Sun Apr 16 19:55:27 UTC 2023 I: starting to build megadepth/bookworm/amd64 on jenkins on '2023-04-16 19:55' Sun Apr 16 19:55:27 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_28/5942/console.log Sun Apr 16 19:55:27 UTC 2023 I: Downloading source for bookworm/megadepth=1.2.0-4 --2023-04-16 19:55:28-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/megadepth/megadepth_1.2.0-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2035 (2.0K) [text/prs.lines.tag] Saving to: ‘megadepth_1.2.0-4.dsc’ 0K . 100% 104M=0s 2023-04-16 19:55:28 (104 MB/s) - ‘megadepth_1.2.0-4.dsc’ saved [2035/2035] Sun Apr 16 19:55:28 UTC 2023 I: megadepth_1.2.0-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: megadepth Binary: megadepth Architecture: any Version: 1.2.0-4 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/ChristopherWilks/megadepth Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/megadepth Vcs-Git: https://salsa.debian.org/med-team/megadepth.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, libhts-dev, libdeflate-dev, libbigwig-dev Package-List: megadepth deb science optional arch=any Checksums-Sha1: 7aef9daeed7767877da811dac182174612949199 251752 megadepth_1.2.0.orig.tar.gz 3a0ce65d432442402716816345bdee247112f5e5 8764 megadepth_1.2.0-4.debian.tar.xz Checksums-Sha256: d6b7674c644952e48f3a0ab4a54c5285ada9b44374b6e580e215ad9c9a96eaec 251752 megadepth_1.2.0.orig.tar.gz 4270c1f25640387cc3ce3bd529708a0bcfaa06f6ee6f36d8a6fae984b26b765a 8764 megadepth_1.2.0-4.debian.tar.xz Files: f6c99523e818f437ea4bde74c9baf5ab 251752 megadepth_1.2.0.orig.tar.gz 19adaaa0c00642f0cba2ed0bd4e122ed 8764 megadepth_1.2.0-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmLuhDkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtF8zg//e9v/UDgvNSUXPyhP7331sFVhxfwbKMRn O4UN9xn0SdSQmYR/5sXfc+iugiZcTDnh249Xt+Th99/ZdFJkaivulAXLeU/AScmj bq0vdJPt2HOvkQ3Hva0MvJ1u9D0IcU/w9ECFLVv2VNJ6skzgjLq+q6z8RN0TyuuV JLD8NzFmrz3WK9OdKavUEv+NJjDUISYwhyxnbpwm/raB052D1+5dzy4MK6JQriOv ou2B6vLKR+GgvIKp9fHMpdooDDA6LtDbx8Xel8gh8oiw7aaSIQ4ghvG8HEb0uc7A UYgtU1fIUKruIco8zYU3L65GFRW8svb+gJ4SjEJ3E5FwhVmWjQhoW5W4dzjm0AwH JB43Xrvu6V2pFthqnQhSWx60R/4pkIZywOIHv7Pfi5Y/JiilhC7U9zqi9o5cEMpd v+3lZ1iG2VXktfAwQrnMzVgiNL32zgnXM2l1hgjkPZogEu+6XrlwxfcP/MrQERzF d/tFJk1BtwuAkGDGpWssbzO8giMKYOL4ltJl+vohoeRKg6woWWMwyDWasDX6uRvH XLcH3u86Iuxmcc9LO1rge7PC6Rb/lTjlmVgiIBoddUXDNGZ2SZrDGQGTtA1SfYXv vIGfh4jf58Q0xVn6F3XwhxRNm6EzGqs0s0lVILIyEMBwyPwD5zAKIhRQsvGRgZQb kL4A0nHrMc8= =aG9X -----END PGP SIGNATURE----- Sun Apr 16 19:55:28 UTC 2023 I: Checking whether the package is not for us Sun Apr 16 19:55:28 UTC 2023 I: Starting 1st build on remote node ionos15-amd64.debian.net. Sun Apr 16 19:55:28 UTC 2023 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Sun Apr 16 19:56:15 UTC 2023 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat May 18 14:18:31 -12 2024 I: pbuilder-time-stamp: 1716085111 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [megadepth_1.2.0-4.dsc] I: copying [./megadepth_1.2.0.orig.tar.gz] I: copying [./megadepth_1.2.0-4.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Aug 6 03:09:45 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./megadepth_1.2.0-4.dsc: no acceptable signature found dpkg-source: info: extracting megadepth in megadepth-1.2.0 dpkg-source: info: unpacking megadepth_1.2.0.orig.tar.gz dpkg-source: info: unpacking megadepth_1.2.0-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying addCurlLibrary.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2169654/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f5b675163c9c4cbd8c432ed0b5b39517' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2169654' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.EFfFZKsF/pbuilderrc_0Nu3 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.EFfFZKsF/b1 --logfile b1/build.log megadepth_1.2.0-4.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 6.1.0-0.deb11.5-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.12-1~bpo11+1 (2023-03-05) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Feb 12 2023 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 2023 more -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Feb 12 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/2169654/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libhts-dev, libdeflate-dev, libbigwig-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libdeflate-dev; however: Package libdeflate-dev is not installed. pbuilder-satisfydepends-dummy depends on libbigwig-dev; however: Package libbigwig-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbigwig-dev{a} libbigwig0{a} libbrotli1{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libhts-dev{a} libhts3{a} libhtscodecs2{a} libicu72{a} libjsoncpp25{a} libldap-2.5-0{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 59 newly installed, 0 to remove and 0 not upgraded. Need to get 36.6 MB of archives. After unpacking 134 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 procps amd64 2:4.0.2-3 [709 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b3 [687 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libarchive13 amd64 3.6.2-1 [343 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-8 [386 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libjsoncpp25 amd64 1.9.5-4 [78.6 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 librhash0 amd64 1.4.3-3 [134 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libuv1 amd64 1.44.2-1 [140 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 cmake-data all 3.25.1-1 [2026 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 cmake amd64 3.25.1-1 [8692 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.88.1-8 [380 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 libbigwig0 amd64 0.4.7+dfsg-3 [27.9 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libbigwig-dev amd64 0.4.7+dfsg-3 [37.2 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libcurl4-gnutls-dev amd64 7.88.1-8 [481 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libdeflate-dev amd64 1.14-1 [53.3 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libhtscodecs2 amd64 1.3.0-4 [87.5 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libhts3 amd64 1.16+ds-3 [430 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 liblzma-dev amd64 5.4.1-0.2 [260 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 libhts-dev amd64 1.16+ds-3 [1601 kB] Fetched 36.6 MB in 0s (82.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.2-3_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.2-3_amd64.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.17+nmu1_all.deb ... 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Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Setting up autotools-dev (20220109.1) ... Setting up libuv1:amd64 (1.44.2-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libproc2-0:amd64 (2:4.0.2-3) ... Setting up autopoint (0.21-12) ... Setting up libjsoncpp25:amd64 (1.9.5-4) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up autoconf (2.71-3) ... Setting up liblzma-dev:amd64 (5.4.1-0.2) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up librhash0:amd64 (1.4.3-3) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up procps (2:4.0.2-3) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up cmake-data (3.25.1-1) ... Setting up libdeflate-dev:amd64 (1.14-1) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.1+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libarchive13:amd64 (3.6.2-1) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libcurl4:amd64 (7.88.1-8) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3-gnutls:amd64 (7.88.1-8) ... Setting up libbigwig0:amd64 (0.4.7+dfsg-3) ... Setting up libcurl4-gnutls-dev:amd64 (7.88.1-8) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up cmake (3.25.1-1) ... Setting up libhts3:amd64 (1.16+ds-3) ... Setting up libbigwig-dev:amd64 (0.4.7+dfsg-3) ... Setting up libhts-dev:amd64 (1.16+ds-3) ... Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/megadepth-1.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../megadepth_1.2.0-4_source.changes dpkg-buildpackage: info: source package megadepth dpkg-buildpackage: info: source version 1.2.0-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Mohammed Bilal dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean if [ ! -r CMakeLists.txt ]; then ln -s CMakeLists.txt.ci CMakeLists.txt; fi #if [ ! -d htslib ]; then mkdir -p htslib; ln -s /usr/lib/`dpkg-architecture -qDEB_BUILD_MULTIARCH`/libhts.a htslib/; fi #if [ ! -d libBigWig ]; then mkdir -p libBigWig; ln -s /usr/lib/`dpkg-architecture -qDEB_BUILD_MULTIARCH`/libBigWig.a libBigWig/; fi #if [ ! -d libdeflate ]; then mkdir -p libdeflate; ln -s /usr/lib/`dpkg-architecture -qDEB_BUILD_MULTIARCH`/libdeflate.a libdeflate/; fi #if [ ! -d zlib ]; then mkdir -p zlib; ln -s /usr/lib/`dpkg-architecture -qDEB_BUILD_MULTIARCH`/libz.a zlib/; fi dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/megadepth-1.2.0' dh_auto_clean if [ -d zlib_ci ]; then rmdir zlib_ci; fi if [ -d libBigWig_ci ]; then rmdir libBigWig_ci; fi if [ -d libdeflate_ci ]; then rmdir libdeflate_ci; fi if [ -d htslib_ci ]; then rmdir htslib_ci; fi rm -rf htslib libbigwig libBigWig libdeflate libz zlib rm CMakeLists.txt make[1]: Leaving directory '/build/megadepth-1.2.0' dh_clean debian/rules binary if [ ! -r CMakeLists.txt ]; then ln -s CMakeLists.txt.ci CMakeLists.txt; fi #if [ ! -d htslib ]; then mkdir -p htslib; ln -s /usr/lib/`dpkg-architecture -qDEB_BUILD_MULTIARCH`/libhts.a htslib/; fi #if [ ! -d libBigWig ]; then mkdir -p libBigWig; ln -s /usr/lib/`dpkg-architecture -qDEB_BUILD_MULTIARCH`/libBigWig.a libBigWig/; fi #if [ ! -d libdeflate ]; then mkdir -p libdeflate; ln -s /usr/lib/`dpkg-architecture -qDEB_BUILD_MULTIARCH`/libdeflate.a libdeflate/; fi #if [ ! -d zlib ]; then mkdir -p zlib; ln -s /usr/lib/`dpkg-architecture -qDEB_BUILD_MULTIARCH`/libz.a zlib/; fi dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/megadepth-1.2.0/obj-x86_64-linux-gnu dh_auto_build cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/megadepth-1.2.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/megadepth-1.2.0 -B/build/megadepth-1.2.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/megadepth-1.2.0/obj-x86_64-linux-gnu/CMakeFiles /build/megadepth-1.2.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/megadepth-1.2.0/obj-x86_64-linux-gnu' make -f CMakeFiles/megadepth_dynamic.dir/build.make CMakeFiles/megadepth_dynamic.dir/depend make[3]: Entering directory '/build/megadepth-1.2.0/obj-x86_64-linux-gnu' cd /build/megadepth-1.2.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/megadepth-1.2.0 /build/megadepth-1.2.0 /build/megadepth-1.2.0/obj-x86_64-linux-gnu /build/megadepth-1.2.0/obj-x86_64-linux-gnu /build/megadepth-1.2.0/obj-x86_64-linux-gnu/CMakeFiles/megadepth_dynamic.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/megadepth-1.2.0/obj-x86_64-linux-gnu' make -f CMakeFiles/megadepth_dynamic.dir/build.make CMakeFiles/megadepth_dynamic.dir/build make[3]: Entering directory '/build/megadepth-1.2.0/obj-x86_64-linux-gnu' [ 50%] Building CXX object CMakeFiles/megadepth_dynamic.dir/megadepth.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/megadepth-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -DMEGADEPTH_VERSION="\"`cat ../VERSION`\"" -std=gnu++11 -MD -MT CMakeFiles/megadepth_dynamic.dir/megadepth.cpp.o -MF CMakeFiles/megadepth_dynamic.dir/megadepth.cpp.o.d -o CMakeFiles/megadepth_dynamic.dir/megadepth.cpp.o -c /build/megadepth-1.2.0/megadepth.cpp /build/megadepth-1.2.0/megadepth.cpp: In instantiation of 'int go(const char*, int, const char**, Op, htsFile*, bool) [with T = double; htsFile = htsFile]': /build/megadepth-1.2.0/megadepth.cpp:3504:26: required from here /build/megadepth-1.2.0/megadepth.cpp:3369:72: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] 3369 | fprintf(stderr,"total number of annotations in collapsed: %u\n",num_sizes); | ~^ ~~~~~~~~~ | | | | | long int | unsigned int | %lu /build/megadepth-1.2.0/megadepth.cpp: In instantiation of 'int go(const char*, int, const char**, Op, htsFile*, bool) [with T = long int; htsFile = htsFile]': /build/megadepth-1.2.0/megadepth.cpp:3506:24: required from here /build/megadepth-1.2.0/megadepth.cpp:3369:72: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] 3369 | fprintf(stderr,"total number of annotations in collapsed: %u\n",num_sizes); | ~^ ~~~~~~~~~ | | | | | long int | unsigned int | %lu [100%] Linking CXX executable megadepth_dynamic /usr/bin/cmake -E cmake_link_script CMakeFiles/megadepth_dynamic.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/megadepth-1.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -DMEGADEPTH_VERSION="\"`cat ../VERSION`\"" -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/megadepth_dynamic.dir/megadepth.cpp.o -o megadepth_dynamic -lhts -lBigWig -lcurl -ldeflate -lz make[3]: Leaving directory '/build/megadepth-1.2.0/obj-x86_64-linux-gnu' [100%] Built target megadepth_dynamic make[2]: Leaving directory '/build/megadepth-1.2.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/megadepth-1.2.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/megadepth-1.2.0/obj-x86_64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/megadepth-1.2.0' dh_auto_install mkdir -p debian/megadepth/usr/bin cp obj-*/megadepth_dynamic debian/megadepth/usr/bin/megadepth make[1]: Leaving directory '/build/megadepth-1.2.0' dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/megadepth-1.2.0' dh_installman make[1]: Leaving directory '/build/megadepth-1.2.0' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'megadepth-dbgsym' in '../megadepth-dbgsym_1.2.0-4_amd64.deb'. dpkg-deb: building package 'megadepth' in '../megadepth_1.2.0-4_amd64.deb'. dpkg-genbuildinfo --build=binary -O../megadepth_1.2.0-4_amd64.buildinfo dpkg-genchanges --build=binary -O../megadepth_1.2.0-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2169654 and its subdirectories I: Current time: Sat May 18 14:19:17 -12 2024 I: pbuilder-time-stamp: 1716085157 Sun Apr 16 19:56:16 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Sun Apr 16 19:56:16 UTC 2023 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Sun Apr 16 20:00:31 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Sun Apr 16 20:00:31 UTC 2023 I: megadepth_1.2.0-4_amd64.changes: Format: 1.8 Date: Sat, 06 Aug 2022 18:13:55 +0530 Source: megadepth Binary: megadepth megadepth-dbgsym Architecture: amd64 Version: 1.2.0-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Mohammed Bilal Description: megadepth - computes coverage from BigWig and BAM sequencing files Closes: 1016454 Changes: megadepth (1.2.0-4) unstable; urgency=medium . * Team upload. * d/t/control : disable tests on s390 (Closes: #1016454) Checksums-Sha1: c616e8a4c2593aac64eaa9d1b005b9cabab67102 855396 megadepth-dbgsym_1.2.0-4_amd64.deb 32ce121390ec6f5e103f8d191ab49d32db7ec55a 6166 megadepth_1.2.0-4_amd64.buildinfo 6895fd0dc9a9818f3fa8a032f9f46a139b01a2e1 79988 megadepth_1.2.0-4_amd64.deb Checksums-Sha256: fbee0a9f4f0cb18452ca0d076ce362d3574b6692597468b05a96f3dff6846a69 855396 megadepth-dbgsym_1.2.0-4_amd64.deb 73edc5ecf4db7c2579ac0dd71fd8caecab33cced5b214820de938e53d34f4d5c 6166 megadepth_1.2.0-4_amd64.buildinfo baeffb9b51d71d9175c689a022a37e556045c9c055b2aec5f0d0f5911982a8ae 79988 megadepth_1.2.0-4_amd64.deb Files: 5810358d83482f98966403d84f863bf4 855396 debug optional megadepth-dbgsym_1.2.0-4_amd64.deb ae1a5613fdfedbd20cb8bf65849a1186 6166 science optional megadepth_1.2.0-4_amd64.buildinfo d2bfc9c24372a611b7c051d9546dc095 79988 science optional megadepth_1.2.0-4_amd64.deb Sun Apr 16 20:00:35 UTC 2023 I: diffoscope 240 will be used to compare the two builds: W: /var/lib/schroot/session/jenkins-d-i-sid-5fef42d0-3c6c-4a0a-9716-d4f3155784bd: Failed to stat file: No such file or directory W: /var/lib/schroot/session/jenkins-d-i-sid-280e0f46-48eb-4618-93cc-6f8cf2133123: Failed to stat file: No such file or directory # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.EFfFZKsF/megadepth_1.2.0-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.EFfFZKsF/megadepth_1.2.0-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.EFfFZKsF/megadepth_1.2.0-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.EFfFZKsF/b1/megadepth_1.2.0-4_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.EFfFZKsF/b2/megadepth_1.2.0-4_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.477s) 0.477s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.041s) 0.041s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Sun Apr 16 20:05:23 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Sun Apr 16 20:05:23 UTC 2023 I: megadepth from bookworm built successfully and reproducibly on amd64. Sun Apr 16 20:05:24 UTC 2023 I: Submitting .buildinfo files to external archives: Sun Apr 16 20:05:24 UTC 2023 I: Submitting 8.0K b1/megadepth_1.2.0-4_amd64.buildinfo.asc Sun Apr 16 20:05:25 UTC 2023 I: Submitting 8.0K b2/megadepth_1.2.0-4_amd64.buildinfo.asc Sun Apr 16 20:05:26 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Apr 16 20:05:26 UTC 2023 I: Done submitting .buildinfo files. Sun Apr 16 20:05:26 UTC 2023 I: Removing signed megadepth_1.2.0-4_amd64.buildinfo.asc files: removed './b1/megadepth_1.2.0-4_amd64.buildinfo.asc' removed './b2/megadepth_1.2.0-4_amd64.buildinfo.asc'