.5.7+ds/src/map2sf.cpp [ 68%] Building CXX object CMakeFiles/program.dir/src/mask.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/mask.cpp.o -MF CMakeFiles/program.dir/src/mask.cpp.o.d -o CMakeFiles/program.dir/src/mask.cpp.o -c /build/gemmi-0.5.7+ds/src/mask.cpp [ 70%] Building CXX object CMakeFiles/program.dir/src/merge.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/merge.cpp.o -MF CMakeFiles/program.dir/src/merge.cpp.o.d -o CMakeFiles/program.dir/src/merge.cpp.o -c /build/gemmi-0.5.7+ds/src/merge.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/mtz2cif.hpp:24, from /build/gemmi-0.5.7+ds/src/merge.cpp:14: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ [ 73%] Linking CXX shared module gemmi.cpython-311-aarch64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/py.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -flto -Wl,-z,relro -shared -o gemmi.cpython-311-aarch64-linux-gnu.so CMakeFiles/py.dir/python/mol.cpp.o CMakeFiles/py.dir/python/gemmi.cpp.o CMakeFiles/py.dir/python/align.cpp.o CMakeFiles/py.dir/python/ccp4.cpp.o CMakeFiles/py.dir/python/chemcomp.cpp.o CMakeFiles/py.dir/python/cif.cpp.o CMakeFiles/py.dir/python/custom.cpp.o CMakeFiles/py.dir/python/elem.cpp.o CMakeFiles/py.dir/python/grid.cpp.o CMakeFiles/py.dir/python/hkl.cpp.o CMakeFiles/py.dir/python/meta.cpp.o CMakeFiles/py.dir/python/monlib.cpp.o CMakeFiles/py.dir/python/mtz.cpp.o CMakeFiles/py.dir/python/read.cpp.o CMakeFiles/py.dir/python/recgrid.cpp.o CMakeFiles/py.dir/python/scaling.cpp.o CMakeFiles/py.dir/python/search.cpp.o CMakeFiles/py.dir/python/sf.cpp.o CMakeFiles/py.dir/python/sym.cpp.o CMakeFiles/py.dir/python/topo.cpp.o CMakeFiles/py.dir/python/unitcell.cpp.o CMakeFiles/py.dir/python/write.cpp.o /usr/lib/aarch64-linux-gnu/libz.so [ 75%] Building CXX object CMakeFiles/program.dir/src/mondiff.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/mondiff.cpp.o -MF CMakeFiles/program.dir/src/mondiff.cpp.o.d -o CMakeFiles/program.dir/src/mondiff.cpp.o -c /build/gemmi-0.5.7+ds/src/mondiff.cpp [ 78%] Building CXX object CMakeFiles/program.dir/src/mtz.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -Wno-psabi -MD -MT CMakeFiles/program.dir/src/mtz.cpp.o -MF CMakeFiles/program.dir/src/mtz.cpp.o.d -o CMakeFiles/program.dir/src/mtz.cpp.o -c /build/gemmi-0.5.7+ds/src/mtz.cpp [ 78%] Building CXX object CMakeFiles/program.dir/src/mtz2cif.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/mtz2cif.cpp.o -MF CMakeFiles/program.dir/src/mtz2cif.cpp.o.d -o CMakeFiles/program.dir/src/mtz2cif.cpp.o -c /build/gemmi-0.5.7+ds/src/mtz2cif.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/mtz2cif.hpp:24, from /build/gemmi-0.5.7+ds/src/mtz2cif.cpp:8: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ lto-wrapper: warning: using serial compilation of 110 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information [ 80%] Building CXX object CMakeFiles/program.dir/src/prep.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/prep.cpp.o -MF CMakeFiles/program.dir/src/prep.cpp.o.d -o CMakeFiles/program.dir/src/prep.cpp.o -c /build/gemmi-0.5.7+ds/src/prep.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/crd.hpp:13, from /build/gemmi-0.5.7+ds/src/prep.cpp:7: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ [ 82%] Building CXX object CMakeFiles/program.dir/src/reindex.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/reindex.cpp.o -MF CMakeFiles/program.dir/src/reindex.cpp.o.d -o CMakeFiles/program.dir/src/reindex.cpp.o -c /build/gemmi-0.5.7+ds/src/reindex.cpp [ 82%] Building CXX object CMakeFiles/program.dir/src/residues.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/residues.cpp.o -MF CMakeFiles/program.dir/src/residues.cpp.o.d -o CMakeFiles/program.dir/src/residues.cpp.o -c /build/gemmi-0.5.7+ds/src/residues.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/select.hpp:16, from /build/gemmi-0.5.7+ds/src/residues.cpp:5: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ [ 85%] Building CXX object CMakeFiles/program.dir/src/rmsz.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/rmsz.cpp.o -MF CMakeFiles/program.dir/src/rmsz.cpp.o.d -o CMakeFiles/program.dir/src/rmsz.cpp.o -c /build/gemmi-0.5.7+ds/src/rmsz.cpp [ 87%] Building CXX object CMakeFiles/program.dir/src/sf2map.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/sf2map.cpp.o -MF CMakeFiles/program.dir/src/sf2map.cpp.o.d -o CMakeFiles/program.dir/src/sf2map.cpp.o -c /build/gemmi-0.5.7+ds/src/sf2map.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/select.hpp:16, from /build/gemmi-0.5.7+ds/src/sf2map.cpp:8: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ [ 90%] Building CXX object CMakeFiles/program.dir/src/sfcalc.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/sfcalc.cpp.o -MF CMakeFiles/program.dir/src/sfcalc.cpp.o.d -o CMakeFiles/program.dir/src/sfcalc.cpp.o -c /build/gemmi-0.5.7+ds/src/sfcalc.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/smcif.hpp:12, from /build/gemmi-0.5.7+ds/src/sfcalc.cpp:20: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ [ 90%] Building CXX object CMakeFiles/program.dir/src/sg.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/sg.cpp.o -MF CMakeFiles/program.dir/src/sg.cpp.o.d -o CMakeFiles/program.dir/src/sg.cpp.o -c /build/gemmi-0.5.7+ds/src/sg.cpp [ 92%] Building CXX object CMakeFiles/program.dir/src/tags.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/tags.cpp.o -MF CMakeFiles/program.dir/src/tags.cpp.o.d -o CMakeFiles/program.dir/src/tags.cpp.o -c /build/gemmi-0.5.7+ds/src/tags.cpp [ 95%] Building CXX object CMakeFiles/program.dir/src/validate.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/validate.cpp.o -MF CMakeFiles/program.dir/src/validate.cpp.o.d -o CMakeFiles/program.dir/src/validate.cpp.o -c /build/gemmi-0.5.7+ds/src/validate.cpp [ 95%] Building CXX object CMakeFiles/program.dir/src/validate_mon.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/validate_mon.cpp.o -MF CMakeFiles/program.dir/src/validate_mon.cpp.o.d -o CMakeFiles/program.dir/src/validate_mon.cpp.o -c /build/gemmi-0.5.7+ds/src/validate_mon.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/it92.hpp:16, from /build/gemmi-0.5.7+ds/src/sfcalc.cpp:12: /build/gemmi-0.5.7+ds/include/gemmi/formfact.hpp: In instantiation of 'std::pair<_ForwardIterator, _ForwardIterator> gemmi::ExpSum::calculate_with_derivative(Real) const [with int N = 5; Real = double]': /build/gemmi-0.5.7+ds/include/gemmi/dencalc.hpp:19:54: required from 'double gemmi::determine_cutoff_radius(double, const PrecalExpSum&, double) [with PrecalExpSum = ExpSum<5, double>]' /build/gemmi-0.5.7+ds/include/gemmi/dencalc.hpp:130:35: required from 'double gemmi::DensityCalculator::estimate_radius(const gemmi::ExpSum&, double) const [with int N = 5; Table = gemmi::IT92; Real = float; typename Table::Coef::coef_type = double; typename Table::Coef = gemmi::GaussianCoef<4, 1, double>]' /build/gemmi-0.5.7+ds/include/gemmi/dencalc.hpp:140:38: required from 'void gemmi::DensityCalculator::do_add_atom_density_to_grid(const gemmi::Atom&, const Coef&, float) [with Coef = gemmi::GaussianCoef<4, 1, double>; Table = gemmi::IT92; Real = float]' /build/gemmi-0.5.7+ds/include/gemmi/dencalc.hpp:116:32: required from 'void gemmi::DensityCalculator::add_atom_density_to_grid(const gemmi::Atom&) [with Table = gemmi::IT92; Real = float]' /build/gemmi-0.5.7+ds/include/gemmi/dencalc.hpp:179:11: required from 'void gemmi::DensityCalculator::add_model_density_to_grid(const gemmi::Model&) [with Table = gemmi::IT92; Real = float]' /build/gemmi-0.5.7+ds/include/gemmi/dencalc.hpp:184:5: required from 'void gemmi::DensityCalculator::put_model_density_on_grid(const gemmi::Model&) [with Table = gemmi::IT92; Real = float]' /build/gemmi-0.5.7+ds/src/sfcalc.cpp:232:36: required from 'void {anonymous}::process_with_fft(const gemmi::Structure&, gemmi::DensityCalculator&, bool, const gemmi::SolventMasker&, gemmi::Scaling&, bool, const RefFile&, const gemmi::AsuData >&, const char*) [with Table = gemmi::IT92; Real = float]' /build/gemmi-0.5.7+ds/src/sfcalc.cpp:654:23: required from 'void {anonymous}::process_with_table(bool, gemmi::Structure&, const gemmi::SmallStructure&, double, bool, const OptParser&) [with Table = gemmi::IT92]' /build/gemmi-0.5.7+ds/src/sfcalc.cpp:757:44: required from here /build/gemmi-0.5.7+ds/include/gemmi/formfact.hpp:28:24: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 28 | std::pair calculate_with_derivative(Real r) const { | ^~~~~~~~~~~~~~~~~~~~~~~~~ [ 97%] Building CXX object CMakeFiles/program.dir/src/wcn.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/program.dir/src/wcn.cpp.o -MF CMakeFiles/program.dir/src/wcn.cpp.o.d -o CMakeFiles/program.dir/src/wcn.cpp.o -c 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-ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -UNDEBUG -std=c++17 -MD -MT CMakeFiles/doc_example.dir/docs/code/sym.cpp.o -MF CMakeFiles/doc_example.dir/docs/code/sym.cpp.o.d -o CMakeFiles/doc_example.dir/docs/code/sym.cpp.o -c /build/gemmi-0.5.7+ds/docs/code/sym.cpp [ 21%] Building CXX object CMakeFiles/doc_example2.dir/docs/code/cif_cc.cpp.o [ 24%] Building CXX object CMakeFiles/hello.dir/examples/hello.cpp.o /usr/bin/c++ -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/doc_example2.dir/docs/code/cif_cc.cpp.o -MF CMakeFiles/doc_example2.dir/docs/code/cif_cc.cpp.o.d -o CMakeFiles/doc_example2.dir/docs/code/cif_cc.cpp.o -c /build/gemmi-0.5.7+ds/docs/code/cif_cc.cpp /usr/bin/c++ -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/hello.dir/examples/hello.cpp.o -MF CMakeFiles/hello.dir/examples/hello.cpp.o.d -o CMakeFiles/hello.dir/examples/hello.cpp.o -c /build/gemmi-0.5.7+ds/examples/hello.cpp In file included from /build/gemmi-0.5.7+ds/include/gemmi/mtz.hpp:1176, from /build/gemmi-0.5.7+ds/docs/code/newmtz.cpp:2: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ In file included from /build/gemmi-0.5.7+ds/include/gemmi/mtz.hpp:1176, from /build/gemmi-0.5.7+ds/include/gemmi/merge.hpp:15, from /build/gemmi-0.5.7+ds/tests/cif.cpp:93: /build/gemmi-0.5.7+ds/include/gemmi/sprintf.hpp:26:4: warning: #warning "Using system stb_sprintf.h, not the bundled one. It may not work." [-Wcpp] 26 | # warning "Using system stb_sprintf.h, not the bundled one. It may not work." | ^~~~~~~ [ 26%] Building CXX object CMakeFiles/doc_example.dir/docs/code/elem.cpp.o /usr/bin/c++ -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -UNDEBUG -std=c++17 -MD -MT CMakeFiles/doc_example.dir/docs/code/elem.cpp.o -MF CMakeFiles/doc_example.dir/docs/code/elem.cpp.o.d -o CMakeFiles/doc_example.dir/docs/code/elem.cpp.o -c /build/gemmi-0.5.7+ds/docs/code/elem.cpp [ 29%] Building CXX object CMakeFiles/doc_example.dir/docs/code/resinfo.cpp.o /usr/bin/c++ -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -UNDEBUG -std=c++17 -MD -MT CMakeFiles/doc_example.dir/docs/code/resinfo.cpp.o -MF CMakeFiles/doc_example.dir/docs/code/resinfo.cpp.o.d -o CMakeFiles/doc_example.dir/docs/code/resinfo.cpp.o -c /build/gemmi-0.5.7+ds/docs/code/resinfo.cpp [ 29%] Building CXX object CMakeFiles/doc_example.dir/docs/code/cell.cpp.o /usr/bin/c++ -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -UNDEBUG -std=c++17 -MD -MT CMakeFiles/doc_example.dir/docs/code/cell.cpp.o -MF CMakeFiles/doc_example.dir/docs/code/cell.cpp.o.d -o CMakeFiles/doc_example.dir/docs/code/cell.cpp.o -c /build/gemmi-0.5.7+ds/docs/code/cell.cpp [ 31%] Linking CXX executable doc_example /usr/bin/cmake -E cmake_link_script CMakeFiles/doc_example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/doc_example.dir/docs/code/sym.cpp.o CMakeFiles/doc_example.dir/docs/code/elem.cpp.o CMakeFiles/doc_example.dir/docs/code/resinfo.cpp.o CMakeFiles/doc_example.dir/docs/code/cell.cpp.o -o doc_example make[5]: Leaving directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' [ 31%] Built target doc_example make -f CMakeFiles/doc_maybegz.dir/build.make CMakeFiles/doc_maybegz.dir/depend make[5]: Entering directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' cd /build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu /build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu /build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu/CMakeFiles/doc_maybegz.dir/DependInfo.cmake --color= make[5]: Leaving directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' make -f CMakeFiles/doc_maybegz.dir/build.make CMakeFiles/doc_maybegz.dir/build make[5]: Entering directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' [ 34%] Building CXX object CMakeFiles/doc_maybegz.dir/docs/code/maybegz.cpp.o /usr/bin/c++ -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/doc_maybegz.dir/docs/code/maybegz.cpp.o -MF CMakeFiles/doc_maybegz.dir/docs/code/maybegz.cpp.o.d -o CMakeFiles/doc_maybegz.dir/docs/code/maybegz.cpp.o -c /build/gemmi-0.5.7+ds/docs/code/maybegz.cpp [ 36%] Linking CXX executable doc_newmtz /usr/bin/cmake -E cmake_link_script CMakeFiles/doc_newmtz.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/doc_newmtz.dir/docs/code/newmtz.cpp.o -o doc_newmtz make[5]: Leaving directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' [ 36%] Built target doc_newmtz make -f CMakeFiles/program.dir/build.make CMakeFiles/program.dir/depend make[5]: Entering directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' cd /build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu /build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu /build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu/CMakeFiles/program.dir/DependInfo.cmake --color= Dependencies file "CMakeFiles/program.dir/src/align.cpp.o.d" is newer than depends file "/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu/CMakeFiles/program.dir/compiler_depend.internal". 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Consolidate compiler generated dependencies of target program make[5]: Leaving directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' make -f CMakeFiles/program.dir/build.make CMakeFiles/program.dir/build make[5]: Entering directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' make[5]: Nothing to be done for 'CMakeFiles/program.dir/build'. make[5]: Leaving directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' [ 90%] Built target program make -f CMakeFiles/print-version.dir/build.make CMakeFiles/print-version.dir/depend make[5]: Entering directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' cd /build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu /build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu /build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu/CMakeFiles/print-version.dir/DependInfo.cmake --color= make[5]: Leaving directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' make -f CMakeFiles/print-version.dir/build.make CMakeFiles/print-version.dir/build make[5]: Entering directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' [ 92%] gemmi --version cd /build/gemmi-0.5.7+ds && /build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu/gemmi --version gemmi 0.5.7 make[5]: Leaving directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' [ 92%] Built target print-version [ 95%] Building CXX object CMakeFiles/doc_maybegz.dir/docs/code/mutate.cpp.o /usr/bin/c++ -I/build/gemmi-0.5.7+ds/include -I/build/gemmi-0.5.7+ds/third_party -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT CMakeFiles/doc_maybegz.dir/docs/code/mutate.cpp.o -MF CMakeFiles/doc_maybegz.dir/docs/code/mutate.cpp.o.d -o CMakeFiles/doc_maybegz.dir/docs/code/mutate.cpp.o -c /build/gemmi-0.5.7+ds/docs/code/mutate.cpp [ 95%] Linking CXX executable hello 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/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/test_disulf.dir/tests/disulf.cpp.o -o test_disulf /usr/lib/aarch64-linux-gnu/libz.so make[5]: Leaving directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' [ 97%] Built target test_disulf [100%] Linking CXX executable doc_maybegz /usr/bin/cmake -E cmake_link_script CMakeFiles/doc_maybegz.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/gemmi-0.5.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/doc_maybegz.dir/docs/code/maybegz.cpp.o CMakeFiles/doc_maybegz.dir/docs/code/mutate.cpp.o -o doc_maybegz /usr/lib/aarch64-linux-gnu/libz.so make[5]: Leaving directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' [100%] Built target doc_maybegz make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[5]: Entering directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' cd /build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds /build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu /build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu /build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu/CMakeFiles/check.dir/DependInfo.cmake --color= make[5]: Leaving directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[5]: Entering directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' /usr/bin/ctest -C None Test project /build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu Start 1: cpptest 1/1 Test #1: cpptest .......................... Passed 0.01 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 0.01 sec make[5]: Leaving directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' [100%] Built target check make[4]: Leaving directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' make[2]: Leaving directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' PYTHONPATH=$(find . -name 'obj-*') pytest-3 -k 'not test_sfcalc_' ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack rootdir: /build/gemmi-0.5.7+ds collected 173 items / 2 deselected / 171 selected tests/test_align.py ... [ 1%] tests/test_cif.py ..................... [ 14%] tests/test_cif_json.py ..... [ 16%] tests/test_elem.py ..... [ 19%] tests/test_examples.py ............ [ 26%] tests/test_grid.py ...... [ 30%] tests/test_hkl.py ....... [ 34%] tests/test_misc.py .. [ 35%] tests/test_mol.py ........................................... [ 60%] tests/test_monlib.py ........ [ 65%] tests/test_neighbor.py ..... [ 68%] tests/test_prog.py sssssssss [ 73%] tests/test_sf.py . [ 74%] tests/test_smallmol.py .... [ 76%] tests/test_symmetry.py ...................... [ 89%] tests/test_twin.py .... [ 91%] tests/test_unitcell.py .............. [100%] ================= 162 passed, 9 skipped, 2 deselected in 3.97s ================= make[1]: Leaving directory '/build/gemmi-0.5.7+ds' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j8 install DESTDIR=/build/gemmi-0.5.7\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/gemmi-0.5.7+ds -B/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: 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/build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/ccd_gi.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/aafreq.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/__main__.py -- Installing: /build/gemmi-0.5.7+ds/debian/tmp/usr/local/lib/python3.11/dist-packages/gemmi-examples/__init__.py make[1]: Leaving directory '/build/gemmi-0.5.7+ds/obj-aarch64-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake debian/rules override_dh_installman make[1]: Entering directory '/build/gemmi-0.5.7+ds' help2man 'tail -n +9 docs/gemmi-help.txt' \ --version-string 0.5.7+ds --name 'CLI for GEMMI library' \ --no-info --help-option '' > debian/gemmi.1 sed -i 's/.TH GEMMI-HELP.TXT/.TH gemmi/' debian/gemmi.1 sed -i 's/gemmi-help.txt/gemmi/' debian/gemmi.1 dh_installman make[1]: Leaving directory '/build/gemmi-0.5.7+ds' dh_python3 -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dwz: debian/python3-gemmi/usr/lib/python3/dist-packages/gemmi.cpython-311-aarch64-linux-gnu.so: .debug_info section not present dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dpkg-gencontrol: warning: Provides field of package python3-gemmi: substitution variable ${python3:Provides} used, but is not defined dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'gemmi-dbgsym' in '../gemmi-dbgsym_0.5.7+ds-2_arm64.deb'. dpkg-deb: building package 'gemmi-dev' in '../gemmi-dev_0.5.7+ds-2_arm64.deb'. dpkg-deb: building package 'gemmi' in '../gemmi_0.5.7+ds-2_arm64.deb'. dpkg-deb: building package 'python3-gemmi' in '../python3-gemmi_0.5.7+ds-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../gemmi_0.5.7+ds-2_arm64.buildinfo dpkg-genchanges --build=binary -O../gemmi_0.5.7+ds-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/27929 and its subdirectories I: Current time: Wed Jul 3 15:45:04 -12 2024 I: pbuilder-time-stamp: 1720064704 Thu Jun 1 21:22:08 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink16-arm64.debian.net. Thu Jun 1 21:22:08 UTC 2023 I: Preparing to do remote build '2' on codethink16-arm64.debian.net. Thu Jun 1 21:44:14 UTC 2023 I: Deleting $TMPDIR on codethink16-arm64.debian.net. Thu Jun 1 21:44:15 UTC 2023 I: gemmi_0.5.7+ds-2_arm64.changes: Format: 1.8 Date: Tue, 04 Oct 2022 03:51:36 -0400 Source: gemmi Binary: gemmi gemmi-dbgsym gemmi-dev python3-gemmi Architecture: arm64 Version: 0.5.7+ds-2 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Andrius Merkys Description: gemmi - library for structural biology - executable gemmi-dev - library for structural biology python3-gemmi - library for structural biology - Python module Changes: gemmi (0.5.7+ds-2) unstable; urgency=medium . * Not running test_sfcalc4 autopkgtest: fails on i386 due to precision. * Update standards version to 4.6.1, no changes needed. Checksums-Sha1: ca64bdf2d3febaa081dbe04a723010e820eac4e2 26130500 gemmi-dbgsym_0.5.7+ds-2_arm64.deb 953d9482240414d8d0bee5875c83d42464f73ee9 403616 gemmi-dev_0.5.7+ds-2_arm64.deb cbaaeb3234b43899f093e7e9a1e5f320fd01b59e 7771 gemmi_0.5.7+ds-2_arm64.buildinfo 8c2fa574350bb7471c5ebeaaf6e6f49db2189e62 975192 gemmi_0.5.7+ds-2_arm64.deb 535fb80a28f6bce59f2893760f23e9b45e476374 1479212 python3-gemmi_0.5.7+ds-2_arm64.deb Checksums-Sha256: b40a11aa76543dc9034faa0382cb85918832628a68e043ce35d88e2bbecf231a 26130500 gemmi-dbgsym_0.5.7+ds-2_arm64.deb d2c9d4968cf9d33522f9ffa00ea54ac5be498a01a5f9d9dd081e5a0f8cc503b1 403616 gemmi-dev_0.5.7+ds-2_arm64.deb a468c04f24423660d0ef090b30a57a587d23f7a9f96a8a5ed11cc725da136931 7771 gemmi_0.5.7+ds-2_arm64.buildinfo 422c33139b8ec2e0fad005c8b3c0c812eddd1d47ee03648601a0fcc243c53a95 975192 gemmi_0.5.7+ds-2_arm64.deb 1e1074d5e682dffc0425a73aa1551e8478607baae97bbf3bbaebb468de88d134 1479212 python3-gemmi_0.5.7+ds-2_arm64.deb Files: e57aa395e3336df787427445f9cbab62 26130500 debug optional gemmi-dbgsym_0.5.7+ds-2_arm64.deb d785b03a0685708663d8ba53c26a24b6 403616 libdevel optional gemmi-dev_0.5.7+ds-2_arm64.deb edad82cbbb25c3ba2a73105cb611cfd0 7771 science optional gemmi_0.5.7+ds-2_arm64.buildinfo e4d3584825dd03128508f28778a8fad4 975192 science optional gemmi_0.5.7+ds-2_arm64.deb 726cffb7350bb865ad0b03c2419a9f54 1479212 python optional python3-gemmi_0.5.7+ds-2_arm64.deb Thu Jun 1 21:44:16 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.FO897zsf/gemmi_0.5.7+ds-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.FO897zsf/gemmi_0.5.7+ds-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.FO897zsf/gemmi_0.5.7+ds-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.FO897zsf/b1/gemmi_0.5.7+ds-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.FO897zsf/b2/gemmi_0.5.7+ds-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.822s) 0.822s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.321s) 0.320s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Thu Jun 1 21:44:17 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Thu Jun 1 21:44:17 UTC 2023 I: gemmi from bookworm built successfully and reproducibly on arm64. Thu Jun 1 21:44:19 UTC 2023 I: Submitting .buildinfo files to external archives: Thu Jun 1 21:44:19 UTC 2023 I: Submitting 12K b1/gemmi_0.5.7+ds-2_arm64.buildinfo.asc Thu Jun 1 21:44:21 UTC 2023 I: Submitting 12K b2/gemmi_0.5.7+ds-2_arm64.buildinfo.asc Thu Jun 1 21:44:21 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jun 1 21:44:22 UTC 2023 I: Done submitting .buildinfo files. Thu Jun 1 21:44:22 UTC 2023 I: Removing signed gemmi_0.5.7+ds-2_arm64.buildinfo.asc files: removed './b1/gemmi_0.5.7+ds-2_arm64.buildinfo.asc' removed './b2/gemmi_0.5.7+ds-2_arm64.buildinfo.asc'