Mon May 15 15:33:24 UTC 2023 I: starting to build qcat/bookworm/amd64 on jenkins on '2023-05-15 15:33' Mon May 15 15:33:24 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_24/25535/console.log Mon May 15 15:33:24 UTC 2023 I: Downloading source for bookworm/qcat=1.1.0-6 --2023-05-15 15:33:25-- http://cdn-fastly.deb.debian.org/debian/pool/main/q/qcat/qcat_1.1.0-6.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2220 (2.2K) [text/prs.lines.tag] Saving to: ‘qcat_1.1.0-6.dsc’ 0K .. 100% 141M=0s 2023-05-15 15:33:25 (141 MB/s) - ‘qcat_1.1.0-6.dsc’ saved [2220/2220] Mon May 15 15:33:25 UTC 2023 I: qcat_1.1.0-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: qcat Binary: qcat, qcat-examples Architecture: all Version: 1.1.0-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/nanoporetech/qcat Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/qcat Vcs-Git: https://salsa.debian.org/med-team/qcat.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-six , python3-pytest-runner , python3-pytest , python3-pytest-cov , python3-biopython , python3-parasail , python3-yaml Package-List: qcat deb science optional arch=all qcat-examples deb science optional arch=all Checksums-Sha1: bb7a6e01fcb2e8d74564de5b4193ee8c1f161951 8390399 qcat_1.1.0.orig.tar.gz ad0de737c1e36b3efc40a5e1bafc4c7a0d65f34e 5116 qcat_1.1.0-6.debian.tar.xz Checksums-Sha256: a753028525125d5690b6b514938eb199ccd11ad1c60c4bf76284304968c3918b 8390399 qcat_1.1.0.orig.tar.gz be4ca86a43112b0eed2ccf698298cc77046bdfdbdaae2abbd35432cbe88c6fbc 5116 qcat_1.1.0-6.debian.tar.xz Files: 9b348653968dbfd4579f05edd330aa83 8390399 qcat_1.1.0.orig.tar.gz 5faa64105939a9e1ed20eb70bb6f4372 5116 qcat_1.1.0-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOGZHERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGn5Q/9E85W2DhL6EMn8hG1HIJHK/qb+pHIQMRt hH33nx0gXUZuPSpn1/hbJUlNGYGWea86cl+798bYxXls4snbEOdkyUV8g2fDmulb AMYqXgQ3EY4nCyUEYzFO2+Ym7MatgWmTyeAxizXU6eYBaNvSf+Zk7bcuV4Yk6Xnu PqvX1YLCES4QygfZ21HBFwaTdI7bqS7+T1PEgFPb7w8KIPH+njZKrd8GPPWga3ig 6Y1WSis49IKRGoLsWYBLqBmFRlSmuAYSrUxZWyIMlwUcKR9DgbBiD9s3A/TmT6yk dWdYLIhn+yzYmX7VzahVDHZT703DMZ20CBBKE90fqCnjLGCEuAE9GKn1tUmbJbuC dASfpC73fbzUwulKleZrLEe6e5uVNODHjN/3ylDf0clJsVlv9+RkNHq55UKOhPzn wEnYqVdkHF2c9Onhs0F62gTYReXpqXA+jFYxELOikOza11mygHY0u7KlVUlyzNwA SS2QL8jAFkIiP9Lvua1+GrVncPyR6oIqJRR9d9XZdRuU8yqcUXTvQmo3YfmPG8SE Bw/Tp6OclEm5e9enyvky4rutaimfBAUAAs0gLivfWzeVJJUDIZJ9WwqibUDSwZ2w VrdxPvMX7Vlo49eV+zYjpM9FWZpARjZnkT1zNqcex6JX85FdJyylbZhl/F6Davg0 f+m9+Oyp6Ss= =tjc2 -----END PGP SIGNATURE----- Mon May 15 15:33:25 UTC 2023 I: Checking whether the package is not for us Mon May 15 15:33:25 UTC 2023 I: Starting 1st build on remote node ionos15-amd64.debian.net. Mon May 15 15:33:25 UTC 2023 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Mon May 15 15:36:36 UTC 2023 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jun 16 09:56:28 -12 2024 I: pbuilder-time-stamp: 1718574988 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [qcat_1.1.0-6.dsc] I: copying [./qcat_1.1.0.orig.tar.gz] I: copying [./qcat_1.1.0-6.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Nov 29 07:58:41 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./qcat_1.1.0-6.dsc: no acceptable signature found dpkg-source: info: extracting qcat in qcat-1.1.0 dpkg-source: info: unpacking qcat_1.1.0.orig.tar.gz dpkg-source: info: unpacking qcat_1.1.0-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying yaml_safe_load.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3053693/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f67ccb52bec348fb87bae0746b32087f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3053693' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.EIT8nUBs/pbuilderrc_6riZ --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.EIT8nUBs/b1 --logfile b1/build.log qcat_1.1.0-6.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 2023 more -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/3053693/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-six, python3-pytest-runner, python3-pytest, python3-pytest-cov, python3-biopython, python3-parasail, python3-yaml dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-six; however: Package python3-six is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-runner; however: Package python3-pytest-runner is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however: Package python3-pytest-cov is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-parasail; however: Package python3-parasail is not installed. pbuilder-satisfydepends-dummy depends on python3-yaml; however: Package python3-yaml is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libopenjp2-7{a} libparasail-dev{a} libparasail8{a} libpipeline1{a} libpng16-16{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libraqm0{a} libreadline8{a} libsub-override-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libyaml-0-2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} po-debconf{a} python3{a} python3-attr{a} python3-biopython{a} python3-coverage{a} python3-distutils{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-parasail{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pytest{a} python3-pytest-cov{a} python3-pytest-runner{a} python3-renderpm{a} python3-reportlab{a} python3-reportlab-accel{a} python3-setuptools{a} python3-six{a} python3-wheel{a} python3-yaml{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile python3-pygments shared-mime-info wget xdg-user-dirs 0 packages upgraded, 111 newly installed, 0 to remove and 0 not upgraded. Need to get 60.1 MB of archives. After unpacking 226 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 mailcap all 3.70+nmu1 [32.0 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 mime-support all 3.66 [10.9 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 15 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 sgml-base all 1.31 [15.4 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130 [104 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 libfontenc1 amd64 1:1.1.4-1 [24.3 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5 [399 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 fonts-urw-base35 all 20200910-7 [10.8 MB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B] Get: 70 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-metadata all 12-4 [6532 B] Get: 71 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-3 [184 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.2 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-1+b1 [189 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libparasail8 amd64 2.6+dfsg-1 [1878 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 libparasail-dev amd64 2.6+dfsg-1 [1495 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4.1 [10.6 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.1 [285 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-5 [316 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.4-0.1 [99.2 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.4-0.1 [109 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get: 88 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get: 89 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 90 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get: 91 http://deb.debian.org/debian bookworm/main amd64 python3-renderpm amd64 3.6.12-1+b1 [79.2 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab-accel amd64 3.6.12-1+b1 [38.6 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.4.0-1.1+b1 [472 kB] Get: 94 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab all 3.6.12-1 [564 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get: 96 http://deb.debian.org/debian bookworm/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 97 http://deb.debian.org/debian bookworm/main amd64 python3-biopython amd64 1.80+dfsg-4+b1 [1593 kB] Get: 98 http://deb.debian.org/debian bookworm/main amd64 python3-coverage amd64 6.5.0+dfsg1-2+b1 [153 kB] Get: 99 http://deb.debian.org/debian bookworm/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 100 http://deb.debian.org/debian bookworm/main amd64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 python3-wheel all 0.38.4-2 [30.8 kB] Get: 103 http://deb.debian.org/debian bookworm/main amd64 python3-parasail all 1.3.3-1 [38.6 kB] Get: 104 http://deb.debian.org/debian bookworm/main amd64 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 105 http://deb.debian.org/debian bookworm/main amd64 python3-py all 1.11.0-1 [89.2 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 python3-pytest all 7.2.1-2 [236 kB] Get: 107 http://deb.debian.org/debian bookworm/main amd64 python3-pytest-cov all 4.0.0-1 [26.1 kB] Get: 108 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Get: 109 http://deb.debian.org/debian bookworm/main amd64 python3-pytest-runner all 2.11.1-4 [8432 B] Get: 110 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get: 111 http://deb.debian.org/debian bookworm/main amd64 python3-yaml amd64 6.0-3+b2 [119 kB] Fetched 60.1 MB in 1s (65.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libjs-jquery. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-jquery-hotkeys. Preparing to unpack .../libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2.1_all.deb ... Unpacking libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19938 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.70+nmu1_all.deb ... Unpacking mailcap (3.70+nmu1) ... Selecting previously unselected package mime-support. Preparing to unpack .../3-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../5-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.2-6_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.2-6_amd64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20396 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../01-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../04-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.38.1-5+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.11.2-2_amd64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../21-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../24-libelf1_0.188-2.1_amd64.deb ... Unpacking libelf1:amd64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.15-1_amd64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../26-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../27-libxml2_2.9.14+dfsg-1.2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.21-12_amd64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../32-python3-lib2to3_3.11.2-3_all.deb ... Unpacking python3-lib2to3 (3.11.2-3) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../33-python3-distutils_3.11.2-3_all.deb ... Unpacking python3-distutils (3.11.2-3) ... Selecting previously unselected package dh-python. Preparing to unpack .../34-dh-python_5.20230130_all.deb ... Unpacking dh-python (5.20230130) ... Selecting previously unselected package libfontenc1:amd64. Preparing to unpack .../35-libfontenc1_1%3a1.1.4-1_amd64.deb ... Unpacking libfontenc1:amd64 (1:1.1.4-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../36-libbrotli1_1.0.9-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b6) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../37-libpng16-16_1.6.39-2_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.39-2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../38-libfreetype6_2.12.1+dfsg-5_amd64.deb ... Unpacking libfreetype6:amd64 (2.12.1+dfsg-5) ... Selecting previously unselected package x11-common. Preparing to unpack .../39-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../40-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../41-xfonts-utils_1%3a7.7+6_amd64.deb ... Unpacking xfonts-utils (1:7.7+6) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../42-fonts-urw-base35_20200910-7_all.deb ... Unpacking fonts-urw-base35 (20200910-7) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../43-libblas3_3.11.0-2_amd64.deb ... Unpacking libblas3:amd64 (3.11.0-2) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../44-libbsd0_0.11.7-2_amd64.deb ... Unpacking libbsd0:amd64 (0.11.7-2) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../45-libdeflate0_1.14-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.14-1) ... 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Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up liblerc4:amd64 (4.0.0+ds-2) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libparasail8:amd64 (2.6+dfsg-1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libglib2.0-0:amd64 (2.74.6-2) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libmagic1:amd64 (1:5.44-3) ... Setting up libdeflate0:amd64 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libparasail-dev:amd64 (2.6+dfsg-1) ... Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... Setting up libjbig0:amd64 (2.1-6.1) ... 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Setting up libreadline8:amd64 (8.2-1.3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-5) ... Setting up libjs-jquery-metadata (12-4) ... Setting up libjs-jquery-isonscreen (1.2.0-1.1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-3) ... Setting up groff-base (1.22.4-10) ... Setting up xml-core (0.18+nmu1) ... Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libraqm0:amd64 (0.7.0-4.1) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up python3-six (1.16.0-4) ... Setting up python3-pil:amd64 (9.4.0-1.1+b1) ... Setting up python3-packaging (23.0-1) ... Setting up python3-reportlab-accel:amd64 (3.6.12-1+b1) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-reportlab (3.6.12-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (22.2.0-1) ... Setting up python3-renderpm:amd64 (3.6.12-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-coverage (6.5.0+dfsg1-2+b1) ... Setting up python3-yaml (6.0-3+b2) ... Setting up python3-pytest-cov (4.0.0-1) ... Setting up python3-wheel (0.38.4-2) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-pytest-runner (2.11.1-4) ... Setting up python3-parasail (1.3.3-1) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.80+dfsg-4+b1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/qcat-1.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../qcat_1.1.0-6_source.changes dpkg-buildpackage: info: source package qcat dpkg-buildpackage: info: source version 1.1.0-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py clean running clean removing '/build/qcat-1.1.0/.pybuild/cpython3_3.11/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/adapters.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/utils.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/scanner_simple.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/scanner_guppy.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/scanner_epi2me.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/scanner_dual.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/scanner_brill.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/scanner_base.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/scanner.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/layout.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/eval_roc.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/eval_full.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/eval.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/config.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/cli.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/calibration.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat copying qcat/__init__.py -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat creating /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources creating /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/simple_standard.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/simple_extended.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/VMK001.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/RPB004_RLB001.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/RBK004.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/RBK001.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/RAB214_5p_c.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/RAB214_5p_a.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/RAB214_3p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/RAB204_RAB214_5p_c.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/RAB204_RAB214_5p_a.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/RAB204_RAB214_3p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/RAB201_5p_c.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/RAB201_5p_a.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/RAB201_3p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/PBK004_LWB001_5p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/PBK004_LWB001_3p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/PBC096_5p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/PBC096_3p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/PBC001_5p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/PBC001_3p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/NBD114_5p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/NBD114_3p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/NBD104_NBD114_5p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/NBD104_NBD114_3p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/NBD104_5p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/NBD104_3p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/DUAL_5p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits copying qcat/resources/kits/DUAL_3p.yml -> /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:307: cp -r /build/qcat-1.1.0/qcat/test /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat ; I: pybuild base:240: cd /build/qcat-1.1.0/.pybuild/cpython3_3.11/build; python3.11 -m pytest ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack -- /usr/bin/python3.11 cachedir: .pytest_cache rootdir: /build/qcat-1.1.0, configfile: pytest.ini plugins: cov-4.0.0 collecting ... collected 14 items qcat/test/test_barcode.py::test_get_placeholder PASSED [ 7%] qcat/test/test_barcode.py::test_barcode PASSED [ 14%] qcat/test/test_barcode.py::test_scanner_find_best_adapter_template PASSED [ 21%] qcat/test/test_barcode.py::test_barcode_rapidkit PASSED [ 28%] qcat/test/test_barcode.py::test_scanner_detect_barcode_generic PASSED [ 35%] qcat/test/test_barcode.py::test_utils PASSED [ 42%] qcat/test/test_barcode.py::test_scanner_ectract_align_sequence PASSED [ 50%] qcat/test/test_barcode.py::test_adapter_layout PASSED [ 57%] qcat/test/test_barcode.py::test_full_run_rad003 PASSED [ 64%] qcat/test/test_barcode.py::test_full_run_nbd103 PASSED [ 71%] qcat/test/test_barcode.py::test_full_run_pbk004 PASSED [ 78%] qcat/test/test_barcode.py::test_full_run_rab204 PASSED [ 85%] qcat/test/test_barcode.py::test_full_run_rbk004 PASSED [ 92%] qcat/test/test_barcode.py::test_trimming PASSED [100%] =============================== warnings summary =============================== ../../../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1294 /usr/lib/python3/dist-packages/_pytest/config/__init__.py:1294: PytestConfigWarning: Unknown config option: log_print self._warn_or_fail_if_strict(f"Unknown config option: {key}\n") -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ---------- coverage: platform linux, python 3.11.2-final-0 ----------- Name Stmts Miss Cover Missing --------------------------------------------------------- qcat/__init__.py 2 0 100% qcat/adapters.py 102 38 63% 19-24, 28-31, 35-40, 44, 55, 81-83, 104-105, 109-118, 130-132, 134-135, 146-149 qcat/calibration.py 0 0 100% qcat/cli.py 283 222 22% 21-32, 36-39, 43-48, 62-197, 218-231, 256-257, 276-278, 286-302, 306, 311-324, 330-357, 362-363, 367-373, 377-383, 387-404, 419-435, 470-563, 567-575, 587-634, 639 qcat/config.py 106 32 70% 29, 58-59, 78-79, 98-99, 118, 137, 156, 177, 200, 209-234, 263-275 qcat/eval.py 118 118 0% 1-183 qcat/eval_full.py 132 132 0% 1-241 qcat/eval_roc.py 50 50 0% 1-105 qcat/layout.py 108 25 77% 34, 38, 56, 65, 99, 114, 129, 141-143, 155-166, 188, 206, 213, 230, 238 qcat/scanner.py 45 21 53% 10-11, 40-45, 55-60, 70-75, 94-98, 111 qcat/scanner_base.py 284 111 61% 8-11, 24-26, 107, 123, 165-188, 212, 248-255, 279-285, 339, 344, 456, 464, 477, 481-519, 529, 590-591, 594-595, 607-611, 614-616, 620-630, 634-642, 646-654, 658-660, 664-678, 682-689, 693-704, 707-712, 717-733 qcat/scanner_brill.py 77 77 0% 1-138 qcat/scanner_dual.py 41 31 24% 15-29, 33, 56-146 qcat/scanner_epi2me.py 42 9 79% 17, 92, 107-125 qcat/scanner_guppy.py 56 32 43% 13, 46-77, 87-111, 118-120, 125-131 qcat/scanner_simple.py 28 17 39% 14-31, 35, 38-41, 68-87 qcat/test/__init__.py 0 0 100% qcat/test/test_barcode.py 273 5 98% 591-597 qcat/utils.py 22 0 100% --------------------------------------------------------- TOTAL 1769 920 48% ======================== 14 passed, 1 warning in 35.96s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/qcat-1.1.0/debian/tmp running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running install_lib creating /build/qcat-1.1.0/debian/tmp/usr creating /build/qcat-1.1.0/debian/tmp/usr/lib creating /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11 creating /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/.coverage -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages creating /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat creating /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/cli.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/scanner_dual.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/scanner_simple.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/scanner_epi2me.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/scanner_guppy.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/utils.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/config.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/calibration.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/scanner_base.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/layout.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/adapters.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/scanner.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__pycache__/__init__.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__pycache__ creating /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test creating /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/__pycache__ copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/__pycache__/test_barcode.cpython-311-pytest-7.2.1.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/__pycache__ copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/__pycache__/__init__.cpython-311.pyc -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/__pycache__ copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/test_barcode.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test creating /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/data copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/data/rbk004.fastq -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/data copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/data/rab204.fastq -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/data copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/data/pbk004.fastq -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/data copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/data/nobarcode_1k.fastq -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/data copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/data/nbd103.fastq -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/data copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/data/barcode_1k.fastq -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/data copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/test/__init__.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test creating /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources creating /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/DUAL_3p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/DUAL_5p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/NBD104_3p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/NBD104_5p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/NBD104_NBD114_3p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/NBD104_NBD114_5p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/NBD114_3p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/NBD114_5p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/PBC001_3p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/PBC001_5p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/PBC096_3p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/PBC096_5p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/PBK004_LWB001_3p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/PBK004_LWB001_5p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB201_3p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB201_5p_a.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB201_5p_c.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB204_RAB214_3p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB204_RAB214_5p_a.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB204_RAB214_5p_c.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB214_3p.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB214_5p_a.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RAB214_5p_c.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RBK001.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RBK004.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/RPB004_RLB001.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/VMK001.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/simple_extended.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/resources/kits/simple_standard.yml -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/resources/kits copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/__init__.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/calibration.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/cli.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/config.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/eval.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/eval_full.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/eval_roc.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/layout.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/scanner.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/scanner_base.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/scanner_brill.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/scanner_dual.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/scanner_epi2me.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/scanner_guppy.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/scanner_simple.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/utils.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat copying /build/qcat-1.1.0/.pybuild/cpython3_3.11/build/qcat/adapters.py -> /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/test_barcode.py to test_barcode.cpython-311.pyc byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/test/__init__.py to __init__.cpython-311.pyc byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/__init__.py to __init__.cpython-311.pyc byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/calibration.py to calibration.cpython-311.pyc byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/cli.py to cli.cpython-311.pyc byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/config.py to config.cpython-311.pyc byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/eval.py to eval.cpython-311.pyc byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/eval_full.py to eval_full.cpython-311.pyc byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/eval_roc.py to eval_roc.cpython-311.pyc byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/layout.py to layout.cpython-311.pyc byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/scanner.py to scanner.cpython-311.pyc byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/scanner_base.py to scanner_base.cpython-311.pyc byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/scanner_brill.py to scanner_brill.cpython-311.pyc byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/scanner_dual.py to scanner_dual.cpython-311.pyc byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/scanner_epi2me.py to scanner_epi2me.cpython-311.pyc byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/scanner_guppy.py to scanner_guppy.cpython-311.pyc byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/scanner_simple.py to scanner_simple.cpython-311.pyc byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/utils.py to utils.cpython-311.pyc byte-compiling /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat/adapters.py to adapters.cpython-311.pyc running install_egg_info running egg_info creating qcat.egg-info writing qcat.egg-info/PKG-INFO writing dependency_links to qcat.egg-info/dependency_links.txt writing entry points to qcat.egg-info/entry_points.txt writing requirements to qcat.egg-info/requires.txt writing top-level names to qcat.egg-info/top_level.txt writing manifest file 'qcat.egg-info/SOURCES.txt' reading manifest file 'qcat.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'qcat.egg-info/SOURCES.txt' Copying qcat.egg-info to /build/qcat-1.1.0/debian/tmp/usr/lib/python3.11/dist-packages/qcat-1.1.0.egg-info Skipping SOURCES.txt running install_scripts Installing qcat script to /build/qcat-1.1.0/debian/tmp/usr/bin Installing qcat-eval script to /build/qcat-1.1.0/debian/tmp/usr/bin Installing qcat-eval-truth script to /build/qcat-1.1.0/debian/tmp/usr/bin Installing qcat-roc script to /build/qcat-1.1.0/debian/tmp/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/qcat-1.1.0' dh_install find debian -name .coverage -delete mkdir -p debian/qcat-examples/usr/share/doc/qcat/examples/qcat mv debian/qcat/usr/lib/python3*/dist-packages/qcat/test debian/qcat-examples/usr/share/doc/qcat/examples/qcat find debian -name __pycache__ -type d | xargs rm -rf make[1]: Leaving directory '/build/qcat-1.1.0' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'qcat-examples' in '../qcat-examples_1.1.0-6_all.deb'. dpkg-deb: building package 'qcat' in '../qcat_1.1.0-6_all.deb'. dpkg-genbuildinfo --build=binary -O../qcat_1.1.0-6_amd64.buildinfo dpkg-genchanges --build=binary -O../qcat_1.1.0-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3053693 and its subdirectories I: Current time: Sun Jun 16 09:59:36 -12 2024 I: pbuilder-time-stamp: 1718575176 Mon May 15 15:36:36 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Mon May 15 15:36:36 UTC 2023 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Mon May 15 15:42:45 UTC 2023 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Mon May 15 15:42:45 UTC 2023 I: qcat_1.1.0-6_amd64.changes: Format: 1.8 Date: Tue, 29 Nov 2022 20:55:24 +0100 Source: qcat Binary: qcat qcat-examples Architecture: all Version: 1.1.0-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: qcat - demultiplexing Oxford Nanopore reads from FASTQ files qcat-examples - demultiplexing Oxford Nanopore reads from FASTQ files (examples) Changes: qcat (1.1.0-6) unstable; urgency=medium . * Fix watch file * Set upstream metadata fields: Repository-Browse. Checksums-Sha1: d38f9bee59d103b2a9780f1f6ed8f2822e9337ca 8242360 qcat-examples_1.1.0-6_all.deb 09e2279a9735cb0b71f90a1cf1789b2cfd55439c 31204 qcat_1.1.0-6_all.deb b9b478c6edce05f1084db847d9dc7b87d9be87b1 7635 qcat_1.1.0-6_amd64.buildinfo Checksums-Sha256: 92e4b489b9e3efe482d044d9eefefa09bcae53680e84ae02dbb1a77c87897592 8242360 qcat-examples_1.1.0-6_all.deb 4c02565d0897cc32de50f3b14b3f03cbdbfe4177ce11e9e778270c80596930fe 31204 qcat_1.1.0-6_all.deb 52569d9c47624cfcbf628fc1fec98b54df8a682ead7b969bbbdf6a3ff7f3bc3f 7635 qcat_1.1.0-6_amd64.buildinfo Files: c6c228ec9ee62c8d5f3cbfee32f7a7eb 8242360 science optional qcat-examples_1.1.0-6_all.deb 355b793e0f672b9a2a0d56d72346f60b 31204 science optional qcat_1.1.0-6_all.deb 96a090d4729a1df89abfd4ee1d03d50c 7635 science optional qcat_1.1.0-6_amd64.buildinfo Mon May 15 15:42:46 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.EIT8nUBs/qcat_1.1.0-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.EIT8nUBs/qcat_1.1.0-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.EIT8nUBs/qcat_1.1.0-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.EIT8nUBs/b1/qcat_1.1.0-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.EIT8nUBs/b2/qcat_1.1.0-6_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.397s) 0.397s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.101s) 0.101s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Mon May 15 15:42:47 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Mon May 15 15:42:47 UTC 2023 I: qcat from bookworm built successfully and reproducibly on amd64. Mon May 15 15:42:48 UTC 2023 I: Submitting .buildinfo files to external archives: Mon May 15 15:42:48 UTC 2023 I: Submitting 12K b1/qcat_1.1.0-6_amd64.buildinfo.asc Mon May 15 15:42:50 UTC 2023 I: Submitting 12K b2/qcat_1.1.0-6_amd64.buildinfo.asc Mon May 15 15:42:51 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon May 15 15:42:51 UTC 2023 I: Done submitting .buildinfo files. Mon May 15 15:42:51 UTC 2023 I: Removing signed qcat_1.1.0-6_amd64.buildinfo.asc files: removed './b1/qcat_1.1.0-6_amd64.buildinfo.asc' removed './b2/qcat_1.1.0-6_amd64.buildinfo.asc'