Sat Apr 8 09:08:18 UTC 2023 I: starting to build fastqtl/bookworm/arm64 on jenkins on '2023-04-08 09:08' Sat Apr 8 09:08:18 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_19/27390/console.log Sat Apr 8 09:08:18 UTC 2023 I: Downloading source for bookworm/fastqtl=2.184+v7+dfsg-3 --2023-04-08 09:08:18-- http://cdn-fastly.deb.debian.org/debian/pool/main/f/fastqtl/fastqtl_2.184%2bv7%2bdfsg-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2366 (2.3K) [text/prs.lines.tag] Saving to: ‘fastqtl_2.184+v7+dfsg-3.dsc’ 0K .. 100% 173M=0s 2023-04-08 09:08:18 (173 MB/s) - ‘fastqtl_2.184+v7+dfsg-3.dsc’ saved [2366/2366] Sat Apr 8 09:08:18 UTC 2023 I: fastqtl_2.184+v7+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: fastqtl Binary: fastqtl, fastqtl-doc Architecture: any all Version: 2.184+v7+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Dylan Aïssi Homepage: http://fastqtl.sourceforge.net/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/fastqtl Vcs-Git: https://salsa.debian.org/med-team/fastqtl.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3, libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libgsl-dev, r-mathlib, zlib1g-dev, libblas-dev, libeigen3-dev, libhts-dev, libbz2-dev Package-List: fastqtl deb science optional arch=any fastqtl-doc deb doc optional arch=all Checksums-Sha1: afda0774d21c6c870b5bf319751f46a641d1dd12 17128664 fastqtl_2.184+v7+dfsg.orig.tar.xz b4f04e334d20302ee310bce9402ec9500d257227 20796 fastqtl_2.184+v7+dfsg-3.debian.tar.xz Checksums-Sha256: a16310e5cc00873707decb7dad8acd9d5ae22bf4ade1fdbba3a99afc650a6232 17128664 fastqtl_2.184+v7+dfsg.orig.tar.xz b364ceb5f6b352e8c908475f9ae671622e542be42bee2fdaee0bd96d1cb66582 20796 fastqtl_2.184+v7+dfsg-3.debian.tar.xz Files: 0315c13229da6648d451f9025370a919 17128664 fastqtl_2.184+v7+dfsg.orig.tar.xz eea9107515f36d9e41ff982111c1d472 20796 fastqtl_2.184+v7+dfsg-3.debian.tar.xz Dgit: e21732ceefe8551bfe0bd942d37499009e81fc77 debian archive/debian/2.184+v7+dfsg-3 https://git.dgit.debian.org/fastqtl -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmNT2+gUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpu9hAAghE3QdydzL9hPFXuduF+czT6JtbR 4QCBeArbU3sI846Cd2DVnlJ7e3vTNm6a+DUxVHoZlt6INWJePbS2f41pEzXtmJJm d+4WZ63Bi6vjA7IcqCv+rXeV+szIClCQN4DBJddRbi7jeUV7TzYbHJ4Zo89VAfW4 8EnbTs4Z0sV/bLlD9rygQA9QbcX85hmJhDgmR+OCxfj6h15eTJNzJT+T5FuDl5Gr bg/wEgUnsnmC+IvKqpdsyBZH6fok8spM3RPglkIU1yPS8xYrIrGknvtj0OTuho3d stlEFc8bYxTicz1LpzjyLjSgOhWyWoV0nMvWYcIIhE8iE4J8N1puh1tW/a3ChAfF yyb+H/L9V4h210RKmHu+3HP5IqjrNMogJ+2AVU3vmpCkrSYUv/AMUSE71oJUWHC7 jprrdE63Zd96jkBX+/wQGDcaS8vDO8GSQUPKVjQ5r5xO5xziJmaVXA/uoEhpMbyh /TPB6mcCphjmxyrwSX72w2LLL6rqNkum36YtOWlR0ekEHtMhwQ+odyOBx0J6DNHs riwohawtJg+J8zXn8ybNclGgPSoq+3goZYehWXV/SI8vU0XgLQNLz/Qwkg4q3b8M 5kAtjoXfRPT9vwxZsV8XOU+BKJWrHcDUmTl/eWam73OcRCuoS5xp2gkXtYw6ZRBR A/wNuHpl0iC8TZM= =QOgX -----END PGP SIGNATURE----- Sat Apr 8 09:08:18 UTC 2023 I: Checking whether the package is not for us Sat Apr 8 09:08:18 UTC 2023 I: Starting 1st build on remote node codethink13-arm64.debian.net. Sat Apr 8 09:08:18 UTC 2023 I: Preparing to do remote build '1' on codethink13-arm64.debian.net. Sat Apr 8 09:11:37 UTC 2023 I: Deleting $TMPDIR on codethink13-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri May 10 03:31:22 -12 2024 I: pbuilder-time-stamp: 1715355082 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fastqtl_2.184+v7+dfsg-3.dsc] I: copying [./fastqtl_2.184+v7+dfsg.orig.tar.xz] I: copying [./fastqtl_2.184+v7+dfsg-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Oct 22 00:02:48 2022 -12 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fastqtl_2.184+v7+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting fastqtl in fastqtl-2.184+v7+dfsg dpkg-source: info: unpacking fastqtl_2.184+v7+dfsg.orig.tar.xz dpkg-source: info: unpacking fastqtl_2.184+v7+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_Makefile_dynamic_hardenings.patch dpkg-source: info: applying 02_Replace_libtabix_by_libhts.patch dpkg-source: info: applying 03_Reproducible_builds.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying set_path.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/17020/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='17020' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rNsW7Ueq/pbuilderrc_fvks --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rNsW7Ueq/b1 --logfile b1/build.log fastqtl_2.184+v7+dfsg-3.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink13-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 7 04:48 /bin -> usr/bin I: user script /srv/workspace/pbuilder/17020/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libgsl-dev, r-mathlib, zlib1g-dev, libblas-dev, libeigen3-dev, libhts-dev, libbz2-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on r-mathlib; however: Package r-mathlib is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev; however: Package libblas-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost1.74-dev{a} libbrotli1{a} libbz2-dev{a} libcurl3-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libeigen3-dev{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgsl-dev{a} libgsl27{a} libgslcblas0{a} libhts-dev{a} libhts3{a} libhtscodecs2{a} libicu-dev{a} libicu72{a} libldap-2.5-0{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} r-mathlib{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix r-base-core r-base-dev wget 0 packages upgraded, 84 newly installed, 0 to remove and 0 not upgraded. Need to get 56.4 MB of archives. After unpacking 348 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-minimal arm64 3.11.2-6 [806 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 python3.11-minimal arm64 3.11.2-6 [1858 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 python3-minimal arm64 3.11.2-1 [26.0 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-stdlib arm64 3.11.2-6 [1747 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 python3.11 arm64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 libpython3-stdlib arm64 3.11.2-1 [9012 B] Get: 11 http://deb.debian.org/debian bookworm/main arm64 python3 arm64 3.11.2-1 [26.0 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 32 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 34 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 37 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.1+b3 [619 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 python3-distutils all 3.11.2-2 [131 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 dh-python all 5.20230130 [104 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 icu-devtools arm64 72.1-3 [192 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 libblas3 arm64 3.11.0-2 [91.4 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 libblas-dev arm64 3.11.0-2 [97.6 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 libboost1.74-dev arm64 1.74.0+ds1-20 [9510 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 libboost-dev arm64 1.74.0.3 [4548 B] Get: 50 http://deb.debian.org/debian bookworm/main arm64 libboost-regex1.74.0 arm64 1.74.0+ds1-20 [448 kB] Get: 51 http://deb.debian.org/debian bookworm/main arm64 libicu-dev arm64 72.1-3 [10.2 MB] Get: 52 http://deb.debian.org/debian bookworm/main arm64 libboost-regex1.74-dev arm64 1.74.0+ds1-20 [525 kB] Get: 53 http://deb.debian.org/debian bookworm/main arm64 libboost-iostreams1.74-dev arm64 1.74.0+ds1-20 [247 kB] Get: 54 http://deb.debian.org/debian bookworm/main arm64 libboost-iostreams-dev arm64 1.74.0.3 [4316 B] Get: 55 http://deb.debian.org/debian bookworm/main arm64 libboost-program-options1.74.0 arm64 1.74.0+ds1-20 [317 kB] Get: 56 http://deb.debian.org/debian bookworm/main arm64 libboost-program-options1.74-dev arm64 1.74.0+ds1-20 [354 kB] Get: 57 http://deb.debian.org/debian bookworm/main arm64 libboost-program-options-dev arm64 1.74.0.3 [4340 B] Get: 58 http://deb.debian.org/debian bookworm/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB] Get: 59 http://deb.debian.org/debian bookworm/main arm64 libbz2-dev arm64 1.0.8-5+b1 [31.5 kB] Get: 60 http://deb.debian.org/debian bookworm/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-10 [20.8 kB] Get: 61 http://deb.debian.org/debian bookworm/main arm64 libsasl2-2 arm64 2.1.28+dfsg-10 [58.0 kB] Get: 62 http://deb.debian.org/debian bookworm/main arm64 libldap-2.5-0 arm64 2.5.13+dfsg-5 [171 kB] Get: 63 http://deb.debian.org/debian bookworm/main arm64 libnghttp2-14 arm64 1.52.0-1 [67.9 kB] Get: 64 http://deb.debian.org/debian bookworm/main arm64 libpsl5 arm64 0.21.2-1 [58.6 kB] Get: 65 http://deb.debian.org/debian bookworm/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 66 http://deb.debian.org/debian bookworm/main arm64 libssh2-1 arm64 1.10.0-3+b1 [172 kB] Get: 67 http://deb.debian.org/debian bookworm/main arm64 libcurl3-gnutls arm64 7.88.1-7 [356 kB] Get: 68 http://deb.debian.org/debian bookworm/main arm64 libcurl4-gnutls-dev arm64 7.88.1-7 [466 kB] Get: 69 http://deb.debian.org/debian bookworm/main arm64 libdeflate0 arm64 1.14-1 [54.3 kB] Get: 70 http://deb.debian.org/debian bookworm/main arm64 libdeflate-dev arm64 1.14-1 [50.0 kB] Get: 71 http://deb.debian.org/debian bookworm/main arm64 libpkgconf3 arm64 1.8.1-1 [35.3 kB] Get: 72 http://deb.debian.org/debian bookworm/main arm64 pkgconf-bin arm64 1.8.1-1 [28.9 kB] Get: 73 http://deb.debian.org/debian bookworm/main arm64 pkgconf arm64 1.8.1-1 [25.9 kB] Get: 74 http://deb.debian.org/debian bookworm/main arm64 pkg-config arm64 1.8.1-1 [13.7 kB] Get: 75 http://deb.debian.org/debian bookworm/main arm64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 76 http://deb.debian.org/debian bookworm/main arm64 libgslcblas0 arm64 2.7.1+dfsg-3+b1 [82.3 kB] Get: 77 http://deb.debian.org/debian bookworm/main arm64 libgsl27 arm64 2.7.1+dfsg-3+b1 [824 kB] Get: 78 http://deb.debian.org/debian bookworm/main arm64 libgsl-dev arm64 2.7.1+dfsg-3+b1 [1035 kB] Get: 79 http://deb.debian.org/debian bookworm/main arm64 libhtscodecs2 arm64 1.3.0-4 [70.5 kB] Get: 80 http://deb.debian.org/debian bookworm/main arm64 libhts3 arm64 1.16+ds-3 [392 kB] Get: 81 http://deb.debian.org/debian bookworm/main arm64 liblzma-dev arm64 5.4.1-0.2 [255 kB] Get: 82 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] Get: 83 http://deb.debian.org/debian bookworm/main arm64 libhts-dev arm64 1.16+ds-3 [1525 kB] Get: 84 http://deb.debian.org/debian bookworm/main arm64 r-mathlib arm64 4.2.2.20221110-2 [2269 kB] Fetched 56.4 MB in 2s (37.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.2-6) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.5.0-1_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. 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Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libgsl-dev (2.7.1+dfsg-3+b1) ... Setting up libtool (2.4.7-5) ... Setting up libreadline8:arm64 (8.2-1.3) ... Setting up libldap-2.5-0:arm64 (2.5.13+dfsg-5) ... Setting up pkgconf:arm64 (1.8.1-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libeigen3-dev (3.4.0-4) ... Setting up pkg-config:arm64 (1.8.1-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up libboost-regex1.74-dev:arm64 (1.74.0+ds1-20) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.2-6) ... Setting up libcurl3-gnutls:arm64 (7.88.1-7) ... Setting up libcurl4-gnutls-dev:arm64 (7.88.1-7) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libboost-iostreams1.74-dev:arm64 (1.74.0+ds1-20) ... Setting up libpython3-stdlib:arm64 (3.11.2-1) ... Setting up python3.11 (3.11.2-6) ... Setting up libhts3:arm64 (1.16+ds-3) ... Setting up libhts-dev:arm64 (1.16+ds-3) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1) ... Setting up libboost-iostreams-dev:arm64 (1.74.0.3) ... Setting up python3-lib2to3 (3.11.2-2) ... Setting up python3-distutils (3.11.2-2) ... Setting up dh-python (5.20230130) ... Processing triggers for libc-bin (2.36-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/fastqtl-2.184+v7+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fastqtl_2.184+v7+dfsg-3_source.changes dpkg-buildpackage: info: source package fastqtl dpkg-buildpackage: info: source version 2.184+v7+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 dh_auto_clean make -j8 clean make[1]: Entering directory '/build/fastqtl-2.184+v7+dfsg' rm -f obj/*.o bin/fastQTL make[1]: Leaving directory '/build/fastqtl-2.184+v7+dfsg' dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/fastqtl-2.184+v7+dfsg' mkdir -p /build/fastqtl-2.184+v7+dfsg/obj/ mkdir -p /build/fastqtl-2.184+v7+dfsg/bin/ dh_auto_build -- CXXFLAGS='-g -ffile-prefix-map=/build/fastqtl-2.184+v7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14' make -j8 "INSTALL=install --strip-program=true" "CXXFLAGS=-g -ffile-prefix-map=/build/fastqtl-2.184+v7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14" make[2]: Entering directory '/build/fastqtl-2.184+v7+dfsg' g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-2.184+v7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisMapping.o -c src/analysisMapping.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-2.184+v7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisNominal.o -c src/analysisNominal.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-2.184+v7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisNominalBest.o -c src/analysisNominalBest.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-2.184+v7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutation.o -c src/analysisPermutation.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-2.184+v7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationInteraction.o -c src/analysisPermutationInteraction.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-2.184+v7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationPerGroup.o -c src/analysisPermutationPerGroup.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-2.184+v7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationSequence.o -c src/analysisPermutationSequence.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-2.184+v7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/commands.o -c src/commands.cpp -Isrc In file included from src/analysisNominal.cpp:17: src/data.h: In member function 'double data::getCorrelation(std::vector&, std::vector&)': src/data.h:180:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 180 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:181:9: note: here 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:181:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:182:9: note: here 182 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ In file included from src/analysisPermutation.cpp:17: src/data.h: In member function 'double data::getCorrelation(std::vector&, std::vector&)': src/data.h:180:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 180 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:181:9: note: here 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:181:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:182:9: note: here 182 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ In file included from src/analysisPermutationSequence.cpp:17: src/data.h: In member function 'double data::getCorrelation(std::vector&, std::vector&)': src/data.h:180:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 180 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:181:9: note: here 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:181:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:182:9: note: here 182 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ In file included from src/analysisPermutationInteraction.cpp:17: src/data.h: In member function 'double data::getCorrelation(std::vector&, std::vector&)': src/data.h:180:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 180 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:181:9: note: here 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:181:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:182:9: note: here 182 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ In file included from src/analysisNominalBest.cpp:17: src/data.h: In member function 'double data::getCorrelation(std::vector&, std::vector&)': src/data.h:180:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 180 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:181:9: note: here 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:181:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:182:9: note: here 182 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ In file included from src/analysisMapping.cpp:17: src/data.h: In member function 'double data::getCorrelation(std::vector&, std::vector&)': src/data.h:180:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 180 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:181:9: note: here 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:181:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:182:9: note: here 182 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ In file included from src/analysisPermutationPerGroup.cpp:17: src/data.h: In member function 'double data::getCorrelation(std::vector&, std::vector&)': src/data.h:180:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 180 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:181:9: note: here 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:181:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:182:9: note: here 182 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-2.184+v7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/df.o -c src/df.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-2.184+v7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/fastQTL.o -c src/fastQTL.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-2.184+v7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/management.o -c src/management.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-2.184+v7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/mle.o -c src/mle.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-2.184+v7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readCovariates.o -c src/readCovariates.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-2.184+v7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readGenotypes.o -c src/readGenotypes.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-2.184+v7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readGroups.o -c src/readGroups.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-2.184+v7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readInclusionsExclusions.o -c src/readInclusionsExclusions.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-2.184+v7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readInteractions.o -c src/readInteractions.cpp -Isrc In file included from src/management.cpp:20: src/data.h: In member function 'double data::getCorrelation(std::vector&, std::vector&)': src/data.h:180:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 180 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:181:9: note: here 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:181:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 181 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:182:9: note: here 182 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-2.184+v7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readPhenotypes.o -c src/readPhenotypes.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-2.184+v7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readThresholds.o -c src/readThresholds.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-2.184+v7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/residualizer.o -c src/residualizer.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-2.184+v7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/tabix.o -c src/utils/tabix.cpp -Isrc g++ -std=c++11 -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -ffile-prefix-map=/build/fastqtl-2.184+v7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/utils.o -c src/utils/utils.cpp -Isrc src/utils/tabix.cpp: In constructor 'Tabix::Tabix(std::string&)': src/utils/tabix.cpp:17:22: warning: 'int bgzf_is_bgzf(const char*)' is deprecated: Use bgzf_compression() or hts_detect_format() instead [-Wdeprecated-declarations] 17 | if ( bgzf_is_bgzf(cfilename)!=1 ) | ~~~~~~~~~~~~^~~~~~~~~~~ In file included from src/utils/tabix.hpp:12, from src/utils/tabix.cpp:6: /usr/include/htslib/bgzf.h:270:9: note: declared here 270 | int bgzf_is_bgzf(const char *fn) HTS_DEPRECATED("Use bgzf_compression() or hts_detect_format() instead"); | ^~~~~~~~~~~~ g++ -std=c++11 -O3 -Wl,-z,relro -Wl,-z,now obj/analysisMapping.o obj/analysisNominal.o obj/analysisNominalBest.o obj/analysisPermutation.o obj/analysisPermutationInteraction.o obj/analysisPermutationPerGroup.o obj/analysisPermutationSequence.o obj/commands.o obj/df.o obj/fastQTL.o obj/management.o obj/mle.o obj/readCovariates.o obj/readGenotypes.o obj/readGroups.o obj/readInclusionsExclusions.o obj/readInteractions.o obj/readPhenotypes.o obj/readThresholds.o obj/residualizer.o obj/tabix.o obj/utils.o -lRmath -lhts -lm -lz -lbz2 -lboost_iostreams -lboost_program_options -lgslcblas -lgsl -lblas -o bin/fastQTL make[2]: Leaving directory '/build/fastqtl-2.184+v7+dfsg' cd /build/fastqtl-2.184+v7+dfsg/example/ && \ tar Jcvf examples.tar.xz * --sort=name --mode=go=rX,u+rw,a-s --owner=root --group=root --numeric-owner covariates.txt.gz genotypes.vcf.gz genotypes.vcf.gz.tbi interaction.txt phenotypes.bed.gz phenotypes.bed.gz.tbi make[1]: Leaving directory '/build/fastqtl-2.184+v7+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install dh_install dh_installdocs dh_installchangelogs dh_installman dh_python3 I: dh_python3 tools:114: replacing shebang in debian/fastqtl/usr/bin/sort_index_pairs.py I: dh_python3 tools:114: replacing shebang in debian/fastqtl/usr/bin/run_chunk.py I: dh_python3 tools:114: replacing shebang in debian/fastqtl/usr/bin/run_FastQTL_threaded.py I: dh_python3 tools:114: replacing shebang in debian/fastqtl/usr/bin/merge_chunks.py I: dh_python3 tools:114: replacing shebang in debian/fastqtl/usr/bin/annotate_outputs.py dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms debian/rules execute_after_dh_fixperms-arch make[1]: Entering directory '/build/fastqtl-2.184+v7+dfsg' chmod -x debian/*/usr/share/fastqtl/*.R make[1]: Leaving directory '/build/fastqtl-2.184+v7+dfsg' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/fastqtl/usr/bin/fastQTL was not linked against libblas.so.3 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'fastqtl-dbgsym' in '../fastqtl-dbgsym_2.184+v7+dfsg-3_arm64.deb'. dpkg-deb: building package 'fastqtl' in '../fastqtl_2.184+v7+dfsg-3_arm64.deb'. dpkg-deb: building package 'fastqtl-doc' in '../fastqtl-doc_2.184+v7+dfsg-3_all.deb'. dpkg-genbuildinfo --build=binary -O../fastqtl_2.184+v7+dfsg-3_arm64.buildinfo dpkg-genchanges --build=binary -O../fastqtl_2.184+v7+dfsg-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/17020 and its subdirectories I: Current time: Fri May 10 03:34:33 -12 2024 I: pbuilder-time-stamp: 1715355273 Sat Apr 8 09:11:38 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink14-arm64.debian.net. Sat Apr 8 09:11:38 UTC 2023 I: Preparing to do remote build '2' on codethink14-arm64.debian.net. Sat Apr 8 09:17:46 UTC 2023 I: Deleting $TMPDIR on codethink14-arm64.debian.net. Sat Apr 8 09:17:47 UTC 2023 I: fastqtl_2.184+v7+dfsg-3_arm64.changes: Format: 1.8 Date: Sat, 22 Oct 2022 13:50:04 +0200 Source: fastqtl Binary: fastqtl fastqtl-dbgsym fastqtl-doc Architecture: arm64 all Version: 2.184+v7+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: fastqtl - Quantitative Trait Loci (QTL) mapper in cis for molecular phenoty fastqtl-doc - QTL mapper in cis for molecular phenotypes - documentation Closes: 1021994 1021995 Changes: fastqtl (2.184+v7+dfsg-3) unstable; urgency=medium . * Team upload. * d/rules: only fix permissions for arch-any builds. (Closes: #1021994) * d/t/fastqtl_expected_output.txt: update to match behavior of v7. (Closes: #1021995) Checksums-Sha1: ac5ffe3f3bfd273c57eeff7b5f79d5f72a93349d 5637224 fastqtl-dbgsym_2.184+v7+dfsg-3_arm64.deb 5795f6c91025a1015eed9eddf12ac8b744713235 17104760 fastqtl-doc_2.184+v7+dfsg-3_all.deb f2b3e4c6d201d297573c0552b3629ff12d3f5b5d 7463 fastqtl_2.184+v7+dfsg-3_arm64.buildinfo d33c0fdadb0f6d6ba2d7a795252a27b805f7cc15 201756 fastqtl_2.184+v7+dfsg-3_arm64.deb Checksums-Sha256: be8da88a2938c9122eeed1b982e14183a9fd4d8bfddb7d4793d8c852a44de645 5637224 fastqtl-dbgsym_2.184+v7+dfsg-3_arm64.deb e5018e5a44816e3e282c7d6fdad79303b2807f21a4a3b52cfb54672bb7091ffa 17104760 fastqtl-doc_2.184+v7+dfsg-3_all.deb a378350e7f71afbc6b31ada40c2052bd2d6e34b130bc005119ea86b616224f8d 7463 fastqtl_2.184+v7+dfsg-3_arm64.buildinfo 4332b2140d99ac70b8a22acfb8b3be7d51935b643323f0a45a7ba74623caa9cb 201756 fastqtl_2.184+v7+dfsg-3_arm64.deb Files: 86e96c3247f4d8f43cb61a6360c83b5c 5637224 debug optional fastqtl-dbgsym_2.184+v7+dfsg-3_arm64.deb 2886c8cf66641316a48787367452a718 17104760 doc optional fastqtl-doc_2.184+v7+dfsg-3_all.deb 433f63071e0502c1af9947a392ec4f11 7463 science optional fastqtl_2.184+v7+dfsg-3_arm64.buildinfo 91372b69d580a408325e91c7ab51bc49 201756 science optional fastqtl_2.184+v7+dfsg-3_arm64.deb Sat Apr 8 09:17:48 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.rNsW7Ueq/fastqtl_2.184+v7+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.rNsW7Ueq/fastqtl_2.184+v7+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.rNsW7Ueq/fastqtl_2.184+v7+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.rNsW7Ueq/b1/fastqtl_2.184+v7+dfsg-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.rNsW7Ueq/b2/fastqtl_2.184+v7+dfsg-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.633s) 0.633s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.265s) 0.264s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Sat Apr 8 09:17:50 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Sat Apr 8 09:17:50 UTC 2023 I: fastqtl from bookworm built successfully and reproducibly on arm64. Sat Apr 8 09:17:52 UTC 2023 I: Submitting .buildinfo files to external archives: Sat Apr 8 09:17:52 UTC 2023 I: Submitting 12K b1/fastqtl_2.184+v7+dfsg-3_arm64.buildinfo.asc Sat Apr 8 09:17:52 UTC 2023 I: Submitting 12K b2/fastqtl_2.184+v7+dfsg-3_arm64.buildinfo.asc Sat Apr 8 09:17:53 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Apr 8 09:17:53 UTC 2023 I: Done submitting .buildinfo files. Sat Apr 8 09:17:53 UTC 2023 I: Removing signed fastqtl_2.184+v7+dfsg-3_arm64.buildinfo.asc files: removed './b1/fastqtl_2.184+v7+dfsg-3_arm64.buildinfo.asc' removed './b2/fastqtl_2.184+v7+dfsg-3_arm64.buildinfo.asc'