Fri Apr 14 01:24:45 UTC 2023 I: starting to build r-cran-fastcluster/bookworm/amd64 on jenkins on '2023-04-14 01:24' Fri Apr 14 01:24:45 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_20/17325/console.log Fri Apr 14 01:24:45 UTC 2023 I: Downloading source for bookworm/r-cran-fastcluster=1.2.3-2 --2023-04-14 01:24:45-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/r-cran-fastcluster/r-cran-fastcluster_1.2.3-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2296 (2.2K) [text/prs.lines.tag] Saving to: ‘r-cran-fastcluster_1.2.3-2.dsc’ 0K .. 100% 78.1M=0s 2023-04-14 01:24:46 (78.1 MB/s) - ‘r-cran-fastcluster_1.2.3-2.dsc’ saved [2296/2296] Fri Apr 14 01:24:46 UTC 2023 I: r-cran-fastcluster_1.2.3-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-cran-fastcluster Binary: r-cran-fastcluster, python3-fastcluster Architecture: any Version: 1.2.3-2 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://cran.r-project.org/package=fastcluster Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-cran-fastcluster Vcs-Git: https://salsa.debian.org/r-pkg-team/r-cran-fastcluster.git Testsuite: autopkgtest, autopkgtest-pkg-r Testsuite-Triggers: r-cran-runit Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, dh-python, python3-all-dev, python3-numpy, python3-setuptools, python3-scipy Package-List: python3-fastcluster deb python optional arch=any r-cran-fastcluster deb gnu-r optional arch=any Checksums-Sha1: 8dc30f046bb02da38337b8f73f2136a7f6ce1495 207483 r-cran-fastcluster_1.2.3.orig.tar.gz a99135aff1d9683186ab79831bffd8d3d818859d 4740 r-cran-fastcluster_1.2.3-2.debian.tar.xz Checksums-Sha256: 1f229129e1cddc78c7bb5ecc90c4d28ed810ee68cf210004c7cdfa12cfaf2a01 207483 r-cran-fastcluster_1.2.3.orig.tar.gz 6c570b0da48c5978360375e9768e10de22a4f739d1621576a71746ab559ec235 4740 r-cran-fastcluster_1.2.3-2.debian.tar.xz Files: 3c0b40890f78a844cc0a6209454496bf 207483 r-cran-fastcluster_1.2.3.orig.tar.gz 83c8a4574a70b0ebd126b65b46957779 4740 r-cran-fastcluster_1.2.3-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPaMIgRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFw/hAAlZhMsUKyGhRhvbzYA0QEZ20+2V2vIvsq bE9Irr6TjKTV5GygW7LwUnGIU5CmlSzecgy5Iyv3/pxk38TN5iAiCJMMndBxf/PI xUkJeOMci5Grjth/4WVOMuIsWljXDUbMFH5yZAh3Y/fzYP1/y+jW76DCBOkw5+u9 PnqCGwFrUjJamUHBurlKgMSZPgA6YcwBhAJ0jPtZe9mMB5fHIPQmy8hiGRXqvw0d 7UXnN8vhDGIo8EGjwL6NqxvysVap9h8BKb9z1J3AURopKHuZ9+Dt4VyYRCHSPIMv MlaFIKQ+PI5OpB0UDyqnKUKXEdvXLusexudldhDMT9ld/TvVRQmuF+R24aBceOXf qnikRpoG/ROm78esbymZTYlfkjFGLoJJhngLzuG84A0zVG9A1hTI6IPOkCiX630b qW1MFxZtZ0yMrJP5FRbrsiuK51xFl8KmibpG4BjZrrXbixiNdrNCfXNcWqLFiEjx 3+3BiqK59yV6AlYguumzjjjONzsVnA4Jv2oc+RWuSLBwoYMZgGiY0rahA/ILQjZH WwWRLL3vsmf/3MKFOgkYWvMbCJCZv8QIxWwZYe4KhVwJIhO8EPWSK7fsbNLJh8iG zS6UoVUoAeJAzhVGGwZlyixqAzUitoTmw5AEElbkXy1mUAnkgA9/8pmO4ZaP7ICP vjPSEUYkcxM= =L0Ik -----END PGP SIGNATURE----- Fri Apr 14 01:24:46 UTC 2023 I: Checking whether the package is not for us Fri Apr 14 01:24:46 UTC 2023 I: Starting 1st build on remote node ionos15-amd64.debian.net. Fri Apr 14 01:24:46 UTC 2023 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Fri Apr 14 01:27:09 UTC 2023 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed May 15 19:47:48 -12 2024 I: pbuilder-time-stamp: 1715845668 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-cran-fastcluster_1.2.3-2.dsc] I: copying [./r-cran-fastcluster_1.2.3.orig.tar.gz] I: copying [./r-cran-fastcluster_1.2.3-2.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Jan 31 21:27:36 2023 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-cran-fastcluster_1.2.3-2.dsc: no acceptable signature found dpkg-source: info: extracting r-cran-fastcluster in r-cran-fastcluster-1.2.3 dpkg-source: info: unpacking r-cran-fastcluster_1.2.3.orig.tar.gz dpkg-source: info: unpacking r-cran-fastcluster_1.2.3-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/603493/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f010909032b14d71bf670d9bd71cd4ba' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='603493' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.oSpe3iCy/pbuilderrc_bfkc --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.oSpe3iCy/b1 --logfile b1/build.log r-cran-fastcluster_1.2.3-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 6.1.0-0.deb11.5-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.12-1~bpo11+1 (2023-03-05) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Feb 12 2023 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 2023 more -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 18 2022 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Feb 12 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/603493/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, dh-python, python3-all-dev, python3-numpy, python3-setuptools, python3-scipy dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcurl3-gnutls{a} libcurl4{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-12-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack-dev{a} liblapack3{a} liblbfgsb0{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre16-3{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpcre3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline-dev{a} libreadline8{a} libregexp-ipv6-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsm6{a} libssh2-1{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxsimd-dev{a} libxss1{a} libxt6{a} m4{a} man-db{a} media-types{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-beniget{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-gast{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pkg-resources{a} python3-ply{a} python3-pythran{a} python3-scipy{a} python3-setuptools{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} r-base-core{a} r-base-dev{a} readline-common{a} sensible-utils{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage javascript-common libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix python3-pil r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 213 newly installed, 0 to remove and 0 not upgraded. Need to get 144 MB of archives. After unpacking 611 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.8-1 [1407 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 38 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b3 [687 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-2 [131 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130 [104 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 zip amd64 3.0-13 [230 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 unzip amd64 6.0-28 [166 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libpaper1 amd64 1.1.29 [12.5 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libpaper-utils amd64 1.1.29 [8868 B] Get: 53 http://deb.debian.org/debian bookworm/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-4 [399 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2 [292 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2 [759 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 libcairo2 amd64 1.16.0-7 [575 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-7 [386 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-1 [1397 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 fontconfig amd64 2.14.1-4 [449 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get: 88 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get: 89 http://deb.debian.org/debian bookworm/main amd64 libthai-data all 0.1.29-1 [176 kB] Get: 90 http://deb.debian.org/debian bookworm/main amd64 libdatrie1 amd64 0.2.13-2+b1 [43.3 kB] Get: 91 http://deb.debian.org/debian bookworm/main amd64 libthai0 amd64 0.1.29-1 [57.5 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 libpango-1.0-0 amd64 1.50.12+ds-1 [212 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 libpangoft2-1.0-0 amd64 1.50.12+ds-1 [47.4 kB] Get: 94 http://deb.debian.org/debian bookworm/main amd64 libpangocairo-1.0-0 amd64 1.50.12+ds-1 [34.2 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [1035 kB] Get: 96 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get: 97 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get: 98 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get: 99 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.1 [285 kB] Get: 100 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-5 [316 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 103 http://deb.debian.org/debian bookworm/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get: 104 http://deb.debian.org/debian bookworm/main amd64 libtk8.6 amd64 8.6.13-2 [781 kB] Get: 105 http://deb.debian.org/debian bookworm/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 107 http://deb.debian.org/debian bookworm/main amd64 libxt6 amd64 1:1.2.1-1.1 [186 kB] Get: 108 http://deb.debian.org/debian bookworm/main amd64 r-base-core amd64 4.2.2.20221110-2 [26.0 MB] Get: 109 http://deb.debian.org/debian bookworm/main amd64 libgfortran-12-dev amd64 12.2.0-14 [834 kB] Get: 110 http://deb.debian.org/debian bookworm/main amd64 gfortran-12 amd64 12.2.0-14 [10.2 MB] Get: 111 http://deb.debian.org/debian bookworm/main amd64 gfortran amd64 4:12.2.0-3 [1428 B] Get: 112 http://deb.debian.org/debian bookworm/main amd64 libblas-dev amd64 3.11.0-2 [158 kB] Get: 113 http://deb.debian.org/debian bookworm/main amd64 liblapack-dev amd64 3.11.0-2 [4631 kB] Get: 114 http://deb.debian.org/debian bookworm/main amd64 libncurses6 amd64 6.4-2 [103 kB] Get: 115 http://deb.debian.org/debian bookworm/main amd64 libncurses-dev amd64 6.4-2 [348 kB] Get: 116 http://deb.debian.org/debian bookworm/main amd64 libncurses5-dev amd64 6.4-2 [932 B] Get: 117 http://deb.debian.org/debian bookworm/main amd64 libreadline-dev amd64 8.2-1.3 [151 kB] Get: 118 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-2 [290 kB] Get: 119 http://deb.debian.org/debian bookworm/main amd64 libjpeg-dev amd64 1:2.1.5-2 [71.8 kB] Get: 120 http://deb.debian.org/debian bookworm/main amd64 libpcre2-16-0 amd64 10.42-1 [245 kB] Get: 121 http://deb.debian.org/debian bookworm/main amd64 libpcre2-32-0 amd64 10.42-1 [234 kB] Get: 122 http://deb.debian.org/debian bookworm/main amd64 libpcre2-posix3 amd64 10.42-1 [55.4 kB] Get: 123 http://deb.debian.org/debian bookworm/main amd64 libpcre2-dev amd64 10.42-1 [753 kB] Get: 124 http://deb.debian.org/debian bookworm/main amd64 libpcre3 amd64 2:8.39-15 [341 kB] Get: 125 http://deb.debian.org/debian bookworm/main amd64 libpcre16-3 amd64 2:8.39-15 [257 kB] Get: 126 http://deb.debian.org/debian bookworm/main amd64 libpcre32-3 amd64 2:8.39-15 [248 kB] Get: 127 http://deb.debian.org/debian bookworm/main amd64 libpcrecpp0v5 amd64 2:8.39-15 [143 kB] Get: 128 http://deb.debian.org/debian bookworm/main amd64 libpcre3-dev amd64 2:8.39-15 [653 kB] Get: 129 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 130 http://deb.debian.org/debian bookworm/main amd64 libpng-dev amd64 1.6.39-2 [359 kB] Get: 131 http://deb.debian.org/debian bookworm/main amd64 libbz2-dev amd64 1.0.8-5+b1 [30.9 kB] Get: 132 http://deb.debian.org/debian bookworm/main amd64 liblzma-dev amd64 5.4.1-0.2 [260 kB] Get: 133 http://deb.debian.org/debian bookworm/main amd64 icu-devtools amd64 72.1-3 [206 kB] Get: 134 http://deb.debian.org/debian bookworm/main amd64 libicu-dev amd64 72.1-3 [10.3 MB] Get: 135 http://deb.debian.org/debian bookworm/main amd64 libxmuu1 amd64 2:1.1.3-3 [23.9 kB] Get: 136 http://deb.debian.org/debian bookworm/main amd64 xauth amd64 1:1.1.2-1 [36.0 kB] Get: 137 http://deb.debian.org/debian bookworm/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB] Get: 138 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get: 139 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB] Get: 140 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB] Get: 141 http://deb.debian.org/debian bookworm/main amd64 r-base-dev all 4.2.2.20221110-2 [4492 B] Get: 142 http://deb.debian.org/debian bookworm/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 143 http://deb.debian.org/debian bookworm/main amd64 libswitch-perl all 2.17-3 [20.3 kB] Get: 144 http://deb.debian.org/debian bookworm/main amd64 libclone-perl amd64 0.46-1 [13.7 kB] Get: 145 http://deb.debian.org/debian bookworm/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 146 http://deb.debian.org/debian bookworm/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 147 http://deb.debian.org/debian bookworm/main amd64 libhttp-date-perl all 6.05-2 [10.5 kB] Get: 148 http://deb.debian.org/debian bookworm/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 149 http://deb.debian.org/debian bookworm/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 150 http://deb.debian.org/debian bookworm/main amd64 libregexp-ipv6-perl all 0.03-3 [5212 B] Get: 151 http://deb.debian.org/debian bookworm/main amd64 liburi-perl all 5.17-1 [90.4 kB] Get: 152 http://deb.debian.org/debian bookworm/main amd64 libhttp-message-perl all 6.44-1 [81.7 kB] Get: 153 http://deb.debian.org/debian bookworm/main amd64 libparams-util-perl amd64 1.102-2+b1 [24.8 kB] Get: 154 http://deb.debian.org/debian bookworm/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 155 http://deb.debian.org/debian bookworm/main amd64 libdata-optlist-perl all 0.113-1 [10.6 kB] Get: 156 http://deb.debian.org/debian bookworm/main amd64 libb-hooks-op-check-perl amd64 0.22-2+b1 [10.5 kB] Get: 157 http://deb.debian.org/debian bookworm/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get: 158 http://deb.debian.org/debian bookworm/main amd64 libdevel-callchecker-perl amd64 0.008-2 [15.8 kB] Get: 159 http://deb.debian.org/debian bookworm/main amd64 libparams-classify-perl amd64 0.015-2+b1 [23.1 kB] Get: 160 http://deb.debian.org/debian bookworm/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 161 http://deb.debian.org/debian bookworm/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 162 http://deb.debian.org/debian bookworm/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 163 http://deb.debian.org/debian bookworm/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 164 http://deb.debian.org/debian bookworm/main amd64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 165 http://deb.debian.org/debian bookworm/main amd64 libclass-load-xs-perl amd64 0.10-2+b1 [14.0 kB] Get: 166 http://deb.debian.org/debian bookworm/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 167 http://deb.debian.org/debian bookworm/main amd64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 168 http://deb.debian.org/debian bookworm/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 169 http://deb.debian.org/debian bookworm/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 170 http://deb.debian.org/debian bookworm/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 171 http://deb.debian.org/debian bookworm/main amd64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 172 http://deb.debian.org/debian bookworm/main amd64 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB] Get: 173 http://deb.debian.org/debian bookworm/main amd64 libsub-exporter-perl all 0.989-1 [50.5 kB] Get: 174 http://deb.debian.org/debian bookworm/main amd64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 175 http://deb.debian.org/debian bookworm/main amd64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 176 http://deb.debian.org/debian bookworm/main amd64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 177 http://deb.debian.org/debian bookworm/main amd64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 178 http://deb.debian.org/debian bookworm/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b1 [19.8 kB] Get: 179 http://deb.debian.org/debian bookworm/main amd64 libmoose-perl amd64 2.2203-1 [794 kB] Get: 180 http://deb.debian.org/debian bookworm/main amd64 libvariable-magic-perl amd64 0.63-1+b1 [44.0 kB] Get: 181 http://deb.debian.org/debian bookworm/main amd64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get: 182 http://deb.debian.org/debian bookworm/main amd64 libsub-identify-perl amd64 0.14-3 [10.9 kB] Get: 183 http://deb.debian.org/debian bookworm/main amd64 libsub-name-perl amd64 0.26-2+b1 [12.6 kB] Get: 184 http://deb.debian.org/debian bookworm/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 185 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.88.1-7 [380 kB] Get: 186 http://deb.debian.org/debian bookworm/main amd64 libwww-curl-perl amd64 4.17-10 [58.3 kB] Get: 187 http://deb.debian.org/debian bookworm/main amd64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 188 http://deb.debian.org/debian bookworm/main amd64 dh-r all 20230121 [37.9 kB] Get: 189 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-20 [9510 kB] Get: 190 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get: 191 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get: 192 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 193 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 194 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 195 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [28.9 kB] Get: 196 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get: 197 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6 [4738 kB] Get: 198 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get: 199 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get: 200 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get: 201 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get: 202 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6 [615 kB] Get: 203 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get: 204 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Get: 205 http://deb.debian.org/debian bookworm/main amd64 python3-gast all 0.5.2-2 [9364 B] Get: 206 http://deb.debian.org/debian bookworm/main amd64 python3-beniget all 0.4.1-3 [9920 B] Get: 207 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get: 208 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 209 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get: 210 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get: 211 http://deb.debian.org/debian bookworm/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get: 212 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.10.1-2 [15.2 MB] Get: 213 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Fetched 144 MB in 2s (94.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19912 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_amd64.deb ... 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Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20346 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17+nmu1_all.deb ... 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Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:12.2.0-3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:amd64 (1.16.0-7) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libxt6:amd64 (1:1.2.1-1.1) ... Setting up xauth (1:1.1.2-1) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libxft2:amd64 (2.3.6-1) ... Setting up libpython3.11:amd64 (3.11.2-6) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libtk8.6:amd64 (8.6.13-2) ... Setting up libwww-curl-perl:amd64 (4.17-10) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up python3-decorator (5.1.1-3) ... Setting up libpython3.11-dev:amd64 (3.11.2-6) ... Setting up r-base-core (4.2.2.20221110-2) ... Creating config file /etc/R/Renviron with new version Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b1) ... Setting up python3-lib2to3 (3.11.2-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-2) ... Setting up dh-python (5.20230130) ... Setting up r-base-dev (4.2.2.20221110-2) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3.11-dev (3.11.2-6) ... Setting up libmoose-perl:amd64 (2.2203-1) ... Setting up python3-ply (3.11-5) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-beniget (0.4.1-3) ... Setting up libpython3-all-dev:amd64 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up dh-r (20230121) ... Setting up python3-scipy (1.10.1-2) ... Processing triggers for libc-bin (2.36-8) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/r-cran-fastcluster-1.2.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-cran-fastcluster_1.2.3-2_source.changes dpkg-buildpackage: info: source package r-cran-fastcluster dpkg-buildpackage: info: source version 1.2.3-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild --sourcedirectory=src/python debian/rules override_dh_auto_clean make[1]: Entering directory '/build/r-cran-fastcluster-1.2.3' dh_auto_clean || true I: pybuild base:240: python3.11 setup.py clean Fastcluster version: 1.2.3 Python version: 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] running clean removing '/build/r-cran-fastcluster-1.2.3/.pybuild/cpython3_3.11_fastcluster/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it # Parts of the following are taken from the CDBS file for F. if test -d src; then \ find src -regex ".*\.o" | \ xargs --no-run-if-empty -r rm; \ find src src -regex ".*\.so" | \ xargs --no-run-if-empty -r rm; \ fi rm -f config.log config.status rm -rf tmp-install make[1]: Leaving directory '/build/r-cran-fastcluster-1.2.3' dh_autoreconf_clean -O--buildsystem=pybuild -O--sourcedirectory=src/python dh_clean -O--buildsystem=pybuild -O--sourcedirectory=src/python debian/rules binary dh binary --with python3 --buildsystem=pybuild --sourcedirectory=src/python dh_update_autotools_config -O--buildsystem=pybuild -O--sourcedirectory=src/python dh_autoreconf -O--buildsystem=pybuild -O--sourcedirectory=src/python dh_auto_configure -O--buildsystem=pybuild -O--sourcedirectory=src/python I: pybuild base:240: python3.11 setup.py config Fastcluster version: 1.2.3 Python version: 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] running config dh_auto_build -O--buildsystem=pybuild -O--sourcedirectory=src/python I: pybuild base:240: /usr/bin/python3 setup.py build Fastcluster version: 1.2.3 Python version: 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] running build running build_py copying fastcluster.py -> /build/r-cran-fastcluster-1.2.3/.pybuild/cpython3_3.11_fastcluster/build running build_ext building '_fastcluster' extension creating build creating build/temp.linux-x86_64-cpython-311 x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/r-cran-fastcluster-1.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c fastcluster_python.cpp -o build/temp.linux-x86_64-cpython-311/fastcluster_python.o In file included from fastcluster_python.cpp:38: ../fastcluster.cpp:62: warning: ignoring ‘#pragma STDC FENV_ACCESS’ [-Wunknown-pragmas] 62 | #pragma STDC FENV_ACCESS ON | ../fastcluster.cpp:63: warning: ignoring ‘#pragma messag ’ [-Wunknown-pragmas] 63 | #pragma messag("If there is a warning about unknown #pragma STDC FENV_ACCESS, this can be ignored.") | ../fastcluster.cpp:53:35: note: ‘#pragma message: Use fenv header.’ 53 | #pragma message("Use fenv header.") | ^ x86_64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/r-cran-fastcluster-1.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/fastcluster_python.o -L/usr/lib/x86_64-linux-gnu -o /build/r-cran-fastcluster-1.2.3/.pybuild/cpython3_3.11_fastcluster/build/_fastcluster.cpython-311-x86_64-linux-gnu.so dh_auto_test -O--buildsystem=pybuild -O--sourcedirectory=src/python I: pybuild base:240: python3.11 setup.py test Fastcluster version: 1.2.3 Python version: 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] running test WARNING: Testing via this command is deprecated and will be removed in a future version. Users looking for a generic test entry point independent of test runner are encouraged to use tox. running egg_info creating fastcluster.egg-info writing fastcluster.egg-info/PKG-INFO writing dependency_links to fastcluster.egg-info/dependency_links.txt writing requirements to fastcluster.egg-info/requires.txt writing top-level names to fastcluster.egg-info/top_level.txt writing manifest file 'fastcluster.egg-info/SOURCES.txt' reading manifest file 'fastcluster.egg-info/SOURCES.txt' writing manifest file 'fastcluster.egg-info/SOURCES.txt' running build_ext copying /build/r-cran-fastcluster-1.2.3/.pybuild/cpython3_3.11_fastcluster/build/_fastcluster.cpython-311-x86_64-linux-gnu.so -> test (tests.fastcluster_test.test) ... ok test_nan (tests.fastcluster_test.test_nan) ... ok test_vector (tests.fastcluster_test.test_vector) ... Test program for the 'fastcluster' package. Copyright: * Until package version 1.1.23: (c) 2011 Daniel Müllner * All changes from version 1.1.24 on: (c) Google Inc. Dimension: 13 Number of points: 90 Real distance values: Method: single...OK. Method: complete...OK. Method: average...OK. Method: weighted...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Integer distance values: Method: single...OK. Method: complete...OK. Method: average...OK. Method: weighted...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Dimension: 18 Number of points: 67 Real distance values: Method: single...OK. Method: complete...OK. Method: average...OK. Method: weighted...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Integer distance values: Method: single...OK. Method: complete...OK. Method: average...OK. Method: weighted...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Dimension: 15 Number of points: 61 Real distance values: Method: single...OK. Method: complete...OK. Method: average...OK. Method: weighted...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Integer distance values: Method: single...OK. Method: complete...OK. Method: average...OK. Method: weighted...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Dimension: 8 Number of points: 52 Real distance values: Method: single...OK. Method: complete...OK. Method: average...OK. Method: weighted...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Integer distance values: Method: single...OK. Method: complete...OK. Method: average...OK. Method: weighted...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Dimension: 14 Number of points: 21 Real distance values: Method: single...OK. Method: complete...OK. Method: average...OK. Method: weighted...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Integer distance values: Method: single...OK. Method: complete...OK. Method: average...OK. Method: weighted...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Dimension: 5 Number of points: 98 Real distance values: Method: single...OK. Method: complete...OK. Method: average...OK. Method: weighted...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Integer distance values: Method: single...OK. Method: complete...OK. Method: average...OK. Method: weighted...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Dimension: 4 Number of points: 80 Real distance values: Method: single...OK. Method: complete...OK. Method: average...OK. Method: weighted...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Integer distance values: Method: single...OK. Method: complete...OK. Method: average...OK. Method: weighted...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Dimension: 19 Number of points: 67 Real distance values: Method: single...OK. Method: complete...OK. Method: average...OK. Method: weighted...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Integer distance values: Method: single...OK. Method: complete...OK. Method: average...OK. Method: weighted...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Dimension: 9 Number of points: 51 Real distance values: Method: single...OK. Method: complete...OK. Method: average...OK. Method: weighted...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Integer distance values: Method: single...OK. Method: complete...OK. Method: average...OK. Method: weighted...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Dimension: 6 Number of points: 31 Real distance values: Method: single...OK. Method: complete...OK. Method: average...OK. Method: weighted...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Integer distance values: Method: single...OK. Method: complete...OK. Method: average...OK. Method: weighted...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Test program for the 'fastcluster' package. Copyright: * Until package version 1.1.23: (c) 2011 Daniel Müllner * All changes from version 1.1.24 on: (c) Google Inc. Test program for the 'fastcluster' package. Copyright: * Until package version 1.1.23: (c) 2011 Daniel Müllner * All changes from version 1.1.24 on: (c) Google Inc. Seed: 9376097 Dimension: 12 Number of points: 115 Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: yule...Method: single...OK. Metric: matching...Method: single...OK. Metric: dice...Method: single...OK. Metric: rogerstanimoto...Method: single...OK. Metric: russellrao...Method: single...OK. Metric: sokalsneath...Method: single...OK. Metric: euclidean...Method: single...OK. Metric: sqeuclidean...Method: single...OK. Metric: cityblock...Method: single...OK. Metric: chebychev...Method: single...OK. Metric: minkowski...p: 6.017089747072345...Method: single...OK. Metric: cosine...Method: single...OK. Metric: correlation...Method: single...OK. Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: canberra...Method: single...OK. Metric: braycurtis...Method: single...OK. Metric: seuclidean...Method: single...OK. Metric: mahalanobis...Method: single...OK. Metric: user...Method: single...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Dimension: 6 Number of points: 82 Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: yule...Method: single...OK. Metric: matching...Method: single...OK. Metric: dice...Method: single...OK. Metric: rogerstanimoto...Method: single...OK. Metric: russellrao...Method: single...OK. Metric: sokalsneath...Method: single...OK. Metric: euclidean...Method: single...OK. Metric: sqeuclidean...Method: single...OK. Metric: cityblock...Method: single...OK. Metric: chebychev...Method: single...OK. Metric: minkowski...p: 6.162770108905541...Method: single...OK. Metric: cosine...Method: single...OK. Metric: correlation...Method: single...OK. Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: canberra...Method: single...OK. Metric: braycurtis...Method: single...OK. Metric: seuclidean...Method: single...OK. Metric: mahalanobis...Method: single...OK. Metric: user...Method: single...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Dimension: 10 Number of points: 114 Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: yule...Method: single...OK. Metric: matching...Method: single...OK. Metric: dice...Method: single...OK. Metric: rogerstanimoto...Method: single...OK. Metric: russellrao...Method: single...OK. Metric: sokalsneath...Method: single...OK. Metric: euclidean...Method: single...OK. Metric: sqeuclidean...Method: single...OK. Metric: cityblock...Method: single...OK. Metric: chebychev...Method: single...OK. Metric: minkowski...p: 8.35738311270152...Method: single...OK. Metric: cosine...Method: single...OK. Metric: correlation...Method: single...OK. Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: canberra...Method: single...OK. Metric: braycurtis...Method: single...OK. Metric: seuclidean...Method: single...OK. Metric: mahalanobis...Method: single...OK. Metric: user...Method: single...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Dimension: 2 Number of points: 137 Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: yule...Method: single...OK. Metric: matching...Method: single...OK. Metric: dice...Method: single...OK. Metric: rogerstanimoto...Method: single...OK. Metric: russellrao...Method: single...OK. Metric: sokalsneath...Method: single...OK. Metric: euclidean...Method: single...OK. Metric: sqeuclidean...Method: single...OK. Metric: cityblock...Method: single...OK. Metric: chebychev...Method: single...OK. Metric: minkowski...p: 2.122140551508677...Method: single...OK. Metric: cosine...Skip this test: NaN dissimilarity value. ok ---------------------------------------------------------------------- Ran 3 tests in 71.422s OK Metric: correlation...Skip this test: NaN dissimilarity value. Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: canberra...Method: single...OK. Metric: braycurtis...Method: single...OK. Metric: seuclidean...Method: single...OK. Metric: mahalanobis...Method: single...OK. Metric: user...Method: single...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Dimension: 12 Number of points: 149 Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: yule...Method: single...OK. Metric: matching...Method: single...OK. Metric: dice...Method: single...OK. Metric: rogerstanimoto...Method: single...OK. Metric: russellrao...Method: single...OK. Metric: sokalsneath...Method: single...OK. Metric: euclidean...Method: single...OK. Metric: sqeuclidean...Method: single...OK. Metric: cityblock...Method: single...OK. Metric: chebychev...Method: single...OK. Metric: minkowski...p: 4.689602573085482...Method: single...OK. Metric: cosine...Method: single...OK. Metric: correlation...Method: single...OK. Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: canberra...Method: single...OK. Metric: braycurtis...Method: single...OK. Metric: seuclidean...Method: single...OK. Metric: mahalanobis...Method: single...OK. Metric: user...Method: single...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Dimension: 11 Number of points: 189 Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: yule...Method: single...OK. Metric: matching...Method: single...OK. Metric: dice...Method: single...OK. Metric: rogerstanimoto...Method: single...OK. Metric: russellrao...Method: single...OK. Metric: sokalsneath...Method: single...OK. Metric: euclidean...Method: single...OK. Metric: sqeuclidean...Method: single...OK. Metric: cityblock...Method: single...OK. Metric: chebychev...Method: single...OK. Metric: minkowski...p: 5.842411060663572...Method: single...OK. Metric: cosine...Method: single...OK. Metric: correlation...Method: single...OK. Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: canberra...Method: single...OK. Metric: braycurtis...Method: single...OK. Metric: seuclidean...Method: single...OK. Metric: mahalanobis...Method: single...OK. Metric: user...Method: single...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Dimension: 8 Number of points: 44 Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: yule...Method: single...OK. Metric: matching...Method: single...OK. Metric: dice...Method: single...OK. Metric: rogerstanimoto...Method: single...OK. Metric: russellrao...Method: single...OK. Metric: sokalsneath...Method: single...OK. Metric: euclidean...Method: single...OK. Metric: sqeuclidean...Method: single...OK. Metric: cityblock...Method: single...OK. Metric: chebychev...Method: single...OK. Metric: minkowski...p: 9.299555177384752...Method: single...OK. Metric: cosine...Method: single...OK. Metric: correlation...Method: single...OK. Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: canberra...Method: single...OK. Metric: braycurtis...Method: single...OK. Metric: seuclidean...Method: single...OK. Metric: mahalanobis...Method: single...OK. Metric: user...Method: single...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Dimension: 3 Number of points: 76 Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: yule...Method: single...OK. Metric: matching...Method: single...OK. Metric: dice...Method: single...OK. Metric: rogerstanimoto...Method: single...OK. Metric: russellrao...Method: single...OK. Metric: sokalsneath...Method: single...OK. Metric: euclidean...Method: single...OK. Metric: sqeuclidean...Method: single...OK. Metric: cityblock...Method: single...OK. Metric: chebychev...Method: single...OK. Metric: minkowski...p: 1.0795730839162472...Method: single...OK. Metric: cosine...Method: single...OK. Metric: correlation...Method: single...OK. Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: canberra...Method: single...OK. Metric: braycurtis...Method: single...OK. Metric: seuclidean...Method: single...OK. Metric: mahalanobis...Method: single...OK. Metric: user...Method: single...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Dimension: 5 Number of points: 19 Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: yule...Method: single...OK. Metric: matching...Method: single...OK. Metric: dice...Method: single...OK. Metric: rogerstanimoto...Method: single...OK. Metric: russellrao...Method: single...OK. Metric: sokalsneath...Method: single...OK. Metric: euclidean...Method: single...OK. Metric: sqeuclidean...Method: single...OK. Metric: cityblock...Method: single...OK. Metric: chebychev...Method: single...OK. Metric: minkowski...p: 5.634651886596508...Method: single...OK. Metric: cosine...Method: single...OK. Metric: correlation...Method: single...OK. Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: canberra...Method: single...OK. Metric: braycurtis...Method: single...OK. Metric: seuclidean...Method: single...OK. Metric: mahalanobis...Method: single...OK. Metric: user...Method: single...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Dimension: 3 Number of points: 114 Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: yule...Method: single...OK. Metric: matching...Method: single...OK. Metric: dice...Method: single...OK. Metric: rogerstanimoto...Method: single...OK. Metric: russellrao...Method: single...OK. Metric: sokalsneath...Method: single...OK. Metric: euclidean...Method: single...OK. Metric: sqeuclidean...Method: single...OK. Metric: cityblock...Method: single...OK. Metric: chebychev...Method: single...OK. Metric: minkowski...p: 8.797299936439254...Method: single...OK. Metric: cosine...Method: single...OK. Metric: correlation...Method: single...OK. Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: canberra...Method: single...OK. Metric: braycurtis...Method: single...OK. Metric: seuclidean...Method: single...OK. Metric: mahalanobis...Method: single...OK. Metric: user...Method: single...OK. Method: ward...OK. Method: centroid...OK. Method: median...OK. Seed: 9376097 Seed: 592319876 Seed: 585308924 create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild -O--sourcedirectory=src/python dh_prep -O--buildsystem=pybuild -O--sourcedirectory=src/python debian/rules override_dh_auto_install make[1]: Entering directory '/build/r-cran-fastcluster-1.2.3' dh_auto_install -O--buildsystem=R --sourcedirectory=/build/r-cran-fastcluster-1.2.3 I: R packages needed for DEP8: runit I: R Package: fastcluster Version: 1.2.3 I: Building using R version 4.2.2.20221110-2 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Wed, 01 Feb 2023 10:18:00 +0100 mkdir -p /build/r-cran-fastcluster-1.2.3/debian/tmp/usr/lib/R/site-library R CMD INSTALL -l /build/r-cran-fastcluster-1.2.3/debian/tmp/usr/lib/R/site-library --clean . "--built-timestamp='Wed, 01 Feb 2023 10:18:00 +0100'" * installing *source* package ‘fastcluster’ ... files ‘src/python/fastcluster.pyc’, ‘src/python/tests/__init__.pyc’, ‘src/python/tests/__pycache__/__init__.cpython-38.pyc’, ‘src/python/tests/__pycache__/nantest.cpython-38.pyc’, ‘src/python/tests/__pycache__/test.cpython-38.pyc’, ‘src/python/tests/__pycache__/vectortest.cpython-38.pyc’, ‘src/python/tests/test.pyc’ are missing ** using staged installation ** libs make[2]: Entering directory '/build/r-cran-fastcluster-1.2.3/src' g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-wZDgjM/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fastcluster_R.cpp -o fastcluster_R.o In file included from fastcluster_R.cpp:24: fastcluster.cpp:53:35: note: ‘#pragma message: Use fenv header.’ 53 | #pragma message("Use fenv header.") | ^ g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-z,relro -o fastcluster.so fastcluster_R.o -L/usr/lib/R/lib -lR make[2]: Leaving directory '/build/r-cran-fastcluster-1.2.3/src' make[2]: Entering directory '/build/r-cran-fastcluster-1.2.3/src' make[2]: Leaving directory '/build/r-cran-fastcluster-1.2.3/src' installing to /build/r-cran-fastcluster-1.2.3/debian/tmp/usr/lib/R/site-library/00LOCK-r-cran-fastcluster-1.2.3/00new/fastcluster/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastcluster) rm -f /build/r-cran-fastcluster-1.2.3/debian/tmp/usr/lib/R/site-library/fastcluster/LICENSE W: Ignoring specified R dependency: R (>= 3.0.0) I: Using r-cran-runit for Recommends:runit I: Use r-cran-fastcluster as Debian binary package for variables substitution mv debian/tmp tmp-install dh_auto_install I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/r-cran-fastcluster-1.2.3/debian/python3-fastcluster Fastcluster version: 1.2.3 Python version: 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running build_ext running install_lib creating /build/r-cran-fastcluster-1.2.3/debian/python3-fastcluster creating /build/r-cran-fastcluster-1.2.3/debian/python3-fastcluster/usr creating /build/r-cran-fastcluster-1.2.3/debian/python3-fastcluster/usr/lib creating /build/r-cran-fastcluster-1.2.3/debian/python3-fastcluster/usr/lib/python3.11 creating /build/r-cran-fastcluster-1.2.3/debian/python3-fastcluster/usr/lib/python3.11/dist-packages copying /build/r-cran-fastcluster-1.2.3/.pybuild/cpython3_3.11_fastcluster/build/_fastcluster.cpython-311-x86_64-linux-gnu.so -> /build/r-cran-fastcluster-1.2.3/debian/python3-fastcluster/usr/lib/python3.11/dist-packages copying /build/r-cran-fastcluster-1.2.3/.pybuild/cpython3_3.11_fastcluster/build/fastcluster.py -> /build/r-cran-fastcluster-1.2.3/debian/python3-fastcluster/usr/lib/python3.11/dist-packages byte-compiling /build/r-cran-fastcluster-1.2.3/debian/python3-fastcluster/usr/lib/python3.11/dist-packages/fastcluster.py to fastcluster.cpython-311.pyc running install_egg_info running egg_info writing fastcluster.egg-info/PKG-INFO writing dependency_links to fastcluster.egg-info/dependency_links.txt writing requirements to fastcluster.egg-info/requires.txt writing top-level names to fastcluster.egg-info/top_level.txt reading manifest file 'fastcluster.egg-info/SOURCES.txt' writing manifest file 'fastcluster.egg-info/SOURCES.txt' Copying fastcluster.egg-info to /build/r-cran-fastcluster-1.2.3/debian/python3-fastcluster/usr/lib/python3.11/dist-packages/fastcluster-1.2.3.egg-info Skipping SOURCES.txt running install_scripts make[1]: Leaving directory '/build/r-cran-fastcluster-1.2.3' debian/rules override_dh_install make[1]: Entering directory '/build/r-cran-fastcluster-1.2.3' dh_numpy3 dh_install find debian -name LICENSE -delete make[1]: Leaving directory '/build/r-cran-fastcluster-1.2.3' dh_installdocs -O--buildsystem=pybuild -O--sourcedirectory=src/python dh_installchangelogs -O--buildsystem=pybuild -O--sourcedirectory=src/python dh_python3 -O--buildsystem=pybuild -O--sourcedirectory=src/python dh_installsystemduser -O--buildsystem=pybuild -O--sourcedirectory=src/python dh_perl -O--buildsystem=pybuild -O--sourcedirectory=src/python dh_link -O--buildsystem=pybuild -O--sourcedirectory=src/python dh_strip_nondeterminism -O--buildsystem=pybuild -O--sourcedirectory=src/python dh_compress -O--buildsystem=pybuild -O--sourcedirectory=src/python dh_fixperms -O--buildsystem=pybuild -O--sourcedirectory=src/python dh_missing -O--buildsystem=pybuild -O--sourcedirectory=src/python dh_dwz -a -O--buildsystem=pybuild -O--sourcedirectory=src/python dh_strip -a -O--buildsystem=pybuild -O--sourcedirectory=src/python dh_makeshlibs -a -O--buildsystem=pybuild -O--sourcedirectory=src/python dh_shlibdeps -a -O--buildsystem=pybuild -O--sourcedirectory=src/python dh_installdeb -O--buildsystem=pybuild -O--sourcedirectory=src/python dh_gencontrol -O--buildsystem=pybuild -O--sourcedirectory=src/python dpkg-gencontrol: warning: package r-cran-fastcluster: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package r-cran-fastcluster: substitution variable ${python3:Depends} unused, but is defined dh_md5sums -O--buildsystem=pybuild -O--sourcedirectory=src/python dh_builddeb -O--buildsystem=pybuild -O--sourcedirectory=src/python dpkg-deb: building package 'r-cran-fastcluster' in '../r-cran-fastcluster_1.2.3-2_amd64.deb'. dpkg-deb: building package 'r-cran-fastcluster-dbgsym' in '../r-cran-fastcluster-dbgsym_1.2.3-2_amd64.deb'. dpkg-deb: building package 'python3-fastcluster' in '../python3-fastcluster_1.2.3-2_amd64.deb'. dpkg-deb: building package 'python3-fastcluster-dbgsym' in '../python3-fastcluster-dbgsym_1.2.3-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../r-cran-fastcluster_1.2.3-2_amd64.buildinfo dpkg-genchanges --build=binary -O../r-cran-fastcluster_1.2.3-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/603493 and its subdirectories I: Current time: Wed May 15 19:50:09 -12 2024 I: pbuilder-time-stamp: 1715845809 Fri Apr 14 01:27:09 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Fri Apr 14 01:27:09 UTC 2023 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Fri Apr 14 01:41:55 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Fri Apr 14 01:41:55 UTC 2023 I: r-cran-fastcluster_1.2.3-2_amd64.changes: Format: 1.8 Date: Wed, 01 Feb 2023 10:18:00 +0100 Source: r-cran-fastcluster Binary: python3-fastcluster python3-fastcluster-dbgsym r-cran-fastcluster r-cran-fastcluster-dbgsym Architecture: amd64 Version: 1.2.3-2 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Andreas Tille Description: python3-fastcluster - Fast hierarchical clustering routines for Python 3 r-cran-fastcluster - Fast hierarchical clustering routines for GNU R Closes: 1030145 Changes: r-cran-fastcluster (1.2.3-2) unstable; urgency=medium . * Disable reprotest * Disable blhc * Fix copyright Closes: #1030145 * Standards-Version: 4.6.2 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) Checksums-Sha1: b5436f150cd209794d87533c7da841fa61cc1f41 132692 python3-fastcluster-dbgsym_1.2.3-2_amd64.deb 0c0da7ccf4ba737736e4a777d442416f742c34ed 39372 python3-fastcluster_1.2.3-2_amd64.deb 08adfcc99743812435ddb5e9e90bbb732f965594 113324 r-cran-fastcluster-dbgsym_1.2.3-2_amd64.deb 6571353dbd89bcfb4df9c0ab4b957002b9fd0bc4 11692 r-cran-fastcluster_1.2.3-2_amd64.buildinfo cb5614f4c22db7477db1289d4aa899386092aeb4 187800 r-cran-fastcluster_1.2.3-2_amd64.deb Checksums-Sha256: 93d3b5b0853f4a17012c2e3dc442755e5a8bf5d0a0ed9ac7aa6a18798c96fc7a 132692 python3-fastcluster-dbgsym_1.2.3-2_amd64.deb e21b00665ecc6e07de84b2fb1f949dce5c7adf115efa2788050cc55ab5a607b5 39372 python3-fastcluster_1.2.3-2_amd64.deb b7b9334ae2b63a9f05f255b35e039bc43c453e8c7590287fffa6276686858c1f 113324 r-cran-fastcluster-dbgsym_1.2.3-2_amd64.deb 5c1847957346bf5710c127213f729d030ff09c3aec830333e714e6474864a207 11692 r-cran-fastcluster_1.2.3-2_amd64.buildinfo bb4884f106d6acc573fd0411ba7b8e71c4052dd763056278c7851e675e979df5 187800 r-cran-fastcluster_1.2.3-2_amd64.deb Files: 417c9c8323194c79cdb4b7008458bc9d 132692 debug optional python3-fastcluster-dbgsym_1.2.3-2_amd64.deb 2e0eef6a2c24fe746c9cd70c9d5a367d 39372 python optional python3-fastcluster_1.2.3-2_amd64.deb d9b998b842f5a93c80d87efe67e3c1f2 113324 debug optional r-cran-fastcluster-dbgsym_1.2.3-2_amd64.deb 6aab9169157357b795f9075026b22faf 11692 gnu-r optional r-cran-fastcluster_1.2.3-2_amd64.buildinfo 1fed72f530d180d6d3137f8ba1a2daee 187800 gnu-r optional r-cran-fastcluster_1.2.3-2_amd64.deb Fri Apr 14 01:41:56 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.oSpe3iCy/r-cran-fastcluster_1.2.3-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.oSpe3iCy/r-cran-fastcluster_1.2.3-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.oSpe3iCy/r-cran-fastcluster_1.2.3-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.oSpe3iCy/b1/r-cran-fastcluster_1.2.3-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.oSpe3iCy/b2/r-cran-fastcluster_1.2.3-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.371s) 0.371s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.056s) 0.056s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Fri Apr 14 01:41:57 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Fri Apr 14 01:41:57 UTC 2023 I: r-cran-fastcluster from bookworm built successfully and reproducibly on amd64. Fri Apr 14 01:42:00 UTC 2023 I: Submitting .buildinfo files to external archives: Fri Apr 14 01:42:00 UTC 2023 I: Submitting 16K b1/r-cran-fastcluster_1.2.3-2_amd64.buildinfo.asc Fri Apr 14 01:42:02 UTC 2023 I: Submitting 16K b2/r-cran-fastcluster_1.2.3-2_amd64.buildinfo.asc Fri Apr 14 01:42:03 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Apr 14 01:42:03 UTC 2023 I: Done submitting .buildinfo files. Fri Apr 14 01:42:03 UTC 2023 I: Removing signed r-cran-fastcluster_1.2.3-2_amd64.buildinfo.asc files: removed './b1/r-cran-fastcluster_1.2.3-2_amd64.buildinfo.asc' removed './b2/r-cran-fastcluster_1.2.3-2_amd64.buildinfo.asc'