Mon Nov 6 12:15:44 UTC 2023 I: starting to build python-pdbfixer/bookworm/amd64 on jenkins on '2023-11-06 12:15' Mon Nov 6 12:15:44 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_14/2901/console.log Mon Nov 6 12:15:44 UTC 2023 I: Downloading source for bookworm/python-pdbfixer=1.8.1-2 --2023-11-06 12:15:44-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-pdbfixer/python-pdbfixer_1.8.1-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2190 (2.1K) [text/prs.lines.tag] Saving to: ‘python-pdbfixer_1.8.1-2.dsc’ 0K .. 100% 187M=0s 2023-11-06 12:15:44 (187 MB/s) - ‘python-pdbfixer_1.8.1-2.dsc’ saved [2190/2190] Mon Nov 6 12:15:44 UTC 2023 I: python-pdbfixer_1.8.1-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-pdbfixer Binary: python3-pdbfixer Architecture: all Version: 1.8.1-2 Maintainer: Debian Python Team Uploaders: Andrius Merkys , Homepage: https://github.com/openmm/pdbfixer Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/python-team/packages/python-pdbfixer Vcs-Git: https://salsa.debian.org/python-team/packages/python-pdbfixer.git Testsuite: autopkgtest Testsuite-Triggers: python3-pytest Build-Depends: debhelper-compat (= 13), dh-python, help2man, python3, python3-pytest , python3-setuptools, python3-simtk , rename Package-List: python3-pdbfixer deb python optional arch=all Checksums-Sha1: 07043785593ac0b693a12e9e2b580adec3eb8209 647653 python-pdbfixer_1.8.1.orig.tar.gz 33cea11c3cdafd7d3d7d16e66c38362fc07bf5cb 2776 python-pdbfixer_1.8.1-2.debian.tar.xz Checksums-Sha256: d50551abfe9dbaefc066f4d9d400cdebe57f1fefd9de9d01e12beb87efd99595 647653 python-pdbfixer_1.8.1.orig.tar.gz dfc0f6832974c8b84eb2f0458262df2cb0dbd8ea6811e27fcac8126d4d9a1305 2776 python-pdbfixer_1.8.1-2.debian.tar.xz Files: 9186c650d15bd3f0477ff7eadab24900 647653 python-pdbfixer_1.8.1.orig.tar.gz b803fa832e4c45f36202f58998b9158c 2776 python-pdbfixer_1.8.1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmJOf9sSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHN9AQAIMxzdWJUVl1GuvJLHU8y0P+sV29mnUR 1TXbvmr44dqKDElVIb8l2QeHwoXpE6PxnN/pUz/eaNfmh0M+3qJPRI+cXnbJuQW8 xYnTYi2jdmCNbgm6mCoEO/jY5/776qM+H9lKcXF/DDt4R5YijndANI88ucCrBB7G 5FbN3Q3l9qpNzMJX+5BVk9la8bUkc+vVQPirwaBrZTcVmpsVY+ykNqFhRw5lTimM DhhAKzK5U3SrrHZGL9xthUlSRLjNIS2Sq6BVvDdjHB7tAcvnMssYXdI7hYvASh05 ddXh2xgNU/t7rH12vxb+NR52jxzzq6kdoB5+Hg4PbDXl63ajw2Mvj+ahTDb3ex/a 5jFD4ofuwaby23wJHdWYYBKbhwlRcnYBRqo5+nxlAHTQOA4Nwy7F09+JPFYcLHIE Njt6K6c3k1FSJlE67GvkTRchKcJYKaXMC1XGrr01tfUg3g9eYRgLL91/pmb/s0b5 mXkSoetxnC0EaG64R58Zxfv5eNkX7BLZzpWYb+Q2DhiC/kP90UiGTdYb8U97CIXR pOG+T241ChvJjNLmQHqx74MVsdshBiReDEKYqPkNpn3HNlxlEaJGpuVPKilh0dtd zInDkEnNtQhNMtUbPITuvwVCiT+prEJRyC+5iAA3ujd1kJrXFNZfRyr5DpKJUzyC 5czkvNbMB4MJ =qGQb -----END PGP SIGNATURE----- Mon Nov 6 12:15:44 UTC 2023 I: Checking whether the package is not for us Mon Nov 6 12:15:44 UTC 2023 I: Starting 1st build on remote node ionos5-amd64.debian.net. Mon Nov 6 12:15:44 UTC 2023 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Mon Nov 6 12:19:11 UTC 2023 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Dec 8 06:38:47 -12 2024 I: pbuilder-time-stamp: 1733683127 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pdbfixer_1.8.1-2.dsc] I: copying [./python-pdbfixer_1.8.1.orig.tar.gz] I: copying [./python-pdbfixer_1.8.1-2.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Apr 6 18:08:27 2022 -12 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-pdbfixer_1.8.1-2.dsc: no acceptable signature found dpkg-source: info: extracting python-pdbfixer in python-pdbfixer-1.8.1 dpkg-source: info: unpacking python-pdbfixer_1.8.1.orig.tar.gz dpkg-source: info: unpacking python-pdbfixer_1.8.1-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1979718/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='c53e819bd5f24195b94eda0f1bcab7df' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1979718' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QfkkahVt/pbuilderrc_nsXb --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QfkkahVt/b1 --logfile b1/build.log python-pdbfixer_1.8.1-2.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 6.5.0-0.deb12.1-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.5.3-1~bpo12+1 (2023-10-08) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 2023 more -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Jul 28 2023 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar -rwxr-xr-x 1 root root 14520 Jul 28 2023 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/1979718/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, help2man, python3, python3-pytest, python3-setuptools, python3-simtk, rename dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19555 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-simtk; however: Package python3-simtk is not installed. pbuilder-satisfydepends-dummy depends on rename; however: Package rename is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} liblapack3{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libopenmm-dev{a} libopenmm7.7{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-attr{a} python3-distutils{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pytest{a} python3-setuptools{a} python3-simtk{a} python3.11{a} python3.11-minimal{a} readline-common{a} rename{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pygments wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 39.7 MB of archives. After unpacking 195 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 liblocale-gettext-perl amd64 1.07-5 [15.4 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 12 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u1 [687 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130+deb12u1 [104 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 help2man amd64 1.49.3 [198 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 libopenmm7.7 amd64 7.7.0+dfsg-9+b1 [856 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libopenmm-dev amd64 7.7.0+dfsg-9+b1 [327 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 54 http://deb.debian.org/debian bookworm/main amd64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 python3-py all 1.11.0-1 [89.2 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 python3-pytest all 7.2.1-2 [236 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 python3-simtk amd64 7.7.0+dfsg-9+b1 [3798 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 rename all 2.01-1 [21.0 kB] Fetched 39.7 MB in 1s (26.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. 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Setting up media-types (10.0.0) ... Setting up libpipeline1:amd64 (1.5.7-1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libopenmm7.7 (7.7.0+dfsg-9+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up rename (2.01-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up file (1:5.44-3) ... Setting up libopenmm-dev (7.7.0+dfsg-9+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up autopoint (0.21-12) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-pdbfixer-1.8.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pdbfixer_1.8.1-2_source.changes dpkg-buildpackage: info: source package python-pdbfixer dpkg-buildpackage: info: source version 1.8.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from python-pdbfixer-1.8.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem pybuild --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-pdbfixer-1.8.1' dh_auto_clean I: pybuild base:240: python3.11 setup.py clean running clean removing '/build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf pdbfixer.egg-info make[1]: Leaving directory '/build/reproducible-path/python-pdbfixer-1.8.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem pybuild --with python3 dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/python-pdbfixer-1.8.1' for TEST in test_build_and_simulate.py test_cli.py test_mutate.py; do mv pdbfixer/tests/${TEST} pdbfixer/tests/HIDE_${TEST}; done dh_auto_build I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer copying pdbfixer/uiserver.py -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer copying pdbfixer/ui.py -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer copying pdbfixer/pdbfixer.py -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer copying pdbfixer/__init__.py -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer creating /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/HIDE_test_mutate.py -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/HIDE_test_cli.py -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/HIDE_test_build_and_simulate.py -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/test_removechains.py -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/__init__.py -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/tests copying pdbfixer/soft.xml -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer creating /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/tests/data copying pdbfixer/tests/data/test.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/tests/data copying pdbfixer/tests/data/4JSV.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/tests/data creating /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/VAL.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/U.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/TYR.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/TRP.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/THR.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/SER.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/PRO.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/PHE.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/NME.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/MET.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/LYS.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/LEU.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/ILE.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/HIS.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/GLY.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/GLU.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/GLN.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/G.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/DT.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/DG.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/DC.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/DA.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/CYS.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/C.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/ASP.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/ASN.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/ARG.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/ALA.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/ACE.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/A.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates creating /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/images copying pdbfixer/images/logo_small.png -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/images copying pdbfixer/images/logo.svg -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/images copying pdbfixer/images/logo.png -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/images copying pdbfixer/images/background.jpg -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/images creating /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/html copying pdbfixer/html/start.html -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/html copying pdbfixer/html/saveFile.html -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/html copying pdbfixer/html/removeChains.html -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/html copying pdbfixer/html/quit.html -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/html copying pdbfixer/html/header.html -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/html copying pdbfixer/html/error.html -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/html copying pdbfixer/html/convertResidues.html -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/html copying pdbfixer/html/addResidues.html -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/html copying pdbfixer/html/addHydrogens.html -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/html copying pdbfixer/html/addHeavyAtoms.html -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/html rename 's/HIDE_//' pdbfixer/tests/HIDE_* make[1]: Leaving directory '/build/reproducible-path/python-pdbfixer-1.8.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-pdbfixer-1.8.1' dh_auto_test -- --test-pytest I: pybuild base:240: cd /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build; python3.11 -m pytest ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack rootdir: /build/reproducible-path/python-pdbfixer-1.8.1 collected 2 items pdbfixer/tests/test_removechains.py .. [100%] ============================== 2 passed in 59.29s ============================== make[1]: Leaving directory '/build/reproducible-path/python-pdbfixer-1.8.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-pdbfixer/ -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py copying pdbfixer/tests/test_mutate.py -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/test_cli.py -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/test_build_and_simulate.py -> /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/tests running install_lib creating /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr creating /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib creating /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11 creating /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages creating /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer creating /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/__pycache__ copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/__pycache__/pdbfixer.cpython-311.pyc -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/__pycache__ copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/__pycache__ creating /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/html/addHeavyAtoms.html -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/html/addHydrogens.html -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/html/addResidues.html -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/html/convertResidues.html -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/html/error.html -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/html/header.html -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/html/quit.html -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/html/removeChains.html -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/html/saveFile.html -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/html/start.html -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/html creating /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/images copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/images/background.jpg -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/images copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/images/logo.png -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/images copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/images/logo.svg -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/images copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/images/logo_small.png -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/images creating /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/A.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/ACE.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/ALA.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/ARG.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/ASN.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/ASP.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/C.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/CYS.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/DA.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/DC.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/DG.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/DT.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/G.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/GLN.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/GLU.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/GLY.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/HIS.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/ILE.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/LEU.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/LYS.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/MET.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/NME.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/PHE.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/PRO.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/SER.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/THR.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/TRP.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/TYR.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/U.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/templates/VAL.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/soft.xml -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer creating /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/tests/test_build_and_simulate.py -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/tests/test_cli.py -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/tests/test_mutate.py -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/tests creating /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/tests/__pycache__ copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/tests/__pycache__/test_removechains.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/tests/__pycache__ copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/tests/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/tests/__pycache__ creating /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/tests/data copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/tests/data/4JSV.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/tests/data copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/tests/data/test.pdb -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/tests/data copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/tests/__init__.py -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/tests/test_removechains.py -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/tests/HIDE_test_build_and_simulate.py -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/tests/HIDE_test_cli.py -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/tests/HIDE_test_mutate.py -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/__init__.py -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/pdbfixer.py -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/ui.py -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer copying /build/reproducible-path/python-pdbfixer-1.8.1/.pybuild/cpython3_3.11_pdbfixer/build/pdbfixer/uiserver.py -> /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer byte-compiling /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/tests/test_build_and_simulate.py to test_build_and_simulate.cpython-311.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/tests/test_cli.py to test_cli.cpython-311.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/tests/test_mutate.py to test_mutate.cpython-311.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/tests/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/tests/test_removechains.py to test_removechains.cpython-311.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/tests/HIDE_test_build_and_simulate.py to HIDE_test_build_and_simulate.cpython-311.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/tests/HIDE_test_cli.py to HIDE_test_cli.cpython-311.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/tests/HIDE_test_mutate.py to HIDE_test_mutate.cpython-311.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/pdbfixer.py to pdbfixer.cpython-311.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/ui.py to ui.cpython-311.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer/uiserver.py to uiserver.cpython-311.pyc running install_egg_info running egg_info creating pdbfixer.egg-info writing pdbfixer.egg-info/PKG-INFO writing dependency_links to pdbfixer.egg-info/dependency_links.txt writing entry points to pdbfixer.egg-info/entry_points.txt writing requirements to pdbfixer.egg-info/requires.txt writing top-level names to pdbfixer.egg-info/top_level.txt writing manifest file 'pdbfixer.egg-info/SOURCES.txt' reading manifest file 'pdbfixer.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'pdbfixer.egg-info/SOURCES.txt' Copying pdbfixer.egg-info to /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/lib/python3.11/dist-packages/pdbfixer-1.8.1.egg-info Skipping SOURCES.txt running install_scripts Installing pdbfixer script to /build/reproducible-path/python-pdbfixer-1.8.1/debian/python3-pdbfixer/usr/bin dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/python-pdbfixer-1.8.1' PYTHONPATH=. help2man debian/python3-pdbfixer/usr/bin/pdbfixer --no-info \ --name 'Fix problems in Protein Data Bank files' \ --version-string "1.8.1" > pdbfixer.1 dh_installman pdbfixer.1 make[1]: Leaving directory '/build/reproducible-path/python-pdbfixer-1.8.1' debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/python-pdbfixer-1.8.1' dh_python3 rm debian/python3-pdbfixer/usr/lib/python3/dist-packages/pdbfixer/tests/HIDE_* make[1]: Leaving directory '/build/reproducible-path/python-pdbfixer-1.8.1' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pdbfixer' in '../python3-pdbfixer_1.8.1-2_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pdbfixer_1.8.1-2_amd64.buildinfo dpkg-genchanges --build=binary -O../python-pdbfixer_1.8.1-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-pdbfixer-1.8.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1979718 and its subdirectories I: Current time: Sun Dec 8 06:42:10 -12 2024 I: pbuilder-time-stamp: 1733683330 Mon Nov 6 12:19:11 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Mon Nov 6 12:19:11 UTC 2023 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Mon Nov 6 12:25:34 UTC 2023 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Mon Nov 6 12:25:34 UTC 2023 I: python-pdbfixer_1.8.1-2_amd64.changes: Format: 1.8 Date: Thu, 07 Apr 2022 02:07:24 -0400 Source: python-pdbfixer Binary: python3-pdbfixer Architecture: all Version: 1.8.1-2 Distribution: unstable Urgency: medium Maintainer: Debian Python Team Changed-By: Andrius Merkys Description: python3-pdbfixer - Fix problems in Protein Data Bank files (Python 3) Changes: python-pdbfixer (1.8.1-2) unstable; urgency=medium . * Drop dependency on python3-all to build only on default Python version. * Limit autopkgtest to architectures where python3-simtk is installable. * Remove hidden tests from the binary package. * Wrap and sort. Checksums-Sha1: df0d49bd0f75a68fd48605e3645a0202fa7b1c75 6008 python-pdbfixer_1.8.1-2_amd64.buildinfo 3fd71be444f1e0051ba359bf9acb8c1d126b0f6a 439004 python3-pdbfixer_1.8.1-2_all.deb Checksums-Sha256: e576342144ab9b65a4f8225fb581cb85995248f2fd53c303f31696a5729f3e46 6008 python-pdbfixer_1.8.1-2_amd64.buildinfo 694f7fbb479e4ef9834b4d268b5b00f8e83056a6764a80b1f2667a6941c544ce 439004 python3-pdbfixer_1.8.1-2_all.deb Files: a465bfaa9cb3f6e49cbc7a4e15dc0724 6008 python optional python-pdbfixer_1.8.1-2_amd64.buildinfo bdd2ade00c5b3f5bcdff67a282289d4f 439004 python optional python3-pdbfixer_1.8.1-2_all.deb Mon Nov 6 12:25:35 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.QfkkahVt/python-pdbfixer_1.8.1-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.QfkkahVt/python-pdbfixer_1.8.1-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.QfkkahVt/python-pdbfixer_1.8.1-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.QfkkahVt/b1/python-pdbfixer_1.8.1-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.QfkkahVt/b2/python-pdbfixer_1.8.1-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.271s) 0.271s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.018s) 0.018s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Mon Nov 6 12:25:35 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Mon Nov 6 12:25:35 UTC 2023 I: python-pdbfixer from bookworm built successfully and reproducibly on amd64. Mon Nov 6 12:25:36 UTC 2023 I: Submitting .buildinfo files to external archives: Mon Nov 6 12:25:36 UTC 2023 I: Submitting 8.0K b1/python-pdbfixer_1.8.1-2_amd64.buildinfo.asc Mon Nov 6 12:26:06 UTC 2023 E: Could not submit buildinfo from b1 to http://buildinfo.debian.net/api/submit Mon Nov 6 12:26:06 UTC 2023 I: Submitting 8.0K b2/python-pdbfixer_1.8.1-2_amd64.buildinfo.asc Mon Nov 6 12:26:36 UTC 2023 E: Could not submit buildinfo from b2 to http://buildinfo.debian.net/api/submit Mon Nov 6 12:26:36 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Nov 6 12:26:36 UTC 2023 I: Done submitting .buildinfo files. Mon Nov 6 12:26:36 UTC 2023 I: Removing signed python-pdbfixer_1.8.1-2_amd64.buildinfo.asc files: removed './b1/python-pdbfixer_1.8.1-2_amd64.buildinfo.asc' removed './b2/python-pdbfixer_1.8.1-2_amd64.buildinfo.asc'