Thu Apr 27 03:21:03 UTC 2023 I: starting to build python-bx/bookworm/amd64 on jenkins on '2023-04-27 03:20' Thu Apr 27 03:21:03 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_4/19516/console.log Thu Apr 27 03:21:03 UTC 2023 I: Downloading source for bookworm/python-bx=0.9.0-1 --2023-04-27 03:21:04-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-bx/python-bx_0.9.0-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2217 (2.2K) [text/prs.lines.tag] Saving to: ‘python-bx_0.9.0-1.dsc’ 0K .. 100% 136M=0s 2023-04-27 03:21:04 (136 MB/s) - ‘python-bx_0.9.0-1.dsc’ saved [2217/2217] Thu Apr 27 03:21:04 UTC 2023 I: python-bx_0.9.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-bx Binary: python3-bx Architecture: any Version: 0.9.0-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Michael R. Crusoe Homepage: https://github.com/bxlab/bx-python Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/python-bx Vcs-Git: https://salsa.debian.org/med-team/python-bx.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-python, zlib1g-dev, python3-setuptools, python3-all-dev:any, python3-lzo, python3-pytest , python3-pytest-cython , python3-numpy , python3-six, cython3 Package-List: python3-bx deb python optional arch=any Checksums-Sha1: de436450ec4afc5a02343ecba46d44830c74b00b 1667445 python-bx_0.9.0.orig.tar.gz 33c5b6846b98c187f37a0d0fcd4e2c9e1c40497c 11964 python-bx_0.9.0-1.debian.tar.xz Checksums-Sha256: 0eb3992c9f0c54bb8cecf1e9a8a6356de69221edf3b6025a69608b2fcec18cc7 1667445 python-bx_0.9.0.orig.tar.gz a87f962b270a77fbf7453d64f443db1c78f449e1f75e517cb765684bca150449 11964 python-bx_0.9.0-1.debian.tar.xz Files: c98048394289beb9d498992ebdfe494d 1667445 python-bx_0.9.0.orig.tar.gz 201153a3b14fb985c516714c9768cfe8 11964 python-bx_0.9.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmNJzeURHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHn+w/+Nvhj8e9VUxzs7KRb/kZhT91LH9hlxUFL 6HDWO//GPGcgY7i8qXCh1mtRLlUBuLuEICTwEyuAFcCWtvKl3lS094JHRDwABSN/ 0quU3zI4zIcqADHekpDcB4m6P+3o8eBStIrqsPhoE03SqRs4KFVcFk71VEnFUAwS EexwcO3gac4m+1R11CRvhCfNMRUXMmxXkjuwWwhtxJdspSVzXO85S2uwPvZuRQpR sk9pyvRwlh9r+AGLB0jrktbvL7LDLMCIU5ohV8iBDyyB0PlXiRxkzzJ5LyNADFAR TWpVdN3aaWVmL2JMw2Ga4/WdAOQGMDdpt8YVPv6jTKL3tx8zy+hfrwQeFZqrMzRA nuuHUpGMwDkCI3EcVDuWraDFKscTJ+dYolsMdkDVJZO9pEBdqhebUTC+G0srusb9 TFnG7IOy8T9RRK39h9ZAMuxKocF6xqxRw12wC+Bie6A9YHiZ6f777T02Ow7KROPi VPybs+uljO8Xkdte7ct8dXWzG/vZDsY2xio+cXG3V9aaXqsk36n3FYbyEkkjjpy1 kfrKeF46kZC6PqrUZ1Zka77oT3InK6fmKfutyi/g4gXHGkLisI9e+vOPKcKqGDme 8ESZzTiuiwym5hFhcWtbnoSdd9yV2RYFtIpbVGrTE7oEFOSokjRgmUgauh9gC8Os /VVQKr1voMA= =F8OM -----END PGP SIGNATURE----- Thu Apr 27 03:21:04 UTC 2023 I: Checking whether the package is not for us Thu Apr 27 03:21:04 UTC 2023 I: Starting 1st build on remote node ionos15-amd64.debian.net. Thu Apr 27 03:21:04 UTC 2023 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Thu Apr 27 03:23:24 UTC 2023 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue May 28 21:44:05 -12 2024 I: pbuilder-time-stamp: 1716975845 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-bx_0.9.0-1.dsc] I: copying [./python-bx_0.9.0.orig.tar.gz] I: copying [./python-bx_0.9.0-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Oct 14 09:00:21 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-bx_0.9.0-1.dsc: no acceptable signature found dpkg-source: info: extracting python-bx in python-bx-0.9.0 dpkg-source: info: unpacking python-bx_0.9.0.orig.tar.gz dpkg-source: info: unpacking python-bx_0.9.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying shebang.patch dpkg-source: info: applying fix_BIN_OFFSETS_MAX I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/141464/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='88a505f8175c4d9a93f363909acb193d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='141464' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.if8DH31F/pbuilderrc_tro1 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.if8DH31F/b1 --logfile b1/build.log python-bx_0.9.0-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 2023 more -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/141464/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, zlib1g-dev, python3-setuptools, python3-all-dev:any, python3-lzo, python3-pytest, python3-pytest-cython, python3-numpy, python3-six, cython3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev:any. pbuilder-satisfydepends-dummy depends on python3-lzo; however: Package python3-lzo is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-cython; however: Package python3-pytest-cython is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-six; however: Package python3-six is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblzo2-2{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-dev{a} python3-distutils{a} python3-iniconfig{a} python3-lib2to3{a} python3-lzo{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pytest{a} python3-pytest-cython{a} python3-setuptools{a} python3-six{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pygments wget 0 packages upgraded, 75 newly installed, 0 to remove and 0 not upgraded. Need to get 44.9 MB of archives. After unpacking 187 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 cython3 amd64 0.29.32-2+b1 [1302 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-2 [131 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130 [104 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6 [4738 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get: 59 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get: 60 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6 [615 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Get: 63 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 65 http://deb.debian.org/debian bookworm/main amd64 python3-lzo amd64 1.14-1+b3 [7712 B] Get: 66 http://deb.debian.org/debian bookworm/main amd64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 python3-py all 1.11.0-1 [89.2 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 python3-pytest all 7.2.1-2 [236 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 python3-pytest-cython all 0.1.1-1 [8068 B] Get: 74 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Fetched 44.9 MB in 1s (86.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19912 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../3-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_amd64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20346 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.38.1-5+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../09-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.11.2-2_amd64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. 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Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../21-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../24-libelf1_0.188-2.1_amd64.deb ... Unpacking libelf1:amd64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.15-1_amd64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../26-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../27-libxml2_2.9.14+dfsg-1.2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.21-12_amd64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../32-python3-lib2to3_3.11.2-2_all.deb ... Unpacking python3-lib2to3 (3.11.2-2) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../33-python3-distutils_3.11.2-2_all.deb ... Unpacking python3-distutils (3.11.2-2) ... Selecting previously unselected package dh-python. Preparing to unpack .../34-dh-python_5.20230130_all.deb ... Unpacking dh-python (5.20230130) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../35-libblas3_3.11.0-2_amd64.deb ... Unpacking libblas3:amd64 (3.11.0-2) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../36-libexpat1-dev_2.5.0-1_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.5.0-1) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../37-libgfortran5_12.2.0-14_amd64.deb ... Unpacking libgfortran5:amd64 (12.2.0-14) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../38-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../39-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../40-libjs-sphinxdoc_5.3.0-4_all.deb ... Unpacking libjs-sphinxdoc (5.3.0-4) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../41-liblapack3_3.11.0-2_amd64.deb ... Unpacking liblapack3:amd64 (3.11.0-2) ... Selecting previously unselected package liblzo2-2:amd64. Preparing to unpack .../42-liblzo2-2_2.10-2_amd64.deb ... Unpacking liblzo2-2:amd64 (2.10-2) ... Selecting previously unselected package libpython3.11:amd64. Preparing to unpack .../43-libpython3.11_3.11.2-6_amd64.deb ... Unpacking libpython3.11:amd64 (3.11.2-6) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../44-zlib1g-dev_1%3a1.2.13.dfsg-1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Selecting previously unselected package libpython3.11-dev:amd64. Preparing to unpack .../45-libpython3.11-dev_3.11.2-6_amd64.deb ... Unpacking libpython3.11-dev:amd64 (3.11.2-6) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../46-libpython3-dev_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-dev:amd64 (3.11.2-1+b1) ... Selecting previously unselected package libpython3-all-dev:amd64. Preparing to unpack .../47-libpython3-all-dev_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-all-dev:amd64 (3.11.2-1+b1) ... Selecting previously unselected package python3-all. Preparing to unpack .../48-python3-all_3.11.2-1+b1_amd64.deb ... Unpacking python3-all (3.11.2-1+b1) ... Selecting previously unselected package python3.11-dev. Preparing to unpack .../49-python3.11-dev_3.11.2-6_amd64.deb ... Unpacking python3.11-dev (3.11.2-6) ... Selecting previously unselected package python3-dev. Preparing to unpack .../50-python3-dev_3.11.2-1+b1_amd64.deb ... Unpacking python3-dev (3.11.2-1+b1) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../51-python3-all-dev_3.11.2-1+b1_amd64.deb ... Unpacking python3-all-dev (3.11.2-1+b1) ... Selecting previously unselected package python3-attr. Preparing to unpack .../52-python3-attr_22.2.0-1_all.deb ... Unpacking python3-attr (22.2.0-1) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../53-python3-iniconfig_1.1.1-2_all.deb ... Unpacking python3-iniconfig (1.1.1-2) ... Selecting previously unselected package python3-lzo:amd64. Preparing to unpack .../54-python3-lzo_1.14-1+b3_amd64.deb ... Unpacking python3-lzo:amd64 (1.14-1+b3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../55-python3-more-itertools_8.10.0-2_all.deb ... Unpacking python3-more-itertools (8.10.0-2) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../56-python3-pkg-resources_66.1.1-1_all.deb ... Unpacking python3-pkg-resources (66.1.1-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../57-python3-numpy_1%3a1.24.2-1_amd64.deb ... Unpacking python3-numpy (1:1.24.2-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../58-python3-packaging_23.0-1_all.deb ... Unpacking python3-packaging (23.0-1) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../59-python3-pluggy_1.0.0+repack-1_all.deb ... Unpacking python3-pluggy (1.0.0+repack-1) ... Selecting previously unselected package python3-py. Preparing to unpack .../60-python3-py_1.11.0-1_all.deb ... Unpacking python3-py (1.11.0-1) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../61-python3-pytest_7.2.1-2_all.deb ... Unpacking python3-pytest (7.2.1-2) ... Selecting previously unselected package python3-pytest-cython. Preparing to unpack .../62-python3-pytest-cython_0.1.1-1_all.deb ... Unpacking python3-pytest-cython (0.1.1-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../63-python3-setuptools_66.1.1-1_all.deb ... Unpacking python3-setuptools (66.1.1-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../64-python3-six_1.16.0-4_all.deb ... Unpacking python3-six (1.16.0-4) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:amd64 (1.5.7-1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libexpat1-dev:amd64 (2.5.0-1) ... Setting up autopoint (0.21-12) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libpython3.11:amd64 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-six (1.16.0-4) ... Setting up python3-packaging (23.0-1) ... Setting up libpython3.11-dev:amd64 (3.11.2-6) ... Setting up cython3 (0.29.32-2+b1) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-lib2to3 (3.11.2-2) ... Setting up python3-lzo:amd64 (1.14-1+b3) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-2) ... Setting up dh-python (5.20230130) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (22.2.0-1) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3.11-dev (3.11.2-6) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up libpython3-all-dev:amd64 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up python3-pytest-cython (0.1.1-1) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-bx-0.9.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-bx_0.9.0-1_source.changes dpkg-buildpackage: info: source package python-bx dpkg-buildpackage: info: source version 0.9.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/python-bx-0.9.0' dh_auto_clean I: pybuild base:240: python3.11 setup.py clean running clean removing '/build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it find -name "*.pyx" | sed 's/pyx$/c/' | xargs rm -f grep -rli "Generated by Cython" lib/ | xargs -r rm rm -rf lib/bx_python.egg-info make[1]: Leaving directory '/build/python-bx-0.9.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py copying lib/psyco_full.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build creating /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx_extras copying lib/bx_extras/stats.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx_extras copying lib/bx_extras/pyparsing.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx_extras copying lib/bx_extras/pstat.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx_extras copying lib/bx_extras/lrucache.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx_extras copying lib/bx_extras/fpconst_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx_extras copying lib/bx_extras/fpconst.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx_extras copying lib/bx_extras/__init__.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx_extras creating /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx copying lib/bx/interval_index_file.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx copying lib/bx/wiggle_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx copying lib/bx/wiggle.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx copying lib/bx/seqmapping_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx copying lib/bx/seqmapping.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx copying lib/bx/interval_index_file_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx copying lib/bx/gene_reader.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx copying lib/bx/filter.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx copying lib/bx/bitset_utils.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx copying lib/bx/bitset_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx copying lib/bx/bitset_builders.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx copying lib/bx/binned_array_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx copying lib/bx/binned_array.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx copying lib/bx/__init__.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx creating /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/tabular copying lib/bx/tabular/io.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/tabular copying lib/bx/tabular/__init__.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/tabular creating /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq copying lib/bx/seq/twobit_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq copying lib/bx/seq/twobit.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq copying lib/bx/seq/seq_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq copying lib/bx/seq/seq.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq copying lib/bx/seq/qdna_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq copying lib/bx/seq/qdna.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq copying lib/bx/seq/nib_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq copying lib/bx/seq/nib.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq copying lib/bx/seq/fasta_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq copying lib/bx/seq/fasta.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq copying lib/bx/seq/core.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq copying lib/bx/seq/__init__.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq creating /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm copying lib/bx/pwm/pwm_score_maf.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm copying lib/bx/pwm/pwm_score_positions.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm copying lib/bx/pwm/pwm_score_motifs.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm copying lib/bx/pwm/position_weight_matrix.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm copying lib/bx/pwm/maf_select_motifs.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm copying lib/bx/pwm/bed_score_aligned_string.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm copying lib/bx/pwm/bed_score_aligned_pwm.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm copying lib/bx/pwm/pwm_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm copying lib/bx/pwm/__init__.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm creating /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/phylo copying lib/bx/phylo/phast_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/phylo copying lib/bx/phylo/phast.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/phylo copying lib/bx/phylo/newick_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/phylo copying lib/bx/phylo/newick.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/phylo copying lib/bx/phylo/__init__.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/phylo creating /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif copying lib/bx/motif/pwm_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif copying lib/bx/motif/pwm.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif copying lib/bx/motif/__init__.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif creating /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc copying lib/bx/misc/seeklzop_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc copying lib/bx/misc/seeklzop.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc copying lib/bx/misc/seekbzip2_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc copying lib/bx/misc/seekbzip2.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc copying lib/bx/misc/readlengths.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc copying lib/bx/misc/filecache_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc copying lib/bx/misc/filecache.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc copying lib/bx/misc/cdb_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc copying lib/bx/misc/cdb.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc copying lib/bx/misc/binary_file.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc copying lib/bx/misc/bgzf_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc copying lib/bx/misc/__init__.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc creating /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intseq copying lib/bx/intseq/__init__.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intseq creating /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals copying lib/bx/intervals/random_intervals.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals copying lib/bx/intervals/io.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals copying lib/bx/intervals/intersection_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals copying lib/bx/intervals/cluster_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals copying lib/bx/intervals/__init__.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals creating /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/cookbook copying lib/bx/cookbook/progress_bar.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/cookbook copying lib/bx/cookbook/doc_optparse.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/cookbook copying lib/bx/cookbook/attribute.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/cookbook copying lib/bx/cookbook/argparse.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/cookbook copying lib/bx/cookbook/__init__.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/cookbook creating /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/bbi copying lib/bx/bbi/bigwig_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/bbi copying lib/bx/bbi/__init__.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/bbi creating /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/arrays copying lib/bx/arrays/array_tree_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/arrays copying lib/bx/arrays/__init__.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/arrays creating /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align copying lib/bx/align/score_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align copying lib/bx/align/score.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align copying lib/bx/align/maf_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align copying lib/bx/align/maf.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align copying lib/bx/align/lav_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align copying lib/bx/align/lav.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align copying lib/bx/align/epo_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align copying lib/bx/align/epo.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align copying lib/bx/align/core.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align copying lib/bx/align/axt.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align copying lib/bx/align/__init__.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align creating /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif/logo copying lib/bx/motif/logo/__init__.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif/logo creating /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif/io copying lib/bx/motif/io/transfac_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif/io copying lib/bx/motif/io/transfac.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif/io copying lib/bx/motif/io/__init__.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif/io creating /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/subtract.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/quicksect.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/merge.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/join.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/intersect.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/find_clusters.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/coverage.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/concat.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/complement.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/base_coverage.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/__init__.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations creating /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/tools copying lib/bx/align/tools/tile.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/tools copying lib/bx/align/tools/thread.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/tools copying lib/bx/align/tools/fuse.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/tools copying lib/bx/align/tools/chop.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/tools copying lib/bx/align/tools/__init__.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/tools creating /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/sitemask copying lib/bx/align/sitemask/sitemask_tests.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/sitemask copying lib/bx/align/sitemask/quality.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/sitemask copying lib/bx/align/sitemask/cpg.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/sitemask copying lib/bx/align/sitemask/core.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/sitemask copying lib/bx/align/sitemask/__init__.py -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/sitemask copying lib/bx/motif/logo/template.ps -> /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif/logo running build_ext cythoning lib/bx/bitset.pyx to lib/bx/bitset.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.9.0/lib/bx/bitset.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/intervals/intersection.pyx to lib/bx/intervals/intersection.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.9.0/lib/bx/intervals/intersection.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/align/_core.pyx to lib/bx/align/_core.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.9.0/lib/bx/align/_core.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/seq/_nib.pyx to lib/bx/seq/_nib.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.9.0/lib/bx/seq/_nib.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/seq/_twobit.pyx to lib/bx/seq/_twobit.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.9.0/lib/bx/seq/_twobit.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/_seqmapping.pyx to lib/bx/_seqmapping.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.9.0/lib/bx/_seqmapping.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/misc/bgzf.pyx to lib/bx/misc/bgzf.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.9.0/lib/bx/misc/bgzf.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/intervals/cluster.pyx to lib/bx/intervals/cluster.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.9.0/lib/bx/intervals/cluster.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/pwm/_position_weight_matrix.pyx to lib/bx/pwm/_position_weight_matrix.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.9.0/lib/bx/pwm/_position_weight_matrix.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/motif/_pwm.pyx to lib/bx/motif/_pwm.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.9.0/lib/bx/motif/_pwm.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/arrays/array_tree.pyx to lib/bx/arrays/array_tree.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.9.0/lib/bx/arrays/array_tree.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/bbi/bpt_file.pyx to lib/bx/bbi/bpt_file.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.9.0/lib/bx/bbi/bpt_file.pxd tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/bbi/cirtree_file.pyx to lib/bx/bbi/cirtree_file.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.9.0/lib/bx/bbi/cirtree_file.pxd tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/bbi/bbi_file.pyx to lib/bx/bbi/bbi_file.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.9.0/lib/bx/bbi/bbi_file.pxd tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/bbi/bigwig_file.pyx to lib/bx/bbi/bigwig_file.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.9.0/lib/bx/bbi/bigwig_file.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/bbi/bigbed_file.pyx to lib/bx/bbi/bigbed_file.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.9.0/lib/bx/bbi/bigbed_file.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/align/_epo.pyx to lib/bx/align/_epo.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.9.0/lib/bx/align/_epo.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/arrays/bed.pyx to lib/bx/arrays/bed.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.9.0/lib/bx/arrays/bed.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/arrays/wiggle.pyx to lib/bx/arrays/wiggle.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.9.0/lib/bx/arrays/wiggle.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: lib/bx/arrays/wiggle.pyx:94:20: Unreachable code cythoning lib/bx/align/sitemask/_cpg.pyx to lib/bx/align/sitemask/_cpg.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.9.0/lib/bx/align/sitemask/_cpg.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/intseq/ngramcount.pyx to lib/bx/intseq/ngramcount.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.9.0/lib/bx/intseq/ngramcount.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/misc/_seekbzip2.pyx to lib/bx/misc/_seekbzip2.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.9.0/lib/bx/misc/_seekbzip2.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'bx.bitset' extension creating build creating build/temp.linux-x86_64-cpython-311 creating build/temp.linux-x86_64-cpython-311/lib creating build/temp.linux-x86_64-cpython-311/lib/bx creating build/temp.linux-x86_64-cpython-311/src creating build/temp.linux-x86_64-cpython-311/src/kent x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.11 -c lib/bx/bitset.c -o build/temp.linux-x86_64-cpython-311/lib/bx/bitset.o x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.11 -c src/binBits.c -o build/temp.linux-x86_64-cpython-311/src/binBits.o x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.11 -c src/kent/bits.c -o build/temp.linux-x86_64-cpython-311/src/kent/bits.o src/kent/bits.c:9:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 9 | static char const rcsid[] = "$Id: bits.c,v 1.20 2008/03/25 16:32:31 angie Exp $"; | ^~~~~ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.11 -c src/kent/common.c -o build/temp.linux-x86_64-cpython-311/src/kent/common.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/lib/bx/bitset.o build/temp.linux-x86_64-cpython-311/src/binBits.o build/temp.linux-x86_64-cpython-311/src/kent/bits.o build/temp.linux-x86_64-cpython-311/src/kent/common.o -L/usr/lib/x86_64-linux-gnu -o /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/bitset.cpython-311-x86_64-linux-gnu.so building 'bx.intervals.intersection' extension creating build/temp.linux-x86_64-cpython-311/lib/bx/intervals x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c lib/bx/intervals/intersection.c -o build/temp.linux-x86_64-cpython-311/lib/bx/intervals/intersection.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/lib/bx/intervals/intersection.o -L/usr/lib/x86_64-linux-gnu -o /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/intersection.cpython-311-x86_64-linux-gnu.so building 'bx.align._core' extension creating build/temp.linux-x86_64-cpython-311/lib/bx/align x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c lib/bx/align/_core.c -o build/temp.linux-x86_64-cpython-311/lib/bx/align/_core.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/lib/bx/align/_core.o -L/usr/lib/x86_64-linux-gnu -o /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/_core.cpython-311-x86_64-linux-gnu.so building 'bx.seq._nib' extension creating build/temp.linux-x86_64-cpython-311/lib/bx/seq x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c lib/bx/seq/_nib.c -o build/temp.linux-x86_64-cpython-311/lib/bx/seq/_nib.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/lib/bx/seq/_nib.o -L/usr/lib/x86_64-linux-gnu -o /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/_nib.cpython-311-x86_64-linux-gnu.so building 'bx.seq._twobit' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c lib/bx/seq/_twobit.c -o build/temp.linux-x86_64-cpython-311/lib/bx/seq/_twobit.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/lib/bx/seq/_twobit.o -L/usr/lib/x86_64-linux-gnu -o /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/_twobit.cpython-311-x86_64-linux-gnu.so building 'bx._seqmapping' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c lib/bx/_seqmapping.c -o build/temp.linux-x86_64-cpython-311/lib/bx/_seqmapping.o lib/bx/_seqmapping.c: In function ‘__pyx_pf_2bx_11_seqmapping_21CharToIntArrayMapping_6translate’: lib/bx/_seqmapping.c:1947:3: warning: ‘PyObject_AsWriteBuffer’ is deprecated [-Wdeprecated-declarations] 1947 | __pyx_t_1 = PyObject_AsWriteBuffer(__pyx_v_rval, ((void **)(&__pyx_v_t_buf)), (&__pyx_v_t_len)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 54, __pyx_L1_error) | ^~~~~~~~~ In file included from /usr/include/python3.11/Python.h:100, from lib/bx/_seqmapping.c:6: /usr/include/python3.11/abstract.h:354:17: note: declared here 354 | PyAPI_FUNC(int) PyObject_AsWriteBuffer(PyObject *obj, | ^~~~~~~~~~~~~~~~~~~~~~ lib/bx/_seqmapping.c: In function ‘__pyx_pf_2bx_11_seqmapping_21CharToIntArrayMapping_8translate_list’: lib/bx/_seqmapping.c:2150:3: warning: ‘PyObject_AsWriteBuffer’ is deprecated [-Wdeprecated-declarations] 2150 | __pyx_t_7 = PyObject_AsWriteBuffer(__pyx_v_rval, ((void **)(&__pyx_v_t_buf)), (&__pyx_v_t_len)); if (unlikely(__pyx_t_7 == ((int)-1))) __PYX_ERR(0, 77, __pyx_L1_error) | ^~~~~~~~~ /usr/include/python3.11/abstract.h:354:17: note: declared here 354 | PyAPI_FUNC(int) PyObject_AsWriteBuffer(PyObject *obj, | ^~~~~~~~~~~~~~~~~~~~~~ lib/bx/_seqmapping.c: In function ‘__pyx_pf_2bx_11_seqmapping_15IntToIntMapping_6translate’: lib/bx/_seqmapping.c:3225:3: warning: ‘PyObject_AsReadBuffer’ is deprecated [-Wdeprecated-declarations] 3225 | __pyx_t_1 = PyObject_AsReadBuffer(__pyx_v_src, ((void const **)(&__pyx_v_s_buf)), (&__pyx_v_s_len)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 134, __pyx_L1_error) | ^~~~~~~~~ /usr/include/python3.11/abstract.h:343:17: note: declared here 343 | PyAPI_FUNC(int) PyObject_AsReadBuffer(PyObject *obj, | ^~~~~~~~~~~~~~~~~~~~~ lib/bx/_seqmapping.c:3326:3: warning: ‘PyObject_AsWriteBuffer’ is deprecated [-Wdeprecated-declarations] 3326 | __pyx_t_1 = PyObject_AsWriteBuffer(__pyx_v_rval, ((void **)(&__pyx_v_t_buf)), (&__pyx_v_t_len)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 139, __pyx_L1_error) | ^~~~~~~~~ /usr/include/python3.11/abstract.h:354:17: note: declared here 354 | PyAPI_FUNC(int) PyObject_AsWriteBuffer(PyObject *obj, | ^~~~~~~~~~~~~~~~~~~~~~ In function ‘__pyx_pf_2bx_11_seqmapping_15IntToIntMapping___cinit__’, inlined from ‘__pyx_pw_2bx_11_seqmapping_15IntToIntMapping_1__cinit__’ at lib/bx/_seqmapping.c:2860:13, inlined from ‘__pyx_tp_new_2bx_11_seqmapping_IntToIntMapping’ at lib/bx/_seqmapping.c:5139:7: lib/bx/_seqmapping.c:2894:33: warning: argument 1 value ‘18446744073709551612’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 2894 | __pyx_v_self->table = ((int *)malloc((__pyx_v_in_size * (sizeof(int))))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/python3.11/Python.h:23: /usr/include/stdlib.h: In function ‘__pyx_tp_new_2bx_11_seqmapping_IntToIntMapping’: /usr/include/stdlib.h:553:14: note: in a call to allocation function ‘malloc’ declared here 553 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/lib/bx/_seqmapping.o -L/usr/lib/x86_64-linux-gnu -o /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/_seqmapping.cpython-311-x86_64-linux-gnu.so building 'bx.misc.bgzf' extension creating build/temp.linux-x86_64-cpython-311/lib/bx/misc creating build/temp.linux-x86_64-cpython-311/src/samtools x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/samtools -I/usr/include/python3.11 -c lib/bx/misc/bgzf.c -o build/temp.linux-x86_64-cpython-311/lib/bx/misc/bgzf.o x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/samtools -I/usr/include/python3.11 -c src/samtools/bgzf.c -o build/temp.linux-x86_64-cpython-311/src/samtools/bgzf.o src/samtools/bgzf.c: In function ‘cache_block’: src/samtools/bgzf.c:422:47: warning: comparison of integer expressions of different signedness: ‘khint_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 422 | if ((kh_size(h) + 1) * MAX_BLOCK_SIZE > fp->cache_size) { | ^ src/samtools/bgzf.c: In function ‘read_block’: src/samtools/bgzf.c:462:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 462 | if (count != sizeof(header)) { | ^~ src/samtools/bgzf.c: In function ‘bgzf_close’: src/samtools/bgzf.c:603:29: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 603 | int count, block_length = deflate_block(fp, 0); | ^~~~~ src/samtools/bgzf.c: In function ‘bgzf_check_EOF’: src/samtools/bgzf.c:662:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 662 | fread(buf, 1, 28, fp->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/lib/bx/misc/bgzf.o build/temp.linux-x86_64-cpython-311/src/samtools/bgzf.o -L/usr/lib/x86_64-linux-gnu -lz -o /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/bgzf.cpython-311-x86_64-linux-gnu.so building 'bx.intervals.cluster' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.11 -c lib/bx/intervals/cluster.c -o build/temp.linux-x86_64-cpython-311/lib/bx/intervals/cluster.o x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.11 -c src/cluster.c -o build/temp.linux-x86_64-cpython-311/src/cluster.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/lib/bx/intervals/cluster.o build/temp.linux-x86_64-cpython-311/src/cluster.o -L/usr/lib/x86_64-linux-gnu -o /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/cluster.cpython-311-x86_64-linux-gnu.so building 'bx.pwm._position_weight_matrix' extension creating build/temp.linux-x86_64-cpython-311/lib/bx/pwm x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.11 -c lib/bx/pwm/_position_weight_matrix.c -o build/temp.linux-x86_64-cpython-311/lib/bx/pwm/_position_weight_matrix.o x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.11 -c src/pwm_utils.c -o build/temp.linux-x86_64-cpython-311/src/pwm_utils.o src/pwm_utils.c: In function ‘main’: src/pwm_utils.c:11:27: warning: implicit declaration of function ‘strlen’ [-Wimplicit-function-declaration] 11 | int string_size = strlen(argv[1]); | ^~~~~~ src/pwm_utils.c:5:1: note: include ‘’ or provide a declaration of ‘strlen’ 4 | #include +++ |+#include 5 | src/pwm_utils.c:11:27: warning: incompatible implicit declaration of built-in function ‘strlen’ [-Wbuiltin-declaration-mismatch] 11 | int string_size = strlen(argv[1]); | ^~~~~~ src/pwm_utils.c:11:27: note: include ‘’ or provide a declaration of ‘strlen’ src/pwm_utils.c:12:29: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 12 | if (strlen(argv[2]) != string_size) { | ^~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/lib/bx/pwm/_position_weight_matrix.o build/temp.linux-x86_64-cpython-311/src/pwm_utils.o -L/usr/lib/x86_64-linux-gnu -o /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm/_position_weight_matrix.cpython-311-x86_64-linux-gnu.so building 'bx.motif._pwm' extension creating build/temp.linux-x86_64-cpython-311/lib/bx/motif x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c lib/bx/motif/_pwm.c -o build/temp.linux-x86_64-cpython-311/lib/bx/motif/_pwm.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from lib/bx/motif/_pwm.c:744: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21: /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1477:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 1477 | _import_array(void) | ^~~~~~~~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/lib/bx/motif/_pwm.o -L/usr/lib/x86_64-linux-gnu -o /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif/_pwm.cpython-311-x86_64-linux-gnu.so building 'bx.arrays.array_tree' extension creating build/temp.linux-x86_64-cpython-311/lib/bx/arrays x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c lib/bx/arrays/array_tree.c -o build/temp.linux-x86_64-cpython-311/lib/bx/arrays/array_tree.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from lib/bx/arrays/array_tree.c:746: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/lib/bx/arrays/array_tree.o -L/usr/lib/x86_64-linux-gnu -o /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/arrays/array_tree.cpython-311-x86_64-linux-gnu.so building 'bx.bbi.bpt_file' extension creating build/temp.linux-x86_64-cpython-311/lib/bx/bbi x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c lib/bx/bbi/bpt_file.c -o build/temp.linux-x86_64-cpython-311/lib/bx/bbi/bpt_file.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/lib/bx/bbi/bpt_file.o -L/usr/lib/x86_64-linux-gnu -o /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/bbi/bpt_file.cpython-311-x86_64-linux-gnu.so building 'bx.bbi.cirtree_file' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c lib/bx/bbi/cirtree_file.c -o build/temp.linux-x86_64-cpython-311/lib/bx/bbi/cirtree_file.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/lib/bx/bbi/cirtree_file.o -L/usr/lib/x86_64-linux-gnu -o /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/bbi/cirtree_file.cpython-311-x86_64-linux-gnu.so building 'bx.bbi.bbi_file' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c lib/bx/bbi/bbi_file.c -o build/temp.linux-x86_64-cpython-311/lib/bx/bbi/bbi_file.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from lib/bx/bbi/bbi_file.c:746: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/lib/bx/bbi/bbi_file.o -L/usr/lib/x86_64-linux-gnu -o /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/bbi/bbi_file.cpython-311-x86_64-linux-gnu.so building 'bx.bbi.bigwig_file' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c lib/bx/bbi/bigwig_file.c -o build/temp.linux-x86_64-cpython-311/lib/bx/bbi/bigwig_file.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from lib/bx/bbi/bigwig_file.c:746: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_18BigWigBlockHandler_handle_block’: lib/bx/bbi/bigwig_file.c:3446:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare] 3446 | __pyx_t_11 = ((__pyx_v_s < __pyx_v_self->start) != 0); | ^ lib/bx/bbi/bigwig_file.c:3475:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare] 3475 | __pyx_t_11 = ((__pyx_v_e > __pyx_v_self->end) != 0); | ^ lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_29ArrayAccumulatingBlockHandler_handle_interval_value’: lib/bx/bbi/bigwig_file.c:5399:76: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare] 5399 | for (__pyx_v_i = (__pyx_v_s - __pyx_v_self->__pyx_base.start); __pyx_v_i < __pyx_t_2; __pyx_v_i++) { | ^ lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_18BigWigBlockHandler_handle_block’: lib/bx/bbi/bigwig_file.c:3532:18: warning: ‘__pyx_v_val’ may be used uninitialized [-Wmaybe-uninitialized] 3532 | __pyx_t_2 = ((struct __pyx_vtabstruct_2bx_3bbi_11bigwig_file_BigWigBlockHandler *)__pyx_v_self->__pyx_base.__pyx_vtab)->handle_interval_value(__pyx_v_self, __pyx_v_s, __pyx_v_e, __pyx_v_val); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 81, __pyx_L1_error) | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/bx/bbi/bigwig_file.c:2887:9: note: ‘__pyx_v_val’ was declared here 2887 | float __pyx_v_val; | ^~~~~~~~~~~ lib/bx/bbi/bigwig_file.c:3475:51: warning: ‘__pyx_v_e’ may be used uninitialized [-Wmaybe-uninitialized] 3475 | __pyx_t_11 = ((__pyx_v_e > __pyx_v_self->end) != 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ lib/bx/bbi/bigwig_file.c:2886:7: note: ‘__pyx_v_e’ was declared here 2886 | int __pyx_v_e; | ^~~~~~~~~ lib/bx/bbi/bigwig_file.c:3446:53: warning: ‘__pyx_v_s’ may be used uninitialized [-Wmaybe-uninitialized] 3446 | __pyx_t_11 = ((__pyx_v_s < __pyx_v_self->start) != 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ lib/bx/bbi/bigwig_file.c:2885:7: note: ‘__pyx_v_s’ was declared here 2885 | int __pyx_v_s; | ^~~~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/lib/bx/bbi/bigwig_file.o -L/usr/lib/x86_64-linux-gnu -o /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/bbi/bigwig_file.cpython-311-x86_64-linux-gnu.so building 'bx.bbi.bigbed_file' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c lib/bx/bbi/bigbed_file.c -o build/temp.linux-x86_64-cpython-311/lib/bx/bbi/bigbed_file.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from lib/bx/bbi/bigbed_file.c:746: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/lib/bx/bbi/bigbed_file.o -L/usr/lib/x86_64-linux-gnu -o /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/bbi/bigbed_file.cpython-311-x86_64-linux-gnu.so building 'bx.align._epo' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c lib/bx/align/_epo.c -o build/temp.linux-x86_64-cpython-311/lib/bx/align/_epo.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from lib/bx/align/_epo.c:746: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ lib/bx/align/_epo.c: In function ‘__pyx_f_2bx_5align_4_epo_bed_union’: lib/bx/align/_epo.c:5543:237: warning: comparison of integer expressions of different signedness: ‘__pyx_t_5numpy_uint64_t’ {aka ‘long unsigned int’} and ‘Py_ssize_t’ {aka ‘long int’} [-Wsign-compare] 5543 | __pyx_t_4 = (((*__Pyx_BufPtrStrided2d(__pyx_t_5numpy_uint64_t *, __pyx_pybuffernd_elements.rcbuffer->pybuffer.buf, __pyx_t_11, __pyx_pybuffernd_elements.diminfo[0].strides, __pyx_t_12, __pyx_pybuffernd_elements.diminfo[1].strides)) <= __pyx_v_cen) != 0); | ^~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/lib/bx/align/_epo.o -L/usr/lib/x86_64-linux-gnu -o /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/_epo.cpython-311-x86_64-linux-gnu.so building 'bx.arrays.bed' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c lib/bx/arrays/bed.c -o build/temp.linux-x86_64-cpython-311/lib/bx/arrays/bed.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/lib/bx/arrays/bed.o -L/usr/lib/x86_64-linux-gnu -o /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/arrays/bed.cpython-311-x86_64-linux-gnu.so building 'bx.arrays.wiggle' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c lib/bx/arrays/wiggle.c -o build/temp.linux-x86_64-cpython-311/lib/bx/arrays/wiggle.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/lib/bx/arrays/wiggle.o -L/usr/lib/x86_64-linux-gnu -o /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/arrays/wiggle.cpython-311-x86_64-linux-gnu.so building 'bx.align.sitemask._cpg' extension creating build/temp.linux-x86_64-cpython-311/lib/bx/align/sitemask x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c lib/bx/align/sitemask/_cpg.c -o build/temp.linux-x86_64-cpython-311/lib/bx/align/sitemask/_cpg.o x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c lib/bx/align/sitemask/find_cpg.c -o build/temp.linux-x86_64-cpython-311/lib/bx/align/sitemask/find_cpg.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/lib/bx/align/sitemask/_cpg.o build/temp.linux-x86_64-cpython-311/lib/bx/align/sitemask/find_cpg.o -L/usr/lib/x86_64-linux-gnu -o /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/sitemask/_cpg.cpython-311-x86_64-linux-gnu.so building 'bx.intseq.ngramcount' extension creating build/temp.linux-x86_64-cpython-311/lib/bx/intseq x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.11 -c lib/bx/intseq/ngramcount.c -o build/temp.linux-x86_64-cpython-311/lib/bx/intseq/ngramcount.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/lib/bx/intseq/ngramcount.o -L/usr/lib/x86_64-linux-gnu -o /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intseq/ngramcount.cpython-311-x86_64-linux-gnu.so building 'bx.misc._seekbzip2' extension creating build/temp.linux-x86_64-cpython-311/src/bunzip x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/bunzip -I/usr/include/python3.11 -c lib/bx/misc/_seekbzip2.c -o build/temp.linux-x86_64-cpython-311/lib/bx/misc/_seekbzip2.o x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/bunzip -I/usr/include/python3.11 -c src/bunzip/micro-bunzip.c -o build/temp.linux-x86_64-cpython-311/src/bunzip/micro-bunzip.o src/bunzip/micro-bunzip.c: In function ‘get_bits’: src/bunzip/micro-bunzip.c:99:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘char’ [-Wsign-compare] 99 | while (bd->inbufBitCount dbufSize) return RETVAL_DATA_ERROR; | ^ src/bunzip/micro-bunzip.c:298:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 298 | while (bd->inbufBitCountmaxLen) { | ^ src/bunzip/micro-bunzip.c:400:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 400 | if(origPtr>=dbufCount) return RETVAL_DATA_ERROR; | ^~ src/bunzip/micro-bunzip.c: In function ‘start_bunzip’: src/bunzip/micro-bunzip.c:629:26: warning: pointer targets in assignment from ‘char *’ to ‘unsigned char *’ differ in signedness [-Wpointer-sign] 629 | bd->inbuf=inbuf; | ^ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-bx-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/lib/bx/misc/_seekbzip2.o build/temp.linux-x86_64-cpython-311/src/bunzip/micro-bunzip.o -L/usr/lib/x86_64-linux-gnu -o /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/_seekbzip2.cpython-311-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.11 copying and adjusting scripts/wiggle_to_simple.py -> build/scripts-3.11 copying and adjusting scripts/wiggle_to_chr_binned_array.py -> build/scripts-3.11 copying and adjusting scripts/wiggle_to_binned_array.py -> build/scripts-3.11 copying and adjusting scripts/wiggle_to_array_tree.py -> build/scripts-3.11 copying and adjusting scripts/ucsc_gene_table_to_intervals.py -> build/scripts-3.11 copying and adjusting scripts/tfloc_summary.py -> build/scripts-3.11 copying and adjusting scripts/table_filter.py -> build/scripts-3.11 copying and adjusting scripts/table_add_column.py -> build/scripts-3.11 copying and adjusting scripts/random_lines.py -> build/scripts-3.11 copying and adjusting scripts/qv_to_bqv.py -> build/scripts-3.11 copying and adjusting scripts/pretty_table.py -> build/scripts-3.11 copying and adjusting scripts/prefix_lines.py -> build/scripts-3.11 copying and adjusting scripts/out_to_chain.py -> build/scripts-3.11 copying and adjusting scripts/one_field_per_line.py -> build/scripts-3.11 copying and adjusting scripts/nib_length.py -> build/scripts-3.11 copying and adjusting scripts/nib_intervals_to_fasta.py -> build/scripts-3.11 copying and adjusting scripts/nib_chrom_intervals_to_fasta.py -> build/scripts-3.11 copying and adjusting scripts/mask_quality.py -> build/scripts-3.11 copying and adjusting scripts/maf_word_frequency.py -> build/scripts-3.11 copying and adjusting scripts/maf_truncate.py -> build/scripts-3.11 copying and adjusting scripts/maf_translate_chars.py -> build/scripts-3.11 copying and adjusting scripts/maf_to_int_seqs.py -> build/scripts-3.11 copying and adjusting scripts/maf_to_fasta.py -> build/scripts-3.11 copying and adjusting scripts/maf_to_concat_fasta.py -> build/scripts-3.11 copying and adjusting scripts/maf_to_axt.py -> build/scripts-3.11 copying and adjusting scripts/maf_tile_2bit.py -> build/scripts-3.11 copying and adjusting scripts/maf_tile_2.py -> build/scripts-3.11 copying and adjusting scripts/maf_tile.py -> build/scripts-3.11 copying and adjusting scripts/maf_thread_for_species.py -> build/scripts-3.11 copying and adjusting scripts/maf_split_by_src.py -> build/scripts-3.11 copying and adjusting scripts/maf_species_in_all_files.py -> build/scripts-3.11 copying and adjusting scripts/maf_shuffle_columns.py -> build/scripts-3.11 copying and adjusting scripts/maf_select.py -> build/scripts-3.11 copying and adjusting scripts/maf_region_coverage_by_src.py -> build/scripts-3.11 copying and adjusting scripts/maf_randomize.py -> build/scripts-3.11 copying and adjusting scripts/maf_print_scores.py -> build/scripts-3.11 copying and adjusting scripts/maf_print_chroms.py -> build/scripts-3.11 copying and adjusting scripts/maf_percent_identity.py -> build/scripts-3.11 copying and adjusting scripts/maf_percent_columns_matching.py -> build/scripts-3.11 copying and adjusting scripts/maf_mean_length_ungapped_piece.py -> build/scripts-3.11 copying and adjusting scripts/maf_mask_cpg.py -> build/scripts-3.11 copying and adjusting scripts/maf_mapping_word_frequency.py -> build/scripts-3.11 copying and adjusting scripts/maf_limit_to_species.py -> build/scripts-3.11 copying and adjusting scripts/maf_interval_alignibility.py -> build/scripts-3.11 copying and adjusting scripts/maf_gc_content.py -> build/scripts-3.11 copying and adjusting scripts/maf_gap_frequency.py -> build/scripts-3.11 copying and adjusting scripts/maf_filter_max_wc.py -> build/scripts-3.11 copying and adjusting scripts/maf_filter.py -> build/scripts-3.11 copying and adjusting scripts/maf_extract_ranges_indexed.py -> build/scripts-3.11 copying and adjusting scripts/maf_extract_ranges.py -> build/scripts-3.11 copying and adjusting scripts/maf_extract_chrom_ranges.py -> build/scripts-3.11 copying and adjusting scripts/maf_drop_overlapping.py -> build/scripts-3.11 copying and adjusting scripts/maf_div_sites.py -> build/scripts-3.11 copying and adjusting scripts/maf_covered_regions.py -> build/scripts-3.11 copying and adjusting scripts/maf_covered_ranges.py -> build/scripts-3.11 copying and adjusting scripts/maf_count.py -> build/scripts-3.11 copying and adjusting scripts/maf_col_counts_all.py -> build/scripts-3.11 copying and adjusting scripts/maf_col_counts.py -> build/scripts-3.11 copying and adjusting scripts/maf_chunk.py -> build/scripts-3.11 copying and adjusting scripts/maf_chop.py -> build/scripts-3.11 copying and adjusting scripts/maf_build_index.py -> build/scripts-3.11 copying and adjusting scripts/mMK_bitset.py -> build/scripts-3.11 copying and adjusting scripts/lzop_build_offset_table.py -> build/scripts-3.11 copying and adjusting scripts/line_select.py -> build/scripts-3.11 copying and adjusting scripts/lav_to_maf.py -> build/scripts-3.11 copying and adjusting scripts/lav_to_axt.py -> build/scripts-3.11 copying and adjusting scripts/interval_join.py -> build/scripts-3.11 copying and adjusting scripts/interval_count_intersections.py -> build/scripts-3.11 copying and adjusting scripts/int_seqs_to_char_strings.py -> build/scripts-3.11 copying and adjusting scripts/get_scores_in_intervals.py -> build/scripts-3.11 copying and adjusting scripts/find_in_sorted_file.py -> build/scripts-3.11 copying and adjusting scripts/div_snp_table_chr.py -> build/scripts-3.11 copying and adjusting scripts/bnMapper.py -> build/scripts-3.11 copying and adjusting scripts/bed_subtract_basewise.py -> build/scripts-3.11 copying and adjusting scripts/bed_rand_intersect.py -> build/scripts-3.11 copying and adjusting scripts/bed_merge_overlapping.py -> build/scripts-3.11 copying and adjusting scripts/bed_intersect_basewise.py -> build/scripts-3.11 copying and adjusting scripts/bed_intersect.py -> build/scripts-3.11 copying and adjusting scripts/bed_extend_to.py -> build/scripts-3.11 copying and adjusting scripts/bed_diff_basewise_summary.py -> build/scripts-3.11 copying and adjusting scripts/bed_coverage_by_interval.py -> build/scripts-3.11 copying and adjusting scripts/bed_coverage.py -> build/scripts-3.11 copying and adjusting scripts/bed_count_overlapping.py -> build/scripts-3.11 copying and adjusting scripts/bed_count_by_interval.py -> build/scripts-3.11 copying and adjusting scripts/bed_complement.py -> build/scripts-3.11 copying and adjusting scripts/bed_build_windows.py -> build/scripts-3.11 copying and adjusting scripts/bed_bigwig_profile.py -> build/scripts-3.11 copying and adjusting scripts/axt_to_maf.py -> build/scripts-3.11 copying and adjusting scripts/axt_to_lav.py -> build/scripts-3.11 copying and adjusting scripts/axt_to_fasta.py -> build/scripts-3.11 copying and adjusting scripts/axt_extract_ranges.py -> build/scripts-3.11 copying and adjusting scripts/align_print_template.py -> build/scripts-3.11 copying and adjusting scripts/aggregate_scores_in_intervals.py -> build/scripts-3.11 copying and adjusting scripts/gene_fourfold_sites.py -> build/scripts-3.11 changing mode of build/scripts-3.11/wiggle_to_simple.py from 644 to 755 changing mode of build/scripts-3.11/wiggle_to_chr_binned_array.py from 644 to 755 changing mode of build/scripts-3.11/wiggle_to_binned_array.py from 644 to 755 changing mode of build/scripts-3.11/wiggle_to_array_tree.py from 644 to 755 changing mode of build/scripts-3.11/ucsc_gene_table_to_intervals.py from 644 to 755 changing mode of build/scripts-3.11/tfloc_summary.py from 644 to 755 changing mode of build/scripts-3.11/table_filter.py from 644 to 755 changing mode of build/scripts-3.11/table_add_column.py from 644 to 755 changing mode of build/scripts-3.11/random_lines.py from 644 to 755 changing mode of build/scripts-3.11/qv_to_bqv.py from 644 to 755 changing mode of build/scripts-3.11/pretty_table.py from 644 to 755 changing mode of build/scripts-3.11/prefix_lines.py from 644 to 755 changing mode of build/scripts-3.11/out_to_chain.py from 644 to 755 changing mode of build/scripts-3.11/one_field_per_line.py from 644 to 755 changing mode of build/scripts-3.11/nib_length.py from 644 to 755 changing mode of build/scripts-3.11/nib_intervals_to_fasta.py from 644 to 755 changing mode of build/scripts-3.11/nib_chrom_intervals_to_fasta.py from 644 to 755 changing mode of build/scripts-3.11/mask_quality.py from 644 to 755 changing mode of build/scripts-3.11/maf_word_frequency.py from 644 to 755 changing mode of build/scripts-3.11/maf_truncate.py from 644 to 755 changing mode of build/scripts-3.11/maf_translate_chars.py from 644 to 755 changing mode of build/scripts-3.11/maf_to_int_seqs.py from 644 to 755 changing mode of build/scripts-3.11/maf_to_fasta.py from 644 to 755 changing mode of build/scripts-3.11/maf_to_concat_fasta.py from 644 to 755 changing mode of build/scripts-3.11/maf_to_axt.py from 644 to 755 changing mode of build/scripts-3.11/maf_tile_2bit.py from 644 to 755 changing mode of build/scripts-3.11/maf_tile_2.py from 644 to 755 changing mode of build/scripts-3.11/maf_tile.py from 644 to 755 changing mode of build/scripts-3.11/maf_thread_for_species.py from 644 to 755 changing mode of build/scripts-3.11/maf_split_by_src.py from 644 to 755 changing mode of build/scripts-3.11/maf_species_in_all_files.py from 644 to 755 changing mode of build/scripts-3.11/maf_shuffle_columns.py from 644 to 755 changing mode of build/scripts-3.11/maf_select.py from 644 to 755 changing mode of build/scripts-3.11/maf_region_coverage_by_src.py from 644 to 755 changing mode of build/scripts-3.11/maf_randomize.py from 644 to 755 changing mode of build/scripts-3.11/maf_print_scores.py from 644 to 755 changing mode of build/scripts-3.11/maf_print_chroms.py from 644 to 755 changing mode of build/scripts-3.11/maf_percent_identity.py from 644 to 755 changing mode of build/scripts-3.11/maf_percent_columns_matching.py from 644 to 755 changing mode of build/scripts-3.11/maf_mean_length_ungapped_piece.py from 644 to 755 changing mode of build/scripts-3.11/maf_mask_cpg.py from 644 to 755 changing mode of build/scripts-3.11/maf_mapping_word_frequency.py from 644 to 755 changing mode of build/scripts-3.11/maf_limit_to_species.py from 644 to 755 changing mode of build/scripts-3.11/maf_interval_alignibility.py from 644 to 755 changing mode of build/scripts-3.11/maf_gc_content.py from 644 to 755 changing mode of build/scripts-3.11/maf_gap_frequency.py from 644 to 755 changing mode of build/scripts-3.11/maf_filter_max_wc.py from 644 to 755 changing mode of build/scripts-3.11/maf_filter.py from 644 to 755 changing mode of build/scripts-3.11/maf_extract_ranges_indexed.py from 644 to 755 changing mode of build/scripts-3.11/maf_extract_ranges.py from 644 to 755 changing mode of build/scripts-3.11/maf_extract_chrom_ranges.py from 644 to 755 changing mode of build/scripts-3.11/maf_drop_overlapping.py from 644 to 755 changing mode of build/scripts-3.11/maf_div_sites.py from 644 to 755 changing mode of build/scripts-3.11/maf_covered_regions.py from 644 to 755 changing mode of build/scripts-3.11/maf_covered_ranges.py from 644 to 755 changing mode of build/scripts-3.11/maf_count.py from 644 to 755 changing mode of build/scripts-3.11/maf_col_counts_all.py from 644 to 755 changing mode of build/scripts-3.11/maf_col_counts.py from 644 to 755 changing mode of build/scripts-3.11/maf_chunk.py from 644 to 755 changing mode of build/scripts-3.11/maf_chop.py from 644 to 755 changing mode of build/scripts-3.11/maf_build_index.py from 644 to 755 changing mode of build/scripts-3.11/mMK_bitset.py from 644 to 755 changing mode of build/scripts-3.11/lzop_build_offset_table.py from 644 to 755 changing mode of build/scripts-3.11/line_select.py from 644 to 755 changing mode of build/scripts-3.11/lav_to_maf.py from 644 to 755 changing mode of build/scripts-3.11/lav_to_axt.py from 644 to 755 changing mode of build/scripts-3.11/interval_join.py from 644 to 755 changing mode of build/scripts-3.11/interval_count_intersections.py from 644 to 755 changing mode of build/scripts-3.11/int_seqs_to_char_strings.py from 644 to 755 changing mode of build/scripts-3.11/get_scores_in_intervals.py from 644 to 755 changing mode of build/scripts-3.11/find_in_sorted_file.py from 644 to 755 changing mode of build/scripts-3.11/div_snp_table_chr.py from 644 to 755 changing mode of build/scripts-3.11/bnMapper.py from 644 to 755 changing mode of build/scripts-3.11/bed_subtract_basewise.py from 644 to 755 changing mode of build/scripts-3.11/bed_rand_intersect.py from 644 to 755 changing mode of build/scripts-3.11/bed_merge_overlapping.py from 644 to 755 changing mode of build/scripts-3.11/bed_intersect_basewise.py from 644 to 755 changing mode of build/scripts-3.11/bed_intersect.py from 644 to 755 changing mode of build/scripts-3.11/bed_extend_to.py from 644 to 755 changing mode of build/scripts-3.11/bed_diff_basewise_summary.py from 644 to 755 changing mode of build/scripts-3.11/bed_coverage_by_interval.py from 644 to 755 changing mode of build/scripts-3.11/bed_coverage.py from 644 to 755 changing mode of build/scripts-3.11/bed_count_overlapping.py from 644 to 755 changing mode of build/scripts-3.11/bed_count_by_interval.py from 644 to 755 changing mode of build/scripts-3.11/bed_complement.py from 644 to 755 changing mode of build/scripts-3.11/bed_build_windows.py from 644 to 755 changing mode of build/scripts-3.11/bed_bigwig_profile.py from 644 to 755 changing mode of build/scripts-3.11/axt_to_maf.py from 644 to 755 changing mode of build/scripts-3.11/axt_to_lav.py from 644 to 755 changing mode of build/scripts-3.11/axt_to_fasta.py from 644 to 755 changing mode of build/scripts-3.11/axt_extract_ranges.py from 644 to 755 changing mode of build/scripts-3.11/align_print_template.py from 644 to 755 changing mode of build/scripts-3.11/aggregate_scores_in_intervals.py from 644 to 755 changing mode of build/scripts-3.11/gene_fourfold_sites.py from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:307: cp -r /build/python-bx-0.9.0/test_data /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/ I: pybuild base:240: cd /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build; python3.11 -m pytest ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack rootdir: /build/python-bx-0.9.0, configfile: pytest.ini plugins: cython-0.1.1 collected 139 items bx/binned_array_tests.py .... [ 2%] bx/bitset_tests.py .................. [ 15%] bx/interval_index_file_tests.py ... [ 17%] bx/wiggle_tests.py .. [ 19%] bx/align/epo_tests.py ..... [ 23%] bx/align/lav_tests.py . [ 23%] bx/align/maf_tests.py ........ [ 29%] bx/align/score_tests.py ..... [ 33%] bx/align/sitemask/sitemask_tests.py ... [ 35%] bx/align/tools/fuse.py . [ 35%] bx/align/tools/thread.py . [ 36%] bx/arrays/array_tree_tests.py ...... [ 41%] bx/bbi/bigwig_tests.py ........................... [ 60%] bx/intervals/cluster_tests.py ............. [ 69%] bx/intervals/intersection_tests.py ............. [ 79%] bx/intervals/io.py .. [ 80%] bx/misc/bgzf_tests.py . [ 81%] bx/misc/cdb_tests.py . [ 82%] bx/motif/pwm_tests.py ... [ 84%] bx/motif/io/transfac_tests.py . [ 84%] bx/phylo/newick_tests.py ........ [ 90%] bx/phylo/phast_tests.py . [ 91%] bx/pwm/pwm_tests.py . [ 92%] bx/seq/fasta_tests.py . [ 92%] bx/seq/nib_tests.py . [ 93%] bx/seq/qdna_tests.py . [ 94%] bx/seq/seq_tests.py .... [ 97%] bx/seq/twobit_tests.py ... [ 99%] bx_extras/fpconst_tests.py . [100%] =============================== warnings summary =============================== bx_extras/pyparsing.py:65 /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx_extras/pyparsing.py:65: DeprecationWarning: module 'sre_constants' is deprecated import sre_constants .pybuild/cpython3_3.11_bx-python/build/bx/bbi/bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 12000 10 mean n/a n/a n/a n/a -0.164968 -0.194169 -0.0533029 0.00390226 -0.00226906 -0.0365958\n] .pybuild/cpython3_3.11_bx-python/build/bx/bbi/bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 20000 100 mean n/a n/a n/a n/a n/a n/a n/a n/a n/a -0.163546 -0.272118 -0.127111 -0.116169 0.0202627 -0.0243522 0.0349913 -0.0054408 -0.00101548 -0.0307148 -0.0374406 -0.0024669 -0.034042 -0.0343892 -0.0199075 -0.0406878 -0.0322236 -0.080479 -0.235991 -0.0897865 -0.041593 0.019942 -0.0608448 0.0144338 -0.0348468 0.0195101 -0.0555526 -0.0892809 0.011672 -0.173894 -0.0849444 0.0718796 0.0608432 0.0313183 0.0439315 -0.0242363 0.03288 0.0318241 0.122005 0.0879138 0.00102565 0.0334753 -0.00263047 -0.103023 -0.0275437 0.0958326 0.0147229 -0.0629772 0.00541821 0.062474 0.069069 -0.0389339 0.0206174 0.0278476 -0.0182009 0.00568736 0.000397305 0.13104 0.105984 -0.00662042 0.143469 0.111045 0.0322849 0.11452 0.0865186 0.055436 0.141388 0.103004 -0.00350213 0.053879 0.10582 0.0983312 -0.0351239 0.10085 0.110439 0.0451646 -0.00949231 0.0487825 0.042197 -0.00328549 -0.00851082 -0.0437525 0.0618735 -0.0315407 -0.00756448 -0.0523631 0.0432315 0.0228745 0.106009 0.0299314 0.0473805\n] .pybuild/cpython3_3.11_bx-python/build/bx/bbi/bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 12000 100 mean n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 0.0508425 0.0508425 -0.0768488 -0.189129 -0.439008 -0.182524 -0.304712 -0.197935 -0.462124 -0.194633 -0.2882 -0.0570346 -0.0724456 -0.301409 0.0508425 -0.0702441 -0.182524 0.0508425 0.0508425 -0.55459 0.0508425 0.0508425 0.0508425 0.0508425 0.00460946 -0.0152047 -0.0152047 -0.095562 -0.0570346 0.0695559 0.127898 0.000206554 -0.013003 0.0167182 -0.0559341 0.0508425 0.0904709 0.101479 -0.155005 -0.0812521 0.0145168 0.0992772 0.10368 -0.155005 0.002408 -0.0911592 -0.0768488 0.013416 -0.00529754 -0.0702443 0.0013071 -0.0702442 0.0919354 -0.101144 -0.000301097\n] .pybuild/cpython3_3.11_bx-python/build/bx/bbi/bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 20000 1000 mean n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 0.0508425 0.0508425 0.0508425 0.0112142 -0.164912 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/build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/bbi/bigwig_tests.py:109: RuntimeWarning: invalid value encountered in divide assert allclose(sd.sum_data / sd.valid_count, values) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================= 139 passed, 6 warnings in 7.87s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-bx/ -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/python-bx-0.9.0/debian/python3-bx running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running build_ext skipping 'lib/bx/bitset.c' Cython extension (up-to-date) skipping 'lib/bx/intervals/intersection.c' Cython extension (up-to-date) skipping 'lib/bx/align/_core.c' Cython extension (up-to-date) skipping 'lib/bx/seq/_nib.c' Cython extension (up-to-date) skipping 'lib/bx/seq/_twobit.c' Cython extension (up-to-date) skipping 'lib/bx/_seqmapping.c' Cython extension (up-to-date) skipping 'lib/bx/misc/bgzf.c' Cython extension (up-to-date) skipping 'lib/bx/intervals/cluster.c' Cython extension (up-to-date) skipping 'lib/bx/pwm/_position_weight_matrix.c' Cython extension (up-to-date) skipping 'lib/bx/motif/_pwm.c' Cython extension (up-to-date) skipping 'lib/bx/arrays/array_tree.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bpt_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/cirtree_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bbi_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bigwig_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bigbed_file.c' Cython extension (up-to-date) skipping 'lib/bx/align/_epo.c' Cython extension (up-to-date) skipping 'lib/bx/arrays/bed.c' Cython extension (up-to-date) skipping 'lib/bx/arrays/wiggle.c' Cython extension (up-to-date) skipping 'lib/bx/align/sitemask/_cpg.c' Cython extension (up-to-date) skipping 'lib/bx/intseq/ngramcount.c' Cython extension (up-to-date) skipping 'lib/bx/misc/_seekbzip2.c' Cython extension (up-to-date) running build_scripts running install_lib creating /build/python-bx-0.9.0/debian/python3-bx/usr creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11 creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/__pycache__/psyco_full.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/__pycache__ creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/seq_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/seq_tests/testN.fa -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/seq_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/seq_tests/testN.2bit -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/seq_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/seq_tests/testMask.fa -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/seq_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/seq_tests/testMask.2bit -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/seq_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/seq_tests/test2.fa -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/seq_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/seq_tests/test.qdna -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/seq_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/seq_tests/test.nib -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/seq_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/seq_tests/test.fa -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/seq_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/seq_tests/test.2bit -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/seq_tests creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/test_hg18.maf -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/mm8_chr7_tiny_only_mouse_rat.maf -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/mm8_chr7_tiny_no_index.maf -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/mm8_chr7_tiny_mm8_ind.maf.index -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/mm8_chr7_tiny_mm8_ind.maf -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/mm8_chr7_tiny_last_selected.maf -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/mm8_chr7_tiny.maf.lzot -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/mm8_chr7_tiny.maf.lzo -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/mm8_chr7_tiny.maf.index -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/mm8_chr7_tiny.maf.bz2t -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/mm8_chr7_tiny.maf.bz2 -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/mm8_chr7_tiny.maf -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/mm10_chr12_slice2.maf -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/mm10_chr12_slice.maf -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/mm10_chr12_lessspe_onlymouse_cow_elephant.maf -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/mm10_chr12_lessspe_one_selected.maf -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/mm10_chr12_lessspe.maf.index -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/mm10_chr12_lessspe.maf -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/mm10_chr12.bed -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/hg18.bed -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/empty.maf -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/dcking_ghp074.maf -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/dcking_ghp074.bed -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests/chunk1000 copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/chunk1000/intervals.txt -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests/chunk1000 copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/chunk1000/000000000.maf -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests/chunk1000 creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests/chunk1 copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/chunk1/intervals.txt -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests/chunk1 copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/chunk1/000000007.maf -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests/chunk1 copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/chunk1/000000006.maf -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests/chunk1 copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/chunk1/000000005.maf -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests/chunk1 copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/chunk1/000000004.maf -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests/chunk1 copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/chunk1/000000003.maf -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests/chunk1 copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/chunk1/000000002.maf -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests/chunk1 copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/chunk1/000000001.maf -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests/chunk1 copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/maf_tests/chunk1/000000000.maf -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/maf_tests/chunk1 creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/lav_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/lav_tests/orange.nib -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/lav_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/lav_tests/orange.fa -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/lav_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/lav_tests/apple_orange.lav -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/lav_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/lav_tests/apple.fa -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/lav_tests creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/epo_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/epo_tests/mm9.chrom.sizes -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/epo_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/epo_tests/hpeaks.mapped.nopeak2.bed4 -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/epo_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/epo_tests/hpeaks.mapped.bed4 -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/epo_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/epo_tests/hpeaks.mapped.bed12 -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/epo_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/epo_tests/hpeaks.bed -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/epo_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/epo_tests/hg19_one_peak.mapped.bed -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/epo_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/epo_tests/hg19_one_peak.bed -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/epo_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/epo_tests/hg19.mm9.rBest.chain.gz -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/epo_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/epo_tests/hg19.chrom.sizes -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/epo_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/epo_tests/epo_547_hs_mm_12way_mammals_65.out -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/epo_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/epo_tests/epo_547_hs_mm_12way_mammals_65.chain -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/epo_tests creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/bgzf_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/bgzf_tests/test.txt.gz -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/bgzf_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/bgzf_tests/test.txt -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/bgzf_tests creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/bbi_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/bbi_tests/test.wig -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/bbi_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/bbi_tests/test.regions -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/bbi_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/bbi_tests/test.expectation -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/bbi_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/bbi_tests/test.bw -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/bbi_tests copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/test_data/bbi_tests/make_expectation.sh -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/test_data/bbi_tests creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/__pycache__/wiggle_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/__pycache__/wiggle.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/__pycache__/seqmapping_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/__pycache__/seqmapping.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/__pycache__/interval_index_file_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/__pycache__/interval_index_file.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/__pycache__/gene_reader.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/__pycache__/filter.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/__pycache__/bitset_utils.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/__pycache__/bitset_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/__pycache__/bitset_builders.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/__pycache__/binned_array_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/__pycache__/binned_array.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/__pycache__/__init__.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/_seqmapping.cpython-311-x86_64-linux-gnu.so -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/bitset.cpython-311-x86_64-linux-gnu.so -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/__pycache__/score_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/__pycache__/score.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/__pycache__/maf_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/__pycache__/maf.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/__pycache__/lav_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/__pycache__/lav.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/__pycache__/epo_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/__pycache__/epo.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/__pycache__/axt.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/__pycache__/core.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/__pycache__/__init__.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/_epo.cpython-311-x86_64-linux-gnu.so -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/_core.cpython-311-x86_64-linux-gnu.so -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/sitemask creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/sitemask/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/sitemask/__pycache__/sitemask_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/sitemask/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/sitemask/__pycache__/quality.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/sitemask/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/sitemask/__pycache__/cpg.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/sitemask/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/sitemask/__pycache__/core.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/sitemask/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/sitemask/__pycache__/__init__.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/sitemask/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/sitemask/_cpg.cpython-311-x86_64-linux-gnu.so -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/sitemask copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/sitemask/__init__.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/sitemask copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/sitemask/core.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/sitemask copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/sitemask/cpg.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/sitemask copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/sitemask/quality.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/sitemask copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/sitemask/sitemask_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/sitemask creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/tools creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/tools/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/tools/__pycache__/tile.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/tools/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/tools/__pycache__/thread.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/tools/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/tools/__pycache__/fuse.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/tools/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/tools/__pycache__/chop.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/tools/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/tools/__pycache__/__init__.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/tools/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/tools/__init__.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/tools copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/tools/chop.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/tools copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/tools/fuse.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/tools copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/tools/thread.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/tools copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/tools/tile.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/tools copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/__init__.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/axt.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/core.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/epo.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/epo_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/lav.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/lav_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/maf.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/maf_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/score.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/align/score_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/arrays creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/arrays/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/arrays/__pycache__/array_tree_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/arrays/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/arrays/__pycache__/__init__.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/arrays/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/arrays/wiggle.cpython-311-x86_64-linux-gnu.so -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/arrays copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/arrays/bed.cpython-311-x86_64-linux-gnu.so -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/arrays copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/arrays/array_tree.cpython-311-x86_64-linux-gnu.so -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/arrays copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/arrays/__init__.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/arrays copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/arrays/array_tree_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/arrays creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/bbi creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/bbi/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/bbi/__pycache__/bigwig_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/bbi/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/bbi/__pycache__/__init__.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/bbi/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/bbi/bigbed_file.cpython-311-x86_64-linux-gnu.so -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/bbi copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/bbi/bigwig_file.cpython-311-x86_64-linux-gnu.so -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/bbi copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/bbi/bbi_file.cpython-311-x86_64-linux-gnu.so -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/bbi copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/bbi/cirtree_file.cpython-311-x86_64-linux-gnu.so -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/bbi copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/bbi/bpt_file.cpython-311-x86_64-linux-gnu.so -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/bbi copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/bbi/__init__.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/bbi copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/bbi/bigwig_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/bbi creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/cookbook creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/cookbook/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/cookbook/__pycache__/progress_bar.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/cookbook/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/cookbook/__pycache__/doc_optparse.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/cookbook/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/cookbook/__pycache__/attribute.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/cookbook/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/cookbook/__pycache__/argparse.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/cookbook/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/cookbook/__pycache__/__init__.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/cookbook/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/cookbook/__init__.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/cookbook copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/cookbook/argparse.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/cookbook copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/cookbook/attribute.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/cookbook copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/cookbook/doc_optparse.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/cookbook copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/cookbook/progress_bar.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/cookbook creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/__pycache__/random_intervals.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/__pycache__/io.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/__pycache__/intersection_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/__pycache__/cluster_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/__pycache__/__init__.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/cluster.cpython-311-x86_64-linux-gnu.so -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/intersection.cpython-311-x86_64-linux-gnu.so -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations/__pycache__/subtract.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations/__pycache__/merge.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations/__pycache__/quicksect.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations/__pycache__/join.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations/__pycache__/intersect.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations/__pycache__/find_clusters.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations/__pycache__/coverage.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations/__pycache__/concat.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations/__pycache__/complement.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations/__pycache__/base_coverage.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations/__pycache__/__init__.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations/__init__.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations/base_coverage.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations/complement.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations/concat.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations/coverage.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations/find_clusters.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations/intersect.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations/join.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations/merge.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations/quicksect.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/operations/subtract.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/__init__.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/cluster_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/intersection_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/io.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intervals/random_intervals.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intseq creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intseq/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intseq/__pycache__/__init__.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intseq/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intseq/ngramcount.cpython-311-x86_64-linux-gnu.so -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intseq copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/intseq/__init__.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intseq creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/__pycache__/seeklzop_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/__pycache__/seekbzip2_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/__pycache__/filecache_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/__pycache__/cdb_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/__pycache__/bgzf_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/__pycache__/cdb.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/__pycache__/binary_file.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/__pycache__/readlengths.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/__pycache__/seeklzop.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/__pycache__/seekbzip2.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/__pycache__/filecache.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/__pycache__/__init__.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/_seekbzip2.cpython-311-x86_64-linux-gnu.so -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/bgzf.cpython-311-x86_64-linux-gnu.so -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/__init__.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/bgzf_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/binary_file.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/cdb.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/cdb_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/filecache.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/filecache_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/readlengths.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/seekbzip2.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/seekbzip2_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/seeklzop.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/misc/seeklzop_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif/__pycache__/pwm_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif/__pycache__/pwm.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif/__pycache__/__init__.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif/_pwm.cpython-311-x86_64-linux-gnu.so -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif/io creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif/io/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif/io/__pycache__/transfac_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif/io/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif/io/__pycache__/transfac.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif/io/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif/io/__pycache__/__init__.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif/io/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif/io/__init__.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif/io copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif/io/transfac.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif/io copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif/io/transfac_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif/io creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif/logo creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif/logo/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif/logo/__pycache__/__init__.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif/logo/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif/logo/template.ps -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif/logo copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif/logo/__init__.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif/logo copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif/__init__.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif/pwm.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/motif/pwm_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/phylo creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/phylo/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/phylo/__pycache__/phast_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/phylo/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/phylo/__pycache__/phast.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/phylo/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/phylo/__pycache__/newick_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/phylo/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/phylo/__pycache__/newick.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/phylo/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/phylo/__pycache__/__init__.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/phylo/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/phylo/__init__.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/phylo copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/phylo/newick.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/phylo copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/phylo/newick_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/phylo copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/phylo/phast.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/phylo copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/phylo/phast_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/phylo creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm/__pycache__/pwm_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm/__pycache__/pwm_score_positions.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm/__pycache__/pwm_score_motifs.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm/__pycache__/maf_select_motifs.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm/__pycache__/bed_score_aligned_string.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm/__pycache__/position_weight_matrix.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm/__pycache__/pwm_score_maf.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm/__pycache__/bed_score_aligned_pwm.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm/__pycache__/__init__.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm/_position_weight_matrix.cpython-311-x86_64-linux-gnu.so -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm/__init__.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm/pwm_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm/bed_score_aligned_pwm.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm/bed_score_aligned_string.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm/maf_select_motifs.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm/position_weight_matrix.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm/pwm_score_motifs.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm/pwm_score_positions.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/pwm/pwm_score_maf.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/__pycache__/twobit_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/__pycache__/twobit.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/__pycache__/seq_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/__pycache__/qdna_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/__pycache__/nib_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/__pycache__/fasta_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/__pycache__/qdna.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/__pycache__/nib.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/__pycache__/seq.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/__pycache__/fasta.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/__pycache__/core.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/__pycache__/__init__.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/_twobit.cpython-311-x86_64-linux-gnu.so -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/_nib.cpython-311-x86_64-linux-gnu.so -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/__init__.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/core.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/fasta.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/fasta_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/nib.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/nib_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/qdna.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/qdna_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/seq.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/seq_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/twobit.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seq/twobit_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/tabular creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/tabular/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/tabular/__pycache__/io.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/tabular/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/tabular/__pycache__/__init__.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/tabular/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/tabular/__init__.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/tabular copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/tabular/io.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/tabular copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/__init__.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/binned_array.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/binned_array_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/bitset_builders.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/bitset_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/bitset_utils.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/filter.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/gene_reader.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/interval_index_file_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seqmapping.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/seqmapping_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/wiggle.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/wiggle_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx/interval_index_file.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx_extras creating /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx_extras/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx_extras/__pycache__/stats.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx_extras/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx_extras/__pycache__/pstat.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx_extras/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx_extras/__pycache__/fpconst_tests.cpython-311-pytest-7.2.1.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx_extras/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx_extras/__pycache__/fpconst.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx_extras/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx_extras/__pycache__/pyparsing.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx_extras/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx_extras/__pycache__/lrucache.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx_extras/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx_extras/__pycache__/__init__.cpython-311.pyc -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx_extras/__pycache__ copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx_extras/__init__.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx_extras copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx_extras/fpconst.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx_extras copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx_extras/fpconst_tests.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx_extras copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx_extras/lrucache.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx_extras copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx_extras/pstat.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx_extras copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx_extras/pyparsing.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx_extras copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/bx_extras/stats.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx_extras copying /build/python-bx-0.9.0/.pybuild/cpython3_3.11_bx-python/build/psyco_full.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/sitemask/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/sitemask/core.py to core.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/sitemask/cpg.py to cpg.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/sitemask/quality.py to quality.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/sitemask/sitemask_tests.py to sitemask_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/tools/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/tools/chop.py to chop.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/tools/fuse.py to fuse.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/tools/thread.py to thread.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/tools/tile.py to tile.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/axt.py to axt.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/core.py to core.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/epo.py to epo.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/epo_tests.py to epo_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/lav.py to lav.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/lav_tests.py to lav_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/maf.py to maf.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/maf_tests.py to maf_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/score.py to score.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/align/score_tests.py to score_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/arrays/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/arrays/array_tree_tests.py to array_tree_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/bbi/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/bbi/bigwig_tests.py to bigwig_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/cookbook/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/cookbook/argparse.py to argparse.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/cookbook/attribute.py to attribute.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/cookbook/doc_optparse.py to doc_optparse.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/cookbook/progress_bar.py to progress_bar.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations/base_coverage.py to base_coverage.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations/complement.py to complement.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations/concat.py to concat.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations/coverage.py to coverage.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations/find_clusters.py to find_clusters.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations/intersect.py to intersect.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations/join.py to join.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations/merge.py to merge.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations/quicksect.py to quicksect.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/operations/subtract.py to subtract.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/cluster_tests.py to cluster_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/intersection_tests.py to intersection_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/io.py to io.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intervals/random_intervals.py to random_intervals.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/intseq/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc/bgzf_tests.py to bgzf_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc/binary_file.py to binary_file.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc/cdb.py to cdb.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc/cdb_tests.py to cdb_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc/filecache.py to filecache.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc/filecache_tests.py to filecache_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc/readlengths.py to readlengths.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc/seekbzip2.py to seekbzip2.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc/seekbzip2_tests.py to seekbzip2_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc/seeklzop.py to seeklzop.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/misc/seeklzop_tests.py to seeklzop_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif/io/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif/io/transfac.py to transfac.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif/io/transfac_tests.py to transfac_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif/logo/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif/pwm.py to pwm.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/motif/pwm_tests.py to pwm_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/phylo/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/phylo/newick.py to newick.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/phylo/newick_tests.py to newick_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/phylo/phast.py to phast.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/phylo/phast_tests.py to phast_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm/pwm_tests.py to pwm_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm/bed_score_aligned_pwm.py to bed_score_aligned_pwm.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm/bed_score_aligned_string.py to bed_score_aligned_string.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm/maf_select_motifs.py to maf_select_motifs.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm/position_weight_matrix.py to position_weight_matrix.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm/pwm_score_motifs.py to pwm_score_motifs.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm/pwm_score_positions.py to pwm_score_positions.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/pwm/pwm_score_maf.py to pwm_score_maf.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq/core.py to core.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq/fasta.py to fasta.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq/fasta_tests.py to fasta_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq/nib.py to nib.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq/nib_tests.py to nib_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq/qdna.py to qdna.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq/qdna_tests.py to qdna_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq/seq.py to seq.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq/seq_tests.py to seq_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq/twobit.py to twobit.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seq/twobit_tests.py to twobit_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/tabular/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/tabular/io.py to io.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/binned_array.py to binned_array.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/binned_array_tests.py to binned_array_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/bitset_builders.py to bitset_builders.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/bitset_tests.py to bitset_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/bitset_utils.py to bitset_utils.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/filter.py to filter.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/gene_reader.py to gene_reader.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/interval_index_file_tests.py to interval_index_file_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seqmapping.py to seqmapping.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/seqmapping_tests.py to seqmapping_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/wiggle.py to wiggle.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/wiggle_tests.py to wiggle_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx/interval_index_file.py to interval_index_file.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx_extras/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx_extras/fpconst.py to fpconst.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx_extras/fpconst_tests.py to fpconst_tests.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx_extras/lrucache.py to lrucache.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx_extras/pstat.py to pstat.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx_extras/pyparsing.py to pyparsing.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx_extras/stats.py to stats.cpython-311.pyc byte-compiling /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/psyco_full.py to psyco_full.cpython-311.pyc running install_egg_info running egg_info creating lib/bx_python.egg-info writing lib/bx_python.egg-info/PKG-INFO writing dependency_links to lib/bx_python.egg-info/dependency_links.txt writing requirements to lib/bx_python.egg-info/requires.txt writing top-level names to lib/bx_python.egg-info/top_level.txt writing manifest file 'lib/bx_python.egg-info/SOURCES.txt' reading manifest file 'lib/bx_python.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'lib/bx_python.egg-info/SOURCES.txt' Copying lib/bx_python.egg-info to /build/python-bx-0.9.0/debian/python3-bx/usr/lib/python3.11/dist-packages/bx_python-0.9.0.egg-info Skipping SOURCES.txt running install_scripts creating /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/gene_fourfold_sites.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/aggregate_scores_in_intervals.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/align_print_template.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/axt_extract_ranges.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/axt_to_fasta.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/axt_to_lav.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/axt_to_maf.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/bed_bigwig_profile.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/bed_build_windows.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/bed_complement.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/bed_count_by_interval.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/bed_count_overlapping.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/bed_coverage.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/bed_coverage_by_interval.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/bed_diff_basewise_summary.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/bed_extend_to.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/bed_intersect.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/bed_intersect_basewise.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/bed_merge_overlapping.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/bed_rand_intersect.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/bed_subtract_basewise.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/bnMapper.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/div_snp_table_chr.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/find_in_sorted_file.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/get_scores_in_intervals.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/int_seqs_to_char_strings.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/interval_count_intersections.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/interval_join.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/lav_to_axt.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/lav_to_maf.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/line_select.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/lzop_build_offset_table.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/mMK_bitset.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_build_index.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_chop.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_chunk.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_col_counts.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_col_counts_all.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_count.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_covered_ranges.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_covered_regions.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_div_sites.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_drop_overlapping.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_extract_chrom_ranges.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_extract_ranges.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_extract_ranges_indexed.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_filter.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_filter_max_wc.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_gap_frequency.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_gc_content.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_interval_alignibility.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_limit_to_species.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_mapping_word_frequency.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_mask_cpg.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_mean_length_ungapped_piece.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_percent_columns_matching.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_percent_identity.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_print_chroms.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_print_scores.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_randomize.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_region_coverage_by_src.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_select.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_shuffle_columns.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_species_in_all_files.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_split_by_src.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_thread_for_species.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_tile.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_tile_2.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_tile_2bit.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_to_axt.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_to_concat_fasta.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_to_fasta.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_to_int_seqs.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_translate_chars.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_truncate.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/maf_word_frequency.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/mask_quality.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/nib_chrom_intervals_to_fasta.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/nib_intervals_to_fasta.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/nib_length.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/one_field_per_line.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/out_to_chain.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/prefix_lines.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/pretty_table.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/qv_to_bqv.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/random_lines.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/table_add_column.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/table_filter.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/tfloc_summary.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/ucsc_gene_table_to_intervals.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/wiggle_to_array_tree.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/wiggle_to_binned_array.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/wiggle_to_chr_binned_array.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin copying build/scripts-3.11/wiggle_to_simple.py -> /build/python-bx-0.9.0/debian/python3-bx/usr/bin changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/gene_fourfold_sites.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/aggregate_scores_in_intervals.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/align_print_template.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/axt_extract_ranges.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/axt_to_fasta.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/axt_to_lav.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/axt_to_maf.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/bed_bigwig_profile.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/bed_build_windows.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/bed_complement.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/bed_count_by_interval.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/bed_count_overlapping.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/bed_coverage.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/bed_coverage_by_interval.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/bed_diff_basewise_summary.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/bed_extend_to.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/bed_intersect.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/bed_intersect_basewise.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/bed_merge_overlapping.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/bed_rand_intersect.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/bed_subtract_basewise.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/bnMapper.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/div_snp_table_chr.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/find_in_sorted_file.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/get_scores_in_intervals.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/int_seqs_to_char_strings.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/interval_count_intersections.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/interval_join.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/lav_to_axt.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/lav_to_maf.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/line_select.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/lzop_build_offset_table.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/mMK_bitset.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_build_index.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_chop.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_chunk.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_col_counts.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_col_counts_all.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_count.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_covered_ranges.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_covered_regions.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_div_sites.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_drop_overlapping.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_extract_chrom_ranges.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_extract_ranges.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_extract_ranges_indexed.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_filter.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_filter_max_wc.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_gap_frequency.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_gc_content.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_interval_alignibility.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_limit_to_species.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_mapping_word_frequency.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_mask_cpg.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_mean_length_ungapped_piece.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_percent_columns_matching.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_percent_identity.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_print_chroms.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_print_scores.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_randomize.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_region_coverage_by_src.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_select.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_shuffle_columns.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_species_in_all_files.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_split_by_src.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_thread_for_species.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_tile.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_tile_2.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_tile_2bit.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_to_axt.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_to_concat_fasta.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_to_fasta.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_to_int_seqs.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_translate_chars.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_truncate.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/maf_word_frequency.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/mask_quality.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/nib_chrom_intervals_to_fasta.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/nib_intervals_to_fasta.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/nib_length.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/one_field_per_line.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/out_to_chain.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/prefix_lines.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/pretty_table.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/qv_to_bqv.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/random_lines.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/table_add_column.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/table_filter.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/tfloc_summary.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/ucsc_gene_table_to_intervals.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/wiggle_to_array_tree.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/wiggle_to_binned_array.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/wiggle_to_chr_binned_array.py to 755 changing mode of /build/python-bx-0.9.0/debian/python3-bx/usr/bin/wiggle_to_simple.py to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/python-bx-0.9.0' dh_python3 --shebang=/usr/bin/python3 I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/wiggle_to_simple.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/wiggle_to_chr_binned_array.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/wiggle_to_binned_array.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/wiggle_to_array_tree.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/ucsc_gene_table_to_intervals.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/tfloc_summary.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/table_filter.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/table_add_column.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/random_lines.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/qv_to_bqv.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/pretty_table.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/prefix_lines.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/out_to_chain.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/one_field_per_line.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/nib_length.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/nib_intervals_to_fasta.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/nib_chrom_intervals_to_fasta.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/mask_quality.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_word_frequency.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_truncate.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_translate_chars.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_to_int_seqs.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_to_fasta.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_to_concat_fasta.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_to_axt.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_tile_2bit.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_tile_2.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_tile.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_thread_for_species.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_split_by_src.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_species_in_all_files.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_shuffle_columns.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_select.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_region_coverage_by_src.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_randomize.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_print_scores.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_print_chroms.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_percent_identity.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_percent_columns_matching.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_mean_length_ungapped_piece.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_mask_cpg.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_mapping_word_frequency.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_limit_to_species.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_interval_alignibility.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_gc_content.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_gap_frequency.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_filter_max_wc.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_filter.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_extract_ranges_indexed.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_extract_ranges.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_extract_chrom_ranges.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_drop_overlapping.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_div_sites.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_covered_regions.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_covered_ranges.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_count.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_col_counts_all.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_col_counts.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_chunk.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_chop.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_build_index.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/mMK_bitset.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/lzop_build_offset_table.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/line_select.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/lav_to_maf.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/lav_to_axt.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/interval_join.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/interval_count_intersections.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/int_seqs_to_char_strings.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/get_scores_in_intervals.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/find_in_sorted_file.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/div_snp_table_chr.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bnMapper.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_subtract_basewise.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_rand_intersect.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_merge_overlapping.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_intersect_basewise.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_intersect.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_extend_to.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_diff_basewise_summary.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_coverage_by_interval.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_coverage.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_count_overlapping.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_count_by_interval.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_complement.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_build_windows.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_bigwig_profile.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/axt_to_maf.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/axt_to_lav.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/axt_to_fasta.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/axt_extract_ranges.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/align_print_template.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/aggregate_scores_in_intervals.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/gene_fourfold_sites.py make[1]: Leaving directory '/build/python-bx-0.9.0' dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-bx' in '../python3-bx_0.9.0-1_amd64.deb'. dpkg-deb: building package 'python3-bx-dbgsym' in '../python3-bx-dbgsym_0.9.0-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../python-bx_0.9.0-1_amd64.buildinfo dpkg-genchanges --build=binary -O../python-bx_0.9.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/141464 and its subdirectories I: Current time: Tue May 28 21:46:24 -12 2024 I: pbuilder-time-stamp: 1716975984 Thu Apr 27 03:23:24 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Thu Apr 27 03:23:24 UTC 2023 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Thu Apr 27 03:27:00 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Thu Apr 27 03:27:00 UTC 2023 I: python-bx_0.9.0-1_amd64.changes: Format: 1.8 Date: Fri, 18 Feb 2022 12:05:03 +0530 Source: python-bx Binary: python3-bx python3-bx-dbgsym Architecture: amd64 Version: 0.9.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: python3-bx - library to manage genomic data and its alignment Changes: python-bx (0.9.0-1) unstable; urgency=medium . [ Andreas Tille ] * Team upload. * New upstream version * Build-Depends: s/nose/pytest/ * Standards-Version: 4.6.1 (routine-update) . [ Nilesh Patra ] * B-D on python3-pytest-cython * Re-diff, Re-enable shebang.patch Checksums-Sha1: d7fadaf1d3a4fd8561d282803dcde85cf753aa56 6623 python-bx_0.9.0-1_amd64.buildinfo 881fcc79230601e705996a7f36993a698fa0be20 2772144 python3-bx-dbgsym_0.9.0-1_amd64.deb 9a2083a0df1de550ece1452429309179995b8c1e 1925312 python3-bx_0.9.0-1_amd64.deb Checksums-Sha256: 5fba7a402a10e35e65c8960127f700517c99bcc7f96ef1d3239345506b04998b 6623 python-bx_0.9.0-1_amd64.buildinfo 927c26208fd9f8d0324e47998831bf904c510badcc845c61e5efd4df8dfb4dfb 2772144 python3-bx-dbgsym_0.9.0-1_amd64.deb c6a8002900198817eb57e065d204554a1497a7f89d8c084b4115fb6496777800 1925312 python3-bx_0.9.0-1_amd64.deb Files: a6fc900387dd64013b1b79a076770921 6623 python optional python-bx_0.9.0-1_amd64.buildinfo 1df1eaf3d8ba3e4e689c9bdee5ee7506 2772144 debug optional python3-bx-dbgsym_0.9.0-1_amd64.deb 933496e7ea1a18591fa1aaea52f12e9d 1925312 python optional python3-bx_0.9.0-1_amd64.deb Thu Apr 27 03:27:02 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.if8DH31F/python-bx_0.9.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.if8DH31F/python-bx_0.9.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.if8DH31F/python-bx_0.9.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.if8DH31F/b1/python-bx_0.9.0-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.if8DH31F/b2/python-bx_0.9.0-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.897s) 0.897s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.082s) 0.082s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Thu Apr 27 03:27:04 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Thu Apr 27 03:27:04 UTC 2023 I: python-bx from bookworm built successfully and reproducibly on amd64. Thu Apr 27 03:27:05 UTC 2023 I: Submitting .buildinfo files to external archives: Thu Apr 27 03:27:05 UTC 2023 I: Submitting 8.0K b1/python-bx_0.9.0-1_amd64.buildinfo.asc Thu Apr 27 03:27:07 UTC 2023 I: Submitting 8.0K b2/python-bx_0.9.0-1_amd64.buildinfo.asc Thu Apr 27 03:27:08 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Apr 27 03:27:08 UTC 2023 I: Done submitting .buildinfo files. Thu Apr 27 03:27:08 UTC 2023 I: Removing signed python-bx_0.9.0-1_amd64.buildinfo.asc files: removed './b1/python-bx_0.9.0-1_amd64.buildinfo.asc' removed './b2/python-bx_0.9.0-1_amd64.buildinfo.asc'