Mon May 22 17:16:52 UTC 2023 I: starting to build racon/bookworm/amd64 on jenkins on '2023-05-22 17:16' Mon May 22 17:16:52 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_17/13812/console.log Mon May 22 17:16:52 UTC 2023 I: Downloading source for bookworm/racon=1.5.0-3 --2023-05-22 17:16:53-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/racon/racon_1.5.0-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2106 (2.1K) [text/prs.lines.tag] Saving to: ‘racon_1.5.0-3.dsc’ 0K .. 100% 177M=0s 2023-05-22 17:16:53 (177 MB/s) - ‘racon_1.5.0-3.dsc’ saved [2106/2106] Mon May 22 17:16:53 UTC 2023 I: racon_1.5.0-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: racon Binary: racon Architecture: any Version: 1.5.0-3 Maintainer: Debian Med Packaging Team Uploaders: Cédric Lood , Andreas Tille Homepage: https://github.com/lbcb-sci/racon Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/racon Vcs-Git: https://salsa.debian.org/med-team/racon.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler Package-List: racon deb science optional arch=any Checksums-Sha1: c508bea6f7b627e1796f2017669a8e99ed548ddd 3084154 racon_1.5.0.orig.tar.gz 5d5d6ba7f343bf6ee3124a052eb1858b9431dbf1 20652 racon_1.5.0-3.debian.tar.xz Checksums-Sha256: 58fdbbd88f0990b18e3139280aa4fa81e138a9cf0761edd66c43982af784d395 3084154 racon_1.5.0.orig.tar.gz 87ebd723dfb828888b59a5ed30143aa24ec3798c933f41e00196dacc3874d911 20652 racon_1.5.0-3.debian.tar.xz Files: de1982c33464fc7cec8a172931a6cf00 3084154 racon_1.5.0.orig.tar.gz face5096f46b2ce6c9c836bb01cf1603 20652 racon_1.5.0-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmM1k2ERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHvaQ/+N79w1AElJT5zodwml2cN53AhsH46O5QP JzGAY+aYLx/AZ9C6VIbd6eiTsZ+qNDSWLqqd/ABykcNbZEA+dBiRpX08U4/5OCNi zhXwtP+rO9w0znNpX6S8jUHMnC9yFlwW4t/1GmNAZ42byGm1vA5/6IXTkg2icHL0 8SSvibSqiZgNhiitaMPnKs1fSQA2ymTONHczdKuSRjTzpVkADmdpQch3j0TwZmF5 /hcYo4651y2NbVVJRbTEwPNoDXUE3TaXo0UZVojz5sOYHDQBGcbrai64O7ycB7Pd w+y3JfPaHzfRm23vsnO6PbpG+GFOflG54PIlNHa0Z90QHGZSlZym2gjvU36M2fa9 t3ZMnBLcUBkvTPWJeis9H3mv1/gmFtomkxf0cMz928nSwO8P1MvhoyrCu66q7PzO sOI8KxZ4tdbz+JvwHaa/FBrwl+n1krpXMD8PwoGxsLrY0a/gErVXooD3YoeTzv6d U/xsrofS7jo8CIaWTT2aMoK5JN5YRbk12zH2hWnJw/7XOKBcnTbIhQjRpf4AwfjS X8IJf9txoPJEn1atb/Af7F4FqOmMoAwlDsJPrftzo9bPpfaUocqekHZZJsMro9Xi fbm+SfYqW1SkeLNSR2twNJG1r+eZm6dNsipnerAsTGM7ejcAoyu0LjtZnpoGgS/5 41EO1XUq4VQ= =933u -----END PGP SIGNATURE----- Mon May 22 17:16:53 UTC 2023 I: Checking whether the package is not for us Mon May 22 17:16:53 UTC 2023 I: Starting 1st build on remote node ionos1-amd64.debian.net. Mon May 22 17:16:53 UTC 2023 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Mon May 22 17:20:50 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 22 05:16:55 -12 2023 I: pbuilder-time-stamp: 1684775815 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [racon_1.5.0-3.dsc] I: copying [./racon_1.5.0.orig.tar.gz] I: copying [./racon_1.5.0-3.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Sep 29 00:45:21 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./racon_1.5.0-3.dsc: no acceptable signature found dpkg-source: info: extracting racon in racon-1.5.0 dpkg-source: info: unpacking racon_1.5.0.orig.tar.gz dpkg-source: info: unpacking racon_1.5.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2015742/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='1522689255e243ea8093df29e856be5a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2015742' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wVYrFACe/pbuilderrc_HZyk --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wVYrFACe/b1 --logfile b1/build.log racon_1.5.0-3.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 5.10.0-23-amd64 #1 SMP Debian 5.10.179-1 (2023-05-12) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/2015742/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev (>= 1.2.7-3~); however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcurl4{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgtest-dev{a} libicu72{a} libjsoncpp25{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1{a} libsub-override-perl{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 61 newly installed, 0 to remove and 0 not upgraded. Need to get 34.5 MB of archives. After unpacking 129 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 procps amd64 2:4.0.2-3 [709 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libarchive13 amd64 3.6.2-1 [343 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-9 [386 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libjsoncpp25 amd64 1.9.5-4 [78.6 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 librhash0 amd64 1.4.3-3 [134 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libuv1 amd64 1.44.2-1 [140 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 cmake-data all 3.25.1-1 [2026 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 cmake amd64 3.25.1-1 [8692 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 googletest all 1.12.1-0.2 [506 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 libbiosoup-dev all 0.10.0-4 [7784 B] Get: 51 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libbioparser-dev all 3.0.15-3 [9032 B] Get: 53 http://deb.debian.org/debian bookworm/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.1 [97.7 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libcereal-dev amd64 1.3.2+dfsg-4 [221 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libedlib1 amd64 1.2.7-4+b1 [17.8 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libedlib-dev amd64 1.2.7-4+b1 [22.6 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libgtest-dev amd64 1.12.1-0.2 [240 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libspoa7.0.0 amd64 4.0.8-1 [68.4 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 libspoa-dev amd64 4.0.8-1 [9356 B] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libthread-pool-dev amd64 4.0.0-1 [7240 B] Get: 61 http://deb.debian.org/debian bookworm/main amd64 rampler amd64 2.1.1-1 [21.2 kB] Fetched 34.5 MB in 1s (46.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.2-3_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.2-3_amd64.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.17+nmu1_all.deb ... 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Setting up sensible-utils (0.0.17+nmu1) ... Setting up libbioparser-dev (3.0.15-3) ... Setting up librhash0:amd64 (1.4.3-3) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up procps (2:4.0.2-3) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up cmake-data (3.25.1-1) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libgtest-dev:amd64 (1.12.1-0.2) ... Setting up libtool (2.4.7-5) ... Setting up libarchive13:amd64 (3.6.2-1) ... Setting up libcereal-dev (1.3.2+dfsg-4) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libedlib-dev:amd64 (1.2.7-4+b1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libcurl4:amd64 (7.88.1-9) ... Setting up libspoa-dev:amd64 (4.0.8-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up cmake (3.25.1-1) ... Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/racon-1.5.0' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -Dracon_build_tests=ON -Dracon_build_wrapper=ON .. -- The CXX compiler identification is GNU 12.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/racon-1.5.0/obj-x86_64-linux-gnu # Somehow the means in the patch for CMakeLists.txt to replace -lpthread by -pthread to not work # Just hack it here sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/racon-1.5.0' dh_auto_build -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/racon-1.5.0 -B/build/racon-1.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles /build/racon-1.5.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/racon-1.5.0/obj-x86_64-linux-gnu' make -f 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-ffile-prefix-map=/build/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -DGTEST_HAS_PTHREAD=1 -std=c++11 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/racon-1.5.0/test/racon_test.cpp [ 80%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o /usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/racon-1.5.0/src/main.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz make[3]: Leaving directory '/build/racon-1.5.0/obj-x86_64-linux-gnu' [ 90%] Built target racon_exe [100%] Linking CXX executable bin/racon_test /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/racon_test.dir/test/racon_test.cpp.o -o bin/racon_test lib/libracon.a -ledlib -lspoa -pthread -lz /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[3]: Leaving directory '/build/racon-1.5.0/obj-x86_64-linux-gnu' [100%] Built target racon_test make[2]: Leaving directory '/build/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/racon-1.5.0/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/racon-1.5.0' cd test && ../obj-*/bin/racon_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (1 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (1 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (2 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (5 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (5 ms) [----------] 5 tests from RaconInitializeTest (17 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.000802 s [racon::Polisher::initialize] loaded sequences 0.059082 s [racon::Polisher::initialize] loaded overlaps 0.000620 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.051613 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.068028 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.083658 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.102145 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.115147 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.127515 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.174631 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.195049 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.211078 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.225821 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.247946 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.266002 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.286110 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.297469 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.325439 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.367166 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.380290 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.398356 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.419060 s [racon::Polisher::initialize] aligning overlaps [====================] 0.419093 s [racon::Polisher::initialize] transformed data into windows 0.002851 s [racon::Polisher::polish] generating consensus [=> ] 0.041022 s [racon::Polisher::polish] generating consensus [==> ] 0.067262 s [racon::Polisher::polish] generating consensus [===> ] 0.101072 s [racon::Polisher::polish] generating consensus [====> ] 0.129465 s [racon::Polisher::polish] generating consensus [=====> ] 0.139892 s [racon::Polisher::polish] generating consensus [======> ] 0.156995 s [racon::Polisher::polish] generating consensus [=======> ] 0.172432 s [racon::Polisher::polish] generating consensus [========> ] 0.197081 s [racon::Polisher::polish] generating consensus [=========> ] 0.216975 s [racon::Polisher::polish] generating consensus [==========> ] 0.240966 s [racon::Polisher::polish] generating consensus [===========> ] 0.280960 s [racon::Polisher::polish] generating consensus [============> ] 0.337009 s [racon::Polisher::polish] generating consensus [=============> ] 0.407890 s [racon::Polisher::polish] generating consensus [==============> ] 0.481140 s [racon::Polisher::polish] generating consensus [===============> ] 0.528685 s [racon::Polisher::polish] generating consensus [================> ] 0.565024 s [racon::Polisher::polish] generating consensus [=================> ] 0.610820 s [racon::Polisher::polish] generating consensus [==================> ] 0.636902 s [racon::Polisher::polish] generating consensus [===================>] 0.672815 s [racon::Polisher::polish] generating consensus [====================] 0.816369 s [racon::Polisher::] total = 1.326376 s [ OK ] RaconPolishingTest.ConsensusWithQualities (1335 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.000760 s [racon::Polisher::initialize] loaded sequences 0.019799 s [racon::Polisher::initialize] loaded overlaps 0.000387 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.047568 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.067447 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.087009 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.103465 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.123457 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.138757 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.181708 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.203447 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.219910 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.237111 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.256480 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.275600 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.293099 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.304199 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.315456 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.343938 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.352723 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.366970 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.388510 s [racon::Polisher::initialize] aligning overlaps [====================] 0.408897 s [racon::Polisher::initialize] transformed data into windows 0.000602 s [racon::Polisher::polish] generating consensus [=> ] 0.042443 s [racon::Polisher::polish] generating consensus [==> ] 0.081024 s [racon::Polisher::polish] generating consensus [===> ] 0.125911 s [racon::Polisher::polish] generating consensus [====> ] 0.157891 s [racon::Polisher::polish] generating consensus [=====> ] 0.181877 s [racon::Polisher::polish] generating consensus [======> ] 0.200527 s [racon::Polisher::polish] generating consensus [=======> ] 0.228615 s [racon::Polisher::polish] generating consensus [========> ] 0.252199 s [racon::Polisher::polish] generating consensus [=========> ] 0.277877 s [racon::Polisher::polish] generating consensus [==========> ] 0.317879 s [racon::Polisher::polish] generating consensus [===========> ] 0.367320 s [racon::Polisher::polish] generating consensus [============> ] 0.425600 s [racon::Polisher::polish] generating consensus [=============> ] 0.507325 s [racon::Polisher::polish] generating consensus [==============> ] 0.609907 s [racon::Polisher::polish] generating consensus [===============> ] 0.681131 s [racon::Polisher::polish] generating consensus [================> ] 0.748477 s [racon::Polisher::polish] generating consensus [=================> ] 0.801840 s [racon::Polisher::polish] generating consensus [==================> ] 0.843746 s [racon::Polisher::polish] generating consensus [===================>] 0.890126 s [racon::Polisher::polish] generating consensus [====================] 1.072852 s [racon::Polisher::] total = 1.521505 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (1531 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.000655 s [racon::Polisher::initialize] loaded sequences 0.046166 s [racon::Polisher::initialize] loaded overlaps 0.031146 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.003918 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.004119 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.004372 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.004606 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.004772 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.004957 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.005211 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.005664 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.005785 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.005935 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.006147 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.006517 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.006644 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.006903 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.007136 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.007228 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.007240 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.007352 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.007459 s [racon::Polisher::initialize] aligning overlaps [====================] 0.007480 s [racon::Polisher::initialize] transformed data into windows 0.003110 s [racon::Polisher::polish] generating consensus [=> ] 0.038382 s [racon::Polisher::polish] generating consensus [==> ] 0.067081 s [racon::Polisher::polish] generating consensus [===> ] 0.102869 s [racon::Polisher::polish] generating consensus [====> ] 0.123770 s [racon::Polisher::polish] generating consensus [=====> ] 0.144986 s [racon::Polisher::polish] generating consensus [======> ] 0.157991 s [racon::Polisher::polish] generating consensus [=======> ] 0.177119 s [racon::Polisher::polish] generating consensus [========> ] 0.192199 s [racon::Polisher::polish] generating consensus [=========> ] 0.212661 s [racon::Polisher::polish] generating consensus [==========> ] 0.237327 s [racon::Polisher::polish] generating consensus [===========> ] 0.276822 s [racon::Polisher::polish] generating consensus [============> ] 0.330520 s [racon::Polisher::polish] generating consensus [=============> ] 0.401686 s [racon::Polisher::polish] generating consensus [==============> ] 0.468522 s [racon::Polisher::polish] generating consensus [===============> ] 0.520463 s [racon::Polisher::polish] generating consensus [================> ] 0.553826 s [racon::Polisher::polish] generating consensus [=================> ] 0.606194 s [racon::Polisher::polish] generating consensus [==================> ] 0.637126 s [racon::Polisher::polish] generating consensus [===================>] 0.657160 s [racon::Polisher::polish] generating consensus [====================] 0.774247 s [racon::Polisher::] total = 0.883058 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (889 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.000603 s [racon::Polisher::initialize] loaded sequences 0.019635 s [racon::Polisher::initialize] loaded overlaps 0.029519 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.002741 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.002944 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.003194 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.003370 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.003516 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.003695 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.004015 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.004303 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.004439 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.004633 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.004827 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.005169 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.005302 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.005528 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.005764 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.005945 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.005957 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.006042 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.006122 s [racon::Polisher::initialize] aligning overlaps [====================] 0.006217 s [racon::Polisher::initialize] transformed data into windows 0.000678 s [racon::Polisher::polish] generating consensus [=> ] 0.040212 s [racon::Polisher::polish] generating consensus [==> ] 0.079393 s [racon::Polisher::polish] generating consensus [===> ] 0.117976 s [racon::Polisher::polish] generating consensus [====> ] 0.148188 s [racon::Polisher::polish] generating consensus [=====> ] 0.169697 s [racon::Polisher::polish] generating consensus [======> ] 0.189711 s [racon::Polisher::polish] generating consensus [=======> ] 0.211994 s [racon::Polisher::polish] generating consensus [========> ] 0.239476 s [racon::Polisher::polish] generating consensus [=========> ] 0.263420 s [racon::Polisher::polish] generating consensus [==========> ] 0.303427 s [racon::Polisher::polish] generating consensus [===========> ] 0.350565 s [racon::Polisher::polish] generating consensus [============> ] 0.411484 s [racon::Polisher::polish] generating consensus [=============> ] 0.494881 s [racon::Polisher::polish] generating consensus [==============> ] 0.579205 s [racon::Polisher::polish] generating consensus [===============> ] 0.655593 s [racon::Polisher::polish] generating consensus [================> ] 0.723494 s [racon::Polisher::polish] generating consensus [=================> ] 0.791017 s [racon::Polisher::polish] generating consensus [==================> ] 0.823430 s [racon::Polisher::polish] generating consensus [===================>] 0.863467 s [racon::Polisher::polish] generating consensus [====================] 1.023250 s [racon::Polisher::] total = 1.093261 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (1097 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.000669 s [racon::Polisher::initialize] loaded sequences 0.052089 s [racon::Polisher::initialize] loaded overlaps 0.000507 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.032248 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.049322 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.072299 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.088281 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.108491 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.127360 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.170973 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.192582 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.210243 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.226076 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.253194 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.266687 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.287118 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.297658 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.311679 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.341031 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.351539 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.368498 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.391116 s [racon::Polisher::initialize] aligning overlaps [====================] 0.397477 s [racon::Polisher::initialize] transformed data into windows 0.002709 s [racon::Polisher::polish] generating consensus [=> ] 0.147102 s [racon::Polisher::polish] generating consensus [==> ] 0.147515 s [racon::Polisher::polish] generating consensus [===> ] 0.276811 s [racon::Polisher::polish] generating consensus [====> ] 0.276873 s [racon::Polisher::polish] generating consensus [=====> ] 0.342394 s [racon::Polisher::polish] generating consensus [======> ] 0.342433 s [racon::Polisher::polish] generating consensus [=======> ] 0.397989 s [racon::Polisher::polish] generating consensus [========> ] 0.398065 s [racon::Polisher::polish] generating consensus [=========> ] 0.488766 s [racon::Polisher::polish] generating consensus [==========> ] 0.488803 s [racon::Polisher::polish] generating consensus [===========> ] 0.655403 s [racon::Polisher::polish] generating consensus [============> ] 0.669399 s [racon::Polisher::polish] generating consensus [=============> ] 0.972202 s [racon::Polisher::polish] generating consensus [==============> ] 0.972242 s [racon::Polisher::polish] generating consensus [===============> ] 1.162185 s [racon::Polisher::polish] generating consensus [================> ] 1.162282 s [racon::Polisher::polish] generating consensus [=================> ] 1.283290 s [racon::Polisher::polish] generating consensus [==================> ] 1.412856 s [racon::Polisher::polish] generating consensus [===================>] 1.412905 s [racon::Polisher::polish] generating consensus [====================] 1.658789 s [racon::Polisher::] total = 2.131599 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (2135 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.000584 s [racon::Polisher::initialize] loaded sequences 0.044938 s [racon::Polisher::initialize] loaded overlaps 0.000459 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.032185 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.048769 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.068847 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.084788 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.104792 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.124781 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.163693 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.184104 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.200448 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.214587 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.235262 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.253215 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.272874 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.283102 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.299394 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.342327 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.352932 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.373344 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.389816 s [racon::Polisher::initialize] aligning overlaps [====================] 0.403814 s [racon::Polisher::initialize] transformed data into windows 0.002783 s [racon::Polisher::polish] generating consensus [=> ] 0.036712 s [racon::Polisher::polish] generating consensus [==> ] 0.074073 s [racon::Polisher::polish] generating consensus [===> ] 0.098889 s [racon::Polisher::polish] generating consensus [====> ] 0.119955 s [racon::Polisher::polish] generating consensus [=====> ] 0.138337 s [racon::Polisher::polish] generating consensus [======> ] 0.155095 s [racon::Polisher::polish] generating consensus [=======> ] 0.170621 s [racon::Polisher::polish] generating consensus [========> ] 0.188696 s [racon::Polisher::polish] generating consensus [=========> ] 0.211525 s [racon::Polisher::polish] generating consensus [==========> ] 0.236104 s [racon::Polisher::polish] generating consensus [===========> ] 0.278053 s [racon::Polisher::polish] generating consensus [============> ] 0.331235 s [racon::Polisher::polish] generating consensus [=============> ] 0.401077 s [racon::Polisher::polish] generating consensus [==============> ] 0.469099 s [racon::Polisher::polish] generating consensus [===============> ] 0.519990 s [racon::Polisher::polish] generating consensus [================> ] 0.558090 s [racon::Polisher::polish] generating consensus [=================> ] 0.601655 s [racon::Polisher::polish] generating consensus [==================> ] 0.630120 s [racon::Polisher::polish] generating consensus [===================>] 0.662953 s [racon::Polisher::polish] generating consensus [====================] 0.764269 s [racon::Polisher::] total = 1.233178 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (1236 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.050112 s [racon::Polisher::initialize] loaded sequences 0.051479 s [racon::Polisher::initialize] loaded overlaps 0.017204 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.041749 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.068705 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.078778 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.096379 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.113955 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.131392 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.158455 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.174461 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.198458 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.217608 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.239608 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.273632 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.297820 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.325189 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.346476 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.373961 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.391965 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.416909 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.445190 s [racon::Polisher::initialize] aligning overlaps [====================] 0.466160 s [racon::Polisher::initialize] transformed data into windows 0.005685 s [racon::Polisher::polish] generating consensus [=> ] 0.036338 s [racon::Polisher::polish] generating consensus [==> ] 0.067677 s [racon::Polisher::polish] generating consensus [===> ] 0.102094 s [racon::Polisher::polish] generating consensus [====> ] 0.102430 s [racon::Polisher::polish] generating consensus [=====> ] 0.122543 s [racon::Polisher::polish] generating consensus [======> ] 0.136082 s [racon::Polisher::polish] generating consensus [=======> ] 0.157961 s [racon::Polisher::polish] generating consensus [========> ] 0.166673 s [racon::Polisher::polish] generating consensus [=========> ] 0.206209 s [racon::Polisher::polish] generating consensus [==========> ] 0.224601 s [racon::Polisher::polish] generating consensus [===========> ] 0.241438 s [racon::Polisher::polish] generating consensus [============> ] 0.247466 s [racon::Polisher::polish] generating consensus [=============> ] 0.269468 s [racon::Polisher::polish] generating consensus [==============> ] 0.278622 s [racon::Polisher::polish] generating consensus [===============> ] 0.314133 s [racon::Polisher::polish] generating consensus [================> ] 0.314868 s [racon::Polisher::polish] generating consensus [=================> ] 0.395959 s [racon::Polisher::polish] generating consensus [==================> ] 0.427540 s [racon::Polisher::polish] generating consensus [===================>] 0.459210 s [racon::Polisher::polish] generating consensus [====================] 0.465434 s [racon::Polisher::] total = 1.056726 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (1060 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.048603 s [racon::Polisher::initialize] loaded sequences 0.048429 s [racon::Polisher::initialize] loaded overlaps 0.013442 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.517336 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.866941 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.217862 s [racon::Polisher::initialize] aligning overlaps [====> ] 1.690955 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.103684 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.398837 s [racon::Polisher::initialize] aligning overlaps [=======> ] 2.793535 s [racon::Polisher::initialize] aligning overlaps [========> ] 3.295113 s [racon::Polisher::initialize] aligning overlaps [=========> ] 3.759103 s [racon::Polisher::initialize] aligning overlaps [==========> ] 4.229855 s [racon::Polisher::initialize] aligning overlaps [===========> ] 4.590540 s [racon::Polisher::initialize] aligning overlaps [============> ] 5.104262 s [racon::Polisher::initialize] aligning overlaps [=============> ] 5.624662 s [racon::Polisher::initialize] aligning overlaps [==============> ] 6.055426 s [racon::Polisher::initialize] aligning overlaps [===============> ] 6.650940 s [racon::Polisher::initialize] aligning overlaps [================> ] 7.186913 s [racon::Polisher::initialize] aligning overlaps [=================> ] 7.664980 s [racon::Polisher::initialize] aligning overlaps [==================> ] 8.175446 s [racon::Polisher::initialize] aligning overlaps [===================>] 8.680806 s [racon::Polisher::initialize] aligning overlaps [====================] 9.005170 s [racon::Polisher::initialize] transformed data into windows 0.087237 s [racon::Polisher::polish] generating consensus [=> ] 1.520120 s [racon::Polisher::polish] generating consensus [==> ] 2.602204 s [racon::Polisher::polish] generating consensus [===> ] 3.717444 s [racon::Polisher::polish] generating consensus [====> ] 4.684347 s [racon::Polisher::polish] generating consensus [=====> ] 5.797150 s [racon::Polisher::polish] generating consensus [======> ] 7.012775 s [racon::Polisher::polish] generating consensus [=======> ] 8.194356 s [racon::Polisher::polish] generating consensus [========> ] 9.140102 s [racon::Polisher::polish] generating consensus [=========> ] 10.231367 s [racon::Polisher::polish] generating consensus [==========> ] 11.610723 s [racon::Polisher::polish] generating consensus [===========> ] 12.748016 s [racon::Polisher::polish] generating consensus [============> ] 13.977818 s [racon::Polisher::polish] generating consensus [=============> ] 15.123571 s [racon::Polisher::polish] generating consensus [==============> ] 16.377204 s [racon::Polisher::polish] generating consensus [===============> ] 17.596914 s [racon::Polisher::polish] generating consensus [================> ] 18.335503 s [racon::Polisher::polish] generating consensus [=================> ] 19.657551 s [racon::Polisher::polish] generating consensus [==================> ] 20.929148 s [racon::Polisher::polish] generating consensus [===================>] 21.568363 s [racon::Polisher::polish] generating consensus [====================] 21.820727 s [racon::Polisher::] total = 31.028169 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (31031 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.023426 s [racon::Polisher::initialize] loaded sequences 0.020398 s [racon::Polisher::initialize] loaded overlaps 0.016058 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.849657 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.201656 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.545669 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.073667 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.409664 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.741656 s [racon::Polisher::initialize] aligning overlaps [=======> ] 3.141659 s [racon::Polisher::initialize] aligning overlaps [========> ] 3.677670 s [racon::Polisher::initialize] aligning overlaps [=========> ] 4.225665 s [racon::Polisher::initialize] aligning overlaps [==========> ] 4.677661 s [racon::Polisher::initialize] aligning overlaps [===========> ] 5.125658 s [racon::Polisher::initialize] aligning overlaps [============> ] 5.749688 s [racon::Polisher::initialize] aligning overlaps [=============> ] 6.325676 s [racon::Polisher::initialize] aligning overlaps [==============> ] 6.821665 s [racon::Polisher::initialize] aligning overlaps [===============> ] 7.397673 s [racon::Polisher::initialize] aligning overlaps [================> ] 8.029675 s [racon::Polisher::initialize] aligning overlaps [=================> ] 8.553673 s [racon::Polisher::initialize] aligning overlaps [==================> ] 9.053686 s [racon::Polisher::initialize] aligning overlaps [===================>] 9.653690 s [racon::Polisher::initialize] aligning overlaps [====================] 10.015704 s [racon::Polisher::initialize] transformed data into windows 0.025040 s [racon::Polisher::polish] generating consensus [=> ] 2.333779 s [racon::Polisher::polish] generating consensus [==> ] 4.177773 s [racon::Polisher::polish] generating consensus [===> ] 5.805832 s [racon::Polisher::polish] generating consensus [====> ] 7.061845 s [racon::Polisher::polish] generating consensus [=====> ] 8.789792 s [racon::Polisher::polish] generating consensus [======> ] 10.545763 s [racon::Polisher::polish] generating consensus [=======> ] 12.365776 s [racon::Polisher::polish] generating consensus [========> ] 14.025774 s [racon::Polisher::polish] generating consensus [=========> ] 15.777758 s [racon::Polisher::polish] generating consensus [==========> ] 17.813777 s [racon::Polisher::polish] generating consensus [===========> ] 20.237817 s [racon::Polisher::polish] generating consensus [============> ] 23.458238 s [racon::Polisher::polish] generating consensus [=============> ] 25.493772 s [racon::Polisher::polish] generating consensus [==============> ] 27.765751 s [racon::Polisher::polish] generating consensus [===============> ] 29.535471 s [racon::Polisher::polish] generating consensus [================> ] 30.532329 s [racon::Polisher::polish] generating consensus [=================> ] 33.957991 s [racon::Polisher::polish] generating consensus [==================> ] 35.809871 s [racon::Polisher::polish] generating consensus [===================>] 37.433774 s [racon::Polisher::polish] generating consensus [====================] 38.352815 s [racon::Polisher::] total = 48.457649 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (48465 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.055483 s [racon::Polisher::initialize] loaded sequences 0.055659 s [racon::Polisher::initialize] loaded overlaps 0.015371 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.805645 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.165670 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.497647 s [racon::Polisher::initialize] aligning overlaps [====> ] 1.977655 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.341645 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.749675 s [racon::Polisher::initialize] aligning overlaps [=======> ] 3.153659 s [racon::Polisher::initialize] aligning overlaps [========> ] 3.633645 s [racon::Polisher::initialize] aligning overlaps [=========> ] 4.313656 s [racon::Polisher::initialize] aligning overlaps [==========> ] 4.729649 s [racon::Polisher::initialize] aligning overlaps [===========> ] 5.089648 s [racon::Polisher::initialize] aligning overlaps [============> ] 5.641657 s [racon::Polisher::initialize] aligning overlaps [=============> ] 6.201659 s [racon::Polisher::initialize] aligning overlaps [==============> ] 6.713660 s [racon::Polisher::initialize] aligning overlaps [===============> ] 7.329685 s [racon::Polisher::initialize] aligning overlaps [================> ] 8.021651 s [racon::Polisher::initialize] aligning overlaps [=================> ] 8.577650 s [racon::Polisher::initialize] aligning overlaps [==================> ] 9.113630 s [racon::Polisher::initialize] aligning overlaps [===================>] 9.657648 s [racon::Polisher::initialize] aligning overlaps [====================] 9.871427 s [racon::Polisher::initialize] transformed data into windows 0.080497 s [racon::Polisher::polish] generating consensus [=> ] 1.531760 s [racon::Polisher::polish] generating consensus [==> ] 2.666838 s [racon::Polisher::polish] generating consensus [===> ] 3.864101 s [racon::Polisher::polish] generating consensus [====> ] 4.856275 s [racon::Polisher::polish] generating consensus [=====> ] 5.942298 s [racon::Polisher::polish] generating consensus [======> ] 7.202177 s [racon::Polisher::polish] generating consensus [=======> ] 8.460497 s [racon::Polisher::polish] generating consensus [========> ] 9.378907 s [racon::Polisher::polish] generating consensus [=========> ] 10.579095 s [racon::Polisher::polish] generating consensus [==========> ] 11.963519 s [racon::Polisher::polish] generating consensus [===========> ] 13.136618 s [racon::Polisher::polish] generating consensus [============> ] 14.397732 s [racon::Polisher::polish] generating consensus [=============> ] 15.466823 s [racon::Polisher::polish] generating consensus [==============> ] 16.662182 s [racon::Polisher::polish] generating consensus [===============> ] 17.952302 s [racon::Polisher::polish] generating consensus [================> ] 18.657981 s [racon::Polisher::polish] generating consensus [=================> ] 20.073702 s [racon::Polisher::polish] generating consensus [==================> ] 21.389644 s [racon::Polisher::polish] generating consensus [===================>] 22.659932 s [racon::Polisher::polish] generating consensus [====================] 23.641078 s [racon::Polisher::] total = 33.722617 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (33726 ms) [----------] 10 tests from RaconPolishingTest (122510 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (122527 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/racon-1.5.0 -B/build/racon-1.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/racon-1.5.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/racon-1.5.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/racon-1.5.0/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/racon-1.5.0/obj-x86_64-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon' in '../racon_1.5.0-3_amd64.deb'. dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_amd64.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2015742 and its subdirectories I: Current time: Mon May 22 05:20:50 -12 2023 I: pbuilder-time-stamp: 1684776050 Mon May 22 17:20:50 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Mon May 22 17:20:50 UTC 2023 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Mon May 22 17:25:08 UTC 2023 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Mon May 22 17:25:09 UTC 2023 I: racon_1.5.0-3_amd64.changes: Format: 1.8 Date: Thu, 29 Sep 2022 14:39:55 +0200 Source: racon Binary: racon racon-dbgsym Architecture: amd64 Version: 1.5.0-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: racon - consensus module for raw de novo DNA assembly of long uncorrected Changes: racon (1.5.0-3) unstable; urgency=medium . * Standards-Version: 4.6.1 (routine-update) * Drop patch making racon compatible to old libthread_pool Checksums-Sha1: 5083bc5336b4370308a4fb2f4df5241f4f9d1fd9 1038168 racon-dbgsym_1.5.0-3_amd64.deb 5b0a76df1bc366606c74a799af83031a3e68ff8e 6170 racon_1.5.0-3_amd64.buildinfo 45be46ff58952746d7c5daf0d0e0a3d8791a4236 3114428 racon_1.5.0-3_amd64.deb Checksums-Sha256: 281cab939c83a3a84a0cc4086b73b66a0933bf399070ff1e8c7c82c3c4f1502b 1038168 racon-dbgsym_1.5.0-3_amd64.deb 719f9ed7b1899b472caa8e9dc145b3b38c89df4d78a55f7bafd09a12ef744831 6170 racon_1.5.0-3_amd64.buildinfo acb8f29b497d1e9d1de6b6f26ebd6b6e3d33fd4a83334424423c0b9ba5780e01 3114428 racon_1.5.0-3_amd64.deb Files: 32cd5bcc9c01faa6c3f24abb26032660 1038168 debug optional racon-dbgsym_1.5.0-3_amd64.deb 5735b35477e40d6f8caa42f8d14d4d3a 6170 science optional racon_1.5.0-3_amd64.buildinfo 9243c3483383a651ca1cdbf2200a44e9 3114428 science optional racon_1.5.0-3_amd64.deb Mon May 22 17:25:10 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.wVYrFACe/racon_1.5.0-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.wVYrFACe/racon_1.5.0-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.wVYrFACe/racon_1.5.0-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.wVYrFACe/b1/racon_1.5.0-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.wVYrFACe/b2/racon_1.5.0-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.428s) 0.428s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.062s) 0.062s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Mon May 22 17:25:12 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Mon May 22 17:25:12 UTC 2023 I: racon from bookworm built successfully and reproducibly on amd64. Mon May 22 17:25:14 UTC 2023 I: Submitting .buildinfo files to external archives: Mon May 22 17:25:14 UTC 2023 I: Submitting 8.0K b1/racon_1.5.0-3_amd64.buildinfo.asc Mon May 22 17:25:15 UTC 2023 I: Submitting 8.0K b2/racon_1.5.0-3_amd64.buildinfo.asc Mon May 22 17:25:16 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon May 22 17:25:16 UTC 2023 I: Done submitting .buildinfo files. Mon May 22 17:25:16 UTC 2023 I: Removing signed racon_1.5.0-3_amd64.buildinfo.asc files: removed './b1/racon_1.5.0-3_amd64.buildinfo.asc' removed './b2/racon_1.5.0-3_amd64.buildinfo.asc'