Fri May 5 06:05:45 UTC 2023 I: starting to build pychopper/bookworm/amd64 on jenkins on '2023-05-05 06:05' Fri May 5 06:05:45 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_25/11481/console.log Fri May 5 06:05:45 UTC 2023 I: Downloading source for bookworm/pychopper=2.7.2-1 --2023-05-05 06:05:46-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/pychopper/pychopper_2.7.2-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2151 (2.1K) [text/prs.lines.tag] Saving to: ‘pychopper_2.7.2-1.dsc’ 0K .. 100% 154M=0s 2023-05-05 06:05:46 (154 MB/s) - ‘pychopper_2.7.2-1.dsc’ saved [2151/2151] Fri May 5 06:05:46 UTC 2023 I: pychopper_2.7.2-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: pychopper Binary: python3-pychopper Architecture: all Version: 2.7.2-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/epi2me-labs/pychopper Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/pychopper Vcs-Git: https://salsa.debian.org/med-team/pychopper.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: python3-all, python3-edlib, python3-pytest Build-Depends: debhelper-compat (= 13), dh-python, python3-setuptools, python3-sphinx, python3-sphinx-argparse, python3-sphinx-rtd-theme, python3-all, python3-edlib , python3-parasail , python3-matplotlib , python3-seaborn , python3-tqdm , python3-six , python3-pandas , python3-pytest , python3-pytest-arraydiff , python3-pytest-cov , python3-pytest-doctestplus , python3-pytest-forked , python3-pytest-openfiles , python3-pytest-remotedata , python3-pytest-timeout , python3-pytest-xdist , python3-hypothesis , python3-pytest-mock , xonsh Package-List: python3-pychopper deb python optional arch=all Checksums-Sha1: 19e9d061fc5b6f13f03d0025a985d998f9b56921 62515978 pychopper_2.7.2.orig.tar.gz a4eb4f9e42ba0713d39e177818250028e4576c0f 4432 pychopper_2.7.2-1.debian.tar.xz Checksums-Sha256: 8979e18f2d97fc01a591573e4519dfed3f661e41b056200719f1f4bcb8f21bc0 62515978 pychopper_2.7.2.orig.tar.gz 32aa9829ec45ddf7feca4a30af7093f5b6be168b2d4f2d640e0cc02d96d2acac 4432 pychopper_2.7.2-1.debian.tar.xz Files: 21e4042aa1ba4e5d6f1e574127d83904 62515978 pychopper_2.7.2.orig.tar.gz 0374597b45854f0460d99620e9fc95e6 4432 pychopper_2.7.2-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iHUEARYIAB0WIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCY3j6CgAKCRAqJ5BL1yQ+ 2gjAAQCR7oo/77RYzLfU7OZ3Nz/7oMd3wTE36jbM2FVfwTQ7+wD/WY6zrGriAh4a HER/iUTdlG68DKV0psWMRinW3g4oDwU= =Xzoq -----END PGP SIGNATURE----- Fri May 5 06:05:46 UTC 2023 I: Checking whether the package is not for us Fri May 5 06:05:46 UTC 2023 I: Starting 1st build on remote node ionos1-amd64.debian.net. Fri May 5 06:05:46 UTC 2023 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Fri May 5 06:12:37 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu May 4 18:05:50 -12 2023 I: pbuilder-time-stamp: 1683266750 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pychopper_2.7.2-1.dsc] I: copying [./pychopper_2.7.2.orig.tar.gz] I: copying [./pychopper_2.7.2-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Nov 19 03:45:14 2022 -12 gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pychopper_2.7.2-1.dsc: no acceptable signature found dpkg-source: info: extracting pychopper in pychopper-2.7.2 dpkg-source: info: unpacking pychopper_2.7.2.orig.tar.gz dpkg-source: info: unpacking pychopper_2.7.2-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fixTests.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2431941/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='c54a960f78a34aa780a107736b8eb937' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2431941' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cRqQZaMe/pbuilderrc_2m1m --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cRqQZaMe/b1 --logfile b1/build.log pychopper_2.7.2-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 5.10.0-22-amd64 #1 SMP Debian 5.10.178-3 (2023-04-22) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/2431941/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-setuptools, python3-sphinx, python3-sphinx-argparse, python3-sphinx-rtd-theme, python3-all, python3-edlib, python3-parasail, python3-matplotlib, python3-seaborn, python3-tqdm, python3-six, python3-pandas, python3-pytest, python3-pytest-arraydiff, python3-pytest-cov, python3-pytest-doctestplus, python3-pytest-forked, python3-pytest-openfiles, python3-pytest-remotedata, python3-pytest-timeout, python3-pytest-xdist, python3-hypothesis, python3-pytest-mock, xonsh dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-argparse; however: Package python3-sphinx-argparse is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-rtd-theme; however: Package python3-sphinx-rtd-theme is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-edlib; however: Package python3-edlib is not installed. pbuilder-satisfydepends-dummy depends on python3-parasail; however: Package python3-parasail is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-seaborn; however: Package python3-seaborn is not installed. pbuilder-satisfydepends-dummy depends on python3-tqdm; however: Package python3-tqdm is not installed. pbuilder-satisfydepends-dummy depends on python3-six; however: Package python3-six is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-arraydiff; however: Package python3-pytest-arraydiff is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however: Package python3-pytest-cov is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-doctestplus; however: Package python3-pytest-doctestplus is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-forked; however: Package python3-pytest-forked is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-openfiles; however: Package python3-pytest-openfiles is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-remotedata; however: Package python3-pytest-remotedata is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-timeout; however: Package python3-pytest-timeout is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-xdist; however: Package python3-pytest-xdist is not installed. pbuilder-satisfydepends-dummy depends on python3-hypothesis; however: Package python3-hypothesis is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-mock; however: Package python3-pytest-mock is not installed. pbuilder-satisfydepends-dummy depends on xonsh; however: Package xonsh is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-font-awesome{a} fonts-lato{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libopenjp2-7{a} libparasail-dev{a} libparasail8{a} libpipeline1{a} libpng16-16{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8{a} libsub-override-perl{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxsimd-dev{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} openssl{a} po-debconf{a} python-babel-localedata{a} python-matplotlib-data{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-babel{a} python3-beniget{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-coverage{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-docutils{a} python3-edlib{a} python3-execnet{a} python3-fonttools{a} python3-fs{a} python3-gast{a} python3-hypothesis{a} python3-idna{a} python3-imagesize{a} python3-iniconfig{a} python3-jinja2{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-parasail{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pluggy{a} python3-ply{a} python3-psutil{a} python3-py{a} python3-pygments{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-arraydiff{a} python3-pytest-cov{a} python3-pytest-doctestplus{a} python3-pytest-forked{a} python3-pytest-mock{a} python3-pytest-openfiles{a} python3-pytest-remotedata{a} python3-pytest-timeout{a} python3-pytest-xdist{a} python3-pythran{a} python3-requests{a} python3-roman{a} python3-scipy{a} python3-seaborn{a} python3-setuptools{a} python3-six{a} python3-snowballstemmer{a} python3-sortedcontainers{a} python3-sphinx{a} python3-sphinx-argparse{a} python3-sphinx-rtd-theme{a} python3-sympy{a} python3-tk{a} python3-tqdm{a} python3-tz{a} python3-ufolib2{a} python3-urllib3{a} python3-wheel{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} sphinx-rtd-theme-common{a} tk8.6-blt2.5{a} unicode-data{a} x11-common{a} xml-core{a} xonsh{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx python3-bottleneck python3-bs4 python3-click python3-html5lib python3-numba python3-numexpr python3-odf python3-olefile python3-openpyxl python3-patsy python3-prompt-toolkit python3-setproctitle python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 205 newly installed, 0 to remove and 0 not upgraded. Need to get 146 MB of archives. After unpacking 791 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 fonts-lato all 2.0-2.1 [2696 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 14 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 sgml-base all 1.31 [15.4 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.8-1 [1407 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [1035 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5 [399 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2 [292 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2 [759 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libtk8.6 amd64 8.6.13-2 [781 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 59 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-2 [131 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130 [104 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 docutils-common all 0.19+dfsg-6 [127 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 fonts-lyx all 2.3.7-1 [186 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-20 [9510 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get: 88 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get: 89 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B] Get: 90 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-metadata all 12-4 [6532 B] Get: 91 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-3 [184 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.2 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 94 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 96 http://deb.debian.org/debian bookworm/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 97 http://deb.debian.org/debian bookworm/main amd64 libopenblas0-pthread amd64 0.3.21+ds-4 [6709 kB] Get: 98 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get: 99 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [28.9 kB] Get: 100 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 libopenblas0 amd64 0.3.21+ds-4 [32.6 kB] Get: 103 http://deb.debian.org/debian bookworm/main amd64 libopenblas-pthread-dev amd64 0.3.21+ds-4 [4971 kB] Get: 104 http://deb.debian.org/debian bookworm/main amd64 libopenblas-dev amd64 0.3.21+ds-4 [44.9 kB] Get: 105 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-1+b1 [189 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 libparasail8 amd64 2.6+dfsg-1 [1878 kB] Get: 107 http://deb.debian.org/debian bookworm/main amd64 libparasail-dev amd64 2.6+dfsg-1 [1495 kB] Get: 108 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get: 109 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 110 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6 [4738 kB] Get: 111 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get: 112 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get: 113 http://deb.debian.org/debian bookworm/main amd64 libqhull-r8.0 amd64 2020.2-5 [248 kB] Get: 114 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4.1 [10.6 kB] Get: 115 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.1 [285 kB] Get: 116 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-5 [316 kB] Get: 117 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.4-0.1 [99.2 kB] Get: 118 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.4-0.1 [109 kB] Get: 119 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get: 120 http://deb.debian.org/debian bookworm/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get: 121 http://deb.debian.org/debian bookworm/main amd64 python-babel-localedata all 2.10.3-1 [5615 kB] Get: 122 http://deb.debian.org/debian bookworm/main amd64 python-matplotlib-data all 3.6.3-1 [2744 kB] Get: 123 http://deb.debian.org/debian bookworm/main amd64 python3-alabaster all 0.7.12-1 [20.8 kB] Get: 124 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get: 125 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6 [615 kB] Get: 126 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get: 127 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Get: 128 http://deb.debian.org/debian bookworm/main amd64 python3-appdirs all 1.4.4-3 [13.0 kB] Get: 129 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get: 130 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 131 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.7.1-3 [30.1 kB] Get: 132 http://deb.debian.org/debian bookworm/main amd64 python3-babel all 2.10.3-1 [103 kB] Get: 133 http://deb.debian.org/debian bookworm/main amd64 python3-gast all 0.5.2-2 [9364 B] Get: 134 http://deb.debian.org/debian bookworm/main amd64 python3-beniget all 0.4.1-3 [9920 B] Get: 135 http://deb.debian.org/debian bookworm/main amd64 python3-brotli amd64 1.0.9-2+b6 [281 kB] Get: 136 http://deb.debian.org/debian bookworm/main amd64 python3-certifi all 2022.9.24-1 [153 kB] Get: 137 http://deb.debian.org/debian bookworm/main amd64 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get: 138 http://deb.debian.org/debian bookworm/main amd64 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get: 139 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get: 140 http://deb.debian.org/debian bookworm/main amd64 python3-contourpy amd64 1.0.7-1+b1 [176 kB] Get: 141 http://deb.debian.org/debian bookworm/main amd64 python3-coverage amd64 6.5.0+dfsg1-2+b1 [153 kB] Get: 142 http://deb.debian.org/debian bookworm/main amd64 python3-cycler all 0.11.0-1 [8020 B] Get: 143 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get: 144 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-2 [78.3 kB] Get: 145 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get: 146 http://deb.debian.org/debian bookworm/main amd64 python3-roman all 3.3-3 [9880 B] Get: 147 http://deb.debian.org/debian bookworm/main amd64 python3-docutils all 0.19+dfsg-6 [382 kB] Get: 148 http://deb.debian.org/debian bookworm/main amd64 python3-edlib amd64 1.2.7-4+b1 [59.6 kB] Get: 149 http://deb.debian.org/debian bookworm/main amd64 python3-execnet all 1.9.0-1 [41.5 kB] Get: 150 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get: 151 http://deb.debian.org/debian bookworm/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get: 152 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.10.1-2 [15.2 MB] Get: 153 http://deb.debian.org/debian bookworm/main amd64 python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB] Get: 154 http://deb.debian.org/debian bookworm/main amd64 python3-mpmath all 1.2.1-2 [418 kB] Get: 155 http://deb.debian.org/debian bookworm/main amd64 python3-sympy all 1.11.1-1 [4358 kB] Get: 156 http://deb.debian.org/debian bookworm/main amd64 python3-fs all 2.4.16-2 [95.2 kB] Get: 157 http://deb.debian.org/debian bookworm/main amd64 python3-lxml amd64 4.9.2-1+b1 [1194 kB] Get: 158 http://deb.debian.org/debian bookworm/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b2 [25.0 kB] Get: 159 http://deb.debian.org/debian bookworm/main amd64 unicode-data all 15.0.0-1 [7984 kB] Get: 160 http://deb.debian.org/debian bookworm/main amd64 python3-fonttools amd64 4.38.0-1+b1 [1012 kB] Get: 161 http://deb.debian.org/debian bookworm/main amd64 python3-sortedcontainers all 2.4.0-2 [31.9 kB] Get: 162 http://deb.debian.org/debian bookworm/main amd64 python3-hypothesis all 6.67.1-1 [270 kB] Get: 163 http://deb.debian.org/debian bookworm/main amd64 python3-idna all 3.3-1 [39.4 kB] Get: 164 http://deb.debian.org/debian bookworm/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 165 http://deb.debian.org/debian bookworm/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 166 http://deb.debian.org/debian bookworm/main amd64 python3-markupsafe amd64 2.1.2-1+b1 [13.2 kB] Get: 167 http://deb.debian.org/debian bookworm/main amd64 python3-jinja2 all 3.1.2-1 [119 kB] Get: 168 http://deb.debian.org/debian bookworm/main amd64 python3-kiwisolver amd64 1.4.4-1+b1 [60.1 kB] Get: 169 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.4.0-1.1+b1 [472 kB] Get: 170 http://deb.debian.org/debian bookworm/main amd64 python3-tk amd64 3.11.2-2 [98.2 kB] Get: 171 http://deb.debian.org/debian bookworm/main amd64 python3-pil.imagetk amd64 9.4.0-1.1+b1 [74.4 kB] Get: 172 http://deb.debian.org/debian bookworm/main amd64 python3-pyparsing all 3.0.9-1 [138 kB] Get: 173 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get: 174 http://deb.debian.org/debian bookworm/main amd64 python3-matplotlib amd64 3.6.3-1+b1 [6921 kB] Get: 175 http://deb.debian.org/debian bookworm/main amd64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 176 http://deb.debian.org/debian bookworm/main amd64 python3-pandas-lib amd64 1.5.3+dfsg-2 [3499 kB] Get: 177 http://deb.debian.org/debian bookworm/main amd64 python3-pandas all 1.5.3+dfsg-2 [2885 kB] Get: 178 http://deb.debian.org/debian bookworm/main amd64 python3-wheel all 0.38.4-2 [30.8 kB] Get: 179 http://deb.debian.org/debian bookworm/main amd64 python3-parasail all 1.3.3-1 [38.6 kB] Get: 180 http://deb.debian.org/debian bookworm/main amd64 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 181 http://deb.debian.org/debian bookworm/main amd64 python3-psutil amd64 5.9.4-1+b1 [189 kB] Get: 182 http://deb.debian.org/debian bookworm/main amd64 python3-py all 1.11.0-1 [89.2 kB] Get: 183 http://deb.debian.org/debian bookworm/main amd64 python3-pygments all 2.14.0+dfsg-1 [783 kB] Get: 184 http://deb.debian.org/debian bookworm/main amd64 python3-pytest all 7.2.1-2 [236 kB] Get: 185 http://deb.debian.org/debian bookworm/main amd64 python3-pytest-arraydiff all 0.5.0-2 [9656 B] Get: 186 http://deb.debian.org/debian bookworm/main amd64 python3-pytest-cov all 4.0.0-1 [26.1 kB] Get: 187 http://deb.debian.org/debian bookworm/main amd64 python3-pytest-doctestplus all 0.12.1-1 [20.8 kB] Get: 188 http://deb.debian.org/debian bookworm/main amd64 python3-pytest-forked all 1.4.0-2 [7572 B] Get: 189 http://deb.debian.org/debian bookworm/main amd64 python3-pytest-mock all 3.8.2-3 [16.5 kB] Get: 190 http://deb.debian.org/debian bookworm/main amd64 python3-pytest-openfiles all 0.5.0-3 [7536 B] Get: 191 http://deb.debian.org/debian bookworm/main amd64 python3-pytest-remotedata all 0.4.0-1 [9280 B] Get: 192 http://deb.debian.org/debian bookworm/main amd64 python3-pytest-timeout all 2.1.0-3 [19.4 kB] Get: 193 http://deb.debian.org/debian bookworm/main amd64 python3-pytest-xdist all 3.1.0-1 [39.6 kB] Get: 194 http://deb.debian.org/debian bookworm/main amd64 python3-urllib3 all 1.26.12-1 [117 kB] Get: 195 http://deb.debian.org/debian bookworm/main amd64 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get: 196 http://deb.debian.org/debian bookworm/main amd64 python3-seaborn all 0.12.2-1 [215 kB] Get: 197 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Get: 198 http://deb.debian.org/debian bookworm/main amd64 python3-snowballstemmer all 2.2.0-2 [57.8 kB] Get: 199 http://deb.debian.org/debian bookworm/main amd64 sphinx-common all 5.3.0-4 [653 kB] Get: 200 http://deb.debian.org/debian bookworm/main amd64 python3-sphinx all 5.3.0-4 [549 kB] Get: 201 http://deb.debian.org/debian bookworm/main amd64 sphinx-rtd-theme-common all 1.2.0+dfsg-1 [997 kB] Get: 202 http://deb.debian.org/debian bookworm/main amd64 python3-sphinx-argparse all 0.3.2-1 [37.1 kB] Get: 203 http://deb.debian.org/debian bookworm/main amd64 python3-sphinx-rtd-theme all 1.2.0+dfsg-1 [27.7 kB] Get: 204 http://deb.debian.org/debian bookworm/main amd64 python3-tqdm all 4.64.1-1 [97.7 kB] Get: 205 http://deb.debian.org/debian bookworm/main amd64 xonsh all 0.13.4+dfsg-1 [454 kB] Fetched 146 MB in 5s (27.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../0-fonts-lato_2.0-2.1_all.deb ... Unpacking fonts-lato (2.0-2.1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../1-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-jquery-hotkeys. 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Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libparasail8:amd64 (2.6+dfsg-1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.74.6-2) ... No schema files found: doing nothing. Setting up fonts-lyx (2.3.7-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libmagic1:amd64 (1:5.44-3) ... Setting up libdeflate0:amd64 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libqhull-r8.0:amd64 (2020.2-5) ... Setting up file (1:5.44-3) ... Setting up libparasail-dev:amd64 (2.6+dfsg-1) ... Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... Setting up libjbig0:amd64 (2.1-6.1) ... Setting up python-babel-localedata (2.10.3-1) ... Setting up unicode-data (15.0.0-1) ... Setting up libxsimd-dev:amd64 (8.1.0-7) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libexpat1-dev:amd64 (2.5.0-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-2) ... Setting up libx11-data (2:1.8.4-2) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libimagequant0:amd64 (2.17.0-1) ... Setting up libpng16-16:amd64 (1.6.39-2) ... Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... Setting up autopoint (0.21-12) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:amd64 (1.2.4-0.1) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libtiff6:amd64 (4.5.0-5) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libjson-perl (4.10000-1) ... Setting up libopenjp2-7:amd64 (2.5.0-1+b1) ... Setting up libsub-override-perl (0.09-4) ... Setting up sgml-base (1.31) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... Setting up python-matplotlib-data (3.6.3-1) ... Setting up openssl (3.0.8-1) ... Setting up libwebpmux3:amd64 (1.2.4-0.1) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (1.2.0+dfsg-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libopenblas0-pthread:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libtool (2.4.7-5) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libwebpdemux2:amd64 (1.2.4-0.1) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-5) ... Setting up libjs-jquery-metadata (12-4) ... Setting up libjs-jquery-isonscreen (1.2.0-1.1) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-3) ... Setting up libopenblas0:amd64 (0.3.21+ds-4) ... Setting up groff-base (1.22.4-10) ... Setting up xml-core (0.18+nmu1) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up libx11-6:amd64 (2:1.8.4-2) ... Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Setting up libfontconfig1:amd64 (2.14.1-4) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Setting up libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libopenblas-dev:amd64 (0.3.21+ds-4) ... Setting up libraqm0:amd64 (0.7.0-4.1) ... Setting up sphinx-common (5.3.0-4) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libxft2:amd64 (2.3.6-1) ... Setting up libpython3.11:amd64 (3.11.2-6) ... Setting up libtk8.6:amd64 (8.6.13-2) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-sortedcontainers (2.4.0-2) ... Setting up python3-markupsafe (2.1.2-1+b1) ... Setting up python3-psutil (5.9.4-1+b1) ... Setting up python3-tz (2022.7.1-3) ... Setting up python3-six (1.16.0-4) ... Setting up python3-roman (3.3-3) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-jinja2 (3.1.2-1) ... Setting up python3-packaging (23.0-1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-snowballstemmer (2.2.0-2) ... 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Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-babel (2.10.3-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-lz4 (4.0.2+dfsg-1+b2) ... Setting up python3.11-dev (3.11.2-6) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-alabaster (0.7.12-1) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-hypothesis (6.67.1-1) ... Setting up python3-ply (3.11-5) ... Setting up python3-tqdm (4.64.1-1) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-coverage (6.5.0+dfsg1-2+b1) ... Setting up python3-tk:amd64 (3.11.2-2) ... Setting up python3-pytest-cov (4.0.0-1) ... Setting up python3-wheel (0.38.4-2) ... Setting up python3-fs (2.4.16-2) ... Setting up python3-beniget (0.4.1-3) ... Setting up python3-pytest-forked (1.4.0-2) ... Setting up python3-pygments (2.14.0+dfsg-1) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up libpython3-all-dev:amd64 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up python3-pytest-remotedata (0.4.0-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-pytest-doctestplus (0.12.1-1) ... Setting up python3-pytest-mock (3.8.2-3) ... Setting up python3-contourpy (1.0.7-1+b1) ... Setting up python3-pytest-openfiles (0.5.0-3) ... Setting up xonsh (0.13.4+dfsg-1) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up python3-pytest-xdist (3.1.0-1) ... Setting up python3-pytest-timeout (2.1.0-3) ... Setting up python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Setting up python3-pytest-arraydiff (0.5.0-2) ... Setting up python3-parasail (1.3.3-1) ... Setting up python3-pandas (1.5.3+dfsg-2) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-scipy (1.10.1-2) ... Setting up python3-fonttools (4.38.0-1+b1) ... Setting up python3-pil:amd64 (9.4.0-1.1+b1) ... Setting up python3-pil.imagetk:amd64 (9.4.0-1.1+b1) ... Setting up python3-ufolib2 (0.14.0+dfsg1-1) ... Setting up python3-matplotlib (3.6.3-1+b1) ... Setting up python3-seaborn (0.12.2-1) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.19+dfsg-6) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.19+dfsg-6) ... Setting up python3-sphinx (5.3.0-4) ... Setting up python3-sphinx-rtd-theme (1.2.0+dfsg-1) ... Setting up python3-sphinx-argparse (0.3.2-1) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/pychopper-2.7.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pychopper_2.7.2-1_source.changes dpkg-buildpackage: info: source package pychopper dpkg-buildpackage: info: source version 2.7.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from pychopper-2.7.2/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/pychopper-2.7.2' dh_auto_clean pybuild --clean -i python{version} -p 3.11 I: pybuild base:240: python3.11 setup.py clean running clean removing '/build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; make clean make[2]: Entering directory '/build/pychopper-2.7.2' rm -rf __pycache__ dist build venv pychopper.egg-info tmp docs/_build make[2]: Leaving directory '/build/pychopper-2.7.2' cd docs && make clean # fails make[2]: Entering directory '/build/pychopper-2.7.2/docs' rm -rf _build/* rm -f pychopper.rst rm -f modules.rst make[2]: Leaving directory '/build/pychopper-2.7.2/docs' make[1]: Leaving directory '/build/pychopper-2.7.2' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-pychopper.substvars ./.gitignore debian/files rm -fr -- debian/python3-pychopper/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p 3.11 I: pybuild base:240: python3.11 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/pychopper-2.7.2' dh_auto_build pybuild --build -i python{version} -p 3.11 I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper copying pychopper/utils.py -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper copying pychopper/report.py -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper copying pychopper/chopper.py -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper copying pychopper/__init__.py -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper copying pychopper/parasail_backend.py -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper copying pychopper/common_structures.py -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper copying pychopper/alignment_hits.py -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper copying pychopper/edlib_backend.py -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper copying pychopper/hmmer_backend.py -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper copying pychopper/seq_utils.py -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper creating /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/scripts copying pychopper/scripts/pychopper.py -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/scripts copying pychopper/scripts/__init__.py -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/scripts creating /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/__init__.py -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/phmm_data creating /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/primer_data copying pychopper/primer_data/__init__.py -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/primer_data copying pychopper/primer_data/cDNA_SSP_VNP.fas -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/primer_data copying pychopper/primer_data/PCS111_primers.fas -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/primer_data copying pychopper/primer_data/PCS110_primers.fas -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/primer_data copying pychopper/phmm_data/PCS110_primers.hmm.h3f -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3p -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/PCS110_primers.hmm -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/PCS110_primers.hmm.h3p -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/PCS110_primers.hmm.h3m -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3i -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3f -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/PCS110_primers.hmm.h3i -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3m -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/phmm_data copying pychopper/phmm_data/cDNA_SSP_VNP.hmm -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/phmm_data cd docs && PYTHONPATH=.. make man make[2]: Entering directory '/build/pychopper-2.7.2/docs' sphinx-build -b man -d _build/doctrees . _build/man Running Sphinx v5.3.0 /build/pychopper-2.7.2/docs/./cmd_tools.py:10: DeprecationWarning: the imp module is deprecated in favour of importlib and slated for removal in Python 3.12; see the module's documentation for alternative uses import imp Traceback (most recent call last): File "/build/pychopper-2.7.2/docs/./cmd_tools.py", line 18, in scripts = sorted(filter(lambda s: s[0] != '.' and s not in blacklist, os.listdir(scripts_abs))) ^^^^^^^^^^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: '/build/pychopper-2.7.2/docs/../scripts' Failed to generate command tools documentation! Creating file ./pychopper.rst. Creating file ./pychopper.phmm_data.rst. Creating file ./pychopper.primer_data.rst. Creating file ./pychopper.scripts.rst. Creating file ./pychopper.tests.rst. Creating file ./modules.rst. making output directory... done building [mo]: targets for 0 po files that are out of date building [man]: all manpages updating environment: [new config] 8 added, 0 changed, 0 removed reading sources... [ 12%] cmd_list reading sources... [ 25%] index reading sources... [ 37%] modules reading sources... [ 50%] pychopper Matplotlib created a temporary config/cache directory at /tmp/matplotlib-ije_cftj because the default path (/nonexistent/first-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. reading sources... [ 62%] pychopper.phmm_data reading sources... [ 75%] pychopper.primer_data reading sources... [ 87%] pychopper.scripts reading sources... [100%] pychopper.tests looking for now-outdated files... none found pickling environment... done checking consistency... done writing... pychopper.1 { cmd_list modules pychopper pychopper.phmm_data pychopper.primer_data pychopper.scripts pychopper.tests } done build succeeded. The manual pages are in _build/man. Build finished. The manual pages are in _build/man. make[2]: Leaving directory '/build/pychopper-2.7.2/docs' make[1]: Leaving directory '/build/pychopper-2.7.2' rm -f debian/python3-pychopper.debhelper.log debian/rules execute_after_dh_auto_build make[1]: Entering directory '/build/pychopper-2.7.2' for py in `py3versions -s`; do \ builddir=$(pybuild --print build_dir --interpreter $py); \ mv $builddir/pychopper/scripts/pychopper.py $builddir/pychopper/scripts/pychopper; \ done make[1]: Leaving directory '/build/pychopper-2.7.2' debian/rules override_dh_auto_test make[1]: Entering directory '/build/pychopper-2.7.2' dh_auto_test -- --system=custom --test-args="export PATH=/build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/scripts:$PATH; \ chmod +x /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/scripts/pychopper; PYTHONPATH={build_dir} {interpreter} -m pytest -v" pybuild --test --test-pytest -i python{version} -p 3.11 --system=custom "--test-args=export PATH=/build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games; chmod +x /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/scripts/pychopper; PYTHONPATH={build_dir} {interpreter} -m pytest -v" I: pybuild pybuild:307: cp -av /build/pychopper-2.7.2/pychopper/tests/ /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/ '/build/pychopper-2.7.2/pychopper/tests/' -> '/build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests' '/build/pychopper-2.7.2/pychopper/tests/test_detector.py' -> '/build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/test_detector.py' '/build/pychopper-2.7.2/pychopper/tests/data' -> '/build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/data' '/build/pychopper-2.7.2/pychopper/tests/data/ref.fq.gz' -> '/build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/data/ref.fq.gz' '/build/pychopper-2.7.2/pychopper/tests/data/.gitignore' -> '/build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/data/.gitignore' '/build/pychopper-2.7.2/pychopper/tests/data/PCS111_umi_test_reads_expected.fastq' -> '/build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/data/PCS111_umi_test_reads_expected.fastq' '/build/pychopper-2.7.2/pychopper/tests/data/ref.fas.gz' -> '/build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/data/ref.fas.gz' '/build/pychopper-2.7.2/pychopper/tests/data/expected_output.fas' -> '/build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/data/expected_output.fas' '/build/pychopper-2.7.2/pychopper/tests/data/PCS111_umi_test_reads.fastq.gz' -> '/build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/data/PCS111_umi_test_reads.fastq.gz' '/build/pychopper-2.7.2/pychopper/tests/data/barcodes.fas' -> '/build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/data/barcodes.fas' '/build/pychopper-2.7.2/pychopper/tests/test_regression_simple.py' -> '/build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/test_regression_simple.py' '/build/pychopper-2.7.2/pychopper/tests/__init__.py' -> '/build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/__init__.py' '/build/pychopper-2.7.2/pychopper/tests/__pycache__' -> '/build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/__pycache__' '/build/pychopper-2.7.2/pychopper/tests/__pycache__/__init__.cpython-311.pyc' -> '/build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/__pycache__/__init__.cpython-311.pyc' '/build/pychopper-2.7.2/pychopper/tests/__pycache__/test_detector.cpython-311.pyc' -> '/build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/__pycache__/test_detector.cpython-311.pyc' '/build/pychopper-2.7.2/pychopper/tests/__pycache__/test_regression_simple.cpython-311.pyc' -> '/build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/__pycache__/test_regression_simple.cpython-311.pyc' I: pybuild base:240: export PATH=/build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games; chmod +x /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/scripts/pychopper; PYTHONPATH=/build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build python3.11 -m pytest -v /usr/lib/python3/dist-packages/pytest_openfiles/plugin.py:20: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. _pytest_36 = LooseVersion(pytest.__version__) >= LooseVersion("3.6") ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack -- /usr/bin/python3.11 cachedir: .pytest_cache hypothesis profile 'default' -> database=DirectoryBasedExampleDatabase('/build/pychopper-2.7.2/.hypothesis/examples') rootdir: /build/pychopper-2.7.2, configfile: pytest.ini, testpaths: pychopper plugins: xonsh-0.13.4, xdist-3.1.0, timeout-2.1.0, remotedata-0.4.0, openfiles-0.5.0, mock-3.8.2, forked-1.4.0, doctestplus-0.12.1, cov-4.0.0, arraydiff-0.5.0, hypothesis-6.67.1 collecting ... collected 4 items pychopper/tests/test_detector.py::TestDetector::testPairAlign PASSED [ 25%] pychopper/tests/test_detector.py::TestDetector::testScoreCutoff PASSED [ 50%] pychopper/tests/test_regression_simple.py::TestIntegration::testIntegration PASSED [ 75%] pychopper/tests/test_regression_simple.py::TestIntegration::testIntegration_umi PASSED [100%] ============================== 4 passed in 15.59s ============================== rm -fr -- /tmp/dh-xdg-rundir-flGOlRW7 set -e; \ for py in `py3versions -sv`; do \ rm -rf ".pybuild/cpython3_${py}_pychopper/pychopper/tests/"; \ done make[1]: Leaving directory '/build/pychopper-2.7.2' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-pychopper.substvars rm -fr -- debian/.debhelper/generated/python3-pychopper/ debian/python3-pychopper/ debian/tmp/ dh_auto_install --destdir=debian/python3-pychopper/ -O--buildsystem=pybuild install -m0755 -d /build/pychopper-2.7.2/debian/python3-pychopper pybuild --install -i python{version} -p 3.11 --dest-dir /build/pychopper-2.7.2/debian/python3-pychopper I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/pychopper-2.7.2/debian/python3-pychopper running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py copying pychopper/scripts/pychopper.py -> /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/scripts running install_lib creating /build/pychopper-2.7.2/debian/python3-pychopper/usr creating /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib creating /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11 creating /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages creating /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper creating /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/__pycache__ copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/__pycache__/report.cpython-311.pyc -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/__pycache__ copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/__pycache__/alignment_hits.cpython-311.pyc -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/__pycache__ copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/__pycache__/parasail_backend.cpython-311.pyc -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/__pycache__ copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/__pycache__/edlib_backend.cpython-311.pyc -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/__pycache__ copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/__pycache__/hmmer_backend.cpython-311.pyc -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/__pycache__ copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/__pycache__/chopper.cpython-311.pyc -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/__pycache__ copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/__pycache__/utils.cpython-311.pyc -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/__pycache__ copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/__pycache__/common_structures.cpython-311.pyc -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/__pycache__ copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/__pycache__/seq_utils.cpython-311.pyc -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/__pycache__ copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/__pycache__/__init__.cpython-311.pyc -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/__pycache__ creating /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/tests creating /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/tests/__pycache__ copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/__pycache__/test_regression_simple.cpython-311.pyc -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/tests/__pycache__ copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/__pycache__/test_detector.cpython-311.pyc -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/tests/__pycache__ copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/__pycache__/__init__.cpython-311.pyc -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/tests/__pycache__ copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/__init__.py -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/tests copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/test_regression_simple.py -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/tests creating /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/tests/data copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/data/barcodes.fas -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/tests/data copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/data/PCS111_umi_test_reads.fastq.gz -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/tests/data copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/data/expected_output.fas -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/tests/data copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/data/ref.fas.gz -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/tests/data copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/data/PCS111_umi_test_reads_expected.fastq -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/tests/data copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/data/.gitignore -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/tests/data copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/data/ref.fq.gz -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/tests/data copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/tests/test_detector.py -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/tests creating /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/primer_data creating /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/primer_data/__pycache__ copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/primer_data/__pycache__/__init__.cpython-311.pyc -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/primer_data/__pycache__ copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/primer_data/PCS110_primers.fas -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/primer_data copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/primer_data/PCS111_primers.fas -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/primer_data copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/primer_data/cDNA_SSP_VNP.fas -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/primer_data copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/primer_data/__init__.py -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/primer_data creating /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/phmm_data creating /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/phmm_data/__pycache__ copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/phmm_data/__pycache__/__init__.cpython-311.pyc -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/phmm_data/__pycache__ copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/phmm_data copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3m -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/phmm_data copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm.h3i -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/phmm_data copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3f -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/phmm_data copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3i -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/phmm_data copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm.h3m -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/phmm_data copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm.h3p -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/phmm_data copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/phmm_data copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3p -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/phmm_data copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/phmm_data/PCS110_primers.hmm.h3f -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/phmm_data copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/phmm_data/__init__.py -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/phmm_data creating /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/scripts copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/scripts/pychopper.py -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/scripts copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/scripts/pychopper -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/scripts copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/scripts/__init__.py -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/scripts copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/seq_utils.py -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/hmmer_backend.py -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/edlib_backend.py -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/alignment_hits.py -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/common_structures.py -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/parasail_backend.py -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/__init__.py -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/chopper.py -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/report.py -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper copying /build/pychopper-2.7.2/.pybuild/cpython3_3.11_pychopper/build/pychopper/utils.py -> /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper byte-compiling /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/tests/__init__.py to __init__.cpython-311.pyc byte-compiling /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/tests/test_regression_simple.py to test_regression_simple.cpython-311.pyc byte-compiling /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/tests/test_detector.py to test_detector.cpython-311.pyc byte-compiling /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/primer_data/__init__.py to __init__.cpython-311.pyc byte-compiling /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/phmm_data/__init__.py to __init__.cpython-311.pyc byte-compiling /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/scripts/pychopper.py to pychopper.cpython-311.pyc byte-compiling /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/scripts/__init__.py to __init__.cpython-311.pyc byte-compiling /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/seq_utils.py to seq_utils.cpython-311.pyc byte-compiling /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/hmmer_backend.py to hmmer_backend.cpython-311.pyc byte-compiling /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/edlib_backend.py to edlib_backend.cpython-311.pyc byte-compiling /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/alignment_hits.py to alignment_hits.cpython-311.pyc byte-compiling /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/common_structures.py to common_structures.cpython-311.pyc byte-compiling /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/parasail_backend.py to parasail_backend.cpython-311.pyc byte-compiling /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/__init__.py to __init__.cpython-311.pyc byte-compiling /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/chopper.py to chopper.cpython-311.pyc byte-compiling /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/report.py to report.cpython-311.pyc byte-compiling /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper/utils.py to utils.cpython-311.pyc running install_egg_info running egg_info creating pychopper.egg-info writing pychopper.egg-info/PKG-INFO writing dependency_links to pychopper.egg-info/dependency_links.txt writing entry points to pychopper.egg-info/entry_points.txt writing requirements to pychopper.egg-info/requires.txt writing top-level names to pychopper.egg-info/top_level.txt writing manifest file 'pychopper.egg-info/SOURCES.txt' reading manifest file 'pychopper.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' warning: manifest_maker: MANIFEST.in, line 8: unknown action 'rerursive-include' warning: manifest_maker: MANIFEST.in, line 9: unknown action 'rerursive-include' warning: no files found matching '*.jpg' under directory 'docs' warning: no files found matching '*.png' under directory 'docs' warning: no files found matching '*.gif' under directory 'docs' adding license file 'LICENSE.md' writing manifest file 'pychopper.egg-info/SOURCES.txt' Copying pychopper.egg-info to /build/pychopper-2.7.2/debian/python3-pychopper/usr/lib/python3.11/dist-packages/pychopper-2.7.2.egg-info Skipping SOURCES.txt running install_scripts Installing pychopper script to /build/pychopper-2.7.2/debian/python3-pychopper/usr/bin rm -f debian/python3-pychopper.debhelper.log debian/rules execute_after_dh_auto_install make[1]: Entering directory '/build/pychopper-2.7.2' find debian/ -name .gitignore -delete make[1]: Leaving directory '/build/pychopper-2.7.2' dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/python3-pychopper/usr/share/doc/python3-pychopper install -p -m0644 debian/copyright debian/python3-pychopper/usr/share/doc/python3-pychopper/copyright dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python3-pychopper/usr/share/doc/python3-pychopper install -p -m0644 debian/.debhelper/generated/python3-pychopper/dh_installchangelogs.dch.trimmed debian/python3-pychopper/usr/share/doc/python3-pychopper/changelog.Debian install -p -m0644 ./CHANGELOG.md debian/python3-pychopper/usr/share/doc/python3-pychopper/changelog dh_installman -O--buildsystem=pybuild install -m0755 -d debian/python3-pychopper/usr/share/man/man1/ install -p -m0644 ./docs/_build/man/pychopper.1 debian/python3-pychopper/usr/share/man/man1/pychopper.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-pychopper/usr/share/man/man1/pychopper.1 mv debian/python3-pychopper/usr/share/man/man1/pychopper.1.dh-new debian/python3-pychopper/usr/share/man/man1/pychopper.1 chmod 0644 -- debian/python3-pychopper/usr/share/man/man1/pychopper.1 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:179: version: 5.20230130 D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:182: supported Python versions: 3.11 (default=3.11) D: dh_python3 debhelper:183: source=pychopper, binary packages=['python3-pychopper'] D: dh_python3 dh_python3:204: processing package python3-pychopper... D: dh_python3 fs:52: moving files from debian/python3-pychopper/usr/lib/python3.11/dist-packages to debian/python3-pychopper/usr/lib/python3/dist-packages/ D: dh_python3 fs:400: package python3-pychopper details = {'requires.txt': {'debian/python3-pychopper/usr/lib/python3/dist-packages/pychopper-2.7.2.egg-info/requires.txt'}, 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-pychopper D: dh_python3 pydist:173: trying to find dependency for biopython (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for matplotlib (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for numpy (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for pandas (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for parasail (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for pytest (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for six (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for tqdm==4.26.0 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 depends:281: D={'python3-numpy', 'python3-six', 'python3-pandas', 'python3-parasail', 'python3-pytest', 'python3:any', 'python3-tqdm', 'python3-matplotlib', 'python3-biopython'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild install -m0755 -d debian/python3-pychopper/usr/share/lintian/overrides install -p -m0644 debian/lintian-overrides debian/python3-pychopper/usr/share/lintian/overrides/python3-pychopper dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild Using 1668872257 as canonical time Normalizing debian/python3-pychopper/usr/lib/python3/dist-packages/pychopper/tests/data/ref.fq.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-pychopper/usr/lib/python3/dist-packages/pychopper/tests/data/PCS111_umi_test_reads.fastq.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-pychopper/usr/lib/python3/dist-packages/pychopper/tests/data/ref.fas.gz using File::StripNondeterminism::handlers::gzip dh_compress -O--buildsystem=pybuild cd debian/python3-pychopper chmod a-x usr/share/doc/python3-pychopper/changelog usr/share/doc/python3-pychopper/changelog.Debian usr/share/man/man1/pychopper.1 gzip -9nf usr/share/doc/python3-pychopper/changelog usr/share/doc/python3-pychopper/changelog.Debian usr/share/man/man1/pychopper.1 cd '/build/pychopper-2.7.2' debian/rules override_dh_fixperms make[1]: Entering directory '/build/pychopper-2.7.2' dh_fixperms find debian/python3-pychopper ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-pychopper/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-pychopper/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-pychopper/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-pychopper/usr/share/man debian/python3-pychopper/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-pychopper -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-pychopper/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-pychopper/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/ -name PCS111_primers.fas -exec chmod -x '{}' \; make[1]: Leaving directory '/build/pychopper-2.7.2' dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-pychopper/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-pychopper/DEBIAN/postinst cat debian/python3-pychopper.postinst.debhelper >> debian/python3-pychopper/DEBIAN/postinst chmod 0755 -- debian/python3-pychopper/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-pychopper/DEBIAN/prerm cat debian/python3-pychopper.prerm.debhelper >> debian/python3-pychopper/DEBIAN/prerm chmod 0755 -- debian/python3-pychopper/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python3-pychopper/DEBIAN echo misc:Depends= >> debian/python3-pychopper.substvars echo misc:Pre-Depends= >> debian/python3-pychopper.substvars dpkg-gencontrol -ppython3-pychopper -ldebian/changelog -Tdebian/python3-pychopper.substvars -Pdebian/python3-pychopper chmod 0644 -- debian/python3-pychopper/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python3-pychopper/DEBIAN cd debian/python3-pychopper >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-pychopper/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-pychopper .. dpkg-deb: building package 'python3-pychopper' in '../python3-pychopper_2.7.2-1_all.deb'. dpkg-genbuildinfo --build=binary -O../pychopper_2.7.2-1_amd64.buildinfo dpkg-genchanges --build=binary -O../pychopper_2.7.2-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from pychopper-2.7.2/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2431941 and its subdirectories I: Current time: Thu May 4 18:12:36 -12 2023 I: pbuilder-time-stamp: 1683267156 Fri May 5 06:12:37 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Fri May 5 06:12:37 UTC 2023 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Fri May 5 06:14:49 UTC 2023 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Fri May 5 06:14:49 UTC 2023 I: pychopper_2.7.2-1_amd64.changes: Format: 1.8 Date: Sat, 19 Nov 2022 21:07:37 +0530 Source: pychopper Binary: python3-pychopper Architecture: all Version: 2.7.2-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: python3-pychopper - identify, orient and trim full-length Nanopore cDNA reads Closes: 1021971 Changes: pychopper (2.7.2-1) unstable; urgency=medium . * Team Upload. * New upstream version 2.7.2 (Closes: #1021971) * Bump Standards-Version to 4.6.1 (no changes needed) * Update fixTests.patch again * d/rules: + Rename pychopper.py script post build + Get tests running + Remove exec perm over PCS111_primers.fas + Prune .gitignore(s) post install * Add custom d/clean and get rid of some custom removals in d/rules * Check for supported versions in autopkgtests * Add python3-edlib to test-deps Checksums-Sha1: a820100e62345bd1ef190d1ee326d7f127ee09ce 10483 pychopper_2.7.2-1_amd64.buildinfo 501291399ea7bf30fa28db214df38283a9927232 136460 python3-pychopper_2.7.2-1_all.deb Checksums-Sha256: b987520d35e0a204c5cf55cc117b8bd52797ec9542fad01f74b74602f98e872c 10483 pychopper_2.7.2-1_amd64.buildinfo 2c430c54f6ebee70a18252e9106eb5e189aad6f385a21244ee6c630fba4c7686 136460 python3-pychopper_2.7.2-1_all.deb Files: d21f8fa41a60e2a1c44921c854013f06 10483 science optional pychopper_2.7.2-1_amd64.buildinfo dee1a567a5b8f920565cc613f2a7fffd 136460 python optional python3-pychopper_2.7.2-1_all.deb Fri May 5 06:14:51 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.cRqQZaMe/pychopper_2.7.2-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.cRqQZaMe/pychopper_2.7.2-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.cRqQZaMe/pychopper_2.7.2-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.cRqQZaMe/b1/pychopper_2.7.2-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.cRqQZaMe/b2/pychopper_2.7.2-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.818s) 0.818s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.019s) 0.019s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Fri May 5 06:14:52 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Fri May 5 06:14:52 UTC 2023 I: pychopper from bookworm built successfully and reproducibly on amd64. Fri May 5 06:14:53 UTC 2023 I: Submitting .buildinfo files to external archives: Fri May 5 06:14:53 UTC 2023 I: Submitting 12K b1/pychopper_2.7.2-1_amd64.buildinfo.asc Fri May 5 06:14:54 UTC 2023 I: Submitting 12K b2/pychopper_2.7.2-1_amd64.buildinfo.asc Fri May 5 06:14:55 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri May 5 06:14:55 UTC 2023 I: Done submitting .buildinfo files. Fri May 5 06:14:55 UTC 2023 I: Removing signed pychopper_2.7.2-1_amd64.buildinfo.asc files: removed './b1/pychopper_2.7.2-1_amd64.buildinfo.asc' removed './b2/pychopper_2.7.2-1_amd64.buildinfo.asc'