Sun Apr 23 01:33:21 UTC 2023 I: starting to build reprof/bookworm/amd64 on jenkins on '2023-04-23 01:33' Sun Apr 23 01:33:21 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_5/543/console.log Sun Apr 23 01:33:21 UTC 2023 I: Downloading source for bookworm/reprof=1.0.1-8 --2023-04-23 01:33:21-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/reprof/reprof_1.0.1-8.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2219 (2.2K) [text/prs.lines.tag] Saving to: ‘reprof_1.0.1-8.dsc’ 0K .. 100% 501K=0.004s 2023-04-23 01:33:21 (501 KB/s) - ‘reprof_1.0.1-8.dsc’ saved [2219/2219] Sun Apr 23 01:33:21 UTC 2023 I: reprof_1.0.1-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: reprof Binary: reprof, librg-reprof-bundle-perl Architecture: all Version: 1.0.1-8 Maintainer: Debian Med Packaging Team Uploaders: Peter Hoenigschmid , Laszlo Kajan , Andreas Tille Homepage: https://rostlab.org/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/reprof Vcs-Git: https://salsa.debian.org/med-team/reprof.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, libai-fann-perl, pkg-perl-autopkgtest, pkg-perl-autopkgtest-heavy Build-Depends: debhelper-compat (= 13), libmodule-build-perl, debhelper Package-List: librg-reprof-bundle-perl deb perl optional arch=all reprof deb science optional arch=all Checksums-Sha1: 7f85dbf7cba54eefde3189cce1eee150910f3c6c 9041799 reprof_1.0.1.orig.tar.gz 886e3fd8deca11a7cbe7f81895d1964e876b32f6 5720 reprof_1.0.1-8.debian.tar.xz Checksums-Sha256: a6ad4a0595e6a152612c9bcd6ab86f9f4c7a649c5aaed7e06bde611e2e9346c2 9041799 reprof_1.0.1.orig.tar.gz 727a845ce46e187c51461d3dae643a78ed8cb65e01fdfaf52604e1d71747811d 5720 reprof_1.0.1-8.debian.tar.xz Files: 77e6f917af1667e93f5bae7c23f78d54 9041799 reprof_1.0.1.orig.tar.gz 334f58a8686746355f631580ddfe27d3 5720 reprof_1.0.1-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmHnG28RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFb0w/+KlkDdj9qAZdDHecVvh3NImIffUj/TEdO 3VhVaDNxudWcPVVBEivxc1CPd/nWQoWy6E6B7t2is3gruDywmIpvfbXsECHdWv66 M+L5VqqgCGMEBaXpE59d+jYZi14xadVZNg7lmC+F38ock5mnmJ/F5nCzrFtvyPW4 f44kyotJZPdnYX9JIxgY+6ECS/Vgjp1kO5Z04neEfsbJ0CUooLCGzbFtbGaJaf+h aGBl7XAWe2XX3XRGSkWaM4Xb9ghqB8vkUiHTcjvVeeRAB2VYVf+1iv9YSS1O0nit dR0g1NW0QdEkHDxfLa99OBTQqIF6+RksWpPg4VNf2RzCdMjin6+xxLgUoTVfc18e imAVEpvbOlF54z/IjBQele6lnyusBVqgCp/ghcGb2cGjcxql/A9EX7rlupb7WGpP 2oPER+dM76uteoZWsd/vrIp6uP0RxPyq6u5xz0sNulDZnz7uwyu24gpJuldEcD3z wq3lybmG7Y5mv3mjg1e0HOPU/T8rrCh69guiJgVtQviRbxN40lfg48t3sTcFqKyg M4rr/ln7TJvfymhB5Gn0XPVvhLbk/L+W9+vbDeSekAMW7Es/l2h268qyilxU+tRI bayIAq5Tlwetlhc+7uqf5L1dm09woqbM9wmw+3SeOAZYI7v7sisgOQ6yfwOSK7qH uFBu7slaYVI= =ij4/ -----END PGP SIGNATURE----- Sun Apr 23 01:33:21 UTC 2023 I: Checking whether the package is not for us Sun Apr 23 01:33:21 UTC 2023 I: Starting 1st build on remote node ionos11-amd64.debian.net. Sun Apr 23 01:33:21 UTC 2023 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Sun Apr 23 01:34:59 UTC 2023 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Apr 22 13:33:22 -12 2023 I: pbuilder-time-stamp: 1682213602 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [reprof_1.0.1-8.dsc] I: copying [./reprof_1.0.1.orig.tar.gz] I: copying [./reprof_1.0.1-8.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Jan 18 07:56:31 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./reprof_1.0.1-8.dsc: no acceptable signature found dpkg-source: info: extracting reprof in reprof-1.0.1 dpkg-source: info: unpacking reprof_1.0.1.orig.tar.gz dpkg-source: info: unpacking reprof_1.0.1-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_pp-popcon.patch dpkg-source: info: applying update-model-files.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3259106/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='ce314ba395074795b01cbcccd4ba0fbc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3259106' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.i2PN3uLA/pbuilderrc_8XVm --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.i2PN3uLA/b1 --logfile b1/build.log reprof_1.0.1-8.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Feb 12 08:05 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Feb 12 08:05 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 04:31 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar -rwxr-xr-x 1 root root 14520 Nov 2 04:31 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/3259106/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libmodule-build-perl, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libmodule-build-perl; however: Package libmodule-build-perl is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libmodule-build-perl{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl libmodule-signature-perl libpod-readme-perl libsoftware-license-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 19.0 MB of archives. After unpacking 73.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b3 [687 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libmodule-build-perl all 0.423200-1 [253 kB] Fetched 19.0 MB in 0s (54.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../02-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_amd64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../22-libelf1_0.188-2.1_amd64.deb ... Unpacking libelf1:amd64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_amd64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../24-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.1+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.1+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-12_amd64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package libmodule-build-perl. Preparing to unpack .../30-libmodule-build-perl_0.423200-1_all.deb ... Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.423200-1) ... Setting up libpipeline1:amd64 (1.5.7-1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libmodule-build-perl (0.423200-1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-12) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.1+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reprof-1.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../reprof_1.0.1-8_source.changes dpkg-buildpackage: info: source package reprof dpkg-buildpackage: info: source version 1.0.1-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_testdir dh_auto_clean dh_autoreconf_clean debian/rules override_dh_clean make[1]: Entering directory '/build/reprof-1.0.1' find . -name Makefile -delete # restore reprof.spec which is removed in the build process if [ ! -e reprof.spec ] ; then sed 's/@VERSION@/1.0.1/' reprof.spec.in > reprof.spec ; fi dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/reprof.substvars debian/librg-reprof-bundle-perl.substvars debian/files rm -fr -- debian/reprof/ debian/tmp/ debian/librg-reprof-bundle-perl/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) make[1]: Leaving directory '/build/reprof-1.0.1' debian/rules binary dh binary dh_testdir dh_update_autotools_config dh_autoreconf find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating Build.PL config.status: creating examples/Makefile config.status: creating lib/Makefile config.status: creating lib/RG/Makefile config.status: creating lib/RG/Reprof/Makefile config.status: creating reprof.spec config.status: creating scripts/Makefile config.status: creating share/Makefile debian/rules override_dh_auto_build make[1]: Entering directory '/build/reprof-1.0.1' # Build process somehow removes lib/RG/Reprof.pm # make sure it exists to be able to build twice in a row dh_auto_build make -j15 make[2]: Entering directory '/build/reprof-1.0.1' Making all in examples make[3]: Entering directory '/build/reprof-1.0.1/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reprof-1.0.1/examples' Making all in scripts make[3]: Entering directory '/build/reprof-1.0.1/scripts' sed -e 's|__bindir__|/usr/bin|g;s|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/reprof|g;s|__pkgdatadir__|/usr/share/reprof|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|1.0.1|g;' "reprof" | \ pod2man -c 'User Commands' -r "1.0.1" -name REPROF > "reprof.1" make[3]: Leaving directory '/build/reprof-1.0.1/scripts' Making all in lib make[3]: Entering directory '/build/reprof-1.0.1/lib' Making all in RG make[4]: Entering directory '/build/reprof-1.0.1/lib/RG' Making all in Reprof make[5]: Entering directory '/build/reprof-1.0.1/lib/RG/Reprof' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/build/reprof-1.0.1/lib/RG/Reprof' make[5]: Entering directory '/build/reprof-1.0.1/lib/RG' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/build/reprof-1.0.1/lib/RG' make[4]: Leaving directory '/build/reprof-1.0.1/lib/RG' make[4]: Entering directory '/build/reprof-1.0.1/lib' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/build/reprof-1.0.1/lib' make[3]: Leaving directory '/build/reprof-1.0.1/lib' Making all in share make[3]: Entering directory '/build/reprof-1.0.1/share' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reprof-1.0.1/share' make[3]: Entering directory '/build/reprof-1.0.1' perl Build.PL installdirs=vendor && perl Build && touch build-stamp Can't find dist packages without a MANIFEST file Run 'Build manifest' to generate one WARNING: Possible missing or corrupt 'MANIFEST' file. Nothing to enter for 'provides' field in metafile. Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'reprof' version '1.0.1' Building reprof make[3]: Leaving directory '/build/reprof-1.0.1' make[2]: Leaving directory '/build/reprof-1.0.1' if [ ! -e lib/RG/Reprof.pm ] ; then cp lib/RG/Reprof.pm.mk lib/RG/Reprof.pm ; fi make[1]: Leaving directory '/build/reprof-1.0.1' dh_auto_test make -j15 check "TESTSUITEFLAGS=-j15 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reprof-1.0.1' Making check in examples make[2]: Entering directory '/build/reprof-1.0.1/examples' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reprof-1.0.1/examples' Making check in scripts make[2]: Entering directory '/build/reprof-1.0.1/scripts' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reprof-1.0.1/scripts' Making check in lib make[2]: Entering directory '/build/reprof-1.0.1/lib' Making check in RG make[3]: Entering directory '/build/reprof-1.0.1/lib/RG' Making check in Reprof make[4]: Entering directory '/build/reprof-1.0.1/lib/RG/Reprof' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/reprof-1.0.1/lib/RG/Reprof' make[4]: Entering directory '/build/reprof-1.0.1/lib/RG' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/build/reprof-1.0.1/lib/RG' make[3]: Leaving directory '/build/reprof-1.0.1/lib/RG' make[3]: Entering directory '/build/reprof-1.0.1/lib' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/reprof-1.0.1/lib' make[2]: Leaving directory '/build/reprof-1.0.1/lib' Making check in share make[2]: Entering directory '/build/reprof-1.0.1/share' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reprof-1.0.1/share' make[2]: Entering directory '/build/reprof-1.0.1' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/build/reprof-1.0.1' make[1]: Leaving directory '/build/reprof-1.0.1' rm -fr -- /tmp/dh-xdg-rundir-YbEUoust create-stamp debian/debhelper-build-stamp dh_testroot dh_prep rm -f -- debian/reprof.substvars debian/librg-reprof-bundle-perl.substvars rm -fr -- debian/.debhelper/generated/reprof/ debian/reprof/ debian/tmp/ debian/.debhelper/generated/librg-reprof-bundle-perl/ debian/librg-reprof-bundle-perl/ dh_installdirs rm -f debian/librg-reprof-bundle-perl.debhelper.log debian/reprof.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/reprof-1.0.1' # The following will run: perl Build install dh_auto_install install -m0755 -d /build/reprof-1.0.1/debian/tmp make -j15 install DESTDIR=/build/reprof-1.0.1/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/reprof-1.0.1' Making install in examples make[3]: Entering directory '/build/reprof-1.0.1/examples' make[4]: Entering directory '/build/reprof-1.0.1/examples' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/reprof-1.0.1/debian/tmp/usr/share/doc/reprof/examples' /usr/bin/install -c -m 644 ./example.Q ./example.Q.reprof ./example.fasta ./example.fasta.reprof ./mutations.txt ./mutations_example.Q.reprof ./mutations_example.Q.reprof_F172P ./mutations_example.Q.reprof_M1Q ./mutations_example.Q.reprof_N34Y ./mutations_example.Q.reprof_ORI '/build/reprof-1.0.1/debian/tmp/usr/share/doc/reprof/examples' make[4]: Leaving directory '/build/reprof-1.0.1/examples' make[3]: Leaving directory '/build/reprof-1.0.1/examples' Making install in scripts make[3]: Entering directory '/build/reprof-1.0.1/scripts' make[4]: Entering directory '/build/reprof-1.0.1/scripts' /bin/mkdir -p '/build/reprof-1.0.1/debian/tmp/usr/bin' /bin/mkdir -p '/build/reprof-1.0.1/debian/tmp/usr/share/man/man1' /usr/bin/install -c reprof '/build/reprof-1.0.1/debian/tmp/usr/bin' /usr/bin/install -c -m 644 reprof.1 '/build/reprof-1.0.1/debian/tmp/usr/share/man/man1' make install-exec-hook make[5]: Entering directory '/build/reprof-1.0.1/scripts' sed -i -e 's|__bindir__|/usr/bin|g;s|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/reprof|g;s|__pkgdatadir__|/usr/share/reprof|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|1.0.1|g;' "/build/reprof-1.0.1/debian/tmp/usr/bin/reprof" make install-data-hook make[5]: Leaving directory '/build/reprof-1.0.1/scripts' make[5]: Entering directory '/build/reprof-1.0.1/scripts' sed -i -e 's|__bindir__|/usr/bin|g;s|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/reprof|g;s|__pkgdatadir__|/usr/share/reprof|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|1.0.1|g;' "/build/reprof-1.0.1/debian/tmp/usr/share/man/man1/reprof.1" make[5]: Leaving directory '/build/reprof-1.0.1/scripts' make[4]: Leaving directory '/build/reprof-1.0.1/scripts' make[3]: Leaving directory '/build/reprof-1.0.1/scripts' Making install in lib make[3]: Entering directory '/build/reprof-1.0.1/lib' Making install in RG make[4]: Entering directory '/build/reprof-1.0.1/lib/RG' Making install in Reprof make[5]: Entering directory '/build/reprof-1.0.1/lib/RG/Reprof' make[6]: Entering directory '/build/reprof-1.0.1/lib/RG/Reprof' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/reprof-1.0.1/lib/RG/Reprof' make[5]: Leaving directory '/build/reprof-1.0.1/lib/RG/Reprof' make[5]: Entering directory '/build/reprof-1.0.1/lib/RG' make[6]: Entering directory '/build/reprof-1.0.1/lib/RG' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/reprof-1.0.1/lib/RG' make[5]: Leaving directory '/build/reprof-1.0.1/lib/RG' make[4]: Leaving directory '/build/reprof-1.0.1/lib/RG' make[4]: Entering directory '/build/reprof-1.0.1/lib' make[5]: Entering directory '/build/reprof-1.0.1/lib' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reprof-1.0.1/lib' make[4]: Leaving directory '/build/reprof-1.0.1/lib' make[3]: Leaving directory '/build/reprof-1.0.1/lib' Making install in share make[3]: Entering directory '/build/reprof-1.0.1/share' make[4]: Entering directory '/build/reprof-1.0.1/share' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/reprof-1.0.1/debian/tmp/usr/share/reprof' /usr/bin/install -c -m 644 ./a.model ./b.model ./bb.model ./bu.model ./fa.model ./fb.model ./fbb.model ./fbu.model ./fu.model ./fub.model ./fuu.model ./u.model ./ub.model ./uu.model ./a.features ./b.features ./bb.features ./bu.features ./fa.features ./fb.features ./fbb.features ./fbu.features ./fu.features ./fub.features ./fuu.features ./u.features ./ub.features ./uu.features '/build/reprof-1.0.1/debian/tmp/usr/share/reprof' make[4]: Leaving directory '/build/reprof-1.0.1/share' make[3]: Leaving directory '/build/reprof-1.0.1/share' make[3]: Entering directory '/build/reprof-1.0.1' make[4]: Entering directory '/build/reprof-1.0.1' make[4]: Nothing to be done for 'install-exec-am'. perl Build install destdir=/build/reprof-1.0.1/debian/tmp create_packlist=0 Building reprof Installing /build/reprof-1.0.1/debian/tmp/usr/share/perl5/RG/Reprof.pm Installing /build/reprof-1.0.1/debian/tmp/usr/share/perl5/RG/Reprof/fasta.pm Installing /build/reprof-1.0.1/debian/tmp/usr/share/perl5/RG/Reprof/blastPsiMat.pm Installing /build/reprof-1.0.1/debian/tmp/usr/share/perl5/RG/Reprof/Converter.pm Installing /build/reprof-1.0.1/debian/tmp/usr/share/man/man3/RG::Reprof.3pm make[4]: Leaving directory '/build/reprof-1.0.1' make[3]: Leaving directory '/build/reprof-1.0.1' make[2]: Leaving directory '/build/reprof-1.0.1' # But we also need this to get the correct script DESTDIR=/build/reprof-1.0.1/debian/tmp make install make[2]: Entering directory '/build/reprof-1.0.1' Making install in examples make[3]: Entering directory '/build/reprof-1.0.1/examples' make[4]: Entering directory '/build/reprof-1.0.1/examples' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/reprof-1.0.1/debian/tmp/usr/share/doc/reprof/examples' /usr/bin/install -c -m 644 ./example.Q ./example.Q.reprof ./example.fasta ./example.fasta.reprof ./mutations.txt ./mutations_example.Q.reprof ./mutations_example.Q.reprof_F172P ./mutations_example.Q.reprof_M1Q ./mutations_example.Q.reprof_N34Y ./mutations_example.Q.reprof_ORI '/build/reprof-1.0.1/debian/tmp/usr/share/doc/reprof/examples' make[4]: Leaving directory '/build/reprof-1.0.1/examples' make[3]: Leaving directory '/build/reprof-1.0.1/examples' Making install in scripts make[3]: Entering directory '/build/reprof-1.0.1/scripts' make[4]: Entering directory '/build/reprof-1.0.1/scripts' /bin/mkdir -p '/build/reprof-1.0.1/debian/tmp/usr/bin' /usr/bin/install -c reprof '/build/reprof-1.0.1/debian/tmp/usr/bin' make install-exec-hook make[5]: Entering directory '/build/reprof-1.0.1/scripts' sed -i -e 's|__bindir__|/usr/bin|g;s|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/reprof|g;s|__pkgdatadir__|/usr/share/reprof|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|1.0.1|g;' "/build/reprof-1.0.1/debian/tmp/usr/bin/reprof" make[5]: Leaving directory '/build/reprof-1.0.1/scripts' /bin/mkdir -p '/build/reprof-1.0.1/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 reprof.1 '/build/reprof-1.0.1/debian/tmp/usr/share/man/man1' make install-data-hook make[5]: Entering directory '/build/reprof-1.0.1/scripts' sed -i -e 's|__bindir__|/usr/bin|g;s|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/reprof|g;s|__pkgdatadir__|/usr/share/reprof|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|1.0.1|g;' "/build/reprof-1.0.1/debian/tmp/usr/share/man/man1/reprof.1" make[5]: Leaving directory '/build/reprof-1.0.1/scripts' make[4]: Leaving directory '/build/reprof-1.0.1/scripts' make[3]: Leaving directory '/build/reprof-1.0.1/scripts' Making install in lib make[3]: Entering directory '/build/reprof-1.0.1/lib' Making install in RG make[4]: Entering directory '/build/reprof-1.0.1/lib/RG' Making install in Reprof make[5]: Entering directory '/build/reprof-1.0.1/lib/RG/Reprof' make[6]: Entering directory '/build/reprof-1.0.1/lib/RG/Reprof' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/reprof-1.0.1/lib/RG/Reprof' make[5]: Leaving directory '/build/reprof-1.0.1/lib/RG/Reprof' make[5]: Entering directory '/build/reprof-1.0.1/lib/RG' make[6]: Entering directory '/build/reprof-1.0.1/lib/RG' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/reprof-1.0.1/lib/RG' make[5]: Leaving directory '/build/reprof-1.0.1/lib/RG' make[4]: Leaving directory '/build/reprof-1.0.1/lib/RG' make[4]: Entering directory '/build/reprof-1.0.1/lib' make[5]: Entering directory '/build/reprof-1.0.1/lib' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reprof-1.0.1/lib' make[4]: Leaving directory '/build/reprof-1.0.1/lib' make[3]: Leaving directory '/build/reprof-1.0.1/lib' Making install in share make[3]: Entering directory '/build/reprof-1.0.1/share' make[4]: Entering directory '/build/reprof-1.0.1/share' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/reprof-1.0.1/debian/tmp/usr/share/reprof' /usr/bin/install -c -m 644 ./a.model ./b.model ./bb.model ./bu.model ./fa.model ./fb.model ./fbb.model ./fbu.model ./fu.model ./fub.model ./fuu.model ./u.model ./ub.model ./uu.model ./a.features ./b.features ./bb.features ./bu.features ./fa.features ./fb.features ./fbb.features ./fbu.features ./fu.features ./fub.features ./fuu.features ./u.features ./ub.features ./uu.features '/build/reprof-1.0.1/debian/tmp/usr/share/reprof' make[4]: Leaving directory '/build/reprof-1.0.1/share' make[3]: Leaving directory '/build/reprof-1.0.1/share' make[3]: Entering directory '/build/reprof-1.0.1' make[4]: Entering directory '/build/reprof-1.0.1' make[4]: Nothing to be done for 'install-exec-am'. perl Build install destdir=/build/reprof-1.0.1/debian/tmp create_packlist=0 Building reprof make[4]: Leaving directory '/build/reprof-1.0.1' make[3]: Leaving directory '/build/reprof-1.0.1' make[2]: Leaving directory '/build/reprof-1.0.1' make[1]: Leaving directory '/build/reprof-1.0.1' dh_install install -m0755 -d debian/reprof//usr cp --reflink=auto -a debian/tmp/usr/bin debian/reprof//usr/ install -m0755 -d debian/reprof//usr/share/doc/reprof cp --reflink=auto -a debian/tmp/usr/share/doc/reprof/examples debian/reprof//usr/share/doc/reprof/ install -m0755 -d debian/reprof//usr/share/man cp --reflink=auto -a debian/tmp/usr/share/man/man1 debian/reprof//usr/share/man/ install -m0755 -d debian/librg-reprof-bundle-perl//usr/share cp --reflink=auto -a debian/tmp/usr/share/perl5 debian/tmp/usr/share/reprof debian/librg-reprof-bundle-perl//usr/share/ install -m0755 -d debian/librg-reprof-bundle-perl//usr/share/man cp --reflink=auto -a debian/tmp/usr/share/man/man3 debian/librg-reprof-bundle-perl//usr/share/man/ dh_installdocs install -m0755 -d debian/reprof/usr/share/doc/reprof cp --reflink=auto -a ./debian/README.test debian/reprof/usr/share/doc/reprof cp --reflink=auto -a ./debian/tests/installation-test debian/reprof/usr/share/doc/reprof cp --reflink=auto -a ./debian/tests/test-models.t debian/reprof/usr/share/doc/reprof chmod -R u\+rw,go=rX debian/reprof/usr/share/doc install -p -m0644 debian/copyright debian/reprof/usr/share/doc/reprof/copyright install -m0755 -d debian/librg-reprof-bundle-perl/usr/share/doc/librg-reprof-bundle-perl install -p -m0644 debian/copyright debian/librg-reprof-bundle-perl/usr/share/doc/librg-reprof-bundle-perl/copyright dh_installchangelogs install -m0755 -d debian/librg-reprof-bundle-perl/usr/share/doc/librg-reprof-bundle-perl install -p -m0644 debian/.debhelper/generated/librg-reprof-bundle-perl/dh_installchangelogs.dch.trimmed debian/librg-reprof-bundle-perl/usr/share/doc/librg-reprof-bundle-perl/changelog.Debian install -p -m0644 ./ChangeLog debian/librg-reprof-bundle-perl/usr/share/doc/librg-reprof-bundle-perl/changelog install -m0755 -d debian/reprof/usr/share/doc/reprof install -p -m0644 debian/.debhelper/generated/reprof/dh_installchangelogs.dch.trimmed debian/reprof/usr/share/doc/reprof/changelog.Debian install -p -m0644 ./ChangeLog debian/reprof/usr/share/doc/reprof/changelog dh_installexamples dh_installman man-recode --to-code UTF-8 --suffix .dh-new debian/reprof/usr/share/man/man1/reprof.1 man-recode --to-code UTF-8 --suffix .dh-new debian/librg-reprof-bundle-perl/usr/share/man/man3/RG::Reprof.3pm mv debian/librg-reprof-bundle-perl/usr/share/man/man3/RG::Reprof.3pm.dh-new debian/librg-reprof-bundle-perl/usr/share/man/man3/RG::Reprof.3pm chmod 0644 -- debian/librg-reprof-bundle-perl/usr/share/man/man3/RG::Reprof.3pm mv debian/reprof/usr/share/man/man1/reprof.1.dh-new debian/reprof/usr/share/man/man1/reprof.1 chmod 0644 -- debian/reprof/usr/share/man/man1/reprof.1 dh_installcatalogs dh_installcron dh_installdebconf install -m0755 -d debian/reprof/DEBIAN install -m0755 -d debian/librg-reprof-bundle-perl/DEBIAN dh_installemacsen dh_installifupdown dh_installinfo dh_installinit dh_installtmpfiles dh_installsystemd dh_installsystemduser dh_installmenu dh_installmime dh_installmodules dh_installlogcheck dh_installlogrotate dh_installpam dh_installppp dh_installudev dh_installgsettings dh_installinitramfs dh_installalternatives dh_bugfiles dh_ucf dh_lintian dh_icons dh_perl mv debian/reprof.substvars.new debian/reprof.substvars mv debian/librg-reprof-bundle-perl.substvars.new debian/librg-reprof-bundle-perl.substvars rmdir --ignore-fail-on-non-empty --parents debian/librg-reprof-bundle-perl/usr/share/perl5 dh_usrlocal dh_link dh_installwm dh_installxfonts dh_strip_nondeterminism rm -f debian/librg-reprof-bundle-perl.debhelper.log debian/reprof.debhelper.log debian/rules override_dh_compress make[1]: Entering directory '/build/reprof-1.0.1' dh_compress -Xexample.Q cd debian/reprof cd debian/librg-reprof-bundle-perl chmod a-x usr/share/doc/librg-reprof-bundle-perl/changelog usr/share/doc/librg-reprof-bundle-perl/changelog.Debian usr/share/man/man3/RG::Reprof.3pm chmod a-x usr/share/doc/reprof/changelog usr/share/doc/reprof/changelog.Debian usr/share/man/man1/reprof.1 gzip -9nf usr/share/doc/librg-reprof-bundle-perl/changelog usr/share/doc/librg-reprof-bundle-perl/changelog.Debian usr/share/man/man3/RG::Reprof.3pm gzip -9nf usr/share/doc/reprof/changelog usr/share/doc/reprof/changelog.Debian usr/share/man/man1/reprof.1 cd '/build/reprof-1.0.1' cd '/build/reprof-1.0.1' make[1]: Leaving directory '/build/reprof-1.0.1' dh_fixperms find debian/reprof ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/librg-reprof-bundle-perl ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/reprof/usr/share/doc -type f -a -true -a ! -regex 'debian/reprof/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/librg-reprof-bundle-perl/usr/share/doc -type f -a -true -a ! -regex 'debian/librg-reprof-bundle-perl/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/librg-reprof-bundle-perl/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/reprof/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/librg-reprof-bundle-perl/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/reprof/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/librg-reprof-bundle-perl/usr/share/perl5 -type f -perm -5 -name '*.pm' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a-X find debian/librg-reprof-bundle-perl -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/reprof -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/reprof/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_installdeb install -m0755 -d debian/reprof/DEBIAN install -m0755 -d debian/librg-reprof-bundle-perl/DEBIAN dh_gencontrol install -m0755 -d debian/reprof/DEBIAN echo misc:Depends= >> debian/reprof.substvars echo misc:Pre-Depends= >> debian/reprof.substvars dpkg-gencontrol -preprof -ldebian/changelog -Tdebian/reprof.substvars -Pdebian/reprof install -m0755 -d debian/librg-reprof-bundle-perl/DEBIAN echo misc:Depends= >> debian/librg-reprof-bundle-perl.substvars echo misc:Pre-Depends= >> debian/librg-reprof-bundle-perl.substvars dpkg-gencontrol -plibrg-reprof-bundle-perl -ldebian/changelog -Tdebian/librg-reprof-bundle-perl.substvars -Pdebian/librg-reprof-bundle-perl chmod 0644 -- debian/reprof/DEBIAN/control chmod 0644 -- debian/librg-reprof-bundle-perl/DEBIAN/control dh_md5sums install -m0755 -d debian/librg-reprof-bundle-perl/DEBIAN install -m0755 -d debian/reprof/DEBIAN cd debian/librg-reprof-bundle-perl >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/reprof >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/reprof/DEBIAN/md5sums chmod 0644 -- debian/librg-reprof-bundle-perl/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/reprof .. dpkg-deb --root-owner-group --build debian/librg-reprof-bundle-perl .. dpkg-deb: building package 'reprof' in '../reprof_1.0.1-8_all.deb'. dpkg-deb: building package 'librg-reprof-bundle-perl' in '../librg-reprof-bundle-perl_1.0.1-8_all.deb'. dpkg-genbuildinfo --build=binary -O../reprof_1.0.1-8_amd64.buildinfo dpkg-genchanges --build=binary -O../reprof_1.0.1-8_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3259106 and its subdirectories I: Current time: Sat Apr 22 13:34:59 -12 2023 I: pbuilder-time-stamp: 1682213699 Sun Apr 23 01:35:00 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Sun Apr 23 01:35:00 UTC 2023 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Sun Apr 23 01:36:17 UTC 2023 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Sun Apr 23 01:36:17 UTC 2023 I: reprof_1.0.1-8_amd64.changes: Format: 1.8 Date: Tue, 18 Jan 2022 20:49:55 +0100 Source: reprof Binary: librg-reprof-bundle-perl reprof Architecture: all Version: 1.0.1-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: librg-reprof-bundle-perl - protein secondary structure and accessibility predictor (perl mod reprof - protein secondary structure and accessibility predictor Changes: reprof (1.0.1-8) unstable; urgency=medium . * Stop using pp_popcon * Upstream download vanished * Standards-Version: 4.6.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Add missing build dependency on dh addon. * Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP. Checksums-Sha1: 2ad18901dbc4f7bb4bec952dc1770e2d449e2b69 7478168 librg-reprof-bundle-perl_1.0.1-8_all.deb 0a203253dff98c1ce052f8bd05f022746a44f9d3 15264 reprof_1.0.1-8_all.deb c8b4c3d672c19b2b322e6efaf4fcab22f2f636c3 5147 reprof_1.0.1-8_amd64.buildinfo Checksums-Sha256: 83f9d9f7e8246d0bc0ef4ebf79039dafee93f6936a7c5bfb85c2b2b89a25a30a 7478168 librg-reprof-bundle-perl_1.0.1-8_all.deb d81b51759830e13a0a5e6dddeb1ce5d1443832e512d2524c7fb675d0bf1a723a 15264 reprof_1.0.1-8_all.deb 37afbefb971db0feebe0051da236fbfac11a71ba167b1083147078c1d48bffe5 5147 reprof_1.0.1-8_amd64.buildinfo Files: 061fd2d3d29473caf30940fd433b93ee 7478168 perl optional librg-reprof-bundle-perl_1.0.1-8_all.deb dfa2435d14ddded3590e112e2c5e44c6 15264 science optional reprof_1.0.1-8_all.deb e8005e025587e2e6a85548e11e79b775 5147 science optional reprof_1.0.1-8_amd64.buildinfo Sun Apr 23 01:36:19 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.i2PN3uLA/reprof_1.0.1-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.i2PN3uLA/reprof_1.0.1-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.i2PN3uLA/reprof_1.0.1-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.i2PN3uLA/b1/reprof_1.0.1-8_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.i2PN3uLA/b2/reprof_1.0.1-8_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.492s) 0.492s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.126s) 0.126s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Sun Apr 23 01:36:20 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Sun Apr 23 01:36:20 UTC 2023 I: reprof from bookworm built successfully and reproducibly on amd64. Sun Apr 23 01:36:22 UTC 2023 I: Submitting .buildinfo files to external archives: Sun Apr 23 01:36:22 UTC 2023 I: Submitting 8.0K b1/reprof_1.0.1-8_amd64.buildinfo.asc Sun Apr 23 01:36:22 UTC 2023 I: Submitting 8.0K b2/reprof_1.0.1-8_amd64.buildinfo.asc Sun Apr 23 01:36:23 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Apr 23 01:36:23 UTC 2023 I: Done submitting .buildinfo files. Sun Apr 23 01:36:23 UTC 2023 I: Removing signed reprof_1.0.1-8_amd64.buildinfo.asc files: removed './b1/reprof_1.0.1-8_amd64.buildinfo.asc' removed './b2/reprof_1.0.1-8_amd64.buildinfo.asc'