Sat Apr 22 00:19:55 UTC 2023  I: starting to build trim-galore/bookworm/amd64 on jenkins on '2023-04-22 00:19'
Sat Apr 22 00:19:55 UTC 2023  I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_6/12928/console.log
Sat Apr 22 00:19:55 UTC 2023  I: Downloading source for bookworm/trim-galore=0.6.10-1
--2023-04-22 00:19:56--  http://cdn-fastly.deb.debian.org/debian/pool/main/t/trim-galore/trim-galore_0.6.10-1.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2077 (2.0K) [text/prs.lines.tag]
Saving to: ‘trim-galore_0.6.10-1.dsc’

     0K ..                                                    100%  142M=0s

2023-04-22 00:19:56 (142 MB/s) - ‘trim-galore_0.6.10-1.dsc’ saved [2077/2077]

Sat Apr 22 00:19:56 UTC 2023  I: trim-galore_0.6.10-1.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 3.0 (quilt)
Source: trim-galore
Binary: trim-galore
Architecture: all
Version: 0.6.10-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>
Homepage: https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/trim-galore
Vcs-Git: https://salsa.debian.org/med-team/trim-galore.git
Testsuite: autopkgtest
Testsuite-Triggers: build-essential
Build-Depends: debhelper-compat (= 13)
Package-List:
 trim-galore deb science optional arch=all
Checksums-Sha1:
 dd1320b1efb03f9ee57bb1ee021746a686e83ec7 26831358 trim-galore_0.6.10.orig.tar.gz
 f873bbd10ee072e43990e6ad12c2f597614864b4 10796 trim-galore_0.6.10-1.debian.tar.xz
Checksums-Sha256:
 3a4e414fc658d6eb4356f1572351204e8475a9d7dc79f6798270b57d35bda017 26831358 trim-galore_0.6.10.orig.tar.gz
 3977f48b27fe4ec7f21ae363eb22fa618d476d5b78d0826daeb94c20d2741c29 10796 trim-galore_0.6.10-1.debian.tar.xz
Files:
 ce8ea65db052838656fd3d760c17d9f9 26831358 trim-galore_0.6.10.orig.tar.gz
 c485f4f2566efcfb88ba74802ddc9452 10796 trim-galore_0.6.10-1.debian.tar.xz

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Sat Apr 22 00:19:56 UTC 2023  I: Checking whether the package is not for us
Sat Apr 22 00:19:56 UTC 2023  I: Starting 1st build on remote node ionos5-amd64.debian.net.
Sat Apr 22 00:19:56 UTC 2023  I: Preparing to do remote build '1' on ionos5-amd64.debian.net.
Sat Apr 22 00:22:07 UTC 2023  I: Deleting $TMPDIR on ionos5-amd64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Thu May 23 18:43:04 -12 2024
I: pbuilder-time-stamp: 1716532984
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [trim-galore_0.6.10-1.dsc]
I: copying [./trim-galore_0.6.10.orig.tar.gz]
I: copying [./trim-galore_0.6.10-1.debian.tar.xz]
I: Extracting source
gpgv: Signature made Sun Feb  5 08:28:48 2023 -12
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./trim-galore_0.6.10-1.dsc: no acceptable signature found
dpkg-source: info: extracting trim-galore in trim-galore-0.6.10
dpkg-source: info: unpacking trim-galore_0.6.10.orig.tar.gz
dpkg-source: info: unpacking trim-galore_0.6.10-1.debian.tar.xz
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/3620666/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='amd64'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16'
  DISTRIBUTION='bookworm'
  HOME='/root'
  HOST_ARCH='amd64'
  IFS=' 	
  '
  INVOCATION_ID='2c884b38a7a44c4bb3df7a52ef77fe1a'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='3620666'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1xo5Z03t/pbuilderrc_WbdD --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1xo5Z03t/b1 --logfile b1/build.log trim-galore_0.6.10-1.dsc'
  SUDO_GID='110'
  SUDO_UID='105'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://85.184.249.68:3128'
I: uname -a
  Linux ionos5-amd64 6.1.0-0.deb11.5-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.12-1~bpo11+1 (2023-03-05) x86_64 GNU/Linux
I: ls -l /bin
  total 5632
  -rwxr-xr-x 1 root root 1265648 Feb 12  2023 bash
  -rwxr-xr-x 3 root root   39224 Sep 18  2022 bunzip2
  -rwxr-xr-x 3 root root   39224 Sep 18  2022 bzcat
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzcmp -> bzdiff
  -rwxr-xr-x 1 root root    2225 Sep 18  2022 bzdiff
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzegrep -> bzgrep
  -rwxr-xr-x 1 root root    4893 Nov 27  2021 bzexe
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzfgrep -> bzgrep
  -rwxr-xr-x 1 root root    3775 Sep 18  2022 bzgrep
  -rwxr-xr-x 3 root root   39224 Sep 18  2022 bzip2
  -rwxr-xr-x 1 root root   14568 Sep 18  2022 bzip2recover
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzless -> bzmore
  -rwxr-xr-x 1 root root    1297 Sep 18  2022 bzmore
  -rwxr-xr-x 1 root root   44016 Sep 20  2022 cat
  -rwxr-xr-x 1 root root   68656 Sep 20  2022 chgrp
  -rwxr-xr-x 1 root root   64496 Sep 20  2022 chmod
  -rwxr-xr-x 1 root root   72752 Sep 20  2022 chown
  -rwxr-xr-x 1 root root  151152 Sep 20  2022 cp
  -rwxr-xr-x 1 root root  125640 Jan  5  2023 dash
  -rwxr-xr-x 1 root root  121904 Sep 20  2022 date
  -rwxr-xr-x 1 root root   89240 Sep 20  2022 dd
  -rwxr-xr-x 1 root root  102200 Sep 20  2022 df
  -rwxr-xr-x 1 root root  151344 Sep 20  2022 dir
  -rwxr-xr-x 1 root root   88656 Mar 22  2023 dmesg
  lrwxrwxrwx 1 root root       8 Dec 19  2022 dnsdomainname -> hostname
  lrwxrwxrwx 1 root root       8 Dec 19  2022 domainname -> hostname
  -rwxr-xr-x 1 root root   43856 Sep 20  2022 echo
  -rwxr-xr-x 1 root root      41 Jan 24  2023 egrep
  -rwxr-xr-x 1 root root   35664 Sep 20  2022 false
  -rwxr-xr-x 1 root root      41 Jan 24  2023 fgrep
  -rwxr-xr-x 1 root root   85600 Mar 22  2023 findmnt
  -rwsr-xr-x 1 root root   35128 Mar 22  2023 fusermount
  -rwxr-xr-x 1 root root  203152 Jan 24  2023 grep
  -rwxr-xr-x 2 root root    2346 Apr  9  2022 gunzip
  -rwxr-xr-x 1 root root    6447 Apr  9  2022 gzexe
  -rwxr-xr-x 1 root root   98136 Apr  9  2022 gzip
  -rwxr-xr-x 1 root root   22680 Dec 19  2022 hostname
  -rwxr-xr-x 1 root root   72824 Sep 20  2022 ln
  -rwxr-xr-x 1 root root   53024 Mar 23  2023 login
  -rwxr-xr-x 1 root root  151344 Sep 20  2022 ls
  -rwxr-xr-x 1 root root  207168 Mar 22  2023 lsblk
  -rwxr-xr-x 1 root root   97552 Sep 20  2022 mkdir
  -rwxr-xr-x 1 root root   72912 Sep 20  2022 mknod
  -rwxr-xr-x 1 root root   43952 Sep 20  2022 mktemp
  -rwxr-xr-x 1 root root   59712 Mar 22  2023 more
  -rwsr-xr-x 1 root root   59704 Mar 22  2023 mount
  -rwxr-xr-x 1 root root   18744 Mar 22  2023 mountpoint
  -rwxr-xr-x 1 root root  142968 Sep 20  2022 mv
  lrwxrwxrwx 1 root root       8 Dec 19  2022 nisdomainname -> hostname
  lrwxrwxrwx 1 root root      14 Apr  2  2023 pidof -> /sbin/killall5
  -rwxr-xr-x 1 root root   43952 Sep 20  2022 pwd
  lrwxrwxrwx 1 root root       4 Feb 12  2023 rbash -> bash
  -rwxr-xr-x 1 root root   52112 Sep 20  2022 readlink
  -rwxr-xr-x 1 root root   72752 Sep 20  2022 rm
  -rwxr-xr-x 1 root root   56240 Sep 20  2022 rmdir
  -rwxr-xr-x 1 root root   27560 Nov  2  2022 run-parts
  -rwxr-xr-x 1 root root  126424 Jan  5  2023 sed
  lrwxrwxrwx 1 root root       4 Jan  5  2023 sh -> dash
  -rwxr-xr-x 1 root root   43888 Sep 20  2022 sleep
  -rwxr-xr-x 1 root root   85008 Sep 20  2022 stty
  -rwsr-xr-x 1 root root   72000 Mar 22  2023 su
  -rwxr-xr-x 1 root root   39824 Sep 20  2022 sync
  -rwxr-xr-x 1 root root  531984 Apr  6  2023 tar
  -rwxr-xr-x 1 root root   14520 Nov  2  2022 tempfile
  -rwxr-xr-x 1 root root  109616 Sep 20  2022 touch
  -rwxr-xr-x 1 root root   35664 Sep 20  2022 true
  -rwxr-xr-x 1 root root   14568 Mar 22  2023 ulockmgr_server
  -rwsr-xr-x 1 root root   35128 Mar 22  2023 umount
  -rwxr-xr-x 1 root root   43888 Sep 20  2022 uname
  -rwxr-xr-x 2 root root    2346 Apr  9  2022 uncompress
  -rwxr-xr-x 1 root root  151344 Sep 20  2022 vdir
  -rwxr-xr-x 1 root root   72024 Mar 22  2023 wdctl
  lrwxrwxrwx 1 root root       8 Dec 19  2022 ypdomainname -> hostname
  -rwxr-xr-x 1 root root    1984 Apr  9  2022 zcat
  -rwxr-xr-x 1 root root    1678 Apr  9  2022 zcmp
  -rwxr-xr-x 1 root root    6460 Apr  9  2022 zdiff
  -rwxr-xr-x 1 root root      29 Apr  9  2022 zegrep
  -rwxr-xr-x 1 root root      29 Apr  9  2022 zfgrep
  -rwxr-xr-x 1 root root    2081 Apr  9  2022 zforce
  -rwxr-xr-x 1 root root    8103 Apr  9  2022 zgrep
  -rwxr-xr-x 1 root root    2206 Apr  9  2022 zless
  -rwxr-xr-x 1 root root    1842 Apr  9  2022 zmore
  -rwxr-xr-x 1 root root    4577 Apr  9  2022 znew
I: user script /srv/workspace/pbuilder/3620666/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13)
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19596 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} 
The following packages are RECOMMENDED but will NOT be installed:
  curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 
0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded.
Need to get 18.7 MB of archives. After unpacking 72.4 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 2 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB]
Get: 3 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB]
Get: 4 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB]
Get: 5 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB]
Get: 6 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB]
Get: 7 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB]
Get: 8 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB]
Get: 9 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB]
Get: 10 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB]
Get: 11 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB]
Get: 12 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB]
Get: 13 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get: 15 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB]
Get: 16 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 17 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB]
Get: 18 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B]
Get: 21 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 22 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 23 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB]
Get: 24 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB]
Get: 25 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB]
Get: 26 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b3 [687 kB]
Get: 27 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB]
Get: 28 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB]
Fetched 18.7 MB in 1s (28.0 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sensible-utils.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19596 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ...
Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_amd64.deb ...
Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:amd64.
Preparing to unpack .../02-libmagic1_1%3a5.44-3_amd64.deb ...
Unpacking libmagic1:amd64 (1:5.44-3) ...
Selecting previously unselected package file.
Preparing to unpack .../03-file_1%3a5.44-3_amd64.deb ...
Unpacking file (1:5.44-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../04-gettext-base_0.21-12_amd64.deb ...
Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../05-libuchardet0_0.0.7-1_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../06-groff-base_1.22.4-10_amd64.deb ...
Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_amd64.deb ...
Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../08-libpipeline1_1.5.7-1_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.7-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../09-man-db_2.11.2-2_amd64.deb ...
Unpacking man-db (2.11.2-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../10-m4_1.4.19-3_amd64.deb ...
Unpacking m4 (1.4.19-3) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../11-autoconf_2.71-3_all.deb ...
Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
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Unpacking libtool (2.4.7-5) ...
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Unpacking dh-autoreconf (20) ...
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Unpacking libarchive-zip-perl (1.68-1) ...
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Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ...
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Unpacking libicu72:amd64 (72.1-3) ...
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Unpacking debhelper (13.11.4) ...
Setting up libpipeline1:amd64 (1.5.7-1) ...
Setting up libicu72:amd64 (72.1-3) ...
Setting up bsdextrautils (2.38.1-5+b1) ...
Setting up libmagic-mgc (1:5.44-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.11.4) ...
Setting up libmagic1:amd64 (1:5.44-3) ...
Setting up gettext-base (0.21-12) ...
Setting up m4 (1.4.19-3) ...
Setting up file (1:5.44-3) ...
Setting up autotools-dev (20220109.1) ...
Setting up autopoint (0.21-12) ...
Setting up autoconf (2.71-3) ...
Setting up sensible-utils (0.0.17+nmu1) ...
Setting up libuchardet0:amd64 (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libelf1:amd64 (0.188-2.1) ...
Setting up libxml2:amd64 (2.9.14+dfsg-1.1+b3) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up gettext (0.21-12) ...
Setting up libtool (2.4.7-5) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-10) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.11.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.11.4) ...
Processing triggers for libc-bin (2.36-9) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
I: Building the package
I: Running cd /build/trim-galore-0.6.10/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../trim-galore_0.6.10-1_source.changes
dpkg-buildpackage: info: source package trim-galore
dpkg-buildpackage: info: source version 0.6.10-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
dh clean
   dh_clean
	rm -f debian/debhelper-build-stamp
	rm -rf debian/.debhelper/
	rm -f -- debian/trim-galore.substvars debian/files
	rm -fr -- debian/trim-galore/ debian/tmp/
	find .  \( \( \
		\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
	        \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
		\) -exec rm -f {} + \) -o \
		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
   create-stamp debian/debhelper-build-stamp
   dh_prep
	rm -f -- debian/trim-galore.substvars
	rm -fr -- debian/.debhelper/generated/trim-galore/ debian/trim-galore/ debian/tmp/
   dh_auto_install --destdir=debian/trim-galore/
	install -m0755 -d /build/trim-galore-0.6.10/debian/trim-galore
   dh_install
	install -m0755 -d debian/trim-galore/usr/bin
	cp --reflink=auto -a ./trim_galore debian/trim-galore/usr/bin/
   dh_installdocs
	install -m0755 -d debian/trim-galore/usr/share/doc/trim-galore
	install -p -m0644 debian/copyright debian/trim-galore/usr/share/doc/trim-galore/copyright
   dh_installchangelogs
	install -m0755 -d debian/trim-galore/usr/share/doc/trim-galore
	install -p -m0644 debian/.debhelper/generated/trim-galore/dh_installchangelogs.dch.trimmed debian/trim-galore/usr/share/doc/trim-galore/changelog.Debian
	install -p -m0644 ./CHANGELOG.md debian/trim-galore/usr/share/doc/trim-galore/changelog
   debian/rules override_dh_installexamples
make[1]: Entering directory '/build/trim-galore-0.6.10'
dh_installexamples
	install -m0755 -d debian/trim-galore/usr/share/doc/trim-galore/examples
	cp --reflink=auto -a ./test_files/4_seqs_with_Ns.fastq.gz debian/trim-galore/usr/share/doc/trim-galore/examples
	cp --reflink=auto -a ./test_files/clock_10K_R1.fastq.gz debian/trim-galore/usr/share/doc/trim-galore/examples
	cp --reflink=auto -a ./test_files/clock_10K_R2.fastq.gz debian/trim-galore/usr/share/doc/trim-galore/examples
	cp --reflink=auto -a ./test_files/colorspace_file.fastq debian/trim-galore/usr/share/doc/trim-galore/examples
	cp --reflink=auto -a ./test_files/empty_file.fastq debian/trim-galore/usr/share/doc/trim-galore/examples
	cp --reflink=auto -a ./test_files/illumina_100K.fastq.gz debian/trim-galore/usr/share/doc/trim-galore/examples
	cp --reflink=auto -a ./test_files/illumina_100K.fastq.gz_trimming_report.txt debian/trim-galore/usr/share/doc/trim-galore/examples
	cp --reflink=auto -a ./test_files/illumina_10K.fastq.gz debian/trim-galore/usr/share/doc/trim-galore/examples
	cp --reflink=auto -a ./test_files/illumina_10K.fastq.gz_trimming_report.txt debian/trim-galore/usr/share/doc/trim-galore/examples
	cp --reflink=auto -a ./test_files/illumina_10K_trimmed.fq.gz debian/trim-galore/usr/share/doc/trim-galore/examples
	cp --reflink=auto -a ./test_files/nextera_100K.fastq.gz debian/trim-galore/usr/share/doc/trim-galore/examples
	cp --reflink=auto -a ./test_files/nextera_100K.fastq.gz_trimming_report.txt debian/trim-galore/usr/share/doc/trim-galore/examples
	cp --reflink=auto -a ./test_files/smallRNA_100K.fastq.gz debian/trim-galore/usr/share/doc/trim-galore/examples
	cp --reflink=auto -a ./test_files/smallRNA_100K.fastq.gz_trimming_report.txt debian/trim-galore/usr/share/doc/trim-galore/examples
	cp --reflink=auto -a ./test_files/smallRNA_100K_R1.fastq.gz_trimming_report.txt debian/trim-galore/usr/share/doc/trim-galore/examples
	cp --reflink=auto -a ./test_files/smallRNA_100K_R2.fastq.gz debian/trim-galore/usr/share/doc/trim-galore/examples
	cp --reflink=auto -a ./test_files/smallRNA_100K_R2.fastq.gz_trimming_report.txt debian/trim-galore/usr/share/doc/trim-galore/examples
	cp --reflink=auto -a ./test_files/truncated.fq.gz debian/trim-galore/usr/share/doc/trim-galore/examples
rm -rf debian/trim-galore/usr/share/doc/trim-galore/examples/truncated.fq.gz \
debian/trim-galore/usr/share/doc/trim-galore/examples/smallRNA_100K_R2.fastq.gz \
debian/trim-galore/usr/share/doc/trim-galore/examples/*.fastq \
debian/trim-galore/usr/share/doc/trim-galore/examples/*.txt
make[1]: Leaving directory '/build/trim-galore-0.6.10'
   dh_installman
	install -m0755 -d debian/trim-galore/usr/share/man/man1/
	install -p -m0644 ./debian/trim_galore.1 debian/trim-galore/usr/share/man/man1/trim_galore.1
	man-recode --to-code UTF-8 --suffix .dh-new debian/trim-galore/usr/share/man/man1/trim_galore.1
	mv debian/trim-galore/usr/share/man/man1/trim_galore.1.dh-new debian/trim-galore/usr/share/man/man1/trim_galore.1
	chmod 0644 -- debian/trim-galore/usr/share/man/man1/trim_galore.1
   dh_lintian
	install -m0755 -d debian/trim-galore/usr/share/lintian/overrides
	install -p -m0644 debian/lintian-overrides debian/trim-galore/usr/share/lintian/overrides/trim-galore
   dh_perl
	mv debian/trim-galore.substvars.new debian/trim-galore.substvars
   dh_link
   dh_strip_nondeterminism
	Using 1675627531 as canonical time
	Normalizing debian/trim-galore/usr/share/doc/trim-galore/examples/4_seqs_with_Ns.fastq.gz using File::StripNondeterminism::handlers::gzip
	Normalizing debian/trim-galore/usr/share/doc/trim-galore/examples/illumina_10K_trimmed.fq.gz using File::StripNondeterminism::handlers::gzip
	Normalizing debian/trim-galore/usr/share/doc/trim-galore/examples/clock_10K_R1.fastq.gz using File::StripNondeterminism::handlers::gzip
	Normalizing debian/trim-galore/usr/share/doc/trim-galore/examples/smallRNA_100K.fastq.gz using File::StripNondeterminism::handlers::gzip
	Normalizing debian/trim-galore/usr/share/doc/trim-galore/examples/illumina_10K.fastq.gz using File::StripNondeterminism::handlers::gzip
	Normalizing debian/trim-galore/usr/share/doc/trim-galore/examples/clock_10K_R2.fastq.gz using File::StripNondeterminism::handlers::gzip
	Normalizing debian/trim-galore/usr/share/doc/trim-galore/examples/nextera_100K.fastq.gz using File::StripNondeterminism::handlers::gzip
	Normalizing debian/trim-galore/usr/share/doc/trim-galore/examples/illumina_100K.fastq.gz using File::StripNondeterminism::handlers::gzip
   dh_compress
	cd debian/trim-galore
	chmod a-x usr/share/doc/trim-galore/changelog usr/share/doc/trim-galore/changelog.Debian usr/share/man/man1/trim_galore.1
	gzip -9nf usr/share/doc/trim-galore/changelog usr/share/doc/trim-galore/changelog.Debian usr/share/man/man1/trim_galore.1
	cd '/build/trim-galore-0.6.10'
   dh_fixperms
	find debian/trim-galore ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
	find debian/trim-galore/usr/share/doc -type f -a -true -a ! -regex 'debian/trim-galore/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/trim-galore/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
	find debian/trim-galore/usr/share/man debian/trim-galore/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/trim-galore -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/trim-galore/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
   dh_missing
   dh_installdeb
	install -m0755 -d debian/trim-galore/DEBIAN
   dh_gencontrol
	install -m0755 -d debian/trim-galore/DEBIAN
	echo misc:Depends= >> debian/trim-galore.substvars
	echo misc:Pre-Depends= >> debian/trim-galore.substvars
	dpkg-gencontrol -ptrim-galore -ldebian/changelog -Tdebian/trim-galore.substvars -Pdebian/trim-galore
	chmod 0644 -- debian/trim-galore/DEBIAN/control
   dh_md5sums
	install -m0755 -d debian/trim-galore/DEBIAN
	cd debian/trim-galore >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
	chmod 0644 -- debian/trim-galore/DEBIAN/md5sums
   dh_builddeb
	dpkg-deb --root-owner-group --build debian/trim-galore ..
dpkg-deb: building package 'trim-galore' in '../trim-galore_0.6.10-1_all.deb'.
 dpkg-genbuildinfo --build=binary -O../trim-galore_0.6.10-1_amd64.buildinfo
 dpkg-genchanges --build=binary -O../trim-galore_0.6.10-1_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/3620666 and its subdirectories
I: Current time: Thu May 23 18:45:08 -12 2024
I: pbuilder-time-stamp: 1716533108
Sat Apr 22 00:22:07 UTC 2023  I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net.
Sat Apr 22 00:22:07 UTC 2023  I: Preparing to do remote build '2' on ionos11-amd64.debian.net.
Sat Apr 22 00:23:16 UTC 2023  I: Deleting $TMPDIR on ionos11-amd64.debian.net.
Sat Apr 22 00:23:16 UTC 2023  I: trim-galore_0.6.10-1_amd64.changes:
Format: 1.8
Date: Sun, 05 Feb 2023 21:05:31 +0100
Source: trim-galore
Binary: trim-galore
Architecture: all
Version: 0.6.10-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 trim-galore - automate quality and adapter trimming for DNA sequencing
Changes:
 trim-galore (0.6.10-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.6.2 (routine-update)
Checksums-Sha1:
 0c09f9962749566fea5a997929249e63e4d77eaf 17819680 trim-galore_0.6.10-1_all.deb
 add9f65be03cfccc9ca5f04ff4e1215c49e27a3c 4867 trim-galore_0.6.10-1_amd64.buildinfo
Checksums-Sha256:
 76b6a5b9ceed3089b667a2636393ad49998e85b01bf10e63ca37f53105278de3 17819680 trim-galore_0.6.10-1_all.deb
 712d95e3b5854a0d2c8356dd5af2a73636dafedec6c7483ff46041eff2978203 4867 trim-galore_0.6.10-1_amd64.buildinfo
Files:
 e012e0e275f1f0018bdc6a632f7a5ba4 17819680 science optional trim-galore_0.6.10-1_all.deb
 2bffc4c29ff72a64e67df43b60159ca5 4867 science optional trim-galore_0.6.10-1_amd64.buildinfo
Sat Apr 22 00:23:18 UTC 2023  I: diffoscope 240 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.1xo5Z03t/trim-galore_0.6.10-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.1xo5Z03t/trim-galore_0.6.10-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.1xo5Z03t/trim-galore_0.6.10-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.1xo5Z03t/b1/trim-galore_0.6.10-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.1xo5Z03t/b2/trim-galore_0.6.10-1_amd64.changes

## command (total time: 0.000s)
       0.000s      1 call     cmp (internal)

## has_same_content_as (total time: 0.000s)
       0.000s      1 call     abc.DotChangesFile

## main (total time: 0.709s)
       0.709s      2 calls    outputs
       0.000s      1 call     cleanup

## recognizes (total time: 0.281s)
       0.281s     12 calls    diffoscope.comparators.binary.FilesystemFile
       0.000s     10 calls    abc.DotChangesFile

## specialize (total time: 0.001s)
       0.001s      1 call     specialize
Sat Apr 22 00:23:23 UTC 2023  I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists.
Sat Apr 22 00:23:23 UTC 2023  I: trim-galore from bookworm built successfully and reproducibly on amd64.
Sat Apr 22 00:23:25 UTC 2023  I: Submitting .buildinfo files to external archives:
Sat Apr 22 00:23:25 UTC 2023  I: Submitting 8.0K	b1/trim-galore_0.6.10-1_amd64.buildinfo.asc
Sat Apr 22 00:23:26 UTC 2023  I: Submitting 8.0K	b2/trim-galore_0.6.10-1_amd64.buildinfo.asc
Sat Apr 22 00:23:26 UTC 2023  I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Sat Apr 22 00:23:26 UTC 2023  I: Done submitting .buildinfo files.
Sat Apr 22 00:23:26 UTC 2023  I: Removing signed trim-galore_0.6.10-1_amd64.buildinfo.asc files:
removed './b1/trim-galore_0.6.10-1_amd64.buildinfo.asc'
removed './b2/trim-galore_0.6.10-1_amd64.buildinfo.asc'