Wed May 10 17:36:18 UTC 2023 I: starting to build python-dendropy/bookworm/amd64 on jenkins on '2023-05-10 17:36' Wed May 10 17:36:18 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_12/33271/console.log Wed May 10 17:36:18 UTC 2023 I: Downloading source for bookworm/python-dendropy=4.5.2-1 --2023-05-10 17:36:18-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-dendropy/python-dendropy_4.5.2-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2148 (2.1K) [text/prs.lines.tag] Saving to: ‘python-dendropy_4.5.2-1.dsc’ 0K .. 100% 22.2M=0s 2023-05-10 17:36:19 (22.2 MB/s) - ‘python-dendropy_4.5.2-1.dsc’ saved [2148/2148] Wed May 10 17:36:19 UTC 2023 I: python-dendropy_4.5.2-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-dendropy Binary: python3-dendropy, sumtrees Architecture: all Version: 4.5.2-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://dendropy.org/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/python-dendropy Vcs-Git: https://salsa.debian.org/med-team/python-dendropy.git Testsuite: autopkgtest, autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools Package-List: python3-dendropy deb python optional arch=all sumtrees deb python optional arch=all Checksums-Sha1: f23749dd5d537570559bb11e0dbdbb130a62eb09 7714348 python-dendropy_4.5.2.orig.tar.xz 9714d6edc6601a4c581f660ad0acc177c273a076 9048 python-dendropy_4.5.2-1.debian.tar.xz Checksums-Sha256: 68f10ae8091c7df1598555a6d8c2a110bb16c9e34f8d1b3937f69e120da282fd 7714348 python-dendropy_4.5.2.orig.tar.xz d8254fdd9428fdca46f2d116adbc296dfe595284355d2054bd0c85aba3452328 9048 python-dendropy_4.5.2-1.debian.tar.xz Files: 3b75fffc0ca15132e5ed2068171404ca 7714348 python-dendropy_4.5.2.orig.tar.xz 6337e213c224fbcdba6c3607f8b9db76 9048 python-dendropy_4.5.2-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmEZBK0UHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafG3xA//aIxfTfsR16davF2O3sXmpfpFiyBI HquhCwPirSZ91tOKTMBPdipsWnG8t1H+hxNe29MKB/ONuC4vnq15iwWu0Syxkypr RXLuBOhtZBvHnXbZNlo0hXKRwYK8rRyzwsBCSlxPAaRcfQQyEybMZt034Jxklx7l JO0H6u/fPNOSlImHUSVJpUQX/BfWHU1GAyxZ8TTZfCgmSApL6fwkR8JR4dv6ziZi f/lS/ypc6HBla7uohTr19AcWpj+xtwxTUSDbOecwnervCyskz211BQJmdli9xmfv 2NTYIwsn7bDSHahVnEqQ8V/6ni/3mlYK7yv2/h6vGOF3GtByzKmc9OiFphQy9RMT gfrPQiFr+VNVgIMaopOYzpSN0AZ19IbwbD7sp6RiNPMigxy/jnveXW+pL+sFOr7K zEzQ2PsZ8ZhjwKu/jbxba/GClLH5fy7Hh4i2eCvYTAmELfgTGELFERnGOFwdjH/t WpmJepT5/hGMcg1yjgGbw/xxgqdPs/oZrVOeOKJtIpFWFWZujZEkeeVTon5fy+9N Ctlf8qqtjRLTmlFuAtcj+Y7v8p+RDZ61dpbuLG3uV+TfUdtCBWuvXSj+tfs601+F hCxPMoIY9uU60koyMtknMyhOdIzx07WcVELj0UIcVew0gOyObagal7GWP8ivjnU9 Rf2ZUBekxPvRhF4= =Nfb8 -----END PGP SIGNATURE----- Wed May 10 17:36:19 UTC 2023 I: Checking whether the package is not for us Wed May 10 17:36:19 UTC 2023 I: Starting 1st build on remote node ionos15-amd64.debian.net. Wed May 10 17:36:19 UTC 2023 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Wed May 10 17:37:47 UTC 2023 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jun 11 11:59:24 -12 2024 I: pbuilder-time-stamp: 1718150364 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-dendropy_4.5.2-1.dsc] I: copying [./python-dendropy_4.5.2.orig.tar.xz] I: copying [./python-dendropy_4.5.2-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Aug 15 00:12:29 2021 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-dendropy_4.5.2-1.dsc: no acceptable signature found dpkg-source: info: extracting python-dendropy in python-dendropy-4.5.2 dpkg-source: info: unpacking python-dendropy_4.5.2.orig.tar.xz dpkg-source: info: unpacking python-dendropy_4.5.2-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying do_not_try_running_non-existing_testsuite.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2726695/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='9059723f438546aca275356e2e0a9e9b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2726695' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vtvIv4PJ/pbuilderrc_gkga --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vtvIv4PJ/b1 --logfile b1/build.log python-dendropy_4.5.2-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 2023 more -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/2726695/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 47 newly installed, 0 to remove and 0 not upgraded. Need to get 25.5 MB of archives. After unpacking 100 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130 [104 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get: 46 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Fetched 25.5 MB in 1s (43.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19912 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../3-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_amd64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_amd64.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-dendropy-4.5.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-dendropy_4.5.2-1_source.changes dpkg-buildpackage: info: source package python-dendropy dpkg-buildpackage: info: source version 4.5.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py clean -setup.py: DendroPy version 4.5.2 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running clean removing '/build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config -setup.py: DendroPy version 4.5.2 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build -setup.py: DendroPy version 4.5.2 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running build running build_py creating /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy copying src/dendropy/__main__.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy copying src/dendropy/__init__.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy creating /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/vcsinfo.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/urlio.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/timeprocessing.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/textprocessing.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/terminal.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/processio.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/metavar.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/messaging.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/filesys.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/error.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/deprecate.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/debug.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/container.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/constants.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/cli.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/bitprocessing.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/bibtex.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/__init__.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility creating /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate copying src/dendropy/simulate/treesim.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate copying src/dendropy/simulate/popgensim.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate copying src/dendropy/simulate/charsim.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate copying src/dendropy/simulate/__init__.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate creating /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/model copying src/dendropy/model/treeshape.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/model copying src/dendropy/model/reconcile.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/model copying src/dendropy/model/protractedspeciation.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/model copying src/dendropy/model/parsimony.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/model copying src/dendropy/model/multispeciescoalescent.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/model copying src/dendropy/model/discrete.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/model copying src/dendropy/model/continuous.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/model copying src/dendropy/model/coalescent.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/model copying src/dendropy/model/birthdeath.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/model copying src/dendropy/model/__init__.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/model creating /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib copying src/dendropy/mathlib/statistics.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib copying src/dendropy/mathlib/probability.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib copying src/dendropy/mathlib/mathfn.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib copying src/dendropy/mathlib/__init__.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib creating /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treesum.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treesplit.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treesim.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treemanip.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treecalc.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/seqsim.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/seqmodel.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/reconcile.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/popgenstat.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/popgensim.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/ncbi.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/continuous.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/coalescent.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/__init__.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy creating /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/seqgen.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/rstats.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/rspr.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/raxml.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/paup.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/muscle.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/itol.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/genbank.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/gbif.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/ete.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/entrez.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/biopython.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/ape.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/__init__.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop creating /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/treemodel.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/treecollectionmodel.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/taxonmodel.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/datasetmodel.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/charstatemodel.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/charmatrixmodel.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/basemodel.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/__init__.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel creating /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/xmlprocessing.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/tokenizer.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/phylipwriter.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/phylipreader.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexusyielder.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexuswriter.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexusreader.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexusprocessing.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexmlyielder.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexmlwriter.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexmlreader.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/newickyielder.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/newickwriter.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/newickreader.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/newick.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/multiphylipreader.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/ioservice.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/fastawriter.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/fastareader.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/__init__.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio creating /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate copying src/dendropy/calculate/treesum.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate copying src/dendropy/calculate/treescore.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate copying src/dendropy/calculate/treemeasure.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate copying src/dendropy/calculate/treecompare.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate copying src/dendropy/calculate/statistics.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate copying src/dendropy/calculate/profiledistance.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate copying src/dendropy/calculate/probability.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate copying src/dendropy/calculate/popgenstat.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate copying src/dendropy/calculate/phylogeneticdistance.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate copying src/dendropy/calculate/mathfn.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate copying src/dendropy/calculate/combinatorics.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate copying src/dendropy/calculate/__init__.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate creating /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/libexec copying src/dendropy/utility/libexec/__init__.py -> /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/libexec running egg_info writing src/DendroPy.egg-info/PKG-INFO writing dependency_links to src/DendroPy.egg-info/dependency_links.txt deleting src/DendroPy.egg-info/entry_points.txt writing requirements to src/DendroPy.egg-info/requires.txt writing top-level names to src/DendroPy.egg-info/top_level.txt reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution adding license file 'LICENSE.rst' writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' running build_scripts creating build creating build/scripts-3.11 copying and adjusting applications/sumtrees/sumtrees.py -> build/scripts-3.11 copying and adjusting applications/sumlabels/sumlabels.py -> build/scripts-3.11 copying and adjusting applications/dendropy-format/dendropy-format -> build/scripts-3.11 changing mode of build/scripts-3.11/sumtrees.py from 644 to 755 changing mode of build/scripts-3.11/sumlabels.py from 644 to 755 changing mode of build/scripts-3.11/dendropy-format from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py test -setup.py: DendroPy version 4.5.2 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running test WARNING: Testing via this command is deprecated and will be removed in a future version. Users looking for a generic test entry point independent of test runner are encouraged to use tox. running egg_info writing src/DendroPy.egg-info/PKG-INFO writing dependency_links to src/DendroPy.egg-info/dependency_links.txt writing requirements to src/DendroPy.egg-info/requires.txt writing top-level names to src/DendroPy.egg-info/top_level.txt reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution adding license file 'LICENSE.rst' writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' running build_ext ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/python-dendropy-4.5.2/debian/python3-dendropy -setup.py: DendroPy version 4.5.2 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing src/DendroPy.egg-info/PKG-INFO writing dependency_links to src/DendroPy.egg-info/dependency_links.txt writing requirements to src/DendroPy.egg-info/requires.txt writing top-level names to src/DendroPy.egg-info/top_level.txt reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution adding license file 'LICENSE.rst' writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/python-dendropy-4.5.2/debian/python3-dendropy creating /build/python-dendropy-4.5.2/debian/python3-dendropy/usr creating /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib creating /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11 creating /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages creating /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy creating /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate/__init__.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate/combinatorics.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate/mathfn.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate/phylogeneticdistance.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate/popgenstat.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate/probability.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate/profiledistance.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate/statistics.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate/treecompare.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate/treemeasure.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate/treescore.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate/treesum.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate creating /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/__init__.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/fastareader.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/fastawriter.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/ioservice.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/multiphylipreader.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/newick.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/newickreader.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/newickwriter.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/newickyielder.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/nexmlreader.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/nexmlwriter.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/nexmlyielder.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/nexusprocessing.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/nexusreader.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/nexuswriter.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/nexusyielder.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/phylipreader.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/phylipwriter.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/tokenizer.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/xmlprocessing.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio creating /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/__init__.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/basemodel.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/charmatrixmodel.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/charstatemodel.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/datasetmodel.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/taxonmodel.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/treecollectionmodel.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/treemodel.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel creating /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/__init__.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/ape.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/biopython.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/entrez.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/ete.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/gbif.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/genbank.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/itol.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/muscle.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/paup.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/raxml.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/rspr.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/rstats.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/seqgen.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop creating /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/__init__.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/coalescent.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/continuous.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/ncbi.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/popgensim.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/popgenstat.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/reconcile.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/seqmodel.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/seqsim.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/treecalc.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/treemanip.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/treesim.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/treesplit.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/treesum.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy creating /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/mathlib copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib/__init__.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/mathlib copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib/mathfn.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/mathlib copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib/probability.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/mathlib copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib/statistics.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/mathlib creating /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/model/__init__.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/model/birthdeath.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/model/coalescent.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/model/continuous.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/model/discrete.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/model/multispeciescoalescent.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/model/parsimony.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/model/protractedspeciation.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/model/reconcile.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/model/treeshape.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model creating /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/simulate copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate/__init__.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/simulate copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate/charsim.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/simulate copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate/popgensim.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/simulate copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate/treesim.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/simulate creating /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility creating /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/libexec copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/libexec/__init__.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/libexec copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/__init__.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/bibtex.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/bitprocessing.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/cli.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/constants.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/container.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/debug.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/deprecate.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/error.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/filesys.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/messaging.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/metavar.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/processio.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/terminal.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/textprocessing.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/timeprocessing.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/urlio.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/vcsinfo.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/__init__.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy copying /build/python-dendropy-4.5.2/.pybuild/cpython3_3.11_dendropy/build/dendropy/__main__.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate/combinatorics.py to combinatorics.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate/mathfn.py to mathfn.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate/phylogeneticdistance.py to phylogeneticdistance.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate/popgenstat.py to popgenstat.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate/probability.py to probability.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate/profiledistance.py to profiledistance.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate/statistics.py to statistics.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate/treecompare.py to treecompare.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate/treemeasure.py to treemeasure.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate/treescore.py to treescore.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate/treesum.py to treesum.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/fastareader.py to fastareader.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/fastawriter.py to fastawriter.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/ioservice.py to ioservice.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/multiphylipreader.py to multiphylipreader.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/newick.py to newick.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/newickreader.py to newickreader.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/newickwriter.py to newickwriter.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/newickyielder.py to newickyielder.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/nexmlreader.py to nexmlreader.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/nexmlwriter.py to nexmlwriter.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/nexmlyielder.py to nexmlyielder.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/nexusprocessing.py to nexusprocessing.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/nexusreader.py to nexusreader.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/nexuswriter.py to nexuswriter.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/nexusyielder.py to nexusyielder.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/phylipreader.py to phylipreader.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/phylipwriter.py to phylipwriter.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/tokenizer.py to tokenizer.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/xmlprocessing.py to xmlprocessing.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/basemodel.py to basemodel.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/charmatrixmodel.py to charmatrixmodel.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/charstatemodel.py to charstatemodel.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/datasetmodel.py to datasetmodel.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/taxonmodel.py to taxonmodel.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/treecollectionmodel.py to treecollectionmodel.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/treemodel.py to treemodel.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/ape.py to ape.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/biopython.py to biopython.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/entrez.py to entrez.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/ete.py to ete.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/gbif.py to gbif.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/genbank.py to genbank.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/itol.py to itol.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/muscle.py to muscle.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/paup.py to paup.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/raxml.py to raxml.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/rspr.py to rspr.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/rstats.py to rstats.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/seqgen.py to seqgen.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/coalescent.py to coalescent.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/continuous.py to continuous.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/ncbi.py to ncbi.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/popgensim.py to popgensim.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/popgenstat.py to popgenstat.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/reconcile.py to reconcile.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/seqmodel.py to seqmodel.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/seqsim.py to seqsim.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/treecalc.py to treecalc.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/treemanip.py to treemanip.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/treesim.py to treesim.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/treesplit.py to treesplit.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/treesum.py to treesum.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/mathlib/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/mathlib/mathfn.py to mathfn.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/mathlib/probability.py to probability.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/mathlib/statistics.py to statistics.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model/birthdeath.py to birthdeath.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model/coalescent.py to coalescent.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model/continuous.py to continuous.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model/discrete.py to discrete.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model/multispeciescoalescent.py to multispeciescoalescent.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model/parsimony.py to parsimony.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model/protractedspeciation.py to protractedspeciation.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model/reconcile.py to reconcile.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model/treeshape.py to treeshape.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/simulate/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/simulate/charsim.py to charsim.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/simulate/popgensim.py to popgensim.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/simulate/treesim.py to treesim.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/libexec/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/bibtex.py to bibtex.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/bitprocessing.py to bitprocessing.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/cli.py to cli.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/constants.py to constants.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/container.py to container.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/debug.py to debug.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/deprecate.py to deprecate.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/error.py to error.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/filesys.py to filesys.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/messaging.py to messaging.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/metavar.py to metavar.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/processio.py to processio.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/terminal.py to terminal.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/textprocessing.py to textprocessing.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/timeprocessing.py to timeprocessing.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/urlio.py to urlio.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/vcsinfo.py to vcsinfo.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/__main__.py to __main__.cpython-311.pyc running install_egg_info Copying src/DendroPy.egg-info to /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/lib/python3.11/dist-packages/DendroPy-4.5.2.egg-info Skipping SOURCES.txt running install_scripts creating /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/bin copying build/scripts-3.11/dendropy-format -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/bin copying build/scripts-3.11/sumlabels.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/bin copying build/scripts-3.11/sumtrees.py -> /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/bin changing mode of /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/bin/dendropy-format to 755 changing mode of /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/bin/sumlabels.py to 755 changing mode of /build/python-dendropy-4.5.2/debian/python3-dendropy/usr/bin/sumtrees.py to 755 debian/rules override_dh_install make[1]: Entering directory '/build/python-dendropy-4.5.2' dh_install mkdir -p debian/sumtrees/usr/bin mv debian/python3-dendropy/usr/bin/sumtrees.py debian/sumtrees/usr/bin/sumtrees mv applications/dendropy-format/dendropy-format debian/sumtrees/usr/bin/dendropy-format rm -rf debian/python3-dendropy/usr/bin make[1]: Leaving directory '/build/python-dendropy-4.5.2' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/sumtrees/usr/bin/dendropy-format dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package sumtrees: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package python3-dendropy: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-dendropy' in '../python3-dendropy_4.5.2-1_all.deb'. dpkg-deb: building package 'sumtrees' in '../sumtrees_4.5.2-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-dendropy_4.5.2-1_amd64.buildinfo dpkg-genchanges --build=binary -O../python-dendropy_4.5.2-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2726695 and its subdirectories I: Current time: Tue Jun 11 12:00:47 -12 2024 I: pbuilder-time-stamp: 1718150447 Wed May 10 17:37:48 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Wed May 10 17:37:48 UTC 2023 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Wed May 10 17:38:32 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Wed May 10 17:38:32 UTC 2023 I: python-dendropy_4.5.2-1_amd64.changes: Format: 1.8 Date: Sun, 15 Aug 2021 17:41:22 +0530 Source: python-dendropy Binary: python3-dendropy sumtrees Architecture: all Version: 4.5.2-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: python3-dendropy - DendroPy Phylogenetic Computing Library (Python 3) sumtrees - Phylogenetic Tree Summarization and Annotation Changes: python-dendropy (4.5.2-1) unstable; urgency=medium . * Team Upload. * New upstream version 4.5.2 * Declare compliance with policy 4.5.1 Checksums-Sha1: e1d7e08dab4393c7b2d107add322a3a36bb6b0bb 5730 python-dendropy_4.5.2-1_amd64.buildinfo 93b3f43b3bb898291e412decf253e8af58defe20 274392 python3-dendropy_4.5.2-1_all.deb c8279b55abb73525cd8367615258ca3faf5056ba 183976 sumtrees_4.5.2-1_all.deb Checksums-Sha256: f1907e94a0d72eac77ca18c08bd37bdb8ad154c4eb3b5453447935e26539df85 5730 python-dendropy_4.5.2-1_amd64.buildinfo 7b06115f8c23e7ed18dbb38814e892d7898e477059f8e42b8776c8050b5cc15c 274392 python3-dendropy_4.5.2-1_all.deb d40cbf79e5bb0a79dcf784e824c199aed510a194997fb217a85d55beb67bacd9 183976 sumtrees_4.5.2-1_all.deb Files: 0a00a2f76d864c2932877deb19318425 5730 python optional python-dendropy_4.5.2-1_amd64.buildinfo 21e60e426a2a4acd0cb0ce6d8e5ec449 274392 python optional python3-dendropy_4.5.2-1_all.deb 0c3677de87de935f1ee858349298aeb4 183976 python optional sumtrees_4.5.2-1_all.deb Wed May 10 17:38:33 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.vtvIv4PJ/python-dendropy_4.5.2-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.vtvIv4PJ/python-dendropy_4.5.2-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.vtvIv4PJ/python-dendropy_4.5.2-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.vtvIv4PJ/b1/python-dendropy_4.5.2-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.vtvIv4PJ/b2/python-dendropy_4.5.2-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.386s) 0.386s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.024s) 0.024s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Wed May 10 17:38:37 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Wed May 10 17:38:37 UTC 2023 I: python-dendropy from bookworm built successfully and reproducibly on amd64. Wed May 10 17:38:39 UTC 2023 I: Submitting .buildinfo files to external archives: Wed May 10 17:38:39 UTC 2023 I: Submitting 8.0K b1/python-dendropy_4.5.2-1_amd64.buildinfo.asc Wed May 10 17:38:39 UTC 2023 I: Submitting 8.0K b2/python-dendropy_4.5.2-1_amd64.buildinfo.asc Wed May 10 17:38:40 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed May 10 17:38:40 UTC 2023 I: Done submitting .buildinfo files. Wed May 10 17:38:40 UTC 2023 I: Removing signed python-dendropy_4.5.2-1_amd64.buildinfo.asc files: removed './b1/python-dendropy_4.5.2-1_amd64.buildinfo.asc' removed './b2/python-dendropy_4.5.2-1_amd64.buildinfo.asc'