Sun Apr 23 04:17:08 UTC 2023 I: starting to build bamkit/bookworm/arm64 on jenkins on '2023-04-23 04:16' Sun Apr 23 04:17:08 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_24/11522/console.log Sun Apr 23 04:17:08 UTC 2023 I: Downloading source for bookworm/bamkit=0.0.1+git20170413.ccd079d-3 --2023-04-23 04:17:09-- http://cdn-fastly.deb.debian.org/debian/pool/main/b/bamkit/bamkit_0.0.1%2bgit20170413.ccd079d-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2124 (2.1K) [text/prs.lines.tag] Saving to: ‘bamkit_0.0.1+git20170413.ccd079d-3.dsc’ 0K .. 100% 208M=0s 2023-04-23 04:17:09 (208 MB/s) - ‘bamkit_0.0.1+git20170413.ccd079d-3.dsc’ saved [2124/2124] Sun Apr 23 04:17:09 UTC 2023 I: bamkit_0.0.1+git20170413.ccd079d-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: bamkit Binary: bamkit Architecture: all Version: 0.0.1+git20170413.ccd079d-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/hall-lab/bamkit Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/bamkit Vcs-Git: https://salsa.debian.org/med-team/bamkit.git Testsuite: autopkgtest Testsuite-Triggers: samtools Build-Depends: debhelper-compat (= 13), dh-python, python3 Package-List: bamkit deb science optional arch=all Checksums-Sha1: 99b92bacf725cde65f353539aedab99db857709c 7772 bamkit_0.0.1+git20170413.ccd079d.orig.tar.xz f01f39c8f0eb109cdc37f620d4d09d53eab62d25 6420 bamkit_0.0.1+git20170413.ccd079d-3.debian.tar.xz Checksums-Sha256: 6e22825103f04c0f80fe8f4774fd1ac723ba3e2fe201e51f8d9c9834448ab5c0 7772 bamkit_0.0.1+git20170413.ccd079d.orig.tar.xz 28414dbb00a5ffa919cc379d8933b0f936c95b2b8aa445671683232e56934e13 6420 bamkit_0.0.1+git20170413.ccd079d-3.debian.tar.xz Files: 5ba95bcce19c43650911515986cfd652 7772 bamkit_0.0.1+git20170413.ccd079d.orig.tar.xz c7cdc16ef849e310e5a0dc726cc41da2 6420 bamkit_0.0.1+git20170413.ccd079d-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmEaTIsUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafHTbxAApCYVumc9cmDNs9WujSaw0FXDL3Vu xYBlVNSVfkx3VO+tQ6Yr84y46GzMx2mF3UYQba4/0KTDSTbktl0+tL6gj/zqG1Q0 CokivBLV2C0wJej5NcMWTT+/Y1BdQlgTr4GAxseLOAoRDBVdSHR552y1+raSGPrh 5ctaDur6DI0FrzT9uHrzQ90xuIgWD7/ONZFJEfV32PbbDPl1ttrW6D7ArgLKP/72 quJUr3W3l+mD7MYMwXBzkS/gRCUH4dNRO1Oe+iM9W/5+PLYC9msbQf6nUBfl1ice O1cUTicgBySvNTMXjd45I2+Xguw3VfxV00BDVrdmg9KWEhYlTQibTr61k6098nUx 7RWkZAsQPTL+XRfQIpEaTHZSMnFz+7OX2DRGBh9/Q9DhbvOEi6z2VJgA0WOSeFYa gTMKR6tb7Vcsb5PCdTlzwqQWzAGUZOGphpzPiwI1KbrBm2bdXTI5YhuDEOB/2cvA 6SLpqGFR8s489skJkTZ3+YgW6jLzMkr/MLZqMbMuVTia4nD2NMp5sR+YWURIiaaH F5FuRB1Ck3/1xkto76RqTvkFre7JOPgjpnesMsH5dPK1Mwwdx8eQYipq1vfT+YH8 BqJBJ3BMxhUNjdFxnnvONOQjYLSwqJiBUBk2buBE1FLH9HOxNdzypAjkaRFvIOr0 ZH5U1mn0Htqz/l0= =IHSO -----END PGP SIGNATURE----- Sun Apr 23 04:17:09 UTC 2023 I: Checking whether the package is not for us Sun Apr 23 04:17:09 UTC 2023 I: Starting 1st build on remote node codethink14-arm64.debian.net. Sun Apr 23 04:17:09 UTC 2023 I: Preparing to do remote build '1' on codethink14-arm64.debian.net. Sun Apr 23 04:18:12 UTC 2023 I: Deleting $TMPDIR on codethink14-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Apr 22 16:17:12 -12 2023 I: pbuilder-time-stamp: 1682223432 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [bamkit_0.0.1+git20170413.ccd079d-3.dsc] I: copying [./bamkit_0.0.1+git20170413.ccd079d.orig.tar.xz] I: copying [./bamkit_0.0.1+git20170413.ccd079d-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Aug 15 23:31:23 2021 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./bamkit_0.0.1+git20170413.ccd079d-3.dsc: no acceptable signature found dpkg-source: info: extracting bamkit in bamkit-0.0.1+git20170413.ccd079d dpkg-source: info: unpacking bamkit_0.0.1+git20170413.ccd079d.orig.tar.xz dpkg-source: info: unpacking bamkit_0.0.1+git20170413.ccd079d-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 2to3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/26309/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='26309' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.FPdy6zUC/pbuilderrc_04Lj --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.FPdy6zUC/b1 --logfile b1/build.log bamkit_0.0.1+git20170413.ccd079d-3.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink14-arm64 4.15.0-209-generic #220-Ubuntu SMP Tue Mar 21 19:52:44 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 21 22:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/26309/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 44 newly installed, 0 to remove and 0 not upgraded. Need to get 24.0 MB of archives. After unpacking 100 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-minimal arm64 3.11.2-6 [806 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 python3.11-minimal arm64 3.11.2-6 [1858 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 python3-minimal arm64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-stdlib arm64 3.11.2-6 [1747 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 python3.11 arm64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 libpython3-stdlib arm64 3.11.2-1+b1 [9296 B] Get: 11 http://deb.debian.org/debian bookworm/main arm64 python3 arm64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 32 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 34 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 37 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.1+b3 [619 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 python3-distutils all 3.11.2-2 [131 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 dh-python all 5.20230130 [104 kB] Fetched 24.0 MB in 1s (32.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.2-6) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.5.0-1_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_arm64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:arm64 (3.11.2-6) ... Setting up libexpat1:arm64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19932 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_arm64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../3-libreadline8_8.2-1.3_arm64.deb ... Unpacking libreadline8:arm64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:arm64. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_arm64.deb ... Unpacking libpython3.11-stdlib:arm64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_arm64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20366 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_arm64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../03-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../09-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../23-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../25-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../26-libxml2_2.9.14+dfsg-1.1+b3_arm64.deb ... 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Selecting previously unselected package dh-python. Preparing to unpack .../33-dh-python_5.20230130_all.deb ... Unpacking dh-python (5.20230130) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libicu72:arm64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-12) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.1+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libreadline8:arm64 (8.2-1.3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.2-6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-lib2to3 (3.11.2-2) ... Setting up python3-distutils (3.11.2-2) ... Setting up dh-python (5.20230130) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/bamkit-0.0.1+git20170413.ccd079d/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../bamkit_0.0.1+git20170413.ccd079d-3_source.changes dpkg-buildpackage: info: source package bamkit dpkg-buildpackage: info: source version 0.0.1+git20170413.ccd079d-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Shruti Sridhar dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/bamkit/ dh_install dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/bamkit-0.0.1+git20170413.ccd079d' dh_installman --language=C make[1]: Leaving directory '/build/bamkit-0.0.1+git20170413.ccd079d' dh_python3 I: dh_python3 tools:114: replacing shebang in debian/bamkit/usr/share/bamkit/bamcleanheader.py I: dh_python3 tools:114: replacing shebang in debian/bamkit/usr/share/bamkit/bamfilterrg.py I: dh_python3 tools:114: replacing shebang in debian/bamkit/usr/share/bamkit/bamfixflags.py I: dh_python3 tools:114: replacing shebang in debian/bamkit/usr/share/bamkit/bamgroupreads.py I: dh_python3 tools:114: replacing shebang in debian/bamkit/usr/share/bamkit/bamheadrg.py I: dh_python3 tools:114: replacing shebang in debian/bamkit/usr/share/bamkit/bamlibs.py I: dh_python3 tools:114: replacing shebang in debian/bamkit/usr/share/bamkit/bamtofastq.py dh_perl debian/rules override_dh_link make[1]: Entering directory '/build/bamkit-0.0.1+git20170413.ccd079d' dh_link for py in debian/bamkit/usr/share/bamkit/*.py ; do \ dh_link `echo ${py} | sed 's:^debian/bamkit::'` usr/bin/`basename ${py}` ; \ done make[1]: Leaving directory '/build/bamkit-0.0.1+git20170413.ccd079d' dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'bamkit' in '../bamkit_0.0.1+git20170413.ccd079d-3_all.deb'. dpkg-genbuildinfo --build=binary -O../bamkit_0.0.1+git20170413.ccd079d-3_arm64.buildinfo dpkg-genchanges --build=binary -O../bamkit_0.0.1+git20170413.ccd079d-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/26309 and its subdirectories I: Current time: Sat Apr 22 16:18:11 -12 2023 I: pbuilder-time-stamp: 1682223491 Sun Apr 23 04:18:13 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink15-arm64.debian.net. Sun Apr 23 04:18:13 UTC 2023 I: Preparing to do remote build '2' on codethink15-arm64.debian.net. Sun Apr 23 04:19:18 UTC 2023 I: Deleting $TMPDIR on codethink15-arm64.debian.net. Sun Apr 23 04:19:19 UTC 2023 I: bamkit_0.0.1+git20170413.ccd079d-3_arm64.changes: Format: 1.8 Date: Mon, 16 Aug 2021 16:59:32 +0530 Source: bamkit Binary: bamkit Architecture: all Version: 0.0.1+git20170413.ccd079d-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Shruti Sridhar Description: bamkit - tools for common BAM file manipulations Changes: bamkit (0.0.1+git20170413.ccd079d-3) unstable; urgency=medium . * Team Upload. [ Shruti Sridhar ] * Add autopkgtests * Install README as docs . [ Nilesh Patra ] * Add python3-pysam to Depends * Declare compliance with policy 4.5.1 Checksums-Sha1: 51171afdce8c652952f8a9c9b48f27aec6047bb4 14452 bamkit_0.0.1+git20170413.ccd079d-3_all.deb 7df0d6f0dcf5c9260fc660ad275378a182f3da2e 5428 bamkit_0.0.1+git20170413.ccd079d-3_arm64.buildinfo Checksums-Sha256: 05f145c6e65ba4a760dbef9cc5ebb7932bb02b2bb1f813ad71e39a16c498fea1 14452 bamkit_0.0.1+git20170413.ccd079d-3_all.deb 612750b90252d2d65adaf7d83344e9feb278e52284b47c3cbd4db1912295b113 5428 bamkit_0.0.1+git20170413.ccd079d-3_arm64.buildinfo Files: c37af90b9f946a071493dd689537589e 14452 science optional bamkit_0.0.1+git20170413.ccd079d-3_all.deb b44e5e408039bf2f800764e6daf1efae 5428 science optional bamkit_0.0.1+git20170413.ccd079d-3_arm64.buildinfo Sun Apr 23 04:19:20 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.FPdy6zUC/bamkit_0.0.1+git20170413.ccd079d-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.FPdy6zUC/bamkit_0.0.1+git20170413.ccd079d-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.FPdy6zUC/bamkit_0.0.1+git20170413.ccd079d-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.FPdy6zUC/b1/bamkit_0.0.1+git20170413.ccd079d-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.FPdy6zUC/b2/bamkit_0.0.1+git20170413.ccd079d-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.391s) 0.391s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.019s) 0.018s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Sun Apr 23 04:19:21 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Sun Apr 23 04:19:21 UTC 2023 I: bamkit from bookworm built successfully and reproducibly on arm64. Sun Apr 23 04:19:22 UTC 2023 I: Submitting .buildinfo files to external archives: Sun Apr 23 04:19:22 UTC 2023 I: Submitting 8.0K b1/bamkit_0.0.1+git20170413.ccd079d-3_arm64.buildinfo.asc Sun Apr 23 04:19:23 UTC 2023 I: Submitting 8.0K b2/bamkit_0.0.1+git20170413.ccd079d-3_arm64.buildinfo.asc Sun Apr 23 04:19:24 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Apr 23 04:19:24 UTC 2023 I: Done submitting .buildinfo files. Sun Apr 23 04:19:24 UTC 2023 I: Removing signed bamkit_0.0.1+git20170413.ccd079d-3_arm64.buildinfo.asc files: removed './b1/bamkit_0.0.1+git20170413.ccd079d-3_arm64.buildinfo.asc' removed './b2/bamkit_0.0.1+git20170413.ccd079d-3_arm64.buildinfo.asc'