Sun May 21 05:18:34 UTC 2023 I: starting to build r-bioc-dexseq/bookworm/amd64 on jenkins on '2023-05-21 05:18'
Sun May 21 05:18:34 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_6/14851/console.log
Sun May 21 05:18:34 UTC 2023 I: Downloading source for bookworm/r-bioc-dexseq=1.44.0+dfsg-1
--2023-05-21 05:18:35-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/r-bioc-dexseq/r-bioc-dexseq_1.44.0%2bdfsg-1.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2420 (2.4K) [text/prs.lines.tag]
Saving to: ‘r-bioc-dexseq_1.44.0+dfsg-1.dsc’
0K .. 100% 214M=0s
2023-05-21 05:18:35 (214 MB/s) - ‘r-bioc-dexseq_1.44.0+dfsg-1.dsc’ saved [2420/2420]
Sun May 21 05:18:35 UTC 2023 I: r-bioc-dexseq_1.44.0+dfsg-1.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: r-bioc-dexseq
Binary: r-bioc-dexseq
Architecture: all
Version: 1.44.0+dfsg-1
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Michael R. Crusoe <crusoe@debian.org>
Homepage: https://bioconductor.org/packages/DEXSeq/
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-dexseq
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-dexseq.git
Testsuite: autopkgtest-pkg-r
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocparallel, r-bioc-biobase, r-bioc-summarizedexperiment, r-bioc-iranges, r-bioc-genomicranges, r-bioc-deseq2, r-bioc-annotationdbi, r-cran-rcolorbrewer, r-bioc-s4vectors (>= 0.23.18), r-bioc-biocgenerics, r-bioc-biomart, r-cran-hwriter, r-cran-stringr, r-bioc-rsamtools, r-cran-statmod, r-bioc-geneplotter, r-bioc-genefilter
Package-List:
r-bioc-dexseq deb gnu-r optional arch=all
Checksums-Sha1:
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1af160b8224cb62b8937fc4eb1169f56356ca8a7 2656 r-bioc-dexseq_1.44.0+dfsg-1.debian.tar.xz
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a236543525624f8db8ab7b381eb7b12c864905e54162d1e317a09513250e7d93 2656 r-bioc-dexseq_1.44.0+dfsg-1.debian.tar.xz
Files:
b4a7c8bd82ba4d1288e08c9ea72cda35 49224 r-bioc-dexseq_1.44.0+dfsg.orig.tar.xz
e75bb432f0bb497ad290f295cd3ff943 2656 r-bioc-dexseq_1.44.0+dfsg-1.debian.tar.xz
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Sun May 21 05:18:35 UTC 2023 I: Checking whether the package is not for us
Sun May 21 05:18:35 UTC 2023 I: Starting 1st build on remote node ionos5-amd64.debian.net.
Sun May 21 05:18:35 UTC 2023 I: Preparing to do remote build '1' on ionos5-amd64.debian.net.
Sun May 21 05:21:09 UTC 2023 I: Deleting $TMPDIR on ionos5-amd64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Fri Jun 21 23:41:38 -12 2024
I: pbuilder-time-stamp: 1719056498
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [r-bioc-dexseq_1.44.0+dfsg-1.dsc]
I: copying [./r-bioc-dexseq_1.44.0+dfsg.orig.tar.xz]
I: copying [./r-bioc-dexseq_1.44.0+dfsg-1.debian.tar.xz]
I: Extracting source
gpgv: Signature made Mon Nov 21 18:32:34 2022 -12
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-bioc-dexseq_1.44.0+dfsg-1.dsc: no acceptable signature found
dpkg-source: info: extracting r-bioc-dexseq in r-bioc-dexseq-1.44.0+dfsg
dpkg-source: info: unpacking r-bioc-dexseq_1.44.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-dexseq_1.44.0+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying Fix_autopkgtest.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/2911926/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='amd64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 '
DISTRIBUTION='bookworm'
HOME='/root'
HOST_ARCH='amd64'
IFS='
'
INVOCATION_ID='f607881a60b04a1ea441dd5fb7ecd1f1'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='2911926'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8dOQ9qlh/pbuilderrc_nqfJ --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8dOQ9qlh/b1 --logfile b1/build.log r-bioc-dexseq_1.44.0+dfsg-1.dsc'
SUDO_GID='110'
SUDO_UID='105'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://85.184.249.68:3128'
I: uname -a
Linux ionos5-amd64 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux
I: ls -l /bin
total 5632
-rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash
-rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2
-rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep
-rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2
-rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore
-rwxr-xr-x 1 root root 44016 Sep 20 2022 cat
-rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp
-rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod
-rwxr-xr-x 1 root root 72752 Sep 20 2022 chown
-rwxr-xr-x 1 root root 151152 Sep 20 2022 cp
-rwxr-xr-x 1 root root 125640 Jan 5 2023 dash
-rwxr-xr-x 1 root root 121904 Sep 20 2022 date
-rwxr-xr-x 1 root root 89240 Sep 20 2022 dd
-rwxr-xr-x 1 root root 102200 Sep 20 2022 df
-rwxr-xr-x 1 root root 151344 Sep 20 2022 dir
-rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg
lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname
-rwxr-xr-x 1 root root 43856 Sep 20 2022 echo
-rwxr-xr-x 1 root root 41 Jan 24 2023 egrep
-rwxr-xr-x 1 root root 35664 Sep 20 2022 false
-rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep
-rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt
-rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount
-rwxr-xr-x 1 root root 203152 Jan 24 2023 grep
-rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe
-rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip
-rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname
-rwxr-xr-x 1 root root 72824 Sep 20 2022 ln
-rwxr-xr-x 1 root root 53024 Mar 23 2023 login
-rwxr-xr-x 1 root root 151344 Sep 20 2022 ls
-rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk
-rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir
-rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod
-rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp
-rwxr-xr-x 1 root root 59712 Mar 22 2023 more
-rwsr-xr-x 1 root root 59704 Mar 22 2023 mount
-rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint
-rwxr-xr-x 1 root root 142968 Sep 20 2022 mv
lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd
lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash
-rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink
-rwxr-xr-x 1 root root 72752 Sep 20 2022 rm
-rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir
-rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts
-rwxr-xr-x 1 root root 126424 Jan 5 2023 sed
lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash
-rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep
-rwxr-xr-x 1 root root 85008 Sep 20 2022 stty
-rwsr-xr-x 1 root root 72000 Mar 22 2023 su
-rwxr-xr-x 1 root root 39824 Sep 20 2022 sync
-rwxr-xr-x 1 root root 531984 Apr 6 2023 tar
-rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile
-rwxr-xr-x 1 root root 109616 Sep 20 2022 touch
-rwxr-xr-x 1 root root 35664 Sep 20 2022 true
-rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server
-rwsr-xr-x 1 root root 35128 Mar 22 2023 umount
-rwxr-xr-x 1 root root 43888 Sep 20 2022 uname
-rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress
-rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir
-rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl
lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp
-rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce
-rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 9 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 9 2022 znew
I: user script /srv/workspace/pbuilder/2911926/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocparallel, r-bioc-biobase, r-bioc-summarizedexperiment, r-bioc-iranges, r-bioc-genomicranges, r-bioc-deseq2, r-bioc-annotationdbi, r-cran-rcolorbrewer, r-bioc-s4vectors (>= 0.23.18), r-bioc-biocgenerics, r-bioc-biomart, r-cran-hwriter, r-cran-stringr, r-bioc-rsamtools, r-cran-statmod, r-bioc-geneplotter, r-bioc-genefilter
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19596 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-r; however:
Package dh-r is not installed.
pbuilder-satisfydepends-dummy depends on r-base-dev; however:
Package r-base-dev is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-biocparallel; however:
Package r-bioc-biocparallel is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-biobase; however:
Package r-bioc-biobase is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-summarizedexperiment; however:
Package r-bioc-summarizedexperiment is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-iranges; however:
Package r-bioc-iranges is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-genomicranges; however:
Package r-bioc-genomicranges is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-deseq2; however:
Package r-bioc-deseq2 is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-annotationdbi; however:
Package r-bioc-annotationdbi is not installed.
pbuilder-satisfydepends-dummy depends on r-cran-rcolorbrewer; however:
Package r-cran-rcolorbrewer is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors (>= 0.23.18); however:
Package r-bioc-s4vectors is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics; however:
Package r-bioc-biocgenerics is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-biomart; however:
Package r-bioc-biomart is not installed.
pbuilder-satisfydepends-dummy depends on r-cran-hwriter; however:
Package r-cran-hwriter is not installed.
pbuilder-satisfydepends-dummy depends on r-cran-stringr; however:
Package r-cran-stringr is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-rsamtools; however:
Package r-bioc-rsamtools is not installed.
pbuilder-satisfydepends-dummy depends on r-cran-statmod; however:
Package r-cran-statmod is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-geneplotter; however:
Package r-bioc-geneplotter is not installed.
pbuilder-satisfydepends-dummy depends on r-bioc-genefilter; however:
Package r-bioc-genefilter is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcurl3-gnutls{a} libcurl4{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-12-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre16-3{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpcre3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libreadline-dev{a} libreadline8{a} libregexp-ipv6-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsm6{a} libssh2-1{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} littler{a} m4{a} man-db{a} node-html5shiv{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-annotate{a} r-bioc-annotationdbi{a} r-bioc-biobase{a} r-bioc-biocfilecache{a} r-bioc-biocgenerics{a} r-bioc-biocparallel{a} r-bioc-biomart{a} r-bioc-biostrings{a} r-bioc-delayedarray{a} r-bioc-deseq2{a} r-bioc-genefilter{a} r-bioc-geneplotter{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicranges{a} r-bioc-iranges{a} r-bioc-keggrest{a} r-bioc-matrixgenerics{a} r-bioc-rhtslib{a} r-bioc-rsamtools{a} r-bioc-s4vectors{a} r-bioc-summarizedexperiment{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-askpass{a} r-cran-assertthat{a} r-cran-bh{a} r-cran-bit{a} r-cran-bit64{a} r-cran-bitops{a} r-cran-blob{a} r-cran-cachem{a} r-cran-cli{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-curl{a} r-cran-dbi{a} r-cran-dbplyr{a} r-cran-digest{a} r-cran-dplyr{a} r-cran-ellipsis{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fastmap{a} r-cran-filelock{a} r-cran-formatr{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-generics{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gtable{a} r-cran-hms{a} r-cran-httr{a} r-cran-hwriter{a} r-cran-isoband{a} r-cran-jsonlite{a} r-cran-labeling{a} r-cran-lambda.r{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-locfit{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-memoise{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-openssl{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plogr{a} r-cran-png{a} r-cran-prettyunits{a} r-cran-progress{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcpparmadillo{a} r-cran-rcurl{a} r-cran-rlang{a} r-cran-rsqlite{a} r-cran-scales{a} r-cran-snow{a} r-cran-statmod{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-survival{a} r-cran-sys{a} r-cran-tibble{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridislite{a} r-cran-withr{a} r-cran-xml{a} r-cran-xml2{a} r-cran-xtable{a} readline-common{a} sensible-utils{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
bzip2-doc cme curl devscripts git-buildpackage javascript-common libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-cran-bench r-cran-brio r-cran-broom r-cran-callr r-cran-class r-cran-covr r-cran-data.table r-cran-dbitest r-cran-decor r-cran-formattable r-cran-hexbin r-cran-hmisc r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-interp r-cran-knitr r-cran-lobstr r-cran-lubridate r-cran-mapproj r-cran-maps r-cran-maptools r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-pkgload r-cran-quantreg r-cran-ragg r-cran-rmarkdown r-cran-rmysql r-cran-rpart r-cran-rpostgresql r-cran-runit r-cran-sf r-cran-sodium r-cran-sp r-cran-svglite r-cran-testit r-cran-testthat r-cran-tidyr r-cran-vdiffr r-cran-waldo r-cran-webutils r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs
0 packages upgraded, 289 newly installed, 0 to remove and 0 not upgraded.
Need to get 223 MB of archives. After unpacking 637 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB]
Get: 2 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 3 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.8-1 [1407 kB]
Get: 4 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB]
Get: 5 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB]
Get: 6 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB]
Get: 7 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB]
Get: 8 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB]
Get: 9 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB]
Get: 10 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB]
Get: 11 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB]
Get: 12 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB]
Get: 13 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB]
Get: 14 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043+nmu1 [55.2 kB]
Get: 15 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB]
Get: 16 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB]
Get: 17 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 18 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get: 19 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB]
Get: 20 http://deb.debian.org/debian bookworm/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB]
Get: 21 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 22 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB]
Get: 23 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 24 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 25 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B]
Get: 26 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 27 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 28 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB]
Get: 29 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB]
Get: 30 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB]
Get: 31 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB]
Get: 32 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB]
Get: 33 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 34 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 35 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB]
Get: 36 http://deb.debian.org/debian bookworm/main amd64 zip amd64 3.0-13 [230 kB]
Get: 37 http://deb.debian.org/debian bookworm/main amd64 unzip amd64 6.0-28 [166 kB]
Get: 38 http://deb.debian.org/debian bookworm/main amd64 libpaper1 amd64 1.1.29 [12.5 kB]
Get: 39 http://deb.debian.org/debian bookworm/main amd64 libpaper-utils amd64 1.1.29 [8868 B]
Get: 40 http://deb.debian.org/debian bookworm/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB]
Get: 41 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB]
Get: 42 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB]
Get: 43 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB]
Get: 44 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB]
Get: 45 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5 [399 kB]
Get: 46 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB]
Get: 47 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB]
Get: 48 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB]
Get: 49 http://deb.debian.org/debian bookworm/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB]
Get: 50 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB]
Get: 51 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB]
Get: 52 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB]
Get: 53 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB]
Get: 54 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2 [292 kB]
Get: 55 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2 [759 kB]
Get: 56 http://deb.debian.org/debian bookworm/main amd64 libxcb-render0 amd64 1.15-1 [115 kB]
Get: 57 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB]
Get: 58 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB]
Get: 59 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB]
Get: 60 http://deb.debian.org/debian bookworm/main amd64 libcairo2 amd64 1.16.0-7 [575 kB]
Get: 61 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB]
Get: 62 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB]
Get: 63 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB]
Get: 64 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB]
Get: 65 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB]
Get: 66 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB]
Get: 67 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB]
Get: 68 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-9 [386 kB]
Get: 69 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB]
Get: 70 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB]
Get: 71 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB]
Get: 72 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB]
Get: 73 http://deb.debian.org/debian bookworm/main amd64 fontconfig amd64 2.14.1-4 [449 kB]
Get: 74 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB]
Get: 75 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB]
Get: 76 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB]
Get: 77 http://deb.debian.org/debian bookworm/main amd64 libthai-data all 0.1.29-1 [176 kB]
Get: 78 http://deb.debian.org/debian bookworm/main amd64 libdatrie1 amd64 0.2.13-2+b1 [43.3 kB]
Get: 79 http://deb.debian.org/debian bookworm/main amd64 libthai0 amd64 0.1.29-1 [57.5 kB]
Get: 80 http://deb.debian.org/debian bookworm/main amd64 libpango-1.0-0 amd64 1.50.12+ds-1 [212 kB]
Get: 81 http://deb.debian.org/debian bookworm/main amd64 libpangoft2-1.0-0 amd64 1.50.12+ds-1 [47.4 kB]
Get: 82 http://deb.debian.org/debian bookworm/main amd64 libpangocairo-1.0-0 amd64 1.50.12+ds-1 [34.2 kB]
Get: 83 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB]
Get: 84 http://deb.debian.org/debian bookworm/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [1035 kB]
Get: 85 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB]
Get: 86 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB]
Get: 87 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB]
Get: 88 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.1 [285 kB]
Get: 89 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-5 [316 kB]
Get: 90 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB]
Get: 91 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB]
Get: 92 http://deb.debian.org/debian bookworm/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB]
Get: 93 http://deb.debian.org/debian bookworm/main amd64 libtk8.6 amd64 8.6.13-2 [781 kB]
Get: 94 http://deb.debian.org/debian bookworm/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB]
Get: 95 http://deb.debian.org/debian bookworm/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB]
Get: 96 http://deb.debian.org/debian bookworm/main amd64 libxt6 amd64 1:1.2.1-1.1 [186 kB]
Get: 97 http://deb.debian.org/debian bookworm/main amd64 r-base-core amd64 4.2.2.20221110-2 [26.0 MB]
Get: 98 http://deb.debian.org/debian bookworm/main amd64 libgfortran-12-dev amd64 12.2.0-14 [834 kB]
Get: 99 http://deb.debian.org/debian bookworm/main amd64 gfortran-12 amd64 12.2.0-14 [10.2 MB]
Get: 100 http://deb.debian.org/debian bookworm/main amd64 gfortran amd64 4:12.2.0-3 [1428 B]
Get: 101 http://deb.debian.org/debian bookworm/main amd64 libblas-dev amd64 3.11.0-2 [158 kB]
Get: 102 http://deb.debian.org/debian bookworm/main amd64 liblapack-dev amd64 3.11.0-2 [4631 kB]
Get: 103 http://deb.debian.org/debian bookworm/main amd64 libncurses6 amd64 6.4-4 [103 kB]
Get: 104 http://deb.debian.org/debian bookworm/main amd64 libncurses-dev amd64 6.4-4 [349 kB]
Get: 105 http://deb.debian.org/debian bookworm/main amd64 libncurses5-dev amd64 6.4-4 [932 B]
Get: 106 http://deb.debian.org/debian bookworm/main amd64 libreadline-dev amd64 8.2-1.3 [151 kB]
Get: 107 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-2 [290 kB]
Get: 108 http://deb.debian.org/debian bookworm/main amd64 libjpeg-dev amd64 1:2.1.5-2 [71.8 kB]
Get: 109 http://deb.debian.org/debian bookworm/main amd64 libpcre2-16-0 amd64 10.42-1 [245 kB]
Get: 110 http://deb.debian.org/debian bookworm/main amd64 libpcre2-32-0 amd64 10.42-1 [234 kB]
Get: 111 http://deb.debian.org/debian bookworm/main amd64 libpcre2-posix3 amd64 10.42-1 [55.4 kB]
Get: 112 http://deb.debian.org/debian bookworm/main amd64 libpcre2-dev amd64 10.42-1 [753 kB]
Get: 113 http://deb.debian.org/debian bookworm/main amd64 libpcre3 amd64 2:8.39-15 [341 kB]
Get: 114 http://deb.debian.org/debian bookworm/main amd64 libpcre16-3 amd64 2:8.39-15 [257 kB]
Get: 115 http://deb.debian.org/debian bookworm/main amd64 libpcre32-3 amd64 2:8.39-15 [248 kB]
Get: 116 http://deb.debian.org/debian bookworm/main amd64 libpcrecpp0v5 amd64 2:8.39-15 [143 kB]
Get: 117 http://deb.debian.org/debian bookworm/main amd64 libpcre3-dev amd64 2:8.39-15 [653 kB]
Get: 118 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB]
Get: 119 http://deb.debian.org/debian bookworm/main amd64 libpng-dev amd64 1.6.39-2 [359 kB]
Get: 120 http://deb.debian.org/debian bookworm/main amd64 libbz2-dev amd64 1.0.8-5+b1 [30.9 kB]
Get: 121 http://deb.debian.org/debian bookworm/main amd64 liblzma-dev amd64 5.4.1-0.2 [260 kB]
Get: 122 http://deb.debian.org/debian bookworm/main amd64 icu-devtools amd64 72.1-3 [206 kB]
Get: 123 http://deb.debian.org/debian bookworm/main amd64 libicu-dev amd64 72.1-3 [10.3 MB]
Get: 124 http://deb.debian.org/debian bookworm/main amd64 libxmuu1 amd64 2:1.1.3-3 [23.9 kB]
Get: 125 http://deb.debian.org/debian bookworm/main amd64 xauth amd64 1:1.1.2-1 [36.0 kB]
Get: 126 http://deb.debian.org/debian bookworm/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB]
Get: 127 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB]
Get: 128 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB]
Get: 129 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB]
Get: 130 http://deb.debian.org/debian bookworm/main amd64 r-base-dev all 4.2.2.20221110-2 [4492 B]
Get: 131 http://deb.debian.org/debian bookworm/main amd64 libfile-which-perl all 1.27-2 [15.1 kB]
Get: 132 http://deb.debian.org/debian bookworm/main amd64 libswitch-perl all 2.17-3 [20.3 kB]
Get: 133 http://deb.debian.org/debian bookworm/main amd64 libclone-perl amd64 0.46-1 [13.7 kB]
Get: 134 http://deb.debian.org/debian bookworm/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB]
Get: 135 http://deb.debian.org/debian bookworm/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get: 136 http://deb.debian.org/debian bookworm/main amd64 libhttp-date-perl all 6.05-2 [10.5 kB]
Get: 137 http://deb.debian.org/debian bookworm/main amd64 libio-html-perl all 1.004-3 [16.2 kB]
Get: 138 http://deb.debian.org/debian bookworm/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get: 139 http://deb.debian.org/debian bookworm/main amd64 libregexp-ipv6-perl all 0.03-3 [5212 B]
Get: 140 http://deb.debian.org/debian bookworm/main amd64 liburi-perl all 5.17-1 [90.4 kB]
Get: 141 http://deb.debian.org/debian bookworm/main amd64 libhttp-message-perl all 6.44-1 [81.7 kB]
Get: 142 http://deb.debian.org/debian bookworm/main amd64 libparams-util-perl amd64 1.102-2+b1 [24.8 kB]
Get: 143 http://deb.debian.org/debian bookworm/main amd64 libsub-install-perl all 0.929-1 [10.5 kB]
Get: 144 http://deb.debian.org/debian bookworm/main amd64 libdata-optlist-perl all 0.113-1 [10.6 kB]
Get: 145 http://deb.debian.org/debian bookworm/main amd64 libb-hooks-op-check-perl amd64 0.22-2+b1 [10.5 kB]
Get: 146 http://deb.debian.org/debian bookworm/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get: 147 http://deb.debian.org/debian bookworm/main amd64 libdevel-callchecker-perl amd64 0.008-2 [15.8 kB]
Get: 148 http://deb.debian.org/debian bookworm/main amd64 libparams-classify-perl amd64 0.015-2+b1 [23.1 kB]
Get: 149 http://deb.debian.org/debian bookworm/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get: 150 http://deb.debian.org/debian bookworm/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB]
Get: 151 http://deb.debian.org/debian bookworm/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get: 152 http://deb.debian.org/debian bookworm/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB]
Get: 153 http://deb.debian.org/debian bookworm/main amd64 libclass-load-perl all 0.25-2 [15.3 kB]
Get: 154 http://deb.debian.org/debian bookworm/main amd64 libclass-load-xs-perl amd64 0.10-2+b1 [14.0 kB]
Get: 155 http://deb.debian.org/debian bookworm/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get: 156 http://deb.debian.org/debian bookworm/main amd64 libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get: 157 http://deb.debian.org/debian bookworm/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get: 158 http://deb.debian.org/debian bookworm/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB]
Get: 159 http://deb.debian.org/debian bookworm/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB]
Get: 160 http://deb.debian.org/debian bookworm/main amd64 libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get: 161 http://deb.debian.org/debian bookworm/main amd64 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get: 162 http://deb.debian.org/debian bookworm/main amd64 libsub-exporter-perl all 0.989-1 [50.5 kB]
Get: 163 http://deb.debian.org/debian bookworm/main amd64 libeval-closure-perl all 0.14-3 [11.2 kB]
Get: 164 http://deb.debian.org/debian bookworm/main amd64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get: 165 http://deb.debian.org/debian bookworm/main amd64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get: 166 http://deb.debian.org/debian bookworm/main amd64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get: 167 http://deb.debian.org/debian bookworm/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b1 [19.8 kB]
Get: 168 http://deb.debian.org/debian bookworm/main amd64 libmoose-perl amd64 2.2203-1 [794 kB]
Get: 169 http://deb.debian.org/debian bookworm/main amd64 libvariable-magic-perl amd64 0.63-1+b1 [44.0 kB]
Get: 170 http://deb.debian.org/debian bookworm/main amd64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get: 171 http://deb.debian.org/debian bookworm/main amd64 libsub-identify-perl amd64 0.14-3 [10.9 kB]
Get: 172 http://deb.debian.org/debian bookworm/main amd64 libsub-name-perl amd64 0.26-2+b1 [12.6 kB]
Get: 173 http://deb.debian.org/debian bookworm/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get: 174 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.88.1-9 [381 kB]
Get: 175 http://deb.debian.org/debian bookworm/main amd64 libwww-curl-perl amd64 4.17-10 [58.3 kB]
Get: 176 http://deb.debian.org/debian bookworm/main amd64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get: 177 http://deb.debian.org/debian bookworm/main amd64 dh-r all 20230121 [37.9 kB]
Get: 178 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-20 [9510 kB]
Get: 179 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B]
Get: 180 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 181 http://deb.debian.org/debian bookworm/main amd64 r-cran-littler amd64 0.3.17-1 [96.3 kB]
Get: 182 http://deb.debian.org/debian bookworm/main amd64 littler all 0.3.17-1 [14.4 kB]
Get: 183 http://deb.debian.org/debian bookworm/main amd64 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB]
Get: 184 http://deb.debian.org/debian bookworm/main amd64 r-bioc-biocgenerics all 0.44.0-2 [600 kB]
Get: 185 http://deb.debian.org/debian bookworm/main amd64 r-bioc-biobase amd64 2.58.0-2 [2112 kB]
Get: 186 http://deb.debian.org/debian bookworm/main amd64 r-bioc-s4vectors amd64 0.36.1-1 [2026 kB]
Get: 187 http://deb.debian.org/debian bookworm/main amd64 r-bioc-iranges amd64 2.32.0-1 [2222 kB]
Get: 188 http://deb.debian.org/debian bookworm/main amd64 r-cran-dbi all 1.1.3-1 [687 kB]
Get: 189 http://deb.debian.org/debian bookworm/main amd64 r-cran-bit amd64 4.0.5-1 [1070 kB]
Get: 190 http://deb.debian.org/debian bookworm/main amd64 r-cran-bit64 amd64 4.0.5-1 [463 kB]
Get: 191 http://deb.debian.org/debian bookworm/main amd64 r-cran-rlang amd64 1.0.6-1 [1618 kB]
Get: 192 http://deb.debian.org/debian bookworm/main amd64 r-cran-cli amd64 3.6.0-1 [1287 kB]
Get: 193 http://deb.debian.org/debian bookworm/main amd64 r-cran-glue amd64 1.6.2-1 [152 kB]
Get: 194 http://deb.debian.org/debian bookworm/main amd64 r-cran-lifecycle all 1.0.3+dfsg-1 [109 kB]
Get: 195 http://deb.debian.org/debian bookworm/main amd64 r-cran-vctrs amd64 0.5.2-1 [1371 kB]
Get: 196 http://deb.debian.org/debian bookworm/main amd64 r-cran-blob all 1.2.3-1 [49.5 kB]
Get: 197 http://deb.debian.org/debian bookworm/main amd64 r-cran-fastmap amd64 1.1.1-1 [68.9 kB]
Get: 198 http://deb.debian.org/debian bookworm/main amd64 r-cran-cachem amd64 1.0.7-1 [71.6 kB]
Get: 199 http://deb.debian.org/debian bookworm/main amd64 r-cran-memoise all 2.0.1-1 [53.8 kB]
Get: 200 http://deb.debian.org/debian bookworm/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get: 201 http://deb.debian.org/debian bookworm/main amd64 r-cran-pkgkitten all 0.2.2-2 [27.0 kB]
Get: 202 http://deb.debian.org/debian bookworm/main amd64 r-cran-rcpp amd64 1.0.10-1 [2059 kB]
Get: 203 http://deb.debian.org/debian bookworm/main amd64 r-cran-plogr all 0.2.0-3 [14.9 kB]
Get: 204 http://deb.debian.org/debian bookworm/main amd64 r-cran-rsqlite amd64 2.2.20-1 [1123 kB]
Get: 205 http://deb.debian.org/debian bookworm/main amd64 r-cran-curl amd64 5.0.0+dfsg-1 [172 kB]
Get: 206 http://deb.debian.org/debian bookworm/main amd64 r-cran-jsonlite amd64 1.8.4+dfsg-1 [442 kB]
Get: 207 http://deb.debian.org/debian bookworm/main amd64 r-cran-mime amd64 0.12-1+b1 [36.0 kB]
Get: 208 http://deb.debian.org/debian bookworm/main amd64 r-cran-sys amd64 3.4.1-1 [42.7 kB]
Get: 209 http://deb.debian.org/debian bookworm/main amd64 r-cran-askpass amd64 1.1-2 [22.2 kB]
Get: 210 http://deb.debian.org/debian bookworm/main amd64 r-cran-openssl amd64 2.0.5+dfsg-1 [391 kB]
Get: 211 http://deb.debian.org/debian bookworm/main amd64 r-cran-r6 all 2.5.1-1 [105 kB]
Get: 212 http://deb.debian.org/debian bookworm/main amd64 r-cran-httr all 1.4.5+dfsg-1 [465 kB]
Get: 213 http://deb.debian.org/debian bookworm/main amd64 r-cran-png amd64 0.1-8-1 [41.1 kB]
Get: 214 http://deb.debian.org/debian bookworm/main amd64 r-bioc-zlibbioc all 1.44.0+dfsg-1 [9200 B]
Get: 215 http://deb.debian.org/debian bookworm/main amd64 r-bioc-xvector amd64 0.38.0-1 [618 kB]
Get: 216 http://deb.debian.org/debian bookworm/main amd64 r-cran-bitops amd64 1.0-7-1 [30.2 kB]
Get: 217 http://deb.debian.org/debian bookworm/main amd64 r-cran-rcurl amd64 1.98-1.10+dfsg-1 [783 kB]
Get: 218 http://deb.debian.org/debian bookworm/main amd64 r-bioc-genomeinfodbdata all 1.2.9-1 [11.7 MB]
Get: 219 http://deb.debian.org/debian bookworm/main amd64 r-bioc-genomeinfodb all 1.34.9-1 [3938 kB]
Get: 220 http://deb.debian.org/debian bookworm/main amd64 r-cran-crayon all 1.5.2-1 [165 kB]
Get: 221 http://deb.debian.org/debian bookworm/main amd64 r-bioc-biostrings amd64 2.66.0-1 [13.8 MB]
Get: 222 http://deb.debian.org/debian bookworm/main amd64 r-bioc-keggrest all 1.38.0+dfsg-1 [179 kB]
Get: 223 http://deb.debian.org/debian bookworm/main amd64 r-bioc-annotationdbi all 1.60.0-1 [4696 kB]
Get: 224 http://deb.debian.org/debian bookworm/main amd64 r-cran-xml amd64 3.99-0.13-1 [1717 kB]
Get: 225 http://deb.debian.org/debian bookworm/main amd64 r-cran-xtable all 1:1.8-4-2 [689 kB]
Get: 226 http://deb.debian.org/debian bookworm/main amd64 r-bioc-annotate all 1.76.0+dfsg-1 [1727 kB]
Get: 227 http://deb.debian.org/debian bookworm/main amd64 r-cran-assertthat all 0.2.1-2 [56.5 kB]
Get: 228 http://deb.debian.org/debian bookworm/main amd64 r-cran-generics all 0.1.3-1 [81.4 kB]
Get: 229 http://deb.debian.org/debian bookworm/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB]
Get: 230 http://deb.debian.org/debian bookworm/main amd64 r-cran-fansi amd64 1.0.4-1 [619 kB]
Get: 231 http://deb.debian.org/debian bookworm/main amd64 r-cran-utf8 amd64 1.2.3-1 [133 kB]
Get: 232 http://deb.debian.org/debian bookworm/main amd64 r-cran-pillar all 1.8.1+dfsg-1 [463 kB]
Get: 233 http://deb.debian.org/debian bookworm/main amd64 r-cran-tibble amd64 3.1.8+dfsg-1 [513 kB]
Get: 234 http://deb.debian.org/debian bookworm/main amd64 r-cran-withr all 2.5.0-1 [236 kB]
Get: 235 http://deb.debian.org/debian bookworm/main amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [219 kB]
Get: 236 http://deb.debian.org/debian bookworm/main amd64 r-cran-dplyr amd64 1.0.10-1 [1227 kB]
Get: 237 http://deb.debian.org/debian bookworm/main amd64 r-cran-purrr amd64 1.0.1-1 [507 kB]
Get: 238 http://deb.debian.org/debian bookworm/main amd64 r-cran-dbplyr all 2.3.0+dfsg-1 [1055 kB]
Get: 239 http://deb.debian.org/debian bookworm/main amd64 r-cran-rappdirs amd64 0.3.3-1 [47.4 kB]
Get: 240 http://deb.debian.org/debian bookworm/main amd64 r-cran-filelock amd64 1.0.2-2 [24.6 kB]
Get: 241 http://deb.debian.org/debian bookworm/main amd64 r-bioc-biocfilecache all 2.6.1+dfsg-1 [296 kB]
Get: 242 http://deb.debian.org/debian bookworm/main amd64 r-cran-formatr all 1.14-1 [152 kB]
Get: 243 http://deb.debian.org/debian bookworm/main amd64 r-cran-lambda.r all 1.2.4-2 [118 kB]
Get: 244 http://deb.debian.org/debian bookworm/main amd64 r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get: 245 http://deb.debian.org/debian bookworm/main amd64 r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get: 246 http://deb.debian.org/debian bookworm/main amd64 r-cran-snow all 1:0.4.4-2 [98.9 kB]
Get: 247 http://deb.debian.org/debian bookworm/main amd64 r-cran-codetools all 0.2-19-1 [90.9 kB]
Get: 248 http://deb.debian.org/debian bookworm/main amd64 r-cran-bh all 1.74.0-2 [5524 B]
Get: 249 http://deb.debian.org/debian bookworm/main amd64 r-cran-cpp11 all 0.4.3-1 [223 kB]
Get: 250 http://deb.debian.org/debian bookworm/main amd64 r-bioc-biocparallel amd64 1.32.5-1 [1337 kB]
Get: 251 http://deb.debian.org/debian bookworm/main amd64 r-cran-ellipsis amd64 0.3.2-2 [35.1 kB]
Get: 252 http://deb.debian.org/debian bookworm/main amd64 r-cran-hms all 1.1.2-1 [104 kB]
Get: 253 http://deb.debian.org/debian bookworm/main amd64 r-cran-prettyunits all 1.1.1-2 [39.1 kB]
Get: 254 http://deb.debian.org/debian bookworm/main amd64 r-cran-progress all 1.2.2-2 [88.9 kB]
Get: 255 http://deb.debian.org/debian bookworm/main amd64 r-cran-stringi amd64 1.7.12-1 [858 kB]
Get: 256 http://deb.debian.org/debian bookworm/main amd64 r-cran-stringr all 1.5.0-1 [295 kB]
Get: 257 http://deb.debian.org/debian bookworm/main amd64 r-cran-digest amd64 0.6.31-1 [184 kB]
Get: 258 http://deb.debian.org/debian bookworm/main amd64 r-cran-xml2 amd64 1.3.3-1+b1 [280 kB]
Get: 259 http://deb.debian.org/debian bookworm/main amd64 r-bioc-biomart all 2.54.0+dfsg-1 [442 kB]
Get: 260 http://deb.debian.org/debian bookworm/main amd64 r-cran-lattice amd64 0.20-45-3 [1177 kB]
Get: 261 http://deb.debian.org/debian bookworm/main amd64 r-cran-matrix amd64 1.5-3-1 [3822 kB]
Get: 262 http://deb.debian.org/debian bookworm/main amd64 r-cran-matrixstats amd64 0.63.0-1 [470 kB]
Get: 263 http://deb.debian.org/debian bookworm/main amd64 r-bioc-matrixgenerics all 1.10.0-1 [302 kB]
Get: 264 http://deb.debian.org/debian bookworm/main amd64 r-bioc-delayedarray amd64 0.24.0+dfsg-1 [1937 kB]
Get: 265 http://deb.debian.org/debian bookworm/main amd64 r-bioc-genomicranges amd64 1.50.2+dfsg-1 [1796 kB]
Get: 266 http://deb.debian.org/debian bookworm/main amd64 r-bioc-summarizedexperiment all 1.28.0+dfsg-1 [2018 kB]
Get: 267 http://deb.debian.org/debian bookworm/main amd64 r-cran-locfit amd64 1.5-9.7-1 [507 kB]
Get: 268 http://deb.debian.org/debian bookworm/main amd64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB]
Get: 269 http://deb.debian.org/debian bookworm/main amd64 r-bioc-geneplotter all 1.76.0-1 [1488 kB]
Get: 270 http://deb.debian.org/debian bookworm/main amd64 r-cran-gtable all 0.3.1+dfsg-1 [165 kB]
Get: 271 http://deb.debian.org/debian bookworm/main amd64 r-cran-isoband amd64 0.2.7-1 [1614 kB]
Get: 272 http://deb.debian.org/debian bookworm/main amd64 r-cran-mass amd64 7.3-58.2-1 [1121 kB]
Get: 273 http://deb.debian.org/debian bookworm/main amd64 r-cran-nlme amd64 3.1.162-1 [2260 kB]
Get: 274 http://deb.debian.org/debian bookworm/main amd64 r-cran-mgcv amd64 1.8-41-1 [3171 kB]
Get: 275 http://deb.debian.org/debian bookworm/main amd64 r-cran-farver amd64 2.1.1-1 [1404 kB]
Get: 276 http://deb.debian.org/debian bookworm/main amd64 r-cran-labeling all 0.4.2-1 [62.7 kB]
Get: 277 http://deb.debian.org/debian bookworm/main amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1692 kB]
Get: 278 http://deb.debian.org/debian bookworm/main amd64 r-cran-munsell all 0.5.0-2 [236 kB]
Get: 279 http://deb.debian.org/debian bookworm/main amd64 r-cran-viridislite all 0.4.1-1 [1299 kB]
Get: 280 http://deb.debian.org/debian bookworm/main amd64 r-cran-scales all 1.2.1-1 [614 kB]
Get: 281 http://deb.debian.org/debian bookworm/main amd64 r-cran-ggplot2 all 3.4.1+dfsg-1 [3333 kB]
Get: 282 http://deb.debian.org/debian bookworm/main amd64 r-cran-rcpparmadillo amd64 0.12.0.1.0-1 [841 kB]
Get: 283 http://deb.debian.org/debian bookworm/main amd64 r-bioc-deseq2 amd64 1.38.3+dfsg-1 [1288 kB]
Get: 284 http://deb.debian.org/debian bookworm/main amd64 r-cran-survival amd64 3.5-3-1 [5910 kB]
Get: 285 http://deb.debian.org/debian bookworm/main amd64 r-bioc-genefilter amd64 1.80.3-1 [1042 kB]
Get: 286 http://deb.debian.org/debian bookworm/main amd64 r-bioc-rhtslib amd64 2.0.0+dfsg-1 [1287 kB]
Get: 287 http://deb.debian.org/debian bookworm/main amd64 r-bioc-rsamtools amd64 2.14.0-1 [3755 kB]
Get: 288 http://deb.debian.org/debian bookworm/main amd64 r-cran-hwriter all 1.3.2.1-1 [110 kB]
Get: 289 http://deb.debian.org/debian bookworm/main amd64 r-cran-statmod amd64 1.5.0-1 [295 kB]
Fetched 223 MB in 3s (78.6 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package readline-common.
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(Reading database ... 19596 files and directories currently installed.)
Preparing to unpack .../000-readline-common_8.2-1.3_all.deb ...
Unpacking readline-common (8.2-1.3) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../001-sensible-utils_0.0.17+nmu1_all.deb ...
Unpacking sensible-utils (0.0.17+nmu1) ...
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Preparing to unpack .../002-openssl_3.0.8-1_amd64.deb ...
Unpacking openssl (3.0.8-1) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../003-ca-certificates_20230311_all.deb ...
Unpacking ca-certificates (20230311) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../004-libmagic-mgc_1%3a5.44-3_amd64.deb ...
Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:amd64.
Preparing to unpack .../005-libmagic1_1%3a5.44-3_amd64.deb ...
Unpacking libmagic1:amd64 (1:5.44-3) ...
Selecting previously unselected package file.
Preparing to unpack .../006-file_1%3a5.44-3_amd64.deb ...
Unpacking file (1:5.44-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../007-gettext-base_0.21-12_amd64.deb ...
Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../008-libuchardet0_0.0.7-1_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../009-groff-base_1.22.4-10_amd64.deb ...
Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../010-bsdextrautils_2.38.1-5+b1_amd64.deb ...
Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../011-libpipeline1_1.5.7-1_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.7-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../012-man-db_2.11.2-2_amd64.deb ...
Unpacking man-db (2.11.2-2) ...
Selecting previously unselected package ucf.
Preparing to unpack .../013-ucf_3.0043+nmu1_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0043+nmu1) ...
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Preparing to unpack .../014-m4_1.4.19-3_amd64.deb ...
Unpacking m4 (1.4.19-3) ...
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Setting up r-bioc-zlibbioc (1.44.0+dfsg-1) ...
Setting up r-cran-askpass (1.1-2) ...
Setting up r-cran-fastmap (1.1.1-1) ...
Setting up r-cran-png (0.1-8-1) ...
Setting up r-bioc-biobase (2.58.0-2) ...
Setting up r-cran-jsonlite (1.8.4+dfsg-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-utf8 (1.2.3-1) ...
Setting up r-cran-colorspace (2.1-0+dfsg-1) ...
Setting up r-cran-stringi (1.7.12-1) ...
Setting up r-cran-hwriter (1.3.2.1-1) ...
Setting up r-cran-cpp11 (0.4.3-1) ...
Setting up r-cran-rcolorbrewer (1.1-3-1) ...
Setting up r-bioc-s4vectors (0.36.1-1) ...
Setting up r-cran-isoband (0.2.7-1) ...
Setting up r-cran-futile.logger (1.4.3-4) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up r-cran-matrix (1.5-3-1) ...
Setting up r-cran-mgcv (1.8-41-1) ...
Setting up r-cran-cachem (1.0.7-1) ...
Setting up r-cran-rcpparmadillo (0.12.0.1.0-1) ...
Setting up r-bioc-iranges (2.32.0-1) ...
Setting up r-cran-rcurl (1.98-1.10+dfsg-1) ...
Setting up r-cran-vctrs (0.5.2-1) ...
Setting up r-bioc-delayedarray (0.24.0+dfsg-1) ...
Setting up r-cran-pillar (1.8.1+dfsg-1) ...
Setting up r-cran-ellipsis (0.3.2-2) ...
Setting up r-cran-openssl (2.0.5+dfsg-1) ...
Setting up r-cran-stringr (1.5.0-1) ...
Setting up r-bioc-biocparallel (1.32.5-1) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Setting up r-bioc-rhtslib (2.0.0+dfsg-1) ...
Setting up r-cran-munsell (0.5.0-2) ...
Setting up r-cran-tibble (3.1.8+dfsg-1) ...
Setting up r-cran-survival (3.5-3-1) ...
Setting up r-cran-tidyselect (1.2.0+dfsg-1) ...
Setting up r-bioc-genomeinfodb (1.34.9-1) ...
Setting up r-cran-httr (1.4.5+dfsg-1) ...
Setting up r-cran-hms (1.1.2-1) ...
Setting up r-cran-scales (1.2.1-1) ...
Setting up r-cran-memoise (2.0.1-1) ...
Setting up r-cran-purrr (1.0.1-1) ...
Setting up r-cran-blob (1.2.3-1) ...
Setting up r-bioc-xvector (0.38.0-1) ...
Setting up r-cran-dplyr (1.0.10-1) ...
Setting up dh-r (20230121) ...
Setting up r-cran-dbplyr (2.3.0+dfsg-1) ...
Setting up r-cran-rsqlite (2.2.20-1) ...
Setting up r-cran-progress (1.2.2-2) ...
Setting up r-bioc-biocfilecache (2.6.1+dfsg-1) ...
Setting up r-cran-ggplot2 (3.4.1+dfsg-1) ...
Setting up r-bioc-genomicranges (1.50.2+dfsg-1) ...
Setting up r-bioc-biostrings (2.66.0-1) ...
Setting up r-bioc-rsamtools (2.14.0-1) ...
Setting up r-bioc-summarizedexperiment (1.28.0+dfsg-1) ...
Setting up r-bioc-keggrest (1.38.0+dfsg-1) ...
Setting up r-bioc-annotationdbi (1.60.0-1) ...
Setting up r-bioc-annotate (1.76.0+dfsg-1) ...
Setting up r-bioc-biomart (2.54.0+dfsg-1) ...
Setting up r-bioc-genefilter (1.80.3-1) ...
Setting up r-bioc-geneplotter (1.76.0-1) ...
Setting up r-bioc-deseq2 (1.38.3+dfsg-1) ...
Processing triggers for libc-bin (2.36-9) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/r-bioc-dexseq-1.44.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-dexseq_1.44.0+dfsg-1_source.changes
dpkg-buildpackage: info: source package r-bioc-dexseq
dpkg-buildpackage: info: source version 1.44.0+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary
dh binary --buildsystem R
dh_update_autotools_config -O--buildsystem=R
dh_autoreconf -O--buildsystem=R
dh_auto_configure -O--buildsystem=R
dh_auto_build -O--buildsystem=R
dh_auto_test -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=R
dh_prep -O--buildsystem=R
dh_auto_install --destdir=debian/r-bioc-dexseq/ -O--buildsystem=R
I: R Package: DEXSeq Version: 1.44.0
I: Building using R version 4.2.2.20221110-2
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Tue, 22 Nov 2022 07:24:24 +0100
mkdir -p /build/r-bioc-dexseq-1.44.0\+dfsg/debian/r-bioc-dexseq/usr/lib/R/site-library
R CMD INSTALL -l /build/r-bioc-dexseq-1.44.0\+dfsg/debian/r-bioc-dexseq/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 22 Nov 2022 07:24:24 +0100'"
* installing *source* package 'DEXSeq' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DEXSeq)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 302.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 303.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 306.
I: Using r-bioc-biocparallel for Depends:BiocParallel
I: Using r-bioc-biobase for Depends:Biobase
I: Using r-bioc-summarizedexperiment for Depends:SummarizedExperiment
I: Using r-bioc-iranges for Depends:IRanges (>= 2.5.17)
I: Using r-bioc-genomicranges for Depends:GenomicRanges (>= 1.23.7)
I: Using r-bioc-deseq2 for Depends:DESeq2 (>= 1.9.11)
I: Using r-bioc-annotationdbi for Depends:AnnotationDbi
I: Using r-cran-rcolorbrewer for Depends:RColorBrewer
I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.23.18)
I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures (>= 1.13.29)
W: Cannot find a debian package for Suggests:pasilla (>= 0.2.22)
W: Cannot find a debian package for Suggests:parathyroidSE
I: Using r-bioc-biocstyle for Suggests:BiocStyle
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
I: Using r-cran-testthat for Suggests:testthat
I: Using r-bioc-biocgenerics for Imports:BiocGenerics
I: Using r-bioc-biomart for Imports:biomaRt
I: Using r-cran-hwriter for Imports:hwriter
I: Using r-cran-stringr for Imports:stringr
I: Using r-bioc-rsamtools for Imports:Rsamtools
I: Using r-cran-statmod for Imports:statmod
I: Using r-bioc-geneplotter for Imports:geneplotter
I: Using r-bioc-genefilter for Imports:genefilter
I: BioConductor API version: r-api-bioc-3.16
I: Use r-bioc-dexseq as Debian binary package for variables substitution
dh_installdocs -O--buildsystem=R
dh_installchangelogs -O--buildsystem=R
dh_installsystemduser -O--buildsystem=R
dh_perl -O--buildsystem=R
dh_link -O--buildsystem=R
dh_strip_nondeterminism -O--buildsystem=R
dh_compress -O--buildsystem=R
dh_fixperms -O--buildsystem=R
dh_missing -O--buildsystem=R
dh_installdeb -O--buildsystem=R
dh_gencontrol -O--buildsystem=R
dh_md5sums -O--buildsystem=R
dh_builddeb -O--buildsystem=R
dpkg-deb: building package 'r-bioc-dexseq' in '../r-bioc-dexseq_1.44.0+dfsg-1_all.deb'.
dpkg-genbuildinfo --build=binary -O../r-bioc-dexseq_1.44.0+dfsg-1_amd64.buildinfo
dpkg-genchanges --build=binary -O../r-bioc-dexseq_1.44.0+dfsg-1_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/2911926 and its subdirectories
I: Current time: Fri Jun 21 23:44:10 -12 2024
I: pbuilder-time-stamp: 1719056650
Sun May 21 05:21:09 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net.
Sun May 21 05:21:09 UTC 2023 I: Preparing to do remote build '2' on ionos11-amd64.debian.net.
Sun May 21 05:23:59 UTC 2023 I: Deleting $TMPDIR on ionos11-amd64.debian.net.
Sun May 21 05:23:59 UTC 2023 I: r-bioc-dexseq_1.44.0+dfsg-1_amd64.changes:
Format: 1.8
Date: Tue, 22 Nov 2022 07:24:24 +0100
Source: r-bioc-dexseq
Binary: r-bioc-dexseq
Architecture: all
Version: 1.44.0+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-dexseq - GNU R inference of differential exon usage in RNA-Seq
Changes:
r-bioc-dexseq (1.44.0+dfsg-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* Reduce piuparts noise in transitions (routine-update)
Checksums-Sha1:
ad6badb670f32ee270709a21efad288ecab9f05d 456428 r-bioc-dexseq_1.44.0+dfsg-1_all.deb
28fcaf121c562bd00811b917f48397e1fc2ea779 13051 r-bioc-dexseq_1.44.0+dfsg-1_amd64.buildinfo
Checksums-Sha256:
9dd879d79da08071b72e499bf7245792fc89a0f5c186cac6ebf0fdc8636fc138 456428 r-bioc-dexseq_1.44.0+dfsg-1_all.deb
b1d06c034b56409595c9000212ec45e29ab48803ca08e5cf1488232baabcbc30 13051 r-bioc-dexseq_1.44.0+dfsg-1_amd64.buildinfo
Files:
d17c57a3ffa6b4c4a3f35c0cd30c37f2 456428 gnu-r optional r-bioc-dexseq_1.44.0+dfsg-1_all.deb
d1670e6bc824366e36257aede8767dbb 13051 gnu-r optional r-bioc-dexseq_1.44.0+dfsg-1_amd64.buildinfo
Sun May 21 05:24:00 UTC 2023 I: diffoscope 242 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.8dOQ9qlh/r-bioc-dexseq_1.44.0+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.8dOQ9qlh/r-bioc-dexseq_1.44.0+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.8dOQ9qlh/r-bioc-dexseq_1.44.0+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.8dOQ9qlh/b1/r-bioc-dexseq_1.44.0+dfsg-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.8dOQ9qlh/b2/r-bioc-dexseq_1.44.0+dfsg-1_amd64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.366s)
0.366s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.023s)
0.023s 12 calls diffoscope.comparators.binary.FilesystemFile
0.000s 10 calls abc.DotChangesFile
## specialize (total time: 0.000s)
0.000s 1 call specialize
Sun May 21 05:24:01 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists.
Sun May 21 05:24:01 UTC 2023 I: r-bioc-dexseq from bookworm built successfully and reproducibly on amd64.
Sun May 21 05:24:02 UTC 2023 I: Submitting .buildinfo files to external archives:
Sun May 21 05:24:02 UTC 2023 I: Submitting 16K b1/r-bioc-dexseq_1.44.0+dfsg-1_amd64.buildinfo.asc
Sun May 21 05:24:03 UTC 2023 I: Submitting 16K b2/r-bioc-dexseq_1.44.0+dfsg-1_amd64.buildinfo.asc
Sun May 21 05:24:04 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Sun May 21 05:24:04 UTC 2023 I: Done submitting .buildinfo files.
Sun May 21 05:24:04 UTC 2023 I: Removing signed r-bioc-dexseq_1.44.0+dfsg-1_amd64.buildinfo.asc files:
removed './b1/r-bioc-dexseq_1.44.0+dfsg-1_amd64.buildinfo.asc'
removed './b2/r-bioc-dexseq_1.44.0+dfsg-1_amd64.buildinfo.asc'