Sat Nov 9 23:52:35 UTC 2024 I: starting to build pymatgen/bookworm/amd64 on jenkins on '2024-11-09 23:52' Sat Nov 9 23:52:35 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_37/36537/console.log Sat Nov 9 23:52:35 UTC 2024 I: Downloading source for bookworm/pymatgen=2022.11.7+dfsg1-11+deb12u1 --2024-11-09 23:52:35-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/pymatgen/pymatgen_2022.11.7%2bdfsg1-11%2bdeb12u1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 3076 (3.0K) [text/prs.lines.tag] Saving to: ‘pymatgen_2022.11.7+dfsg1-11+deb12u1.dsc’ 0K ... 100% 387M=0s 2024-11-09 23:52:35 (387 MB/s) - ‘pymatgen_2022.11.7+dfsg1-11+deb12u1.dsc’ saved [3076/3076] Sat Nov 9 23:52:35 UTC 2024 I: pymatgen_2022.11.7+dfsg1-11+deb12u1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pymatgen Binary: python3-pymatgen, python-pymatgen-doc Architecture: any all Version: 2022.11.7+dfsg1-11+deb12u1 Maintainer: Debichem Team Uploaders: Drew Parsons Homepage: https://pymatgen.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/debichem-team/pymatgen Vcs-Git: https://salsa.debian.org/debichem-team/pymatgen.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: @builddeps@, python3-mp-api Build-Depends: debhelper-compat (= 13), pymatgen-test-files , dh-python, dh-sequence-python3, cython3, pybuild-plugin-pyproject, python3-setuptools, python3-all-dev, python3-pytest, python3-matplotlib (>= 1.5~), python3-monty (>= 3.0.2~), python3-networkx (>= 2.2~), python3-numpy (>= 1.20.1~), python3-palettable (>= 3.1.1~), python3-pandas (>= 1.1.3~), python3-plotly (>= 4.5.0~), python3-scipy (>= 1.5.2~), python3-spglib (>= 2.0.2~), python3-pybtex (>= 0.22.2~), python3-requests (>= 2.24.0~), python3-ruamel.yaml (>= 0.16.12~), python3-sympy (>= 1.6.2~), python3-tabulate (>= 0.8.7~), python3-tqdm (>= 4.41.0~), python3-uncertainties (>= 3.1.4~), python3-ase (>= 3.3~), python3-bs4 (>= 4.9.1~), python3-vtk9, python3-h5py (>= 2.10.0~), python3-netcdf4 (>= 1.5.3~), python3-phonopy, python3-openbabel Build-Depends-Indep: dh-sequence-sphinxdoc , libjs-mathjax , python3-sphinx-rtd-theme Package-List: python-pymatgen-doc deb doc optional arch=all python3-pymatgen deb python optional arch=any Checksums-Sha1: 7cb0f5da30192a3b3bed2669041916d7fa201382 41141588 pymatgen_2022.11.7+dfsg1.orig.tar.xz b0b7d6c3749927dd02c13e05d4dc4ef77764c558 17876 pymatgen_2022.11.7+dfsg1-11+deb12u1.debian.tar.xz Checksums-Sha256: 3bbdce4c7eafd5fe84d178bde61dd27218f16097c55eb8f2c64d2521313d3284 41141588 pymatgen_2022.11.7+dfsg1.orig.tar.xz d0361c8c0c3052d77f9c87a3c72f2dfb51c548f4ed63645970f15de731bee406 17876 pymatgen_2022.11.7+dfsg1-11+deb12u1.debian.tar.xz Files: f94779e2dda7b21b19b90db43dbc06c4 41141588 pymatgen_2022.11.7+dfsg1.orig.tar.xz 2e2490d28f1faf22f94ec47b2c0d0a76 17876 pymatgen_2022.11.7+dfsg1-11+deb12u1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEtuYvPRKsOElcDakFEMKTtsN8TjYFAmbPK/wACgkQEMKTtsN8 TjbSsxAAsn/+/Vp5drjyb0HvooeHWmOZ4cbQ+WeDeG0TKJMkWAhoeYNQjhNaif/X 0JRO1LfIWeJAbcytuceBbbBAWoGP3bhHtUHqeVREF97hH5QH5Mnp3pKD6zC8d5rP 9t2lLYtxmrVj1BzNIiwME65ZHFJWnGOXzTEpQJeGrxxdFv461ZlNSAwHVpjt/jQq wPsLuxJz8dWxy5e2OsoONFmYedxHJVsPOw+DY10sdYqrk9B2XQGUq8ciBDdqMyxf /GsIZG5W7H1eeNb2w2E+A1taXPpaR2WdkQCxLqMF43BNVEMlgSENCwz3jAVCxIj0 8+DvPF28s6pGH2nG7WN6y3WqwXLLVm7+ftiophizOOg6hcRiGOD7XKJMpGJBGe2e Isgj5hvqzRf0wV5ynMHcmfH8uUJcvTPNWy/KTHRKsIcSZeY2wUgJDV/+NpmW9xJW OklXHTTAtjFXmjjAh/nyw7fi8IGO+LMVrN2tVt9L2XDU3qPNZS/24ttpR+b+J+Ss RcQuZPoKXHssbhnxfZ6FtwfQ0qs21YHTiCk+CplufyV1V6mZZbt/IWXEXKMNuvZf SvSsxBe5sRCO2wL8tn3nWiVEFProHoojJiVoHFcEEPZiI4OXF9Xmne0dM3+kMzda 2TiZ+QkFxPTFFWIXOfdFMMZceLu2sV899jkskL0Q+hFczwotr+g= =dUDW -----END PGP SIGNATURE----- Sat Nov 9 23:52:35 UTC 2024 I: Checking whether the package is not for us Sat Nov 9 23:52:35 UTC 2024 I: Starting 1st build on remote node infom01-amd64.debian.net. Sat Nov 9 23:52:35 UTC 2024 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Sun Nov 10 00:25:10 UTC 2024 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Nov 9 11:52:38 -12 2024 I: pbuilder-time-stamp: 1731196358 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pymatgen_2022.11.7+dfsg1-11+deb12u1.dsc] I: copying [./pymatgen_2022.11.7+dfsg1.orig.tar.xz] I: copying [./pymatgen_2022.11.7+dfsg1-11+deb12u1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Aug 28 01:54:04 2024 -12 gpgv: using RSA key B6E62F3D12AC38495C0DA90510C293B6C37C4E36 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pymatgen_2022.11.7+dfsg1-11+deb12u1.dsc: no acceptable signature found dpkg-source: info: extracting pymatgen in pymatgen-2022.11.7+dfsg1 dpkg-source: info: unpacking pymatgen_2022.11.7+dfsg1.orig.tar.xz dpkg-source: info: unpacking pymatgen_2022.11.7+dfsg1-11+deb12u1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip_failing_WulffShapeTest.patch dpkg-source: info: applying docs_no_local_python.patch dpkg-source: info: applying test_lammps_regex_path.patch dpkg-source: info: applying docs_mathjax_local.patch dpkg-source: info: applying numpy_1.24.patch dpkg-source: info: applying test_piezo_4538090.patch dpkg-source: info: applying test_piezo_sensitivity_99b5cd7.patch dpkg-source: info: applying openbabel_OBAlign.patch dpkg-source: info: applying test_lammps_sorted.patch dpkg-source: info: applying skip_nonfree_testfile.patch dpkg-source: info: applying fix_phonon_bandstructures_7ba41e0.patch dpkg-source: info: applying stress_fp_approx_2839.patch dpkg-source: info: applying no_mp_api.patch dpkg-source: info: applying CVE-2024-23346.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/118380/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='b54b8b9e6dbf42e8aa97d0c3d2f658b0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='118380' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9zJoLBgl/pbuilderrc_iFCt --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9zJoLBgl/b1 --logfile b1/build.log pymatgen_2022.11.7+dfsg1-11+deb12u1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.1.0-26-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Mar 29 2024 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Oct 18 00:56 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Oct 18 00:56 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Oct 18 00:56 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Oct 18 00:56 more -rwsr-xr-x 1 root root 59704 Oct 18 00:56 mount -rwxr-xr-x 1 root root 18744 Oct 18 00:56 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Mar 29 2024 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Jul 28 2023 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Oct 18 00:56 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Jan 19 2024 tar -rwxr-xr-x 1 root root 14520 Jul 28 2023 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Oct 18 00:56 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Oct 18 00:56 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/118380/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), pymatgen-test-files, dh-python, dh-sequence-python3, cython3, pybuild-plugin-pyproject, python3-setuptools, python3-all-dev, python3-pytest, python3-matplotlib (>= 1.5~), python3-monty (>= 3.0.2~), python3-networkx (>= 2.2~), python3-numpy (>= 1.20.1~), python3-palettable (>= 3.1.1~), python3-pandas (>= 1.1.3~), python3-plotly (>= 4.5.0~), python3-scipy (>= 1.5.2~), python3-spglib (>= 2.0.2~), python3-pybtex (>= 0.22.2~), python3-requests (>= 2.24.0~), python3-ruamel.yaml (>= 0.16.12~), python3-sympy (>= 1.6.2~), python3-tabulate (>= 0.8.7~), python3-tqdm (>= 4.41.0~), python3-uncertainties (>= 3.1.4~), python3-ase (>= 3.3~), python3-bs4 (>= 4.9.1~), python3-vtk9, python3-h5py (>= 2.10.0~), python3-netcdf4 (>= 1.5.3~), python3-phonopy, python3-openbabel, dh-sequence-sphinxdoc, libjs-mathjax, python3-sphinx-rtd-theme dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19546 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on pymatgen-test-files; however: Package pymatgen-test-files is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib (>= 1.5~); however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-monty (>= 3.0.2~); however: Package python3-monty is not installed. pbuilder-satisfydepends-dummy depends on python3-networkx (>= 2.2~); however: Package python3-networkx is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy (>= 1.20.1~); however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-palettable (>= 3.1.1~); however: Package python3-palettable is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas (>= 1.1.3~); however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-plotly (>= 4.5.0~); however: Package python3-plotly is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy (>= 1.5.2~); however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-spglib (>= 2.0.2~); however: Package python3-spglib is not installed. pbuilder-satisfydepends-dummy depends on python3-pybtex (>= 0.22.2~); however: Package python3-pybtex is not installed. pbuilder-satisfydepends-dummy depends on python3-requests (>= 2.24.0~); however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-ruamel.yaml (>= 0.16.12~); however: Package python3-ruamel.yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-sympy (>= 1.6.2~); however: Package python3-sympy is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate (>= 0.8.7~); however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on python3-tqdm (>= 4.41.0~); however: Package python3-tqdm is not installed. pbuilder-satisfydepends-dummy depends on python3-uncertainties (>= 3.1.4~); however: Package python3-uncertainties is not installed. pbuilder-satisfydepends-dummy depends on python3-ase (>= 3.3~); however: Package python3-ase is not installed. pbuilder-satisfydepends-dummy depends on python3-bs4 (>= 4.9.1~); however: Package python3-bs4 is not installed. pbuilder-satisfydepends-dummy depends on python3-vtk9; however: Package python3-vtk9 is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py (>= 2.10.0~); however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-netcdf4 (>= 1.5.3~); however: Package python3-netcdf4 is not installed. pbuilder-satisfydepends-dummy depends on python3-phonopy; however: Package python3-phonopy is not installed. pbuilder-satisfydepends-dummy depends on python3-openbabel; however: Package python3-openbabel is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-sphinxdoc; however: Package dh-sequence-sphinxdoc is not installed. pbuilder-satisfydepends-dummy depends on libjs-mathjax; however: Package libjs-mathjax is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-rtd-theme; however: Package python3-sphinx-rtd-theme is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-lato{a} fonts-lyx{a} fonts-mathjax{a} gettext{a} gettext-base{a} groff-base{a} ibverbs-providers{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcbor0.8{a} libcurl3-gnutls{a} libcurl4{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-mesa0{a} libegl1{a} libelf1{a} libevdev2{a} libevent-core-2.1-7{a} libevent-pthreads-2.1-7{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgfortran5{a} libgl1{a} libgl1-mesa-dri{a} libgl2ps1.4{a} libglapi-mesa{a} libglew2.2{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgudev-1.0-0{a} libharfbuzz0b{a} libhdf5-103-1{a} libhdf5-hl-100{a} libhwloc-plugins{a} libhwloc15{a} libibverbs1{a} libice6{a} libicu72{a} libimagequant0{a} libinchi1{a} libinput-bin{a} libinput10{a} libjbig0{a} libjpeg62-turbo{a} libjs-bootstrap{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libjsoncpp25{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libllvm15{a} liblzf1{a} libmaeparser1{a} libmagic-mgc{a} libmagic1{a} libmd4c0{a} libmtdev1{a} libmunge2{a} libnetcdf19{a} libnghttp2-14{a} libnl-3-200{a} libnl-route-3-200{a} libnuma1{a} libogg0{a} libopenbabel7{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libopengl0{a} libopenjp2-7{a} libopenmpi3{a} libpciaccess0{a} libpcre2-16-0{a} libpipeline1{a} libpixman-1-0{a} libpmix2{a} libpng16-16{a} libproj25{a} libpsl5{a} libpsm-infinipath1{a} libpsm2-2{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqhull-r8.0{a} libqt5core5a{a} libqt5dbus5{a} libqt5gui5{a} libqt5network5{a} libqt5widgets5{a} libraqm0{a} librdmacm1{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsm6{a} libssh2-1{a} libsub-override-perl{a} libsz2{a} libtbb12{a} libtbbbind-2-5{a} libtbbmalloc2{a} libtcl8.6{a} libtheora0{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libucx0{a} libvtk9.1{a} libvtk9.1-qt{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwayland-server0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxft2{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxnvctrl0{a} libxrender1{a} libxshmfence1{a} libxsimd-dev{a} libxslt1.1{a} libxss1{a} libxxf86vm1{a} libyaml-0-2{a} libz3-4{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} openssl{a} po-debconf{a} proj-data{a} pybuild-plugin-pyproject{a} pymatgen-test-files{a} python-babel-localedata{a} python-matplotlib-data{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-ase{a} python3-attr{a} python3-babel{a} python3-beniget{a} python3-brotli{a} python3-bs4{a} python3-build{a} python3-certifi{a} python3-cftime{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-docutils{a} python3-fastjsonschema{a} python3-fonttools{a} python3-fs{a} python3-future{a} python3-gast{a} python3-h5py{a} python3-h5py-serial{a} python3-idna{a} python3-imagesize{a} python3-importlib-metadata{a} python3-iniconfig{a} python3-installer{a} python3-jinja2{a} python3-jsonschema{a} python3-jupyter-core{a} python3-kiwisolver{a} python3-latexcodec{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-minimal{a} python3-monty{a} python3-more-itertools{a} python3-mpi4py{a} python3-mpmath{a} python3-nbformat{a} python3-netcdf4{a} python3-networkx{a} python3-numpy{a} python3-openbabel{a} python3-packaging{a} python3-palettable{a} python3-pandas{a} python3-pandas-lib{a} python3-pbr{a} python3-pep517{a} python3-phonopy{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-plotly{a} python3-pluggy{a} python3-ply{a} python3-py{a} python3-pybtex{a} python3-pygments{a} python3-pyparsing{a} python3-pyrsistent{a} python3-pytest{a} python3-pythran{a} python3-requests{a} python3-roman{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-snowballstemmer{a} python3-soupsieve{a} python3-spglib{a} python3-sphinx{a} python3-sphinx-rtd-theme{a} python3-sympy{a} python3-tabulate{a} python3-tenacity{a} python3-tk{a} python3-toml{a} python3-tomli{a} python3-tqdm{a} python3-traitlets{a} python3-tz{a} python3-ufolib2{a} python3-uncertainties{a} python3-urllib3{a} python3-vtk9{a} python3-wheel{a} python3-yaml{a} python3-zipp{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} shared-mime-info{a} sphinx-common{a} sphinx-rtd-theme-common{a} tk8.6-blt2.5{a} unicode-data{a} x11-common{a} xkb-data{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl dbus isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libqt5svg5 libsasl2-modules lynx publicsuffix python-monty-doc python3-bottleneck python3-gdal python3-html5lib python3-json-pointer python3-numba python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pydot python3-pygraphviz python3-pymatgen python3-rfc3987 python3-tables python3-uritemplate python3-webcolors qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 wget xauth xdg-user-dirs 0 packages upgraded, 352 newly installed, 0 to remove and 0 not upgraded. Need to get 432 MB of archives. After unpacking 2224 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 fonts-lato all 2.0-2.1 [2696 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6+deb12u4 [815 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1+deb12u1 [98.9 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6+deb12u4 [2066 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6+deb12u4 [1797 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6+deb12u4 [573 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 12 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 sgml-base all 1.31 [15.4 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.15-1~deb12u1 [1427 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+deb12u2 [86.8 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libcbor0.8 amd64 0.8.0-2+b1 [27.4 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 libfido2-1 amd64 1.12.0-2+b1 [77.2 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 openssh-client amd64 1:9.2p1-2+deb12u3 [991 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [1035 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5+deb12u3 [398 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2+deb12u2 [292 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2+deb12u2 [760 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 libtk8.6 amd64 8.6.13-2 [781 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 cython3 amd64 0.29.32-2+b1 [1302 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-7~deb12u1 [517 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 62 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u1 [687 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130+deb12u1 [104 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 docutils-common all 0.19+dfsg-6 [127 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 fontconfig amd64 2.14.1-4 [449 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 fonts-lyx all 2.3.7-1 [186 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libnl-3-200 amd64 3.7.0-0.2+b1 [63.1 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 libnl-route-3-200 amd64 3.7.0-0.2+b1 [185 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 libibverbs1 amd64 44.0-2 [60.7 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 ibverbs-providers amd64 44.0-2 [335 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 libaec0 amd64 1.0.6-1+b1 [21.1 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get: 88 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-21 [9508 kB] Get: 89 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get: 90 http://deb.debian.org/debian bookworm/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB] Get: 91 http://deb.debian.org/debian bookworm/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 libcairo2 amd64 1.16.0-7 [575 kB] Get: 94 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 96 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 97 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1+deb12u2 [73.0 kB] Get: 98 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 99 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 100 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.88.1-10+deb12u8 [385 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-10+deb12u8 [390 kB] Get: 103 http://deb.debian.org/debian bookworm/main amd64 libdbus-1-3 amd64 1.14.10-1~deb12u1 [201 kB] Get: 104 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get: 105 http://deb.debian.org/debian bookworm/main amd64 libdouble-conversion3 amd64 3.2.1-1 [41.5 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 libdrm-common all 2.4.114-1 [7112 B] Get: 107 http://deb.debian.org/debian bookworm/main amd64 libdrm2 amd64 2.4.114-1+b1 [37.5 kB] Get: 108 http://deb.debian.org/debian bookworm/main amd64 libdrm-amdgpu1 amd64 2.4.114-1+b1 [20.9 kB] Get: 109 http://deb.debian.org/debian bookworm/main amd64 libpciaccess0 amd64 0.17-2 [51.4 kB] Get: 110 http://deb.debian.org/debian bookworm/main amd64 libdrm-intel1 amd64 2.4.114-1+b1 [64.0 kB] Get: 111 http://deb.debian.org/debian bookworm/main amd64 libdrm-nouveau2 amd64 2.4.114-1+b1 [19.1 kB] Get: 112 http://deb.debian.org/debian bookworm/main amd64 libdrm-radeon1 amd64 2.4.114-1+b1 [21.8 kB] Get: 113 http://deb.debian.org/debian bookworm/main amd64 libwayland-server0 amd64 1.21.0-1 [35.9 kB] Get: 114 http://deb.debian.org/debian bookworm/main amd64 libgbm1 amd64 22.3.6-1+deb12u1 [38.0 kB] Get: 115 http://deb.debian.org/debian bookworm/main amd64 libglapi-mesa amd64 22.3.6-1+deb12u1 [35.7 kB] Get: 116 http://deb.debian.org/debian bookworm/main amd64 libwayland-client0 amd64 1.21.0-1 [28.3 kB] Get: 117 http://deb.debian.org/debian bookworm/main amd64 libx11-xcb1 amd64 2:1.8.4-2+deb12u2 [192 kB] Get: 118 http://deb.debian.org/debian bookworm/main amd64 libxcb-dri2-0 amd64 1.15-1 [107 kB] Get: 119 http://deb.debian.org/debian bookworm/main amd64 libxcb-dri3-0 amd64 1.15-1 [107 kB] Get: 120 http://deb.debian.org/debian bookworm/main amd64 libxcb-present0 amd64 1.15-1 [105 kB] Get: 121 http://deb.debian.org/debian bookworm/main amd64 libxcb-randr0 amd64 1.15-1 [117 kB] Get: 122 http://deb.debian.org/debian bookworm/main amd64 libxcb-sync1 amd64 1.15-1 [109 kB] Get: 123 http://deb.debian.org/debian bookworm/main amd64 libxcb-xfixes0 amd64 1.15-1 [109 kB] Get: 124 http://deb.debian.org/debian bookworm/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get: 125 http://deb.debian.org/debian bookworm/main amd64 libegl-mesa0 amd64 22.3.6-1+deb12u1 [114 kB] Get: 126 http://deb.debian.org/debian bookworm/main amd64 libevdev2 amd64 1.13.0+dfsg-1 [34.0 kB] Get: 127 http://deb.debian.org/debian bookworm/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-8 [131 kB] Get: 128 http://deb.debian.org/debian bookworm/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-8 [53.6 kB] Get: 129 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1+deb12u1 [150 kB] Get: 130 http://deb.debian.org/debian bookworm/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.2 [168 kB] Get: 131 http://deb.debian.org/debian bookworm/main amd64 libnuma1 amd64 2.0.16-1 [21.0 kB] Get: 132 http://deb.debian.org/debian bookworm/main amd64 libpsm2-2 amd64 11.2.185-2 [180 kB] Get: 133 http://deb.debian.org/debian bookworm/main amd64 librdmacm1 amd64 44.0-2 [68.6 kB] Get: 134 http://deb.debian.org/debian bookworm/main amd64 libfabric1 amd64 1.17.0-3 [627 kB] Get: 135 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get: 136 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 137 http://deb.debian.org/debian bookworm/main amd64 libglvnd0 amd64 1.6.0-1 [51.8 kB] Get: 138 http://deb.debian.org/debian bookworm/main amd64 libxcb-glx0 amd64 1.15-1 [122 kB] Get: 139 http://deb.debian.org/debian bookworm/main amd64 libxfixes3 amd64 1:6.0.0-2 [22.7 kB] Get: 140 http://deb.debian.org/debian bookworm/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get: 141 http://deb.debian.org/debian bookworm/main amd64 libz3-4 amd64 4.8.12-3.1 [7216 kB] Get: 142 http://deb.debian.org/debian bookworm/main amd64 libllvm15 amd64 1:15.0.6-4+b1 [23.1 MB] Get: 143 http://deb.debian.org/debian bookworm/main amd64 libsensors-config all 1:3.6.0-7.1 [14.3 kB] Get: 144 http://deb.debian.org/debian bookworm/main amd64 libsensors5 amd64 1:3.6.0-7.1 [34.2 kB] Get: 145 http://deb.debian.org/debian bookworm/main amd64 libgl1-mesa-dri amd64 22.3.6-1+deb12u1 [7239 kB] Get: 146 http://deb.debian.org/debian bookworm/main amd64 libglx-mesa0 amd64 22.3.6-1+deb12u1 [147 kB] Get: 147 http://deb.debian.org/debian bookworm/main amd64 libglx0 amd64 1.6.0-1 [34.4 kB] Get: 148 http://deb.debian.org/debian bookworm/main amd64 libgl1 amd64 1.6.0-1 [88.4 kB] Get: 149 http://deb.debian.org/debian bookworm/main amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2 [41.3 kB] Get: 150 http://deb.debian.org/debian bookworm/main amd64 libglew2.2 amd64 2.2.0-4+b1 [175 kB] Get: 151 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2+deb12u4 [1400 kB] Get: 152 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get: 153 http://deb.debian.org/debian bookworm/main amd64 libgudev-1.0-0 amd64 237-2 [15.1 kB] Get: 154 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get: 155 http://deb.debian.org/debian bookworm/main amd64 libsz2 amd64 1.0.6-1+b1 [7804 B] Get: 156 http://deb.debian.org/debian bookworm/main amd64 libhdf5-103-1 amd64 1.10.8+repack1-1 [1237 kB] Get: 157 http://deb.debian.org/debian bookworm/main amd64 libhdf5-hl-100 amd64 1.10.8+repack1-1 [67.8 kB] Get: 158 http://deb.debian.org/debian bookworm/main amd64 libxnvctrl0 amd64 525.85.05-3~deb12u1 [13.5 kB] Get: 159 http://deb.debian.org/debian bookworm/main amd64 ocl-icd-libopencl1 amd64 2.3.1-1 [43.0 kB] Get: 160 http://deb.debian.org/debian bookworm/main amd64 libhwloc15 amd64 2.9.0-1 [154 kB] Get: 161 http://deb.debian.org/debian bookworm/main amd64 libhwloc-plugins amd64 2.9.0-1 [17.5 kB] Get: 162 http://deb.debian.org/debian bookworm/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get: 163 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get: 164 http://deb.debian.org/debian bookworm/main amd64 libinchi1 amd64 1.03+dfsg-4+b2 [436 kB] Get: 165 http://deb.debian.org/debian bookworm/main amd64 libwacom-common all 2.6.0-1 [58.4 kB] Get: 166 http://deb.debian.org/debian bookworm/main amd64 libwacom9 amd64 2.6.0-1 [21.5 kB] Get: 167 http://deb.debian.org/debian bookworm/main amd64 libinput-bin amd64 1.22.1-1 [23.2 kB] Get: 168 http://deb.debian.org/debian bookworm/main amd64 libmtdev1 amd64 1.1.6-1 [23.0 kB] Get: 169 http://deb.debian.org/debian bookworm/main amd64 libinput10 amd64 1.22.1-1 [125 kB] Get: 170 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get: 171 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get: 172 http://deb.debian.org/debian bookworm/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 173 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 174 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 175 http://deb.debian.org/debian bookworm/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 176 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 177 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 178 http://deb.debian.org/debian bookworm/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 179 http://deb.debian.org/debian bookworm/main amd64 libjsoncpp25 amd64 1.9.5-4 [78.6 kB] Get: 180 http://deb.debian.org/debian bookworm/main amd64 libopenblas0-pthread amd64 0.3.21+ds-4 [6709 kB] Get: 181 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get: 182 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [28.9 kB] Get: 183 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get: 184 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get: 185 http://deb.debian.org/debian bookworm/main amd64 liblzf1 amd64 3.6-3 [10.2 kB] Get: 186 http://deb.debian.org/debian bookworm/main amd64 libmaeparser1 amd64 1.3.0-1 [88.9 kB] Get: 187 http://deb.debian.org/debian bookworm/main amd64 libmd4c0 amd64 0.4.8-1 [44.2 kB] Get: 188 http://deb.debian.org/debian bookworm/main amd64 libmunge2 amd64 0.5.15-2 [19.5 kB] Get: 189 http://deb.debian.org/debian bookworm/main amd64 libnetcdf19 amd64 1:4.9.0-3+b1 [476 kB] Get: 190 http://deb.debian.org/debian bookworm/main amd64 libogg0 amd64 1.3.5-3 [23.4 kB] Get: 191 http://deb.debian.org/debian bookworm/main amd64 libopenbabel7 amd64 3.1.1+dfsg-9+b3 [3123 kB] Get: 192 http://deb.debian.org/debian bookworm/main amd64 libopenblas0 amd64 0.3.21+ds-4 [32.6 kB] Get: 193 http://deb.debian.org/debian bookworm/main amd64 libopenblas-pthread-dev amd64 0.3.21+ds-4 [4971 kB] Get: 194 http://deb.debian.org/debian bookworm/main amd64 libopenblas-dev amd64 0.3.21+ds-4 [44.9 kB] Get: 195 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-2 [189 kB] Get: 196 http://deb.debian.org/debian bookworm/main amd64 libpmix2 amd64 4.2.2-1+deb12u1 [622 kB] Get: 197 http://deb.debian.org/debian bookworm/main amd64 libucx0 amd64 1.13.1-1 [860 kB] Get: 198 http://deb.debian.org/debian bookworm/main amd64 libopenmpi3 amd64 4.1.4-3+b1 [2422 kB] Get: 199 http://deb.debian.org/debian bookworm/main amd64 libpcre2-16-0 amd64 10.42-1 [245 kB] Get: 200 http://deb.debian.org/debian bookworm/main amd64 proj-data all 9.1.1-1 [6212 kB] Get: 201 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.2+deb12u1 [286 kB] Get: 202 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-6+deb12u1 [316 kB] Get: 203 http://deb.debian.org/debian bookworm/main amd64 libproj25 amd64 9.1.1-1+b1 [1277 kB] Get: 204 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6+deb12u4 [1989 kB] Get: 205 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 206 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6+deb12u4 [4738 kB] Get: 207 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get: 208 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get: 209 http://deb.debian.org/debian bookworm/main amd64 libqhull-r8.0 amd64 2020.2-5 [248 kB] Get: 210 http://deb.debian.org/debian bookworm/main amd64 shared-mime-info amd64 2.2-1 [729 kB] Get: 211 http://deb.debian.org/debian bookworm/main amd64 libqt5core5a amd64 5.15.8+dfsg-11+deb12u2 [1810 kB] Get: 212 http://deb.debian.org/debian bookworm/main amd64 libqt5dbus5 amd64 5.15.8+dfsg-11+deb12u2 [211 kB] Get: 213 http://deb.debian.org/debian bookworm/main amd64 libegl1 amd64 1.6.0-1 [33.7 kB] Get: 214 http://deb.debian.org/debian bookworm/main amd64 libqt5network5 amd64 5.15.8+dfsg-11+deb12u2 [675 kB] Get: 215 http://deb.debian.org/debian bookworm/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 216 http://deb.debian.org/debian bookworm/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [27.4 kB] Get: 217 http://deb.debian.org/debian bookworm/main amd64 libxcb-util1 amd64 0.4.0-1+b1 [23.2 kB] Get: 218 http://deb.debian.org/debian bookworm/main amd64 libxcb-image0 amd64 0.4.0-2 [22.9 kB] Get: 219 http://deb.debian.org/debian bookworm/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b2 [16.4 kB] Get: 220 http://deb.debian.org/debian bookworm/main amd64 libxcb-render-util0 amd64 0.3.9-1+b1 [18.3 kB] Get: 221 http://deb.debian.org/debian bookworm/main amd64 libxcb-shape0 amd64 1.15-1 [106 kB] Get: 222 http://deb.debian.org/debian bookworm/main amd64 libxcb-xinerama0 amd64 1.15-1 [105 kB] Get: 223 http://deb.debian.org/debian bookworm/main amd64 libxcb-xinput0 amd64 1.15-1 [130 kB] Get: 224 http://deb.debian.org/debian bookworm/main amd64 libxcb-xkb1 amd64 1.15-1 [129 kB] Get: 225 http://deb.debian.org/debian bookworm/main amd64 xkb-data all 2.35.1-1 [764 kB] Get: 226 http://deb.debian.org/debian bookworm/main amd64 libxkbcommon0 amd64 1.5.0-1 [106 kB] Get: 227 http://deb.debian.org/debian bookworm/main amd64 libxkbcommon-x11-0 amd64 1.5.0-1 [15.6 kB] Get: 228 http://deb.debian.org/debian bookworm/main amd64 libqt5gui5 amd64 5.15.8+dfsg-11+deb12u2 [3408 kB] Get: 229 http://deb.debian.org/debian bookworm/main amd64 libqt5widgets5 amd64 5.15.8+dfsg-11+deb12u2 [2381 kB] Get: 230 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4.1 [10.6 kB] Get: 231 http://deb.debian.org/debian bookworm/main amd64 libtbbmalloc2 amd64 2021.8.0-2 [46.3 kB] Get: 232 http://deb.debian.org/debian bookworm/main amd64 libtbbbind-2-5 amd64 2021.8.0-2 [13.5 kB] Get: 233 http://deb.debian.org/debian bookworm/main amd64 libtbb12 amd64 2021.8.0-2 [79.1 kB] Get: 234 http://deb.debian.org/debian bookworm/main amd64 libtheora0 amd64 1.1.1+dfsg.1-16.1+b1 [154 kB] Get: 235 http://deb.debian.org/debian bookworm/main amd64 libopengl0 amd64 1.6.0-1 [30.6 kB] Get: 236 http://deb.debian.org/debian bookworm/main amd64 libvtk9.1 amd64 9.1.0+really9.1.0+dfsg2-5 [18.4 MB] Get: 237 http://deb.debian.org/debian bookworm/main amd64 libvtk9.1-qt amd64 9.1.0+really9.1.0+dfsg2-5 [160 kB] Get: 238 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.4-0.2+deb12u1 [99.4 kB] Get: 239 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.4-0.2+deb12u1 [109 kB] Get: 240 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get: 241 http://deb.debian.org/debian bookworm/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get: 242 http://deb.debian.org/debian bookworm/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get: 243 http://deb.debian.org/debian bookworm/main amd64 openmpi-common all 4.1.4-3 [167 kB] Get: 244 http://deb.debian.org/debian bookworm/main amd64 openmpi-bin amd64 4.1.4-3+b1 [226 kB] Get: 245 http://deb.debian.org/debian bookworm/main amd64 mpi-default-bin amd64 1.14 [4752 B] Get: 246 http://deb.debian.org/debian bookworm/main amd64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 247 http://deb.debian.org/debian bookworm/main amd64 python3-zipp all 1.0.0-6 [6696 B] Get: 248 http://deb.debian.org/debian bookworm/main amd64 python3-importlib-metadata all 4.12.0-1 [24.9 kB] Get: 249 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get: 250 http://deb.debian.org/debian bookworm/main amd64 python3-tomli all 2.0.1-2 [17.9 kB] Get: 251 http://deb.debian.org/debian bookworm/main amd64 python3-pep517 all 0.13.0-2 [17.4 kB] Get: 252 http://deb.debian.org/debian bookworm/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get: 253 http://deb.debian.org/debian bookworm/main amd64 python3-wheel all 0.38.4-2 [30.8 kB] Get: 254 http://deb.debian.org/debian bookworm/main amd64 python3-build all 0.9.0-1 [20.7 kB] Get: 255 http://deb.debian.org/debian bookworm/main amd64 python3-installer all 0.6.0+dfsg1-1 [18.1 kB] Get: 256 http://deb.debian.org/debian bookworm/main amd64 pybuild-plugin-pyproject all 5.20230130+deb12u1 [9184 B] Get: 257 http://deb.debian.org/debian bookworm/main amd64 pymatgen-test-files all 2022.11.7-3 [171 MB] Get: 258 http://deb.debian.org/debian bookworm/main amd64 python-babel-localedata all 2.10.3-1 [5615 kB] Get: 259 http://deb.debian.org/debian bookworm/main amd64 python-matplotlib-data all 3.6.3-1 [2744 kB] Get: 260 http://deb.debian.org/debian bookworm/main amd64 python3-alabaster all 0.7.12-1 [20.8 kB] Get: 261 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get: 262 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6+deb12u4 [616 kB] Get: 263 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get: 264 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Get: 265 http://deb.debian.org/debian bookworm/main amd64 python3-appdirs all 1.4.4-3 [13.0 kB] Get: 266 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 267 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1+deb12u1 [4960 kB] Get: 268 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get: 269 http://deb.debian.org/debian bookworm/main amd64 python3-gast all 0.5.2-2 [9364 B] Get: 270 http://deb.debian.org/debian bookworm/main amd64 python3-beniget all 0.4.1-3 [9920 B] Get: 271 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get: 272 http://deb.debian.org/debian bookworm/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get: 273 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.10.1-2 [15.2 MB] Get: 274 http://deb.debian.org/debian bookworm/main amd64 python3-spglib amd64 2.0.2-1+b3 [205 kB] Get: 275 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get: 276 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-2 [78.3 kB] Get: 277 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.4.0-1.1+deb12u1 [472 kB] Get: 278 http://deb.debian.org/debian bookworm/main amd64 python3-tk amd64 3.11.2-3 [98.3 kB] Get: 279 http://deb.debian.org/debian bookworm/main amd64 python3-pil.imagetk amd64 9.4.0-1.1+deb12u1 [74.2 kB] Get: 280 http://deb.debian.org/debian bookworm/main amd64 python3-pyparsing all 3.0.9-1 [138 kB] Get: 281 http://deb.debian.org/debian bookworm/main amd64 python3-contourpy amd64 1.0.7-1+b1 [176 kB] Get: 282 http://deb.debian.org/debian bookworm/main amd64 python3-cycler all 0.11.0-1 [8020 B] Get: 283 http://deb.debian.org/debian bookworm/main amd64 python3-brotli amd64 1.0.9-2+b6 [281 kB] Get: 284 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get: 285 http://deb.debian.org/debian bookworm/main amd64 python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB] Get: 286 http://deb.debian.org/debian bookworm/main amd64 python3-mpmath all 1.2.1-2 [418 kB] Get: 287 http://deb.debian.org/debian bookworm/main amd64 python3-sympy all 1.11.1-1 [4358 kB] Get: 288 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.7.1-4 [30.1 kB] Get: 289 http://deb.debian.org/debian bookworm/main amd64 python3-fs all 2.4.16-2 [95.2 kB] Get: 290 http://deb.debian.org/debian bookworm/main amd64 python3-lxml amd64 4.9.2-1+b1 [1194 kB] Get: 291 http://deb.debian.org/debian bookworm/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b2 [25.0 kB] Get: 292 http://deb.debian.org/debian bookworm/main amd64 unicode-data all 15.0.0-1 [7984 kB] Get: 293 http://deb.debian.org/debian bookworm/main amd64 python3-fonttools amd64 4.38.0-1+b1 [1012 kB] Get: 294 http://deb.debian.org/debian bookworm/main amd64 python3-kiwisolver amd64 1.4.4-1+b1 [60.1 kB] Get: 295 http://deb.debian.org/debian bookworm/main amd64 python3-matplotlib amd64 3.6.3-1+b1 [6921 kB] Get: 296 http://deb.debian.org/debian bookworm/main amd64 python3-ase all 3.22.1-3 [1354 kB] Get: 297 http://deb.debian.org/debian bookworm/main amd64 python3-babel all 2.10.3-1 [103 kB] Get: 298 http://deb.debian.org/debian bookworm/main amd64 python3-soupsieve all 2.3.2-1 [38.8 kB] Get: 299 http://deb.debian.org/debian bookworm/main amd64 python3-bs4 all 4.11.2-2 [121 kB] Get: 300 http://deb.debian.org/debian bookworm/main amd64 python3-certifi all 2022.9.24-1 [153 kB] Get: 301 http://deb.debian.org/debian bookworm/main amd64 python3-cftime amd64 1.6.2-3+b1 [192 kB] Get: 302 http://deb.debian.org/debian bookworm/main amd64 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get: 303 http://deb.debian.org/debian bookworm/main amd64 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get: 304 http://deb.debian.org/debian bookworm/main amd64 python3-roman all 3.3-3 [9880 B] Get: 305 http://deb.debian.org/debian bookworm/main amd64 python3-docutils all 0.19+dfsg-6 [382 kB] Get: 306 http://deb.debian.org/debian bookworm/main amd64 python3-fastjsonschema all 2.16.3-2 [21.6 kB] Get: 307 http://deb.debian.org/debian bookworm/main amd64 python3-future all 0.18.2-6 [348 kB] Get: 308 http://deb.debian.org/debian bookworm/main amd64 python3-h5py-serial amd64 3.7.0-8 [804 kB] Get: 309 http://deb.debian.org/debian bookworm/main amd64 python3-h5py all 3.7.0-8 [10.3 kB] Get: 310 http://deb.debian.org/debian bookworm/main amd64 python3-idna all 3.3-1+deb12u1 [41.0 kB] Get: 311 http://deb.debian.org/debian bookworm/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 312 http://deb.debian.org/debian bookworm/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 313 http://deb.debian.org/debian bookworm/main amd64 python3-markupsafe amd64 2.1.2-1+b1 [13.2 kB] Get: 314 http://deb.debian.org/debian bookworm/main amd64 python3-jinja2 all 3.1.2-1 [119 kB] Get: 315 http://deb.debian.org/debian bookworm/main amd64 python3-pyrsistent amd64 0.18.1-1+b3 [60.0 kB] Get: 316 http://deb.debian.org/debian bookworm/main amd64 python3-jsonschema all 4.10.3-1 [67.9 kB] Get: 317 http://deb.debian.org/debian bookworm/main amd64 python3-traitlets all 5.5.0-1 [92.4 kB] Get: 318 http://deb.debian.org/debian bookworm/main amd64 python3-jupyter-core all 4.12.0-1 [27.3 kB] Get: 319 http://deb.debian.org/debian bookworm/main amd64 python3-latexcodec all 2.0.1-2 [18.0 kB] Get: 320 http://deb.debian.org/debian bookworm/main amd64 python3-monty all 2022.9.9+dfsg-1 [39.2 kB] Get: 321 http://deb.debian.org/debian bookworm/main amd64 python3-mpi4py amd64 3.1.4-2+b2 [432 kB] Get: 322 http://deb.debian.org/debian bookworm/main amd64 python3-nbformat all 5.5.0-1 [43.2 kB] Get: 323 http://deb.debian.org/debian bookworm/main amd64 python3-netcdf4 amd64 1.6.2-1+b1 [465 kB] Get: 324 http://deb.debian.org/debian bookworm/main amd64 python3-networkx all 2.8.8-1 [1425 kB] Get: 325 http://deb.debian.org/debian bookworm/main amd64 python3-openbabel amd64 3.1.1+dfsg-9+b3 [557 kB] Get: 326 http://deb.debian.org/debian bookworm/main amd64 python3-palettable all 3.3.0-3 [65.3 kB] Get: 327 http://deb.debian.org/debian bookworm/main amd64 python3-pandas-lib amd64 1.5.3+dfsg-2 [3499 kB] Get: 328 http://deb.debian.org/debian bookworm/main amd64 python3-pandas all 1.5.3+dfsg-2 [2885 kB] Get: 329 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Get: 330 http://deb.debian.org/debian bookworm/main amd64 python3-pbr all 5.10.0-2 [61.4 kB] Get: 331 http://deb.debian.org/debian bookworm/main amd64 python3-yaml amd64 6.0-3+b2 [119 kB] Get: 332 http://deb.debian.org/debian bookworm/main amd64 python3-phonopy amd64 2.17.1-1 [259 kB] Get: 333 http://deb.debian.org/debian bookworm/main amd64 python3-urllib3 all 1.26.12-1 [117 kB] Get: 334 http://deb.debian.org/debian bookworm/main amd64 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get: 335 http://deb.debian.org/debian bookworm/main amd64 python3-tenacity all 8.2.1-1 [43.6 kB] Get: 336 http://deb.debian.org/debian bookworm/main amd64 python3-plotly all 5.4.1+dfsg-1 [2613 kB] Get: 337 http://deb.debian.org/debian bookworm/main amd64 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 338 http://deb.debian.org/debian bookworm/main amd64 python3-py all 1.11.0-1 [89.2 kB] Get: 339 http://deb.debian.org/debian bookworm/main amd64 python3-pybtex all 0.24.0-3 [74.5 kB] Get: 340 http://deb.debian.org/debian bookworm/main amd64 python3-pygments all 2.14.0+dfsg-1 [783 kB] Get: 341 http://deb.debian.org/debian bookworm/main amd64 python3-pytest all 7.2.1-2 [236 kB] Get: 342 http://deb.debian.org/debian bookworm/main amd64 python3-ruamel.yaml.clib amd64 0.2.7-1+b2 [113 kB] Get: 343 http://deb.debian.org/debian bookworm/main amd64 python3-ruamel.yaml all 0.17.21-1 [103 kB] Get: 344 http://deb.debian.org/debian bookworm/main amd64 python3-snowballstemmer all 2.2.0-2 [57.8 kB] Get: 345 http://deb.debian.org/debian bookworm/main amd64 sphinx-common all 5.3.0-4 [653 kB] Get: 346 http://deb.debian.org/debian bookworm/main amd64 python3-sphinx all 5.3.0-4 [549 kB] Get: 347 http://deb.debian.org/debian bookworm/main amd64 sphinx-rtd-theme-common all 1.2.0+dfsg-1 [997 kB] Get: 348 http://deb.debian.org/debian bookworm/main amd64 python3-sphinx-rtd-theme all 1.2.0+dfsg-1 [27.7 kB] Get: 349 http://deb.debian.org/debian bookworm/main amd64 python3-tabulate all 0.8.9-1 [35.2 kB] Get: 350 http://deb.debian.org/debian bookworm/main amd64 python3-tqdm all 4.64.1-1 [97.7 kB] Get: 351 http://deb.debian.org/debian bookworm/main amd64 python3-uncertainties all 3.1.6-1 [79.1 kB] Get: 352 http://deb.debian.org/debian bookworm/main amd64 python3-vtk9 amd64 9.1.0+really9.1.0+dfsg2-5 [6628 kB] Fetched 432 MB in 6s (70.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19546 files and directories currently installed.) Preparing to unpack .../fonts-lato_2.0-2.1_all.deb ... Unpacking fonts-lato (2.0-2.1) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.2-6+deb12u4_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6+deb12u4) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1+deb12u1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1+deb12u1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6+deb12u4_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6+deb12u4) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6+deb12u4) ... Setting up libexpat1:amd64 (2.5.0-1+deb12u1) ... Setting up python3.11-minimal (3.11.2-6+deb12u4) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19888 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../3-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6+deb12u4_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.2-6+deb12u4) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6+deb12u4_amd64.deb ... Unpacking python3.11 (3.11.2-6+deb12u4) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20322 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_3.0.15-1~deb12u1_amd64.deb ... Unpacking openssl (3.0.15-1~deb12u1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../006-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../009-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.38.1-5+deb12u2_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+deb12u2) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../012-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.11.2-2_amd64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../014-libbsd0_0.11.7-2_amd64.deb ... Unpacking libbsd0:amd64 (0.11.7-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../015-libedit2_3.1-20221030-2_amd64.deb ... Unpacking libedit2:amd64 (3.1-20221030-2) ... Selecting previously unselected package libcbor0.8:amd64. Preparing to unpack .../016-libcbor0.8_0.8.0-2+b1_amd64.deb ... Unpacking libcbor0.8:amd64 (0.8.0-2+b1) ... Selecting previously unselected package libfido2-1:amd64. Preparing to unpack .../017-libfido2-1_1.12.0-2+b1_amd64.deb ... Unpacking libfido2-1:amd64 (1.12.0-2+b1) ... Selecting previously unselected package openssh-client. Preparing to unpack .../018-openssh-client_1%3a9.2p1-2+deb12u3_amd64.deb ... Unpacking openssh-client (1:9.2p1-2+deb12u3) ... Selecting previously unselected package m4. Preparing to unpack .../019-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../020-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../021-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../022-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../023-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../024-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../025-libbrotli1_1.0.9-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b6) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../026-libpng16-16_1.6.39-2_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.39-2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../027-libfreetype6_2.12.1+dfsg-5+deb12u3_amd64.deb ... Unpacking libfreetype6:amd64 (2.12.1+dfsg-5+deb12u3) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../028-fonts-dejavu-core_2.37-6_all.deb ... Unpacking fonts-dejavu-core (2.37-6) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../029-fontconfig-config_2.14.1-4_amd64.deb ... Unpacking fontconfig-config (2.14.1-4) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../030-libfontconfig1_2.14.1-4_amd64.deb ... Unpacking libfontconfig1:amd64 (2.14.1-4) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../031-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../032-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../033-libxcb1_1.15-1_amd64.deb ... Unpacking libxcb1:amd64 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../034-libx11-data_2%3a1.8.4-2+deb12u2_all.deb ... Unpacking libx11-data (2:1.8.4-2+deb12u2) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../035-libx11-6_2%3a1.8.4-2+deb12u2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../036-libxrender1_1%3a0.9.10-1.1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../037-libxft2_2.3.6-1_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../038-libxext6_2%3a1.3.4-1+b1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b1) ... 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Setting up libjson-perl (4.10000-1) ... Setting up libnl-3-200:amd64 (3.7.0-0.2+b1) ... Setting up libpsm2-2 (11.2.185-2) ... Setting up openmpi-common (4.1.4-3) ... Setting up libmd4c0:amd64 (0.4.8-1) ... Setting up libopenjp2-7:amd64 (2.5.0-2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up sgml-base (1.31) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.2) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libfido2-1:amd64 (1.12.0-2+b1) ... Setting up python-matplotlib-data (3.6.3-1) ... Setting up openssl (3.0.15-1~deb12u1) ... Setting up libwebpmux3:amd64 (1.2.4-0.2+deb12u1) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up libdrm-common (2.4.114-1) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up libevdev2:amd64 (1.13.0+dfsg-1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Setting up pymatgen-test-files (2022.11.7-3) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (1.2.0+dfsg-1) ... Setting up libgudev-1.0-0:amd64 (237-2) ... Setting up libsz2:amd64 (1.0.6-1+b1) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libinchi1 (1.03+dfsg-4+b2) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-8) ... Setting up libwacom-common (2.6.0-1) ... Setting up libxkbcommon0:amd64 (1.5.0-1) ... Setting up libwayland-client0:amd64 (1.21.0-1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libopenblas0-pthread:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libxcb-xfixes0:amd64 (1.15-1) ... Setting up libxcb-xinput0:amd64 (1.15-1) ... Setting up libtool (2.4.7-7~deb12u1) ... Setting up libxcb-render0:amd64 (1.15-1) ... Setting up libwacom9:amd64 (2.6.0-1) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libxcb-glx0:amd64 (1.15-1) ... Setting up libwebpdemux2:amd64 (1.2.4-0.2+deb12u1) ... Setting up libedit2:amd64 (3.1-20221030-2) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libxcb-keysyms1:amd64 (0.4.0-1+b2) ... Setting up libxcb-shape0:amd64 (1.15-1) ... Setting up libxcb-render-util0:amd64 (0.3.9-1+b1) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up libxcb-icccm4:amd64 (0.4.1-1.1) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up libxcb-util1:amd64 (0.4.0-1+b1) ... Setting up libinput-bin (1.22.1-1) ... Setting up libxcb-xkb1:amd64 (1.15-1) ... Setting up libxcb-image0:amd64 (0.4.0-2) ... Setting up libtbbbind-2-5:amd64 (2021.8.0-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.2+b1) ... Setting up libxcb-present0:amd64 (1.15-1) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libxcb-xinerama0:amd64 (1.15-1) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-5+deb12u3) ... Setting up libxcb-sync1:amd64 (1.15-1) ... Setting up shared-mime-info (2.2-1) ... Setting up libxkbcommon-x11-0:amd64 (1.5.0-1) ... Setting up libqt5core5a:amd64 (5.15.8+dfsg-11+deb12u2) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up libxcb-dri2-0:amd64 (1.15-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libdrm2:amd64 (2.4.114-1+b1) ... Setting up dwz (0.15-1) ... Setting up libopenblas0:amd64 (0.3.21+ds-4) ... Setting up groff-base (1.22.4-10) ... Setting up libqt5dbus5:amd64 (5.15.8+dfsg-11+deb12u2) ... Setting up libxcb-randr0:amd64 (1.15-1) ... Setting up xml-core (0.18+nmu1) ... Setting up libllvm15:amd64 (1:15.0.6-4+b1) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up libcurl4:amd64 (7.88.1-10+deb12u8) ... Setting up libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Setting up libfontconfig1:amd64 (2.14.1-4) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.114-1+b1) ... Setting up libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up libxcb-dri3-0:amd64 (1.15-1) ... Setting up libinput10:amd64 (1.22.1-1) ... Setting up libx11-xcb1:amd64 (2:1.8.4-2+deb12u2) ... Setting up libibverbs1:amd64 (44.0-2) ... Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:amd64 (2.4.114-1+b1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up libgbm1:amd64 (22.3.6-1+deb12u1) ... Setting up ibverbs-providers:amd64 (44.0-2) ... Setting up libdrm-radeon1:amd64 (2.4.114-1+b1) ... Setting up openssh-client (1:9.2p1-2+deb12u3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6+deb12u4) ... Setting up libdrm-intel1:amd64 (2.4.114-1+b1) ... Setting up libgl1-mesa-dri:amd64 (22.3.6-1+deb12u1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:amd64 (7.88.1-10+deb12u8) ... Setting up libtbb12:amd64 (2021.8.0-2) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.16.0-7) ... Setting up libqt5network5:amd64 (5.15.8+dfsg-11+deb12u2) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libxnvctrl0:amd64 (525.85.05-3~deb12u1) ... Setting up libopenblas-dev:amd64 (0.3.21+ds-4) ... Setting up libegl-mesa0:amd64 (22.3.6-1+deb12u1) ... Setting up libxfixes3:amd64 (1:6.0.0-2) ... Setting up libraqm0:amd64 (0.7.0-4.1) ... Setting up sphinx-common (5.3.0-4) ... Setting up libhdf5-103-1:amd64 (1.10.8+repack1-1) ... Setting up libtheora0:amd64 (1.1.1+dfsg.1-16.1+b1) ... Setting up libegl1:amd64 (1.6.0-1) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up libhdf5-hl-100:amd64 (1.10.8+repack1-1) ... Setting up librdmacm1:amd64 (44.0-2) ... Setting up python3.11 (3.11.2-6+deb12u4) ... Setting up libucx0:amd64 (1.13.1-1) ... Setting up libxft2:amd64 (2.3.6-1) ... Setting up libglx-mesa0:amd64 (22.3.6-1+deb12u1) ... Setting up libpython3.11:amd64 (3.11.2-6+deb12u4) ... Setting up libglx0:amd64 (1.6.0-1) ... Setting up libproj25:amd64 (9.1.1-1+b1) ... Setting up libtk8.6:amd64 (8.6.13-2) ... Setting up libopenbabel7 (3.1.1+dfsg-9+b3) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up libhwloc-plugins:amd64 (2.9.0-1) ... Setting up python3-markupsafe (2.1.2-1+b1) ... Setting up python3-tz (2022.7.1-4) ... Setting up python3-six (1.16.0-4) ... Setting up python3-roman (3.3-3) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-jinja2 (3.1.2-1) ... Setting up python3-packaging (23.0-1) ... Setting up libgl1:amd64 (1.6.0-1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-snowballstemmer (2.2.0-2) ... Setting up libpython3.11-dev:amd64 (3.11.2-6+deb12u4) ... Setting up python3-brotli (1.0.9-2+b6) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-kiwisolver (1.4.4-1+b1) ... Setting up python3-idna (3.3-1+deb12u1) ... Setting up cython3 (0.29.32-2+b1) ... Setting up libglew2.2:amd64 (2.2.0-4+b1) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-installer (0.6.0+dfsg1-1) ... Setting up python3-urllib3 (1.26.12-1) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-fastjsonschema (2.16.3-2) ... Setting up libnetcdf19:amd64 (1:4.9.0-3+b1) ... Setting up python3-pyrsistent:amd64 (0.18.1-1+b3) ... Setting up python3-lxml:amd64 (4.9.2-1+b1) ... Setting up python3-traitlets (5.5.0-1) ... Setting up python3-monty (2022.9.9+dfsg-1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-appdirs (1.4.4-3) ... Setting up python3-soupsieve (2.3.2-1) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130+deb12u1) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up libfabric1:amd64 (1.17.0-3) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.11.1-1) ... Setting up python3-attr (22.2.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-tomli (2.0.1-2) ... Setting up python3-openbabel (3.1.1+dfsg-9+b3) ... Setting up python3-py (1.11.0-1) ... Setting up libpmix2:amd64 (4.2.2-1+deb12u1) ... Setting up python3-babel (2.10.3-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-lz4 (4.0.2+dfsg-1+b2) ... Setting up python3-pbr (5.10.0-2) ... Setting up python3.11-dev (3.11.2-6+deb12u4) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-alabaster (0.7.12-1) ... Setting up libopenmpi3:amd64 (4.1.4-3+b1) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-tenacity (8.2.1-1) ... Setting up python3-ply (3.11-5) ... Setting up python3-tqdm (4.64.1-1) ... Setting up libqt5gui5:amd64 (5.15.8+dfsg-11+deb12u2) ... Setting up python3-ruamel.yaml.clib:amd64 (0.2.7-1+b2) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-tabulate (0.8.9-1) ... Setting up python3-latexcodec (2.0.1-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-yaml (6.0-3+b2) ... Setting up python3-tk:amd64 (3.11.2-3) ... Setting up libqt5widgets5:amd64 (5.15.8+dfsg-11+deb12u2) ... Setting up python3-zipp (1.0.0-6) ... Setting up python3-networkx (2.8.8-1) ... Setting up python3-wheel (0.38.4-2) ... Setting up python3-bs4 (4.11.2-2) ... Setting up libgl2ps1.4 (1.4.2+dfsg1-2) ... Setting up python3-fs (2.4.16-2) ... Setting up python3-beniget (0.4.1-3) ... Setting up libvtk9.1:amd64 (9.1.0+really9.1.0+dfsg2-5) ... Setting up python3-palettable (3.3.0-3) ... Setting up python3-pygments (2.14.0+dfsg-1) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up python3-jsonschema (4.10.3-1) ... Setting up libpython3-all-dev:amd64 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up python3-numpy (1:1.24.2-1+deb12u1) ... Setting up libvtk9.1-qt:amd64 (9.1.0+really9.1.0+dfsg2-5) ... Setting up python3-pybtex (0.24.0-3) ... Setting up python3-ruamel.yaml (0.17.21-1) ... Setting up python3-contourpy (1.0.7-1+b1) ... Setting up python3-future (0.18.2-6) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python3-spglib (2.0.2-1+b3) ... Setting up python3-jupyter-core (4.12.0-1) ... Setting up openmpi-bin (4.1.4-3+b1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up python3-uncertainties (3.1.6-1) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up python3-importlib-metadata (4.12.0-1) ... Setting up python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Setting up mpi-default-bin (1.14) ... Setting up python3-h5py-serial (3.7.0-8) ... Setting up python3-nbformat (5.5.0-1) ... Setting up python3-mpi4py (3.1.4-2+b2) ... Setting up python3-pandas (1.5.3+dfsg-2) ... Setting up python3-pep517 (0.13.0-2) ... Setting up python3-h5py (3.7.0-8) ... Setting up python3-cftime (1.6.2-3+b1) ... Setting up python3-plotly (5.4.1+dfsg-1) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-build (0.9.0-1) ... Setting up python3-netcdf4 (1.6.2-1+b1) ... Setting up python3-scipy (1.10.1-2) ... Setting up python3-vtk9 (9.1.0+really9.1.0+dfsg2-5) ... Setting up pybuild-plugin-pyproject (5.20230130+deb12u1) ... Setting up python3-pil:amd64 (9.4.0-1.1+deb12u1) ... Setting up python3-pil.imagetk:amd64 (9.4.0-1.1+deb12u1) ... Setting up python3-ufolib2 (0.14.0+dfsg1-1) ... Setting up python3-fonttools (4.38.0-1+b1) ... Setting up python3-matplotlib (3.6.3-1+b1) ... Setting up python3-ase (3.22.1-3) ... Setting up python3-phonopy (2.17.1-1) ... Processing triggers for libc-bin (2.36-9+deb12u9) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.19+dfsg-6) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.19+dfsg-6) ... Setting up python3-sphinx (5.3.0-4) ... Setting up python3-sphinx-rtd-theme (1.2.0+dfsg-1) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.31-1.2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/pymatgen-2022.11.7+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pymatgen_2022.11.7+dfsg1-11+deb12u1_source.changes dpkg-buildpackage: info: source package pymatgen dpkg-buildpackage: info: source version 2022.11.7+dfsg1-11+deb12u1 dpkg-buildpackage: info: source distribution bookworm-security dpkg-buildpackage: info: source changed by Moritz Mühlenhoff dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from pymatgen-2022.11.7+dfsg1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ fakeroot debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pymatgen-2022.11.7+dfsg1' rm -f pymatgen/optimization/linear_assignment.c pymatgen/optimization/neighbors.c pymatgen/util/coord_cython.c make[1]: Leaving directory '/build/reproducible-path/pymatgen-2022.11.7+dfsg1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build dh build --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:107: Building wheel for python3.11 with "build" module I: pybuild base:240: python3.11 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen * Building wheel... running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-311 creating build/lib.linux-x86_64-cpython-311/pymatgen creating build/lib.linux-x86_64-cpython-311/pymatgen/optimization copying pymatgen/optimization/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/optimization copying pymatgen/optimization/linear_assignment_numpy.py -> build/lib.linux-x86_64-cpython-311/pymatgen/optimization creating build/lib.linux-x86_64-cpython-311/pymatgen/io copying pymatgen/io/fiesta.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io copying pymatgen/io/cif.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io copying pymatgen/io/wannier90.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io copying pymatgen/io/gaussian.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io copying pymatgen/io/prismatic.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io copying pymatgen/io/xyz.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io copying pymatgen/io/cssr.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io copying pymatgen/io/ase.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io copying pymatgen/io/cube.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io copying pymatgen/io/nwchem.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io copying pymatgen/io/template.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io copying pymatgen/io/zeopp.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io copying pymatgen/io/core.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io copying pymatgen/io/lmto.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io copying pymatgen/io/res.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io copying pymatgen/io/shengbte.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io copying pymatgen/io/babel.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io copying pymatgen/io/packmol.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io copying pymatgen/io/pwscf.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io copying pymatgen/io/jarvis.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io copying pymatgen/io/adf.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io copying pymatgen/io/atat.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io copying pymatgen/io/phonopy.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io copying pymatgen/io/xcrysden.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io copying pymatgen/io/xr.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io creating build/lib.linux-x86_64-cpython-311/pymatgen/vis copying pymatgen/vis/plotters.py -> build/lib.linux-x86_64-cpython-311/pymatgen/vis copying pymatgen/vis/structure_chemview.py -> build/lib.linux-x86_64-cpython-311/pymatgen/vis copying pymatgen/vis/structure_vtk.py -> build/lib.linux-x86_64-cpython-311/pymatgen/vis copying pymatgen/vis/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/vis creating build/lib.linux-x86_64-cpython-311/pymatgen/util copying pymatgen/util/string.py -> build/lib.linux-x86_64-cpython-311/pymatgen/util copying pymatgen/util/io_utils.py -> build/lib.linux-x86_64-cpython-311/pymatgen/util copying pymatgen/util/testing.py -> build/lib.linux-x86_64-cpython-311/pymatgen/util copying pymatgen/util/num.py -> build/lib.linux-x86_64-cpython-311/pymatgen/util copying pymatgen/util/serialization.py -> build/lib.linux-x86_64-cpython-311/pymatgen/util copying pymatgen/util/convergence.py -> build/lib.linux-x86_64-cpython-311/pymatgen/util copying pymatgen/util/coord.py -> build/lib.linux-x86_64-cpython-311/pymatgen/util copying pymatgen/util/provenance.py -> build/lib.linux-x86_64-cpython-311/pymatgen/util copying pymatgen/util/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/util copying pymatgen/util/typing.py -> build/lib.linux-x86_64-cpython-311/pymatgen/util copying pymatgen/util/plotting.py -> build/lib.linux-x86_64-cpython-311/pymatgen/util creating build/lib.linux-x86_64-cpython-311/pymatgen/electronic_structure copying pymatgen/electronic_structure/cohp.py -> build/lib.linux-x86_64-cpython-311/pymatgen/electronic_structure copying pymatgen/electronic_structure/bandstructure.py -> build/lib.linux-x86_64-cpython-311/pymatgen/electronic_structure copying pymatgen/electronic_structure/plotter.py -> build/lib.linux-x86_64-cpython-311/pymatgen/electronic_structure copying pymatgen/electronic_structure/core.py -> build/lib.linux-x86_64-cpython-311/pymatgen/electronic_structure copying pymatgen/electronic_structure/boltztrap.py -> build/lib.linux-x86_64-cpython-311/pymatgen/electronic_structure copying pymatgen/electronic_structure/boltztrap2.py -> build/lib.linux-x86_64-cpython-311/pymatgen/electronic_structure copying pymatgen/electronic_structure/dos.py -> build/lib.linux-x86_64-cpython-311/pymatgen/electronic_structure copying pymatgen/electronic_structure/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/electronic_structure creating build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/thermochemistry.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/reaction_calculator.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/energy_models.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/substrate_analyzer.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/disorder.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/functional_groups.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/surface_analysis.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/chempot_diagram.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/cost.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/adsorption.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/ewald.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/eos.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/piezo.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/pourbaix_diagram.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/molecule_structure_comparator.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/dimensionality.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/interface_reactions.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/bond_valence.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/structure_matcher.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/graphs.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/local_env.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/fragmenter.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/nmr.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/molecule_matcher.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/phase_diagram.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/quasiharmonic.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/path_finder.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/piezo_sensitivity.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/structure_analyzer.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/bond_dissociation.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/xps.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/excitation.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/transition_state.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/wulff.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/interface.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/prototypes.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/hhi.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis creating build/lib.linux-x86_64-cpython-311/pymatgen/entries copying pymatgen/entries/exp_entries.py -> build/lib.linux-x86_64-cpython-311/pymatgen/entries copying pymatgen/entries/mixing_scheme.py -> build/lib.linux-x86_64-cpython-311/pymatgen/entries copying pymatgen/entries/compatibility.py -> build/lib.linux-x86_64-cpython-311/pymatgen/entries copying pymatgen/entries/correction_calculator.py -> build/lib.linux-x86_64-cpython-311/pymatgen/entries copying pymatgen/entries/computed_entries.py -> build/lib.linux-x86_64-cpython-311/pymatgen/entries copying pymatgen/entries/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/entries copying pymatgen/entries/entry_tools.py -> build/lib.linux-x86_64-cpython-311/pymatgen/entries creating build/lib.linux-x86_64-cpython-311/pymatgen/apps copying pymatgen/apps/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/apps creating build/lib.linux-x86_64-cpython-311/pymatgen/symmetry copying pymatgen/symmetry/groups.py -> build/lib.linux-x86_64-cpython-311/pymatgen/symmetry copying pymatgen/symmetry/site_symmetries.py -> build/lib.linux-x86_64-cpython-311/pymatgen/symmetry copying pymatgen/symmetry/settings.py -> build/lib.linux-x86_64-cpython-311/pymatgen/symmetry copying pymatgen/symmetry/bandstructure.py -> build/lib.linux-x86_64-cpython-311/pymatgen/symmetry copying pymatgen/symmetry/analyzer.py -> build/lib.linux-x86_64-cpython-311/pymatgen/symmetry copying pymatgen/symmetry/structure.py -> build/lib.linux-x86_64-cpython-311/pymatgen/symmetry copying pymatgen/symmetry/maggroups.py -> build/lib.linux-x86_64-cpython-311/pymatgen/symmetry copying pymatgen/symmetry/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/symmetry copying pymatgen/symmetry/kpath.py -> build/lib.linux-x86_64-cpython-311/pymatgen/symmetry creating build/lib.linux-x86_64-cpython-311/pymatgen/core copying pymatgen/core/surface.py -> build/lib.linux-x86_64-cpython-311/pymatgen/core copying pymatgen/core/composition.py -> build/lib.linux-x86_64-cpython-311/pymatgen/core copying pymatgen/core/bonds.py -> build/lib.linux-x86_64-cpython-311/pymatgen/core copying pymatgen/core/structure.py -> build/lib.linux-x86_64-cpython-311/pymatgen/core copying pymatgen/core/operations.py -> build/lib.linux-x86_64-cpython-311/pymatgen/core copying pymatgen/core/ion.py -> build/lib.linux-x86_64-cpython-311/pymatgen/core copying pymatgen/core/trajectory.py -> build/lib.linux-x86_64-cpython-311/pymatgen/core copying pymatgen/core/molecular_orbitals.py -> build/lib.linux-x86_64-cpython-311/pymatgen/core copying pymatgen/core/xcfunc.py -> build/lib.linux-x86_64-cpython-311/pymatgen/core copying pymatgen/core/spectrum.py -> build/lib.linux-x86_64-cpython-311/pymatgen/core copying pymatgen/core/tensors.py -> build/lib.linux-x86_64-cpython-311/pymatgen/core copying pymatgen/core/sites.py -> build/lib.linux-x86_64-cpython-311/pymatgen/core copying pymatgen/core/units.py -> build/lib.linux-x86_64-cpython-311/pymatgen/core copying pymatgen/core/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/core copying pymatgen/core/libxcfunc.py -> build/lib.linux-x86_64-cpython-311/pymatgen/core copying pymatgen/core/lattice.py -> build/lib.linux-x86_64-cpython-311/pymatgen/core copying pymatgen/core/periodic_table.py -> build/lib.linux-x86_64-cpython-311/pymatgen/core copying pymatgen/core/interface.py -> build/lib.linux-x86_64-cpython-311/pymatgen/core creating build/lib.linux-x86_64-cpython-311/pymatgen/command_line copying pymatgen/command_line/bader_caller.py -> build/lib.linux-x86_64-cpython-311/pymatgen/command_line copying pymatgen/command_line/chargemol_caller.py -> build/lib.linux-x86_64-cpython-311/pymatgen/command_line copying pymatgen/command_line/vampire_caller.py -> build/lib.linux-x86_64-cpython-311/pymatgen/command_line copying pymatgen/command_line/enumlib_caller.py -> build/lib.linux-x86_64-cpython-311/pymatgen/command_line copying pymatgen/command_line/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/command_line copying pymatgen/command_line/critic2_caller.py -> build/lib.linux-x86_64-cpython-311/pymatgen/command_line copying pymatgen/command_line/mcsqs_caller.py -> build/lib.linux-x86_64-cpython-311/pymatgen/command_line copying pymatgen/command_line/gulp_caller.py -> build/lib.linux-x86_64-cpython-311/pymatgen/command_line creating build/lib.linux-x86_64-cpython-311/pymatgen/phonon copying pymatgen/phonon/bandstructure.py -> build/lib.linux-x86_64-cpython-311/pymatgen/phonon copying pymatgen/phonon/thermal_displacements.py -> build/lib.linux-x86_64-cpython-311/pymatgen/phonon copying pymatgen/phonon/plotter.py -> build/lib.linux-x86_64-cpython-311/pymatgen/phonon copying pymatgen/phonon/gruneisen.py -> build/lib.linux-x86_64-cpython-311/pymatgen/phonon copying pymatgen/phonon/dos.py -> build/lib.linux-x86_64-cpython-311/pymatgen/phonon copying pymatgen/phonon/ir_spectra.py -> build/lib.linux-x86_64-cpython-311/pymatgen/phonon copying pymatgen/phonon/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/phonon creating build/lib.linux-x86_64-cpython-311/pymatgen/cli copying pymatgen/cli/pmg_potcar.py -> build/lib.linux-x86_64-cpython-311/pymatgen/cli copying pymatgen/cli/pmg.py -> build/lib.linux-x86_64-cpython-311/pymatgen/cli copying pymatgen/cli/gaussian_analyzer.py -> build/lib.linux-x86_64-cpython-311/pymatgen/cli copying pymatgen/cli/pmg_structure.py -> build/lib.linux-x86_64-cpython-311/pymatgen/cli copying pymatgen/cli/pmg_query.py -> build/lib.linux-x86_64-cpython-311/pymatgen/cli copying pymatgen/cli/pmg_analyze.py -> build/lib.linux-x86_64-cpython-311/pymatgen/cli copying pymatgen/cli/feff_plot_dos.py -> build/lib.linux-x86_64-cpython-311/pymatgen/cli copying pymatgen/cli/get_environment.py -> build/lib.linux-x86_64-cpython-311/pymatgen/cli copying pymatgen/cli/feff_plot_cross_section.py -> build/lib.linux-x86_64-cpython-311/pymatgen/cli copying pymatgen/cli/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/cli copying pymatgen/cli/pmg_plot.py -> build/lib.linux-x86_64-cpython-311/pymatgen/cli copying pymatgen/cli/pmg_config.py -> build/lib.linux-x86_64-cpython-311/pymatgen/cli creating build/lib.linux-x86_64-cpython-311/pymatgen/alchemy copying pymatgen/alchemy/transmuters.py -> build/lib.linux-x86_64-cpython-311/pymatgen/alchemy copying pymatgen/alchemy/materials.py -> build/lib.linux-x86_64-cpython-311/pymatgen/alchemy copying pymatgen/alchemy/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/alchemy copying pymatgen/alchemy/filters.py -> build/lib.linux-x86_64-cpython-311/pymatgen/alchemy creating build/lib.linux-x86_64-cpython-311/pymatgen/transformations copying pymatgen/transformations/advanced_transformations.py -> build/lib.linux-x86_64-cpython-311/pymatgen/transformations copying pymatgen/transformations/standard_transformations.py -> build/lib.linux-x86_64-cpython-311/pymatgen/transformations copying pymatgen/transformations/transformation_abc.py -> build/lib.linux-x86_64-cpython-311/pymatgen/transformations copying pymatgen/transformations/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/transformations copying pymatgen/transformations/site_transformations.py -> build/lib.linux-x86_64-cpython-311/pymatgen/transformations creating build/lib.linux-x86_64-cpython-311/pymatgen/ext copying pymatgen/ext/cod.py -> build/lib.linux-x86_64-cpython-311/pymatgen/ext copying pymatgen/ext/optimade.py -> build/lib.linux-x86_64-cpython-311/pymatgen/ext copying pymatgen/ext/matproj.py -> build/lib.linux-x86_64-cpython-311/pymatgen/ext creating build/lib.linux-x86_64-cpython-311/pymatgen/io/xtb copying pymatgen/io/xtb/outputs.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/xtb copying pymatgen/io/xtb/inputs.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/xtb copying pymatgen/io/xtb/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/xtb creating build/lib.linux-x86_64-cpython-311/pymatgen/io/qchem copying pymatgen/io/qchem/outputs.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/qchem copying pymatgen/io/qchem/inputs.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/qchem copying pymatgen/io/qchem/sets.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/qchem copying pymatgen/io/qchem/utils.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/qchem copying pymatgen/io/qchem/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/qchem creating build/lib.linux-x86_64-cpython-311/pymatgen/io/vasp copying pymatgen/io/vasp/help.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/vasp copying pymatgen/io/vasp/outputs.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/vasp copying pymatgen/io/vasp/inputs.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/vasp copying pymatgen/io/vasp/sets.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/vasp copying pymatgen/io/vasp/optics.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/vasp copying pymatgen/io/vasp/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/vasp creating build/lib.linux-x86_64-cpython-311/pymatgen/io/abinit copying pymatgen/io/abinit/variable.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/abinit copying pymatgen/io/abinit/pseudos.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/abinit copying pymatgen/io/abinit/netcdf.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/abinit copying pymatgen/io/abinit/inputs.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/abinit copying pymatgen/io/abinit/abiobjects.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/abinit copying pymatgen/io/abinit/abitimer.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/abinit copying pymatgen/io/abinit/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/abinit creating build/lib.linux-x86_64-cpython-311/pymatgen/io/exciting copying pymatgen/io/exciting/inputs.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/exciting copying pymatgen/io/exciting/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/exciting creating build/lib.linux-x86_64-cpython-311/pymatgen/io/feff copying pymatgen/io/feff/outputs.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/feff copying pymatgen/io/feff/inputs.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/feff copying pymatgen/io/feff/sets.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/feff copying pymatgen/io/feff/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/feff creating build/lib.linux-x86_64-cpython-311/pymatgen/io/lammps copying pymatgen/io/lammps/data.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/lammps copying pymatgen/io/lammps/outputs.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/lammps copying pymatgen/io/lammps/inputs.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/lammps copying pymatgen/io/lammps/utils.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/lammps copying pymatgen/io/lammps/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/lammps creating build/lib.linux-x86_64-cpython-311/pymatgen/io/cp2k copying pymatgen/io/cp2k/outputs.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/cp2k copying pymatgen/io/cp2k/inputs.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/cp2k copying pymatgen/io/cp2k/sets.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/cp2k copying pymatgen/io/cp2k/utils.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/cp2k copying pymatgen/io/cp2k/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/cp2k creating build/lib.linux-x86_64-cpython-311/pymatgen/io/lobster copying pymatgen/io/lobster/outputs.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/lobster copying pymatgen/io/lobster/inputs.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/lobster copying pymatgen/io/lobster/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/lobster copying pymatgen/io/lobster/lobsterenv.py -> build/lib.linux-x86_64-cpython-311/pymatgen/io/lobster creating build/lib.linux-x86_64-cpython-311/pymatgen/analysis/diffraction copying pymatgen/analysis/diffraction/xrd.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/diffraction copying pymatgen/analysis/diffraction/core.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/diffraction copying pymatgen/analysis/diffraction/tem.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/diffraction copying pymatgen/analysis/diffraction/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/diffraction copying pymatgen/analysis/diffraction/neutron.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/diffraction creating build/lib.linux-x86_64-cpython-311/pymatgen/analysis/magnetism copying pymatgen/analysis/magnetism/analyzer.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/magnetism copying pymatgen/analysis/magnetism/jahnteller.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/magnetism copying pymatgen/analysis/magnetism/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/magnetism copying pymatgen/analysis/magnetism/heisenberg.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/magnetism creating build/lib.linux-x86_64-cpython-311/pymatgen/analysis/topological copying pymatgen/analysis/topological/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/topological copying pymatgen/analysis/topological/spillage.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/topological creating build/lib.linux-x86_64-cpython-311/pymatgen/analysis/elasticity copying pymatgen/analysis/elasticity/stress.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/elasticity copying pymatgen/analysis/elasticity/strain.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/elasticity copying pymatgen/analysis/elasticity/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/elasticity copying pymatgen/analysis/elasticity/elastic.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/elasticity creating build/lib.linux-x86_64-cpython-311/pymatgen/analysis/interfaces copying pymatgen/analysis/interfaces/substrate_analyzer.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/interfaces copying pymatgen/analysis/interfaces/coherent_interfaces.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/interfaces copying pymatgen/analysis/interfaces/zsl.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/interfaces copying pymatgen/analysis/interfaces/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/interfaces creating build/lib.linux-x86_64-cpython-311/pymatgen/analysis/ferroelectricity copying pymatgen/analysis/ferroelectricity/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/ferroelectricity copying pymatgen/analysis/ferroelectricity/polarization.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/ferroelectricity creating build/lib.linux-x86_64-cpython-311/pymatgen/analysis/structure_prediction copying pymatgen/analysis/structure_prediction/volume_predictor.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/structure_prediction copying pymatgen/analysis/structure_prediction/substitutor.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/structure_prediction copying pymatgen/analysis/structure_prediction/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/structure_prediction copying pymatgen/analysis/structure_prediction/substitution_probability.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/structure_prediction copying pymatgen/analysis/structure_prediction/dopant_predictor.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/structure_prediction creating build/lib.linux-x86_64-cpython-311/pymatgen/analysis/solar copying pymatgen/analysis/solar/slme.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/solar copying pymatgen/analysis/solar/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/solar creating build/lib.linux-x86_64-cpython-311/pymatgen/analysis/xas copying pymatgen/analysis/xas/spectrum.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/xas copying pymatgen/analysis/xas/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/xas creating build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv copying pymatgen/analysis/chemenv/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv creating build/lib.linux-x86_64-cpython-311/pymatgen/analysis/gb copying pymatgen/analysis/gb/grain.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/gb copying pymatgen/analysis/gb/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/gb creating build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/connectivity copying pymatgen/analysis/chemenv/connectivity/structure_connectivity.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/connectivity copying pymatgen/analysis/chemenv/connectivity/environment_nodes.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/connectivity copying pymatgen/analysis/chemenv/connectivity/connected_components.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/connectivity copying pymatgen/analysis/chemenv/connectivity/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/connectivity copying pymatgen/analysis/chemenv/connectivity/connectivity_finder.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/connectivity creating build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/utils copying pymatgen/analysis/chemenv/utils/scripts_utils.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/utils copying pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/utils copying pymatgen/analysis/chemenv/utils/chemenv_config.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/utils copying pymatgen/analysis/chemenv/utils/func_utils.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/utils copying pymatgen/analysis/chemenv/utils/chemenv_errors.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/utils copying pymatgen/analysis/chemenv/utils/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/utils copying pymatgen/analysis/chemenv/utils/defs_utils.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/utils copying pymatgen/analysis/chemenv/utils/graph_utils.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/utils copying pymatgen/analysis/chemenv/utils/math_utils.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/utils creating build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments copying pymatgen/analysis/chemenv/coordination_environments/structure_environments.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments copying pymatgen/analysis/chemenv/coordination_environments/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments copying pymatgen/analysis/chemenv/coordination_environments/chemenv_strategies.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments copying pymatgen/analysis/chemenv/coordination_environments/voronoi.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments creating build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files creating build/lib.linux-x86_64-cpython-311/pymatgen/apps/battery copying pymatgen/apps/battery/analyzer.py -> build/lib.linux-x86_64-cpython-311/pymatgen/apps/battery copying pymatgen/apps/battery/plotter.py -> build/lib.linux-x86_64-cpython-311/pymatgen/apps/battery copying pymatgen/apps/battery/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/apps/battery copying pymatgen/apps/battery/insertion_battery.py -> build/lib.linux-x86_64-cpython-311/pymatgen/apps/battery copying pymatgen/apps/battery/conversion_battery.py -> build/lib.linux-x86_64-cpython-311/pymatgen/apps/battery copying pymatgen/apps/battery/battery_abc.py -> build/lib.linux-x86_64-cpython-311/pymatgen/apps/battery creating build/lib.linux-x86_64-cpython-311/pymatgen/apps/borg copying pymatgen/apps/borg/queen.py -> build/lib.linux-x86_64-cpython-311/pymatgen/apps/borg copying pymatgen/apps/borg/__init__.py -> build/lib.linux-x86_64-cpython-311/pymatgen/apps/borg copying pymatgen/apps/borg/hive.py -> build/lib.linux-x86_64-cpython-311/pymatgen/apps/borg copying pymatgen/vis/ElementColorSchemes.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/vis creating build/lib.linux-x86_64-cpython-311/pymatgen/util/structures copying pymatgen/util/structures/TiO2.json -> build/lib.linux-x86_64-cpython-311/pymatgen/util/structures copying pymatgen/util/structures/NaFePO4.json -> build/lib.linux-x86_64-cpython-311/pymatgen/util/structures copying pymatgen/util/structures/Sn.json -> build/lib.linux-x86_64-cpython-311/pymatgen/util/structures copying pymatgen/util/structures/CsCl.json -> build/lib.linux-x86_64-cpython-311/pymatgen/util/structures copying pymatgen/util/structures/Li2O.json -> build/lib.linux-x86_64-cpython-311/pymatgen/util/structures copying pymatgen/util/structures/He_BCC.json -> build/lib.linux-x86_64-cpython-311/pymatgen/util/structures copying pymatgen/util/structures/Si.json -> build/lib.linux-x86_64-cpython-311/pymatgen/util/structures copying pymatgen/util/structures/Si_SiO2_Interface.json -> build/lib.linux-x86_64-cpython-311/pymatgen/util/structures copying pymatgen/util/structures/K2O2.json -> build/lib.linux-x86_64-cpython-311/pymatgen/util/structures copying pymatgen/util/structures/La2CoO4F.json -> build/lib.linux-x86_64-cpython-311/pymatgen/util/structures copying pymatgen/util/structures/Li3V2(PO4)3.json -> build/lib.linux-x86_64-cpython-311/pymatgen/util/structures copying pymatgen/util/structures/VO2.json -> build/lib.linux-x86_64-cpython-311/pymatgen/util/structures copying pymatgen/util/structures/Li2O2.json -> build/lib.linux-x86_64-cpython-311/pymatgen/util/structures copying pymatgen/util/structures/SiO2.json -> build/lib.linux-x86_64-cpython-311/pymatgen/util/structures copying pymatgen/util/structures/TlBiSe2.json -> build/lib.linux-x86_64-cpython-311/pymatgen/util/structures copying pymatgen/util/structures/LiFePO4.json -> build/lib.linux-x86_64-cpython-311/pymatgen/util/structures copying pymatgen/util/structures/SrTiO3.json -> build/lib.linux-x86_64-cpython-311/pymatgen/util/structures copying pymatgen/util/structures/Graphite.json -> build/lib.linux-x86_64-cpython-311/pymatgen/util/structures copying pymatgen/util/structures/Pb2TiZrO6.json -> build/lib.linux-x86_64-cpython-311/pymatgen/util/structures copying pymatgen/util/structures/Li10GeP2S12.json -> build/lib.linux-x86_64-cpython-311/pymatgen/util/structures copying pymatgen/util/structures/BaNiO3.json -> build/lib.linux-x86_64-cpython-311/pymatgen/util/structures copying pymatgen/util/plotly_pd_layouts.json -> build/lib.linux-x86_64-cpython-311/pymatgen/util copying pymatgen/util/plotly_chempot_layouts.json -> build/lib.linux-x86_64-cpython-311/pymatgen/util copying pymatgen/util/plotly_interface_rxn_layouts.json -> build/lib.linux-x86_64-cpython-311/pymatgen/util copying pymatgen/analysis/bvparam_1991.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/cn_opt_params.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/op_params.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/vesta_cutoffs.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/bonds_jmol_ob.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/icsd_bv.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/ionic_radii.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/aflow_prototypes.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/atomic_subshell_photoionization_cross_sections.csv -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/costdb_elements.csv -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/analysis/hhi_data.csv -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis copying pymatgen/entries/exp_compounds.json.gz -> build/lib.linux-x86_64-cpython-311/pymatgen/entries copying pymatgen/entries/calc_compounds.json.gz -> build/lib.linux-x86_64-cpython-311/pymatgen/entries copying pymatgen/entries/MP2020Compatibility.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/entries copying pymatgen/entries/MITCompatibility.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/entries copying pymatgen/entries/MPCompatibility.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/entries creating build/lib.linux-x86_64-cpython-311/pymatgen/entries/data copying pymatgen/entries/data/nist_gas_gf.json -> build/lib.linux-x86_64-cpython-311/pymatgen/entries/data copying pymatgen/entries/data/g_els.json -> build/lib.linux-x86_64-cpython-311/pymatgen/entries/data copying pymatgen/symmetry/symm_ops.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/symmetry copying pymatgen/symmetry/symm_data.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/symmetry copying pymatgen/symmetry/symm_data.json -> build/lib.linux-x86_64-cpython-311/pymatgen/symmetry copying pymatgen/symmetry/symm_ops.json -> build/lib.linux-x86_64-cpython-311/pymatgen/symmetry copying pymatgen/symmetry/symm_data_magnetic.sqlite -> build/lib.linux-x86_64-cpython-311/pymatgen/symmetry copying pymatgen/core/py.typed -> build/lib.linux-x86_64-cpython-311/pymatgen/core copying pymatgen/core/func_groups.json -> build/lib.linux-x86_64-cpython-311/pymatgen/core copying pymatgen/core/libxc_docs.json -> build/lib.linux-x86_64-cpython-311/pymatgen/core copying pymatgen/core/quad_data.json -> build/lib.linux-x86_64-cpython-311/pymatgen/core copying pymatgen/core/reconstructions_archive.json -> build/lib.linux-x86_64-cpython-311/pymatgen/core copying pymatgen/core/periodic_table.json -> build/lib.linux-x86_64-cpython-311/pymatgen/core copying pymatgen/core/bond_lengths.json -> build/lib.linux-x86_64-cpython-311/pymatgen/core copying pymatgen/command_line/OxideTersoffPotentials -> build/lib.linux-x86_64-cpython-311/pymatgen/command_line copying pymatgen/io/vasp/vdW_parameters.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/io/vasp copying pymatgen/io/vasp/VASPIncarBase.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/io/vasp copying pymatgen/io/vasp/MPHSERelaxSet.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/io/vasp copying pymatgen/io/vasp/MITRelaxSet.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/io/vasp copying pymatgen/io/vasp/MPRelaxSet.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/io/vasp copying pymatgen/io/vasp/MPAbsorptionSet.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/io/vasp copying pymatgen/io/vasp/MVLGWSet.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/io/vasp copying pymatgen/io/vasp/MPSCANRelaxSet.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/io/vasp copying pymatgen/io/vasp/MVLRelax52Set.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/io/vasp copying pymatgen/io/vasp/vasp_potcar_pymatgen_hashes.json -> build/lib.linux-x86_64-cpython-311/pymatgen/io/vasp copying pymatgen/io/vasp/incar_parameters.json -> build/lib.linux-x86_64-cpython-311/pymatgen/io/vasp copying pymatgen/io/vasp/vasp_potcar_file_hashes.json -> build/lib.linux-x86_64-cpython-311/pymatgen/io/vasp copying pymatgen/io/feff/MPEXELFSSet.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/io/feff copying pymatgen/io/feff/MPELNESSet.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/io/feff copying pymatgen/io/feff/MPXANESSet.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/io/feff copying pymatgen/io/feff/MPEXAFSSet.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/io/feff copying pymatgen/io/lammps/CoeffsDataType.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/io/lammps creating build/lib.linux-x86_64-cpython-311/pymatgen/io/lammps/templates copying pymatgen/io/lammps/templates/md.txt -> build/lib.linux-x86_64-cpython-311/pymatgen/io/lammps/templates copying pymatgen/io/cp2k/settings.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/io/cp2k creating build/lib.linux-x86_64-cpython-311/pymatgen/io/lobster/lobster_basis copying pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_standard.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/io/lobster/lobster_basis copying pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_max.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/io/lobster/lobster_basis copying pymatgen/io/lobster/lobster_basis/BASIS_PBE_54_min.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/io/lobster/lobster_basis copying pymatgen/analysis/diffraction/atomic_scattering_params.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/diffraction copying pymatgen/analysis/diffraction/neutron_scattering_length.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/diffraction copying pymatgen/analysis/magnetism/default_magmoms.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/magnetism copying pymatgen/analysis/structure_prediction/DLS_bond_params.yaml -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/structure_prediction creating build/lib.linux-x86_64-cpython-311/pymatgen/analysis/structure_prediction/data copying pymatgen/analysis/structure_prediction/data/pair_correlation.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/structure_prediction/data copying pymatgen/analysis/structure_prediction/data/lambda.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/structure_prediction/data copying pymatgen/analysis/solar/am1.5G.dat -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/solar copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#10.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#11.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBT#8.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TI#9.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HP#12.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/FO#7.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TS#3.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ET#7.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#8.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#6.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SC#12.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/CO#11.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/C#12.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#5.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBSA#10.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_1#9.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_3#8.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/L#2.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TL#3.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TBT#8.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/H#10.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HA#12.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#1.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#4.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#11.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/ST#7.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/AC#12.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT#12.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DDPN#8.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PBP#12.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#5.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PA#10.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#10.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HD#9.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_1#9.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_1#8.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PCPA#11.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_3#9.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#20.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SH#13.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/T#5.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#4.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SBSA#10.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/O#6_explicit.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_2#9.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TT_3#9.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DD#8.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TO_2#9.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SA#8.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TC#9.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/HB#8.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#4.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PB#7.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_2#10.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/A#2.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/S#12.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/TY#3.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/I#12.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/DI#11.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SMA#9.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BS_1#10.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SY#4.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/BO_2#8.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/SS#9.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/PP#6.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/MI#10.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files copying pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files/allcg.txt -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries_files creating build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/strategy_files copying pymatgen/analysis/chemenv/coordination_environments/strategy_files/ImprovedConfidenceCutoffDefaultParameters.json -> build/lib.linux-x86_64-cpython-311/pymatgen/analysis/chemenv/coordination_environments/strategy_files running build_ext cythoning pymatgen/optimization/linear_assignment.pyx to pymatgen/optimization/linear_assignment.c INFO: Disabling color, you really want to install colorlog. Disabling color, you really want to install colorlog. /usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar. if not hasattr(numpy, method): /usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar. obj = getattr(themodule, elem) warning: pymatgen/util/coord_cython.pyx:217:25: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: pymatgen/util/coord_cython.pyx:266:41: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: no files found matching 'requirements*.txt' warning: no previously-included files matching '*/*/tests' found under directory 'pymatgen' warning: no previously-included files matching '*/*/*/tests' found under directory 'pymatgen' warning: no previously-included files matching '*/*/*/*/tests' found under directory 'pymatgen' warning: no previously-included files matching '*/*/*/*/*/tests' found under directory 'pymatgen' no previously-included directories found matching 'test_files' Successfully built pymatgen-2022.11.7-cp311-cp311-linux_x86_64.whl I: pybuild plugin_pyproject:119: Unpacking wheel built for python3.11 with "installer" module debian/rules execute_after_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/pymatgen-2022.11.7+dfsg1' PYTHONPATH=/build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build \ make -C docs_rst html BUILDDIR=/build/reproducible-path/pymatgen-2022.11.7+dfsg1/build/html make[2]: Entering directory '/build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst' sphinx-build -b html -d /build/reproducible-path/pymatgen-2022.11.7+dfsg1/build/html/doctrees . /build/reproducible-path/pymatgen-2022.11.7+dfsg1/build/html/html Running Sphinx v5.3.0 making output directory... done WARNING: favicon file 'favicon.ico' does not exist building [mo]: targets for 0 po files that are out of date building [html]: targets for 285 source files that are out of date updating environment: [new config] 285 added, 0 changed, 0 removed reading sources... 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These imports will break in Pymatgen 2023 return _bootstrap._gcd_import(name[level:], package, level) reading sources... [ 23%] pymatgen.analysis.interface_reactions reading sources... [ 23%] pymatgen.analysis.interfaces reading sources... [ 24%] pymatgen.analysis.interfaces.coherent_interfaces reading sources... [ 24%] pymatgen.analysis.interfaces.substrate_analyzer reading sources... [ 24%] pymatgen.analysis.interfaces.zsl reading sources... [ 25%] pymatgen.analysis.local_env reading sources... [ 25%] pymatgen.analysis.magnetism reading sources... [ 25%] pymatgen.analysis.magnetism.analyzer reading sources... [ 26%] pymatgen.analysis.magnetism.heisenberg reading sources... [ 26%] pymatgen.analysis.magnetism.jahnteller reading sources... [ 27%] pymatgen.analysis.molecule_matcher reading sources... [ 27%] pymatgen.analysis.molecule_structure_comparator reading sources... [ 27%] pymatgen.analysis.nmr reading sources... 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[100%] usage /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/change_log.rst:877: WARNING: Bullet list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/change_log.rst:1885: WARNING: Title underline too short. v3.0.10 ------ /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/change_log.rst:1885: WARNING: Title underline too short. v3.0.10 ------ /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/change_log.rst:1918: WARNING: Mismatch: both interpreted text role prefix and reference suffix. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/change_log.rst:1918: WARNING: Mismatch: both interpreted text role prefix and reference suffix. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/change_log.rst:1403: ERROR: Unknown target name: "pmg". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/contributing.rst:7: WARNING: Literal block expected; none found. introduction.rst:146: CRITICAL: Title level inconsistent: Via conda (recommended) ~~~~~~~~~~~~~~~~~~~~~~~ introduction.rst:169: CRITICAL: Title level inconsistent: Via pip ~~~~~~~ introduction.rst:209: CRITICAL: Title level inconsistent: Shared cluster installation ~~~~~~~~~~~~~~~~~~~~~~~~~~~ introduction.rst:244: CRITICAL: Title level inconsistent: Quick start ~~~~~~~~~~~ introduction.rst:374: CRITICAL: Title level inconsistent: API documentation ~~~~~~~~~~~~~~~~~ introduction.rst:380: CRITICAL: Title level inconsistent: More resources ~~~~~~~~~~~~~~ introduction.rst:389: CRITICAL: Title level inconsistent: pmg - Command line tool ~~~~~~~~~~~~~~~~~~~~~~~ introduction.rst:448: CRITICAL: Title level inconsistent: Add-ons ~~~~~~~ introduction.rst:8: WARNING: Duplicate explicit target name: "contributing page". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/introduction.rst:146: CRITICAL: Title level inconsistent: Via conda (recommended) ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/introduction.rst:169: CRITICAL: Title level inconsistent: Via pip ~~~~~~~ /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/introduction.rst:209: CRITICAL: Title level inconsistent: Shared cluster installation ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/introduction.rst:244: CRITICAL: Title level inconsistent: Quick start ~~~~~~~~~~~ /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/introduction.rst:374: CRITICAL: Title level inconsistent: API documentation ~~~~~~~~~~~~~~~~~ /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/introduction.rst:380: CRITICAL: Title level inconsistent: More resources ~~~~~~~~~~~~~~ /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/introduction.rst:389: CRITICAL: Title level inconsistent: pmg - Command line tool ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/introduction.rst:448: CRITICAL: Title level inconsistent: Add-ons ~~~~~~~ /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/introduction.rst:8: WARNING: Duplicate explicit target name: "contributing page". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/alchemy/materials.py:docstring of pymatgen.alchemy.materials:1: WARNING: Inline strong start-string without end-string. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/adsorption.py:docstring of pymatgen.analysis.adsorption.AdsorbateSiteFinder.find_adsorption_sites:17: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/adsorption.py:docstring of pymatgen.analysis.adsorption.AdsorbateSiteFinder:6: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/connectivity/connected_components.py:docstring of pymatgen.analysis.chemenv.connectivity.connected_components.ConnectedComponent.coordination_sequence:24: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/connectivity/connected_components.py:docstring of pymatgen.analysis.chemenv.connectivity.connected_components.ConnectedComponent.as_dict:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/connectivity/connected_components.py:docstring of pymatgen.analysis.chemenv.connectivity.connected_components.ConnectedComponent.as_dict:1: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/connectivity/connected_components.py:docstring of pymatgen.analysis.chemenv.connectivity.connected_components.ConnectedComponent.coordination_sequence:33: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/connectivity/connectivity_finder.py:docstring of pymatgen.analysis.chemenv.connectivity.connectivity_finder.ConnectivityFinder:1: WARNING: Field list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/connectivity/connectivity_finder.py:docstring of pymatgen.analysis.chemenv.connectivity.connectivity_finder:2: WARNING: Field list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/chemenv_strategies.py:docstring of pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.AbstractChemenvStrategy:6: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/chemenv_strategies.py:docstring of pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.AbstractChemenvStrategy.get_site_coordination_environment:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/chemenv_strategies.py:docstring of pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.AbstractChemenvStrategy.get_site_coordination_environments:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/chemenv_strategies.py:docstring of pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.AbstractChemenvStrategy.get_site_coordination_environments_fractions:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/chemenv_strategies.py:docstring of pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.AbstractChemenvStrategy.get_site_neighbors:4: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/chemenv_strategies.py:docstring of pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies:2: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/chemenv_strategies.py:docstring of pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.MultiWeightsChemenvStrategy:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/chemenv_strategies.py:docstring of pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.SimpleAbundanceChemenvStrategy:7: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/chemenv_strategies.py:docstring of pymatgen.analysis.chemenv.coordination_environments.chemenv_strategies.WeightedNbSetChemenvStrategy:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometries:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometries:5: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometries.SeparationPlane.safe_separation_permutations:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometries.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometries:3: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometry_finder.AbstractGeometry:8: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometry_finder:8: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometry_finder.LocalGeometryFinder.compute_structure_environments:8: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometry_finder:6: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometry_finder.LocalGeometryFinder.coordination_geometry_symmetry_measures:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometry_finder:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometry_finder.LocalGeometryFinder.coordination_geometry_symmetry_measures_sepplane_optim:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometry_finder:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometry_finder.LocalGeometryFinder.setup_parameters:7: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometry_finder:5: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometry_finder.find_rotation:4: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometry_finder:2: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometry_finder.find_scaling_factor:4: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometry_finder:2: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometry_finder.symmetry_measure:4: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py:docstring of pymatgen.analysis.chemenv.coordination_environments.coordination_geometry_finder:3: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py:docstring of pymatgen.analysis.chemenv.coordination_environments.structure_environments:2: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py:docstring of pymatgen.analysis.chemenv.coordination_environments.structure_environments.ChemicalEnvironments:1: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py:docstring of pymatgen.analysis.chemenv.coordination_environments.structure_environments.StructureEnvironments.NeighborsSet.voronoi_grid_surface_points:15: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/coordination_environments/structure_environments.py:docstring of pymatgen.analysis.chemenv.coordination_environments.structure_environments.ChemicalEnvironments:5: WARNING: Block quote ends without a blank line; unexpected unindent. WARNING: autodoc: failed to import module 'chemenv_config' from module 'pymatgen.analysis.chemenv.utils'; the following exception was raised: No module named 'mp_api' /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.Plane.distances:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.Plane.distances_indices_groups:9: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.Plane:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.Plane.distances_indices_sorted:7: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.Plane.indices_separate:6: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.Plane:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.collinear:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.Plane:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.Plane.TEST_2D_POINTS:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.Plane.TEST_2D_POINTS:1: WARNING: Inline substitution_reference start-string without end-string. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.Plane.TEST_2D_POINTS:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.Plane.TEST_2D_POINTS:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.Plane.a:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.Plane.a:1: WARNING: Inline substitution_reference start-string without end-string. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.vectorsToMatrix:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.collinear:5: ERROR: Undefined substitution referenced: "p2-p1". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/chemenv/utils/coordination_geometry_utils.py:docstring of pymatgen.analysis.chemenv.utils.coordination_geometry_utils.collinear:5: ERROR: Undefined substitution referenced: "p2-p1". WARNING: autodoc: failed to import module 'scripts_utils' from module 'pymatgen.analysis.chemenv.utils'; the following exception was raised: No module named 'mp_api' /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/diffraction/tem.py:docstring of pymatgen.analysis.diffraction.tem.TEMCalculator:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/diffraction/tem.py:docstring of pymatgen.analysis.diffraction.tem.TEMCalculator:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/diffraction/tem.py:docstring of pymatgen.analysis.diffraction.tem:1: WARNING: Inline substitution_reference start-string without end-string. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/diffraction/tem.py:docstring of pymatgen.analysis.diffraction.tem:1: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/dimensionality.py:docstring of pymatgen.analysis.dimensionality.get_dimensionality_cheon:29: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/elasticity/elastic.py:docstring of pymatgen.analysis.elasticity.elastic.ElasticTensor.from_independent_strains:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/elasticity/elastic.py:docstring of pymatgen.analysis.elasticity.elastic:3: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/elasticity/elastic.py:docstring of pymatgen.analysis.elasticity.elastic.get_symbol_list:13: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/eos.py:docstring of pymatgen.analysis.eos.EOSBase.b0_GPa:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/eos.py:docstring of pymatgen.analysis.eos.NumericalEOS.fit:10: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/eos.py:docstring of pymatgen.analysis.eos.NumericalEOS.fit:15: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/ferroelectricity/polarization.py:docstring of pymatgen.analysis.ferroelectricity.polarization:34: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/ferroelectricity/polarization.py:docstring of pymatgen.analysis.ferroelectricity.polarization.Polarization:7: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/ferroelectricity/polarization.py:docstring of pymatgen.analysis.ferroelectricity.polarization:7: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/ferroelectricity/polarization.py:docstring of pymatgen.analysis.ferroelectricity.polarization.Polarization:18: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/ferroelectricity/polarization.py:docstring of pymatgen.analysis.ferroelectricity.polarization:18: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/ferroelectricity/polarization.py:docstring of pymatgen.analysis.ferroelectricity.polarization:32: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/gb/grain.py:docstring of pymatgen.analysis.gb.grain.GrainBoundary:10: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/gb/grain.py:docstring of pymatgen.analysis.gb.grain.GrainBoundary.get_sorted_structure:6: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/gb/grain.py:docstring of pymatgen.analysis.gb.grain.GrainBoundary:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/gb/grain.py:docstring of pymatgen.analysis.gb.grain.GrainBoundary:21: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/gb/grain.py:docstring of pymatgen.analysis.gb.grain.GrainBoundaryGenerator.enum_possible_plane_cubic:14: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/gb/grain.py:docstring of pymatgen.analysis.gb.grain.GrainBoundaryGenerator.get_ratio:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/gb/grain.py:docstring of pymatgen.analysis.gb.grain:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/gb/grain.py:docstring of pymatgen.analysis.gb.grain.GrainBoundaryGenerator.get_trans_mat:73: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/graphs.py:docstring of pymatgen.analysis.graphs.MoleculeGraph.get_connected_sites:9: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/graphs.py:docstring of pymatgen.analysis.graphs.MoleculeGraph.split_molecule_subgraphs:19: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/graphs.py:docstring of pymatgen.analysis.graphs.ConnectedSite.index:1: WARNING: Block quote ends without a blank line; unexpected unindent. docstring of pymatgen.analysis.graphs.ConnectedSite.jimage:2: WARNING: Field list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/graphs.py:docstring of pymatgen.analysis.graphs.StructureGraph.get_connected_sites:9: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/interface_reactions.py:docstring of pymatgen.analysis.interface_reactions.InterfacialReactivity.labels:4: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/interfaces/substrate_analyzer.py:docstring of pymatgen.analysis.interfaces.substrate_analyzer.SubstrateAnalyzer:10: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/interfaces/substrate_analyzer.py:docstring of pymatgen.analysis.interfaces.substrate_analyzer.SubstrateAnalyzer:2: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/interfaces/zsl.py:docstring of pymatgen.analysis.interfaces.zsl.ZSLGenerator:8: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/interfaces/zsl.py:docstring of pymatgen.analysis.interfaces.zsl.ZSLGenerator:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/interfaces/zsl.py:docstring of pymatgen.analysis.interfaces.zsl.ZSLGenerator:13: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/interfaces/zsl.py:docstring of pymatgen.analysis.interfaces.zsl.ZSLGenerator:9: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/interfaces/zsl.py:docstring of pymatgen.analysis.interfaces.zsl.ZSLGenerator.get_equiv_transformations:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/interfaces/zsl.py:docstring of pymatgen.analysis.interfaces.zsl.ZSLGenerator:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.BrunnerNN_real:6: WARNING: Field list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:8: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.BrunnerNN_real:1: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:12: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.BrunnerNN_real:2: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:16: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.BrunnerNN_real:6: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.BrunnerNN_real:10: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:25: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.BrunnerNN_real.get_nn_info:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:35: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.BrunnerNN_real.get_nn_info:10: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:40: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.BrunnerNN_real.get_nn_info:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:43: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.BrunnerNN_real.molecules_allowed:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams:56: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams.last_nneigh:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.LocalStructOrderParams.num_ops:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.VoronoiNN.get_all_voronoi_polyhedra:8: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/local_env.py:docstring of pymatgen.analysis.local_env.VoronoiNN.get_voronoi_polyhedra:14: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/magnetism/analyzer.py:docstring of pymatgen.analysis.magnetism.analyzer.CollinearMagneticStructureAnalyzer:14: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/magnetism/analyzer.py:docstring of pymatgen.analysis.magnetism.analyzer.CollinearMagneticStructureAnalyzer:6: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/nmr.py:docstring of pymatgen.analysis.nmr.ChemicalShielding:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.PDEntry.energy:1: WARNING: duplicate object description of pymatgen.analysis.phase_diagram.PDEntry.energy, other instance in pymatgen.analysis.phase_diagram, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.PDPlotter:14: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.CompoundPhaseDiagram:8: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.CompoundPhaseDiagram:1: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.CompoundPhaseDiagram:1: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.PhaseDiagram.get_phase_separation_energy:15: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.CompoundPhaseDiagram:5: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/phase_diagram.py:docstring of pymatgen.analysis.phase_diagram.CompoundPhaseDiagram:8: WARNING: Bullet list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/quasiharmonic.py:docstring of pymatgen.analysis.quasiharmonic.QuasiharmonicDebyeApprox:18: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/quasiharmonic.py:docstring of pymatgen.analysis.quasiharmonic.QuasiharmonicDebyeApprox.gruneisen_parameter:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/quasiharmonic.py:docstring of pymatgen.analysis.quasiharmonic.QuasiharmonicDebyeApprox.gruneisen_parameter:10: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/quasiharmonic.py:docstring of pymatgen.analysis.quasiharmonic:8: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/solar/slme.py:docstring of pymatgen.analysis.solar.slme.absorption_coefficient:4: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/solar/slme.py:docstring of pymatgen.analysis.solar.slme:5: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/solar/slme.py:docstring of pymatgen.analysis.solar.slme.parse_dielectric_data:4: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/solar/slme.py:docstring of pymatgen.analysis.solar.slme:3: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/structure_analyzer.py:docstring of pymatgen.analysis.structure_analyzer.VoronoiAnalyzer:11: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/structure_matcher.py:docstring of pymatgen.analysis.structure_matcher.StructureMatcher.get_transformation:12: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/structure_prediction/volume_predictor.py:docstring of pymatgen.analysis.structure_prediction.volume_predictor.RLSVolumePredictor.get_predicted_structure:6: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/structure_prediction/volume_predictor.py:docstring of pymatgen.analysis.structure_prediction.volume_predictor.DLSVolumePredictor:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/surface_analysis.py:docstring of pymatgen.analysis.surface_analysis:22: ERROR: Unknown directive type "todo". .. todo:: -Still assumes individual elements have their own chempots in a molecular adsorbate instead of considering a single chempot for a single molecular adsorbate. E.g. for an OH adsorbate, the surface energy is a function of delu_O and delu_H instead of delu_OH -Need a method to automatically get chempot range when dealing with non-stoichiometric slabs -Simplify the input for SurfaceEnergyPlotter such that the user does not need to generate a dict /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/surface_analysis.py:docstring of pymatgen.analysis.surface_analysis:1: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/surface_analysis.py:docstring of pymatgen.analysis.surface_analysis.SlabEntry.surface_energy:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/surface_analysis.py:docstring of pymatgen.analysis.surface_analysis.SurfaceEnergyPlotter:23: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/surface_analysis.py:docstring of pymatgen.analysis.surface_analysis:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/surface_analysis.py:docstring of pymatgen.analysis.surface_analysis.NanoscaleStability:10: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/surface_analysis.py:docstring of pymatgen.analysis.surface_analysis:1: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/surface_analysis.py:docstring of pymatgen.analysis.surface_analysis:3: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/surface_analysis.py:docstring of pymatgen.analysis.surface_analysis:6: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/surface_analysis.py:docstring of pymatgen.analysis.surface_analysis:2: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/surface_analysis.py:docstring of pymatgen.analysis.surface_analysis:1: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/wulff.py:docstring of pymatgen.analysis.wulff.WulffShape.shape_factor:4: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/wulff.py:docstring of pymatgen.analysis.wulff.hkl_tuple_to_str:4: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/xas/spectrum.py:docstring of pymatgen.analysis.xas.spectrum.XAS.stitch:8: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/xas/spectrum.py:docstring of pymatgen.analysis.xas.spectrum.XAS:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/xps.py:docstring of pymatgen.analysis.xps:7: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/analysis/xps.py:docstring of pymatgen.analysis.xps:11: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractElectrode.framework_formula:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractElectrode.framework_formula, other instance in pymatgen.apps.battery.battery_abc, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractElectrode.get_sub_electrodes:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractElectrode.working_ion:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractElectrode.working_ion, other instance in pymatgen.apps.battery.battery_abc, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractElectrode.working_ion_entry:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractElectrode.working_ion_entry, other instance in pymatgen.apps.battery.battery_abc, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.frac_charge:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.frac_charge, other instance in pymatgen.apps.battery.battery_abc, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.frac_discharge:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.frac_discharge, other instance in pymatgen.apps.battery.battery_abc, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.framework_formula:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.framework_formula, other instance in pymatgen.apps.battery.battery_abc, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.mAh:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.mAh, other instance in pymatgen.apps.battery.battery_abc, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.mass_charge:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.mass_charge, other instance in pymatgen.apps.battery.battery_abc, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.mass_discharge:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.mass_discharge, other instance in pymatgen.apps.battery.battery_abc, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.vol_charge:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.vol_charge, other instance in pymatgen.apps.battery.battery_abc, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.vol_discharge:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.vol_discharge, other instance in pymatgen.apps.battery.battery_abc, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.voltage:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.voltage, other instance in pymatgen.apps.battery.battery_abc, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/apps/battery/battery_abc.py:docstring of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.working_ion_entry:1: WARNING: duplicate object description of pymatgen.apps.battery.battery_abc.AbstractVoltagePair.working_ion_entry, other instance in pymatgen.apps.battery.battery_abc, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/apps/battery/conversion_battery.py:docstring of pymatgen.apps.battery.conversion_battery.ConversionElectrode:9: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/apps/battery/conversion_battery.py:docstring of pymatgen.apps.battery.conversion_battery.ConversionElectrode:2: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/apps/battery/conversion_battery.py:docstring of pymatgen.apps.battery.conversion_battery.ConversionVoltagePair.entries_charge:1: WARNING: duplicate object description of pymatgen.apps.battery.conversion_battery.ConversionVoltagePair.entries_charge, other instance in pymatgen.apps.battery.conversion_battery, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/apps/battery/conversion_battery.py:docstring of pymatgen.apps.battery.conversion_battery.ConversionVoltagePair.entries_discharge:1: WARNING: duplicate object description of pymatgen.apps.battery.conversion_battery.ConversionVoltagePair.entries_discharge, other instance in pymatgen.apps.battery.conversion_battery, use :noindex: for one of them WARNING: autodoc: failed to import module 'get_environment' from module 'pymatgen.cli'; the following exception was raised: No module named 'mp_api' WARNING: autodoc: failed to import module 'pmg' from module 'pymatgen.cli'; the following exception was raised: No module named 'mp_api' /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/cli/pmg_analyze.py:docstring of pymatgen.cli.pmg_analyze.get_energies:9: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/cli/pmg_analyze.py:docstring of pymatgen.cli.pmg_analyze.analyze:1: WARNING: Block quote ends without a blank line; unexpected unindent. WARNING: autodoc: failed to import module 'pmg_query' from module 'pymatgen.cli'; the following exception was raised: No module named 'mp_api' /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/command_line/chargemol_caller.py:docstring of pymatgen.command_line.chargemol_caller.ChargemolAnalysis.summary:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/command_line/chargemol_caller.py:docstring of pymatgen.command_line.chargemol_caller:8: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/command_line/chargemol_caller.py:docstring of pymatgen.command_line.chargemol_caller:11: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/command_line/chargemol_caller.py:docstring of pymatgen.command_line.chargemol_caller:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/command_line/critic2_caller.py:docstring of pymatgen.command_line.critic2_caller:25: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/command_line/critic2_caller.py:docstring of pymatgen.command_line.critic2_caller:26: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/command_line/critic2_caller.py:docstring of pymatgen.command_line.critic2_caller:34: WARNING: Field list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/command_line/critic2_caller.py:docstring of pymatgen.command_line.critic2_caller.Critic2Caller.from_chgcar:21: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/command_line/critic2_caller.py:docstring of pymatgen.command_line.critic2_caller:19: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/command_line/critic2_caller.py:docstring of pymatgen.command_line.critic2_caller.Critic2Analysis:2: WARNING: Field list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/command_line/mcsqs_caller.py:docstring of pymatgen.command_line.mcsqs_caller.run_mcsqs:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/command_line/mcsqs_caller.py:docstring of pymatgen.command_line.mcsqs_caller:3: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/command_line/mcsqs_caller.py:docstring of pymatgen.command_line.mcsqs_caller.Sqs:1: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/command_line/vampire_caller.py:docstring of pymatgen.command_line.vampire_caller.VampireCaller:27: ERROR: Unknown directive type "todo". .. todo:: * Create input files in a temp folder that gets cleaned up after run terminates /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/bonds.py:docstring of pymatgen.core.bonds.CovalentBond.get_bond_order:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/bonds.py:docstring of pymatgen.core.bonds.CovalentBond:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/bonds.py:docstring of pymatgen.core.bonds.CovalentBond.is_bonded:7: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/bonds.py:docstring of pymatgen.core.bonds.CovalentBond:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/composition.py:docstring of pymatgen.core.composition.ChemicalPotential:1: WARNING: Inline strong start-string without end-string. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/composition.py:docstring of pymatgen.core.composition.Composition:16: WARNING: Field list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/composition.py:docstring of pymatgen.core.composition.Composition:58: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/composition.py:docstring of pymatgen.core.composition.Composition:25: WARNING: Inline strong start-string without end-string. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/composition.py:docstring of pymatgen.core.composition.Composition:25: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/libxcfunc.py:docstring of pymatgen.core.libxcfunc.LibxcFunc.all_kinds:1: ERROR: Unknown target name: "xc". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/molecular_orbitals.py:docstring of pymatgen.core.molecular_orbitals:2: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.DummySpecies.X:1: WARNING: duplicate object description of pymatgen.core.periodic_table.DummySpecies.X, other instance in pymatgen.core.periodic_table, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.DummySpecies.Z:1: WARNING: duplicate object description of pymatgen.core.periodic_table.DummySpecies.Z, other instance in pymatgen.core.periodic_table, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.DummySpecies.oxi_state:1: WARNING: duplicate object description of pymatgen.core.periodic_table.DummySpecies.oxi_state, other instance in pymatgen.core.periodic_table, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.ElementBase.atomic_radius:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.ElementBase.electronic_structure:1: WARNING: duplicate object description of pymatgen.core.periodic_table.ElementBase.electronic_structure, other instance in pymatgen.core.periodic_table, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.Species.ionic_radius:1: WARNING: duplicate object description of pymatgen.core.periodic_table.Species.ionic_radius, other instance in pymatgen.core.periodic_table, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/periodic_table.py:docstring of pymatgen.core.periodic_table.Species.oxi_state:1: WARNING: duplicate object description of pymatgen.core.periodic_table.Species.oxi_state, other instance in pymatgen.core.periodic_table, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/sites.py:docstring of pymatgen.core.sites.PeriodicSite:9: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/sites.py:docstring of pymatgen.core.sites.PeriodicSite:2: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/sites.py:docstring of pymatgen.core.sites.Site:12: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/sites.py:docstring of pymatgen.core.sites.PeriodicSite:5: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/spectrum.py:docstring of pymatgen.core.spectrum.Spectrum:6: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/spectrum.py:docstring of pymatgen.core.spectrum.Spectrum:10: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/structure.py:docstring of pymatgen.core.structure.IStructure.get_symmetric_neighbor_list:4: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/structure.py:docstring of pymatgen.core.structure:2: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/structure.py:docstring of pymatgen.core.structure:3: WARNING: Inline strong start-string without end-string. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface:10: ERROR: Unknown directive type "trans_matrix". .. trans_matrix:: A 3x3 transformation matrix to generate the reconstructed slab. Only the a and b lattice vectors are actually changed while the c vector remains the same. This matrix is what the Wood's notation is based on. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.ReconstructionGenerator:1: ERROR: Unknown directive type "reconstruction_json". .. reconstruction_json:: The full json or dictionary containing the instructions for building the reconstructed slab /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.ReconstructionGenerator:3: ERROR: Unknown directive type "termination". .. termination:: The index of the termination of the slab /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.ReconstructionGenerator:29: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.ReconstructionGenerator:47: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.ReconstructionGenerator:69: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.ReconstructionGenerator:1: ERROR: Unknown directive type "todo". .. todo:: Is there a way to determine site equivalence between sites in a slab and bulk system? This would allow us get the coordination number of a specific site for multi-elemental systems or systems with more than one unequivalent site. This will allow us to use this for compound systems. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface:6: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.SlabGenerator.move_to_other_side:7: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.SlabGenerator.repair_broken_bonds:10: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.get_slab_regions:6: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface:5: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.get_symmetrically_distinct_miller_indices:7: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface:6: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface.hkl_transformation:4: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/surface.py:docstring of pymatgen.core.surface:2: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/trajectory.py:docstring of pymatgen.core.trajectory.Trajectory:19: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/trajectory.py:docstring of pymatgen.core.trajectory.Trajectory:11: WARNING: Block quote ends without a blank line; unexpected unindent. WARNING: Failed to get a method signature for pymatgen.core.xcfunc.XcFunc.name: is not a callable object WARNING: Failed to get a method signature for pymatgen.core.xcfunc.XcFunc.type: is not a callable object /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/core/xcfunc.py:docstring of pymatgen.core.xcfunc.XcFunc:28: ERROR: Unknown target name: "xc". WARNING: autodoc: failed to import module 'dao' from module 'pymatgen'; the following exception was raised: No module named 'pymatgen.dao' /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/boltztrap.py:docstring of pymatgen.electronic_structure.boltztrap.BoltztrapAnalyzer.check_acc_bzt_bands:9: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/boltztrap.py:docstring of pymatgen.electronic_structure.boltztrap:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/boltztrap.py:docstring of pymatgen.electronic_structure.boltztrap:17: WARNING: Bullet list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/boltztrap.py:docstring of pymatgen.electronic_structure.boltztrap.BoltztrapRunner.run:6: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/boltztrap.py:docstring of pymatgen.electronic_structure.boltztrap:4: WARNING: Block quote ends without a blank line; unexpected unindent. WARNING: autodoc: failed to import module 'boltztrap2' from module 'pymatgen.electronic_structure'; the following exception was raised: Traceback (most recent call last): File "/build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/boltztrap2.py", line 49, in from BoltzTraP2 import bandlib as BL ModuleNotFoundError: No module named 'BoltzTraP2' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 58, in import_module return importlib.import_module(modname) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.11/importlib/__init__.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "", line 1206, in _gcd_import File "", line 1178, in _find_and_load File "", line 1149, in _find_and_load_unlocked File "", line 690, in _load_unlocked File "", line 940, in exec_module File "", line 241, in _call_with_frames_removed File "/build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/boltztrap2.py", line 52, in raise BoltztrapError("BoltzTraP2 has to be installed and working") pymatgen.electronic_structure.boltztrap.BoltztrapError: BoltzTraP2 has to be installed and working /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpCollection.are_cobis:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpCollection.are_cobis, other instance in pymatgen.electronic_structure.cohp, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpCollection.are_coops:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpCollection.are_coops, other instance in pymatgen.electronic_structure.cohp, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpCollection.get_icohp_dict_of_site:4: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp:2: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpCollection.is_spin_polarized:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpCollection.is_spin_polarized, other instance in pymatgen.electronic_structure.cohp, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue.are_cobis:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpValue.are_cobis, other instance in pymatgen.electronic_structure.cohp, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue.are_coops:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpValue.are_coops, other instance in pymatgen.electronic_structure.cohp, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue.icohp:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpValue.icohp, other instance in pymatgen.electronic_structure.cohp, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.IcohpValue.num_bonds:1: WARNING: duplicate object description of pymatgen.electronic_structure.cohp.IcohpValue.num_bonds, other instance in pymatgen.electronic_structure.cohp, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.get_integrated_cohp_in_energy_range:6: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/cohp.py:docstring of pymatgen.electronic_structure.cohp.Cohp:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos.get_band_center:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos:2: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos:2: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos:1: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos:1: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/dos.py:docstring of pymatgen.electronic_structure.dos.CompleteDos:1: WARNING: Field list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/plotter.py:docstring of pymatgen.electronic_structure.plotter.BSDOSPlotter.get_plot:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/plotter.py:docstring of pymatgen.electronic_structure.plotter:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/electronic_structure/plotter.py:docstring of pymatgen.electronic_structure.plotter.BSPlotterProjected.get_projected_plots_dots_patom_pmorb:34: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/entries/computed_entries.py:docstring of pymatgen.entries.computed_entries.ComputedEntry.correction:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/entries/computed_entries.py:docstring of pymatgen.entries.computed_entries.ComputedEntry.correction_per_atom:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/entries/computed_entries.py:docstring of pymatgen.entries.computed_entries.ComputedEntry.correction_uncertainty_per_atom:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/entries/computed_entries.py:docstring of pymatgen.entries.computed_entries.ComputedEntry.uncorrected_energy_per_atom:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/entries/mixing_scheme.py:docstring of pymatgen.entries.mixing_scheme.MaterialsProjectDFTMixingScheme.get_mixing_state_data:13: ERROR: Unexpected indentation. WARNING: autodoc: failed to import module 'matproj' from module 'pymatgen.ext'; the following exception was raised: No module named 'mp_api' /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/abiobjects.py:docstring of pymatgen.io.abinit.abiobjects.structure_from_abivars:10: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/abiobjects.py:docstring of pymatgen.io.abinit.abiobjects.AbivarAble:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/abiobjects.py:docstring of pymatgen.io.abinit.abiobjects.AbivarAble.to_abivars:1: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/abitimer.py:docstring of pymatgen.io.abinit.abitimer.AbinitTimer:1: WARNING: Inline emphasis start-string without end-string. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ShiftMode:6: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicAbinitInput:3: ERROR: Undefined substitution referenced: "Structure". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicAbinitInput:6: ERROR: Undefined substitution referenced: "Pseudo". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicAbinitInput:6: ERROR: Undefined substitution referenced: "PseudoTable". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicAbinitInput.pseudos:1: ERROR: Undefined substitution referenced: "Pseudo". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicAbinitInput.structure:1: ERROR: Undefined substitution referenced: "Structure". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicMultiDataset:35: ERROR: Undefined substitution referenced: "Structure". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicMultiDataset.append:1: ERROR: Undefined substitution referenced: "BasicAbinitInput". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicMultiDataset.extend:1: ERROR: Undefined substitution referenced: "BasicAbinitInput". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.BasicMultiDataset.split_datasets:1: ERROR: Undefined substitution referenced: "BasicAbinitInput". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ebands_input:1: ERROR: Undefined substitution referenced: "BasicMultiDataset". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ebands_input:3: ERROR: Undefined substitution referenced: "Structure". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ebands_input:4: ERROR: Undefined substitution referenced: "Pseudo". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ebands_input:4: ERROR: Undefined substitution referenced: "PseudoTable". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.gs_input:1: ERROR: Undefined substitution referenced: "BasicAbinitInput". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.gs_input:3: ERROR: Undefined substitution referenced: "Structure". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.gs_input:4: ERROR: Undefined substitution referenced: "Pseudo". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.gs_input:4: ERROR: Undefined substitution referenced: "PseudoTable". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ion_ioncell_relax_input:1: ERROR: Undefined substitution referenced: "BasicMultiDataset". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ion_ioncell_relax_input:4: ERROR: Undefined substitution referenced: "Structure". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ion_ioncell_relax_input:5: ERROR: Undefined substitution referenced: "Pseudo". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.ion_ioncell_relax_input:5: ERROR: Undefined substitution referenced: "PseudoTable". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/abinit/inputs.py:docstring of pymatgen.io.abinit.inputs.num_valence_electrons:3: ERROR: Undefined substitution referenced: "Pseudo". WARNING: Failed to get a method signature for pymatgen.io.abinit.netcdf.ETSF_Reader.chemical_symbols: is not a callable object WARNING: Failed to get a method signature for pymatgen.io.abinit.pseudos.Pseudo.md5: is not a callable object /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/cif.py:docstring of pymatgen.io.cif.CifBlock:9: ERROR: Unknown target name: "data". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Davidson:7: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs:9: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs:18: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Scf:14: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs:14: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Scf:19: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs.Section.update:13: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/cp2k/inputs.py:docstring of pymatgen.io.cp2k.inputs:14: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/cp2k/outputs.py:docstring of pymatgen.io.cp2k.outputs.Cp2kOutput:10: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.Cp2kInputSet:23: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.CellOptSet:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.Cp2kInputSet:28: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.DftSet:20: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.DftSet:62: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.DftSet.modify_dft_print_iters:10: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/cube.py:docstring of pymatgen.io.cube:24: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/cube.py:docstring of pymatgen.io.cube:25: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/cube.py:docstring of pymatgen.io.cube:28: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/cube.py:docstring of pymatgen.io.cube:31: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/cube.py:docstring of pymatgen.io.cube:35: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/cube.py:docstring of pymatgen.io.cube:36: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/exciting/inputs.py:docstring of pymatgen.io.exciting.inputs.ExcitingInput.lockxyz:1: WARNING: duplicate object description of pymatgen.io.exciting.inputs.ExcitingInput.lockxyz, other instance in pymatgen.io.exciting.inputs, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/feff/inputs.py:docstring of pymatgen.io.feff.inputs.Header.from_string:4: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/feff/sets.py:docstring of pymatgen.io.feff.sets.FEFFDictSet:26: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/fiesta.py:docstring of pymatgen.io.fiesta.FiestaInput.set_auxiliary_basis_set:4: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianInput:16: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput:47: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianInput:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput.get_scan_plot:1: WARNING: duplicate object description of pymatgen.io.gaussian.GaussianOutput.get_scan_plot, other instance in pymatgen.io.gaussian, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianInput:3: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput.read_scan:1: WARNING: duplicate object description of pymatgen.io.gaussian.GaussianOutput.read_scan, other instance in pymatgen.io.gaussian, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput.save_scan_plot:1: WARNING: duplicate object description of pymatgen.io.gaussian.GaussianOutput.save_scan_plot, other instance in pymatgen.io.gaussian, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/gaussian.py:docstring of pymatgen.io.gaussian.GaussianOutput.to_input:1: WARNING: duplicate object description of pymatgen.io.gaussian.GaussianOutput.to_input, other instance in pymatgen.io.gaussian, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData.as_lammpsdata:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data:5: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData.disassemble:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data:4: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData.get_string:4: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data:2: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.ForceField:42: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData.disassemble:4: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.Topology:27: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/lammps/data.py:docstring of pymatgen.io.lammps.data.CombinedData:6: ERROR: Unknown target name: "a-za-z0-9". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/lmto.py:docstring of pymatgen.io.lmto.LMTOCtrl.from_dict:8: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/lmto.py:docstring of pymatgen.io.lmto.LMTOCopl:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Bandoverlaps:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar:17: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.energies, other instance in pymatgen.io.lobster.outputs, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar:27: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.energies, other instance in pymatgen.io.lobster.outputs, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.completedos:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.completedos, other instance in pymatgen.io.lobster.outputs, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.energies:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.energies, other instance in pymatgen.io.lobster.outputs, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.is_spin_polarized:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.is_spin_polarized, other instance in pymatgen.io.lobster.outputs, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.pdos:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.pdos, other instance in pymatgen.io.lobster.outputs, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.tdensities:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.tdensities, other instance in pymatgen.io.lobster.outputs, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/lobster/outputs.py:docstring of pymatgen.io.lobster.outputs.Doscar.tdos:1: WARNING: duplicate object description of pymatgen.io.lobster.outputs.Doscar.tdos, other instance in pymatgen.io.lobster.outputs, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/nwchem.py:docstring of pymatgen.io.nwchem:7: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/nwchem.py:docstring of pymatgen.io.nwchem:8: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/nwchem.py:docstring of pymatgen.io.nwchem.NwOutput.parse_tddft:13: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/nwchem.py:docstring of pymatgen.io.nwchem:12: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/nwchem.py:docstring of pymatgen.io.nwchem:13: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/nwchem.py:docstring of pymatgen.io.nwchem:14: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/packmol.py:docstring of pymatgen.io.packmol.PackmolBoxGen.get_input_set:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/packmol.py:docstring of pymatgen.io.packmol:6: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/phonopy.py:docstring of pymatgen.io.phonopy.get_gruneisen_ph_bs_symm_line:6: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/phonopy.py:docstring of pymatgen.io.phonopy.get_ph_bs_symm_line:6: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.QCOutput.multiple_outputs_from_file:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.QCOutput:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.check_for_structure_changes:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.check_for_structure_changes:7: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.QCOutput:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/qchem/outputs.py:docstring of pymatgen.io.qchem.outputs.QCOutput:2: WARNING: Bullet list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.Poscar.predictor_corrector:1: WARNING: duplicate object description of pymatgen.io.vasp.inputs.Poscar.predictor_corrector, other instance in pymatgen.io.vasp.inputs, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.Poscar.selective_dynamics:1: WARNING: duplicate object description of pymatgen.io.vasp.inputs.Poscar.selective_dynamics, other instance in pymatgen.io.vasp.inputs, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.Poscar.velocities:1: WARNING: duplicate object description of pymatgen.io.vasp.inputs.Poscar.velocities, other instance in pymatgen.io.vasp.inputs, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/inputs.py:docstring of pymatgen.io.vasp.inputs.PotcarSingle.identify_potcar:13: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.BSVasprun:15: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Dynmat:7: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Outcar:26: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.BSVasprun:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Outcar:46: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Outcar.read_fermi_contact_shift:6: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.BSVasprun:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.BSVasprun:1: CRITICAL: Missing matching underline for section title overline. ------------------------------------------------------------- , which corresponds to [[-0.002, -0.002, -0.051, 0.0, -0.052], /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Procar:23: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.BSVasprun:16: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.BSVasprun:5: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.BSVasprun:7: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.BSVasprun:8: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Vasprun:185: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.VolumetricData.to_hdf5:7: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.VolumetricData.to_hdf5:10: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.BSVasprun:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ:8: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ:12: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ.me_imag:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.WSWQ.me_imag, other instance in pymatgen.io.vasp.outputs, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ.me_real:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.WSWQ.me_real, other instance in pymatgen.io.vasp.outputs, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ.nbands:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.WSWQ.nbands, other instance in pymatgen.io.vasp.outputs, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ.nkpoints:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.WSWQ.nkpoints, other instance in pymatgen.io.vasp.outputs, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.WSWQ.nspin:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.WSWQ.nspin, other instance in pymatgen.io.vasp.outputs, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Waveder:16: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.BSVasprun:12: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Waveder.cder_imag:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.Waveder.cder_imag, other instance in pymatgen.io.vasp.outputs, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.Waveder.cder_real:1: WARNING: duplicate object description of pymatgen.io.vasp.outputs.Waveder.cder_real, other instance in pymatgen.io.vasp.outputs, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/outputs.py:docstring of pymatgen.io.vasp.outputs.BSVasprun:1: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/sets.py:docstring of pymatgen.io.vasp.sets.MPAbsorptionSet.from_prev_calc:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/sets.py:docstring of pymatgen.io.vasp.sets:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/sets.py:docstring of pymatgen.io.vasp.sets:1: WARNING: Definition list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/wannier90.py:docstring of pymatgen.io.wannier90.Unk.data:1: WARNING: duplicate object description of pymatgen.io.wannier90.Unk.data, other instance in pymatgen.io.wannier90, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/wannier90.py:docstring of pymatgen.io.wannier90.Unk.ik:1: WARNING: duplicate object description of pymatgen.io.wannier90.Unk.ik, other instance in pymatgen.io.wannier90, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/wannier90.py:docstring of pymatgen.io.wannier90.Unk.is_noncollinear:1: WARNING: duplicate object description of pymatgen.io.wannier90.Unk.is_noncollinear, other instance in pymatgen.io.wannier90, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/wannier90.py:docstring of pymatgen.io.wannier90.Unk.nbnd:1: WARNING: duplicate object description of pymatgen.io.wannier90.Unk.nbnd, other instance in pymatgen.io.wannier90, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/wannier90.py:docstring of pymatgen.io.wannier90.Unk.ng:1: WARNING: duplicate object description of pymatgen.io.wannier90.Unk.ng, other instance in pymatgen.io.wannier90, use :noindex: for one of them /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/xtb/outputs.py:docstring of pymatgen.io.xtb.outputs.CRESTOutput:7: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/xtb/outputs.py:docstring of pymatgen.io.xtb.outputs.CRESTOutput:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/zeopp.py:docstring of pymatgen.io.zeopp:10: WARNING: Title underline too short. Zeo++ Installation Steps: ======================== /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/zeopp.py:docstring of pymatgen.io.zeopp:15: WARNING: Title underline too short. Zeo++ Post-Installation Checking: ============================== /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/zeopp.py:docstring of pymatgen.io.zeopp:15: WARNING: Title underline too short. Zeo++ Post-Installation Checking: ============================== /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/zeopp.py:docstring of pymatgen.io.zeopp:19: WARNING: Enumerated list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/pymatgen.optimization.rst:14: WARNING: duplicated entry found in toctree: pymatgen.optimization.linear_assignment /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/pymatgen.optimization.rst:14: WARNING: duplicated entry found in toctree: pymatgen.optimization.linear_assignment /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/pymatgen.optimization.rst:14: WARNING: duplicated entry found in toctree: pymatgen.optimization.neighbors /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/pymatgen.optimization.rst:14: WARNING: duplicated entry found in toctree: pymatgen.optimization.neighbors WARNING: Failed to get a method signature for pymatgen.phonon.dos.PhononDos.ind_zero_freq: is not a callable object /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/phonon/gruneisen.py:docstring of pymatgen.phonon.gruneisen.GruneisenParameter.debye_temp_phonopy:3: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/phonon/ir_spectra.py:docstring of pymatgen.phonon.ir_spectra:1: ERROR: Unknown interpreted text role "cite". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/phonon/ir_spectra.py:docstring of pymatgen.phonon.ir_spectra:4: ERROR: Unknown interpreted text role "cite". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/phonon/thermal_displacements.py:docstring of pymatgen.phonon.thermal_displacements.ThermalDisplacementMatrices:10: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/phonon/thermal_displacements.py:docstring of pymatgen.phonon.thermal_displacements.ThermalDisplacementMatrices:16: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/phonon/thermal_displacements.py:docstring of pymatgen.phonon.thermal_displacements.ThermalDisplacementMatrices.compute_directionality_quality_criterion:10: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/phonon/thermal_displacements.py:docstring of pymatgen.phonon.thermal_displacements.ThermalDisplacementMatrices.to_structure_with_site_properties_Ucif:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/phonon/thermal_displacements.py:docstring of pymatgen.phonon.thermal_displacements.ThermalDisplacementMatrices:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/symmetry/analyzer.py:docstring of pymatgen.symmetry.analyzer:7: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/symmetry/kpath.py:docstring of pymatgen.symmetry.kpath.KPathBase:9: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/symmetry/kpath.py:docstring of pymatgen.symmetry.kpath.KPathLatimerMunro:15: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/symmetry/kpath.py:docstring of pymatgen.symmetry.kpath.KPathBase:7: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/symmetry/kpath.py:docstring of pymatgen.symmetry.kpath.KPathSetyawanCurtarolo:22: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/symmetry/maggroups.py:docstring of pymatgen.symmetry.maggroups.cached_class.._decorated:53: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/symmetry/maggroups.py:docstring of pymatgen.symmetry.maggroups.cached_class.._decorated:45: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/transformations/advanced_transformations.py:docstring of pymatgen.transformations.advanced_transformations.GrainBoundaryTransformation:34: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/transformations/advanced_transformations.py:docstring of pymatgen.transformations.advanced_transformations.AddAdsorbateTransformation:26: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/transformations/advanced_transformations.py:docstring of pymatgen.transformations.advanced_transformations.AddAdsorbateTransformation:11: WARNING: Field list ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/transformations/advanced_transformations.py:docstring of pymatgen.transformations.advanced_transformations.SQSTransformation:7: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/transformations/advanced_transformations.py:docstring of pymatgen.transformations.advanced_transformations.AddAdsorbateTransformation:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/pymatgen.util.rst:14: WARNING: duplicated entry found in toctree: pymatgen.util.coord_cython /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/pymatgen.util.rst:14: WARNING: duplicated entry found in toctree: pymatgen.util.coord_cython docstring of pymatgen.util.coord_cython.pbc_shortest_vectors:5: ERROR: Unknown target name: "np.float". docstring of pymatgen.util.coord_cython.pbc_shortest_vectors:1: ERROR: Unknown target name: "int". docstring of pymatgen.util.coord_cython.pbc_shortest_vectors:1: ERROR: Unknown target name: "float". /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/util/plotting.py:docstring of pymatgen.util.plotting.van_arkel_triangle:5: ERROR: Unexpected indentation. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/util/plotting.py:docstring of pymatgen.util.plotting.add_fig_kwargs:1: WARNING: Block quote ends without a blank line; unexpected unindent. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/team.rst:67: WARNING: Line block ends without a blank line. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/team.rst:90: WARNING: Line block ends without a blank line. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/team.rst:103: WARNING: Line block ends without a blank line. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/team.rst:116: WARNING: Line block ends without a blank line. /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/team.rst:129: WARNING: 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A title or caption not found: 'quick_start' /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/change_log.rst:2171: WARNING: unknown document: '/examples' /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/cp2k/sets.py:docstring of pymatgen.io.cp2k.sets.DftSet:1: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/sets.py:docstring of pymatgen.io.vasp.sets.DictSet:1: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints /build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/cpython3_3.11_pymatgen/build/pymatgen/io/vasp/sets.py:docstring of pymatgen.io.vasp.sets.MPStaticSet:1: WARNING: more than one target found for cross-reference 'Kpoints': pymatgen.io.cp2k.inputs.Kpoints, pymatgen.io.vasp.inputs.Kpoints /build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst/usage.rst:5: WARNING: unknown document: '/examples' generating indices... genindex py-modindex done writing additional pages... search done copying images... 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The HTML pages are in /build/reproducible-path/pymatgen-2022.11.7+dfsg1/build/html/html. make[2]: Leaving directory '/build/reproducible-path/pymatgen-2022.11.7+dfsg1/docs_rst' make[1]: Leaving directory '/build/reproducible-path/pymatgen-2022.11.7+dfsg1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/pymatgen-2022.11.7+dfsg1' py=`py3versions --default -v`; \ pybuilddir=`pybuild --pyver $py --print build_dir | awk '{print $3}'`; \ testdir=/build/reproducible-path/pymatgen-2022.11.7+dfsg1/.pybuild/test_python$py; \ cp -a $pybuilddir $testdir; \ for t in `find pymatgen -name tests`; do \ d=`dirname $t`; \ cp -a $t $testdir/$d; \ done; \ SKIP_TESTS=""; \ list_initialised=0; \ for t in test_matproj test_from_multi_jobs_file test_from_string test_read_molecule test_read_nbo test_read_negative test_read_plots test_read_write_nbo7 test_all test_custom_smd_write test_sets test_CifWriter test_read_write test_init test_get_site_symmetries; do \ if [ ${list_initialised} = 0 ]; then \ SKIP_TESTS=$t; \ list_initialised=1; \ else \ SKIP_TESTS="${SKIP_TESTS} or $t"; \ fi; \ done; \ if [ "x${SKIP_TESTS}" != "x" ]; then \ SKIP_TESTS="not ( ${SKIP_TESTS} )"; \ fi; \ echo "skipping tests: ${SKIP_TESTS}"; \ PMG_TEST_FILES_DIR=/usr/share/doc/pymatgen-test-files/examples/test_files PYTHONPATH=$testdir \ pytest-3 -v --color=no -k "${SKIP_TESTS}" $testdir; \ skipping tests: not ( test_matproj or test_from_multi_jobs_file or test_from_string or test_read_molecule or test_read_nbo or test_read_negative or test_read_plots or test_read_write_nbo7 or test_all or test_custom_smd_write or test_sets or test_CifWriter or test_read_write or test_init or test_get_site_symmetries ) ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack rootdir: /build/reproducible-path/pymatgen-2022.11.7+dfsg1, configfile: setup.cfg collected 2316 items / 176 deselected / 2 skipped / 2140 selected .pybuild/test_python3.11/pymatgen/alchemy/tests/test_filters.py ....... 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[100%] ============================= slowest 30 durations ============================= 40.65s call .pybuild/test_python3.11/pymatgen/symmetry/tests/test_kpath_lm.py::KPathLatimerMunroTest::test_kpath_generation 38.51s call .pybuild/test_python3.11/pymatgen/phonon/tests/test_gruneisen.py::GruneisenParameterTest::test_average_gruneisen 38.24s call .pybuild/test_python3.11/pymatgen/phonon/tests/test_gruneisen.py::GruneisenParameterTest::test_plot 37.48s call .pybuild/test_python3.11/pymatgen/phonon/tests/test_gruneisen.py::GruneisenParameterTest::test_thermal_conductivity_slack 33.70s call .pybuild/test_python3.11/pymatgen/phonon/tests/test_gruneisen.py::GruneisenParameterTest::test_phdos 32.64s call .pybuild/test_python3.11/pymatgen/phonon/tests/test_gruneisen.py::GruneisenParameterTest::test_tdos 31.58s call .pybuild/test_python3.11/pymatgen/io/vasp/tests/test_outputs.py::VasprunTest::test_runtype 31.56s call .pybuild/test_python3.11/pymatgen/phonon/tests/test_gruneisen.py::GruneisenParameterTest::test_debye_temp_phonopy 31.16s call .pybuild/test_python3.11/pymatgen/analysis/tests/test_fragmenter.py::TestFragmentMolecule::test_babel_PC_with_RO_depth_0_vs_depth_10 31.08s call .pybuild/test_python3.11/pymatgen/electronic_structure/tests/test_plotter.py::BSPlotterProjectedTest::test_methods 30.30s call .pybuild/test_python3.11/pymatgen/analysis/tests/test_structure_analyzer.py::MiscFunctionTest::test_average_coordination_number 27.59s call .pybuild/test_python3.11/pymatgen/phonon/tests/test_gruneisen.py::GruneisenParameterTest::test_acoustic_debye_temp 27.50s call .pybuild/test_python3.11/pymatgen/phonon/tests/test_gruneisen.py::GruneisenParameterTest::test_fromdict_asdict 26.80s call .pybuild/test_python3.11/pymatgen/phonon/tests/test_gruneisen.py::GruneisenParameterTest::test_frequencies 26.55s call .pybuild/test_python3.11/pymatgen/phonon/tests/test_gruneisen.py::GruneisenParameterTest::test_multi 25.10s call .pybuild/test_python3.11/pymatgen/io/vasp/tests/test_optics.py::VasprunTest::test_optics 24.31s call .pybuild/test_python3.11/pymatgen/phonon/tests/test_gruneisen.py::GruneisenParameterTest::test_gruneisen 23.69s call .pybuild/test_python3.11/pymatgen/analysis/tests/test_fragmenter.py::TestFragmentMolecule::test_PC_then_EC_depth_10 22.25s call .pybuild/test_python3.11/pymatgen/transformations/tests/test_standard_transformations.py::ScaleToRelaxedTransformationTest::test_apply_transformation 18.48s call .pybuild/test_python3.11/pymatgen/phonon/tests/test_plotter.py::PhononBSPlotterTest::test_proj_plot 17.50s call .pybuild/test_python3.11/pymatgen/analysis/elasticity/tests/test_elastic.py::DiffFitTest::test_fit 16.37s call .pybuild/test_python3.11/pymatgen/symmetry/tests/test_kpath_sc.py::BandStructureSCTest::test_kpath_generation 13.58s call .pybuild/test_python3.11/pymatgen/analysis/elasticity/tests/test_elastic.py::ElasticTensorExpansionTest::test_get_yield_stress 12.93s call .pybuild/test_python3.11/pymatgen/io/vasp/tests/test_outputs.py::OutcarTest::test_stopped 12.93s call .pybuild/test_python3.11/pymatgen/core/tests/test_surface.py::MillerIndexFinderTests::test_generate_all_slabs 12.85s call .pybuild/test_python3.11/pymatgen/io/vasp/tests/test_outputs.py::OutcarTest::test_stopped_old 12.57s call .pybuild/test_python3.11/pymatgen/io/tests/test_phonopy.py::TestGruneisen::test_gruneisen_parameter 10.78s call .pybuild/test_python3.11/pymatgen/core/tests/test_surface.py::SlabGeneratorTest::test_nonstoichiometric_symmetrized_slab 9.89s call .pybuild/test_python3.11/pymatgen/io/lobster/tests/test_lobsterenv.py::TestLobsterNeighbors::test_get_info_cohps_to_neighbors 9.57s call .pybuild/test_python3.11/pymatgen/core/tests/test_surface.py::SlabTest::test_symmetrization =========================== short test summary info ============================ SKIPPED [1] .pybuild/test_python3.11/pymatgen/io/tests/test_packmol.py:18: packmol executable not present SKIPPED [1] .pybuild/test_python3.11/pymatgen/io/vasp/tests/test_sets.py:61: unittest.case.SkipTest: PMG_VASP_PSP_DIR is not set. 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SKIPPED [1] .pybuild/test_python3.11/pymatgen/transformations/tests/test_standard_transformations.py:283: enum_lib not present. ======== 1994 passed, 148 skipped, 176 deselected in 1345.28s (0:22:25) ======== ..tot conformations = 3 ..tot confs tested = 3 ..below energy threshold = 3 make[1]: Leaving directory '/build/reproducible-path/pymatgen-2022.11.7+dfsg1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:161: Copying package built for python3.11 to destdir dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installdocs: warning: Cannot auto-detect main package for python-pymatgen-doc. If the default is wrong, please use --doc-main-package debian/rules execute_after_dh_installdocs-indep make[1]: Entering directory '/build/reproducible-path/pymatgen-2022.11.7+dfsg1' # use multiline sed to remove entire div block for google-analytics.com grep "google-analytics.com" debian/python-pymatgen-doc/usr/share/doc/python-pymatgen-doc/html/* -r --files-with-matches | xargs sed '/./{H;$!d} ; x ; s/
.*google-analytics.com.*<\/div>//' -i grep 'src="https://anaconda.org/conda-forge/pymatgen/badges/downloads.svg"' debian/python-pymatgen-doc/usr/share/doc/python-pymatgen-doc/html/* -r --files-with-matches | xargs sed 's|src="https://anaconda.org/conda-forge/pymatgen/badges/downloads.svg"|src="_images/downloads.svg"|' -i grep 'src="https://github.com/materialsproject/pymatgen/actions/workflows/test.yml/badge.svg"' debian/python-pymatgen-doc/usr/share/doc/python-pymatgen-doc/html/* -r --files-with-matches | xargs sed 's|src="https://github.com/materialsproject/pymatgen/actions/workflows/test.yml/badge.svg"|src="_images/tests_passing.svg"|' -i grep 'src="https://coveralls.io/repos/github/materialsproject/pymatgen/badge.svg?branch=master"' debian/python-pymatgen-doc/usr/share/doc/python-pymatgen-doc/html/* -r --files-with-matches | xargs sed 's|src="https://coveralls.io/repos/github/materialsproject/pymatgen/badge.svg?branch=master"|src="_images/coverage.svg"|' -i grep 'src="https://cdnjs.cloudflare.com/ajax/libs/octicons/.*/svg/mark-github.svg"' debian/python-pymatgen-doc/usr/share/doc/python-pymatgen-doc/html/* -r --files-with-matches | xargs sed 's|src="https://cdnjs.cloudflare.com/ajax/libs/octicons/.*/svg/mark-github.svg"|src="_images/mark-notgithub.svg"|' -i make[1]: Leaving directory '/build/reproducible-path/pymatgen-2022.11.7+dfsg1' dh_sphinxdoc -i -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:302: Cannot find package that provides mp_api. Please add package that provides it to Build-Depends or add "mp_api python3-mp-api" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. I: dh_python3 pydist:325: Ignoring complex environment marker: boltztrap2 (>=22.3.2) ; (platform_system != "Windows") and extra == 'optional' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-pymatgen-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pymatgen-dbgsym' in '../python3-pymatgen-dbgsym_2022.11.7+dfsg1-11+deb12u1_amd64.deb'. dpkg-deb: building package 'python-pymatgen-doc' in '../python-pymatgen-doc_2022.11.7+dfsg1-11+deb12u1_all.deb'. dpkg-deb: building package 'python3-pymatgen' in '../python3-pymatgen_2022.11.7+dfsg1-11+deb12u1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../pymatgen_2022.11.7+dfsg1-11+deb12u1_amd64.buildinfo dpkg-genchanges --build=binary -O../pymatgen_2022.11.7+dfsg1-11+deb12u1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from pymatgen-2022.11.7+dfsg1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/118380 and its subdirectories I: Current time: Sat Nov 9 12:25:04 -12 2024 I: pbuilder-time-stamp: 1731198304 Sun Nov 10 00:25:10 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Sun Nov 10 00:25:10 UTC 2024 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Sun Nov 10 01:07:43 UTC 2024 I: Deleting $TMPDIR on infom02-amd64.debian.net. Sun Nov 10 01:07:44 UTC 2024 I: pymatgen_2022.11.7+dfsg1-11+deb12u1_amd64.changes: Format: 1.8 Date: Wed, 28 Aug 2024 15:15:13 +0200 Source: pymatgen Binary: python-pymatgen-doc python3-pymatgen python3-pymatgen-dbgsym Architecture: all amd64 Version: 2022.11.7+dfsg1-11+deb12u1 Distribution: bookworm-security Urgency: medium Maintainer: Debichem Team Changed-By: Moritz Mühlenhoff Description: python-pymatgen-doc - Python Materials Genomics for materials analysis (documentation) python3-pymatgen - Python Materials Genomics for materials analysis Closes: 1064514 Changes: pymatgen (2022.11.7+dfsg1-11+deb12u1) bookworm-security; urgency=medium . * CVE-2024-23346 (Closes: #1064514) Checksums-Sha1: cce64a7e369d97857a5608c7fad9cdd6c65eb2f4 16464 pymatgen_2022.11.7+dfsg1-11+deb12u1_amd64.buildinfo 4b2b1739478f583e1751489ed2b275184630c894 3642564 python-pymatgen-doc_2022.11.7+dfsg1-11+deb12u1_all.deb df795b1713e820b847ac5afca02d0fe993463d2f 999444 python3-pymatgen-dbgsym_2022.11.7+dfsg1-11+deb12u1_amd64.deb 2050f0d771bd99717487e123aa2e2d1cd5b37a70 2055884 python3-pymatgen_2022.11.7+dfsg1-11+deb12u1_amd64.deb Checksums-Sha256: 57232973001a2ec681b2d33666ed8a79a8eb6661e59483196018a23bcf08711d 16464 pymatgen_2022.11.7+dfsg1-11+deb12u1_amd64.buildinfo c42f7b84f5555560e906ad06ef8f595428897b62e498973335530a7bb038aafe 3642564 python-pymatgen-doc_2022.11.7+dfsg1-11+deb12u1_all.deb 193fce14af47104058c24317d26d4bcc6d642a4e54df89ddef2108b94bec3e34 999444 python3-pymatgen-dbgsym_2022.11.7+dfsg1-11+deb12u1_amd64.deb 999b1364ac7456ceda61836930cf3ba24b21f1c020cbd6e0ee59d4575618832f 2055884 python3-pymatgen_2022.11.7+dfsg1-11+deb12u1_amd64.deb Files: a9bc55251413b5b3f1fc3eab3ca3c72a 16464 python optional pymatgen_2022.11.7+dfsg1-11+deb12u1_amd64.buildinfo efe5c94ce22fc3d3e91e2b9b673ef29c 3642564 doc optional python-pymatgen-doc_2022.11.7+dfsg1-11+deb12u1_all.deb 3f750e897da55f75546b73946032e27f 999444 debug optional python3-pymatgen-dbgsym_2022.11.7+dfsg1-11+deb12u1_amd64.deb 49471226bd0f7315275aa2263c26140a 2055884 python optional python3-pymatgen_2022.11.7+dfsg1-11+deb12u1_amd64.deb Sun Nov 10 01:07:45 UTC 2024 I: diffoscope 282 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_37-36537.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.9zJoLBgl/pymatgen_2022.11.7+dfsg1-11+deb12u1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.9zJoLBgl/pymatgen_2022.11.7+dfsg1-11+deb12u1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.9zJoLBgl/pymatgen_2022.11.7+dfsg1-11+deb12u1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.9zJoLBgl/b1/pymatgen_2022.11.7+dfsg1-11+deb12u1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.9zJoLBgl/b2/pymatgen_2022.11.7+dfsg1-11+deb12u1_amd64.changes ## close_archive (total time: 0.000s) 0.000s 4 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer ## command (total time: 1.293s) 0.923s 6 calls xz 0.252s 7 calls diff 0.048s 6 calls cmp 0.048s 6 calls cmp (external) 0.019s 11 calls html2text 0.002s 35 calls cmp (internal) ## compare_files (cumulative) (total time: 8.365s) 2.350s 1 call abc.DotChangesFile 2.311s 1 call abc.DebFile 2.264s 2 calls abc.XzFile 1.231s 1 call abc.DebDataTarFile 0.120s 1 call abc.HtmlFile 0.062s 1 call abc.TarFile 0.027s 1 call abc.Md5sumsFile ## container_extract (total time: 1.361s) 0.923s 6 calls diffoscope.comparators.xz.XzContainer 0.414s 1202 calls diffoscope.comparators.deb.DebTarContainer 0.020s 8 calls diffoscope.comparators.deb.DebContainer 0.003s 6 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 0.003s) 0.003s 5 calls linediff ## has_same_content_as (total time: 0.054s) 0.034s 1 call abc.DebDataTarFile 0.009s 3 calls abc.DebFile 0.005s 2 calls abc.Md5sumsFile 0.003s 25 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.003s 1 call abc.TarFile 0.000s 2 calls abc.TextFile 0.000s 2 calls abc.XzFile 0.000s 1 call abc.DotChangesFile 0.000s 1 call abc.HtmlFile ## main (total time: 2.899s) 2.813s 2 calls outputs 0.086s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 0.053s) 0.052s 1 call html 0.001s 1 call text 0.000s 1 call json ## recognizes (total time: 0.199s) 0.090s 12 calls diffoscope.comparators.binary.FilesystemFile 0.060s 544 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.031s 260 calls diffoscope.comparators.utils.archive.ArchiveMember 0.018s 162 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 0.088s) 0.088s 38 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 3.219s CPU time consumed: 3.110s Sun Nov 10 01:08:48 UTC 2024 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Sun Nov 10 01:08:48 UTC 2024 E: pymatgen failed to build reproducibly in bookworm on amd64. Sun Nov 10 01:08:50 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Nov 10 01:08:50 UTC 2024 I: Submitting 20K b1/pymatgen_2022.11.7+dfsg1-11+deb12u1_amd64.buildinfo.asc Sun Nov 10 01:08:51 UTC 2024 I: Submitting 20K b2/pymatgen_2022.11.7+dfsg1-11+deb12u1_amd64.buildinfo.asc Sun Nov 10 01:08:52 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Nov 10 01:08:52 UTC 2024 I: Done submitting .buildinfo files. Sun Nov 10 01:08:52 UTC 2024 I: Removing signed pymatgen_2022.11.7+dfsg1-11+deb12u1_amd64.buildinfo.asc files: removed './b1/pymatgen_2022.11.7+dfsg1-11+deb12u1_amd64.buildinfo.asc' removed './b2/pymatgen_2022.11.7+dfsg1-11+deb12u1_amd64.buildinfo.asc'