Tue May 2 22:18:29 UTC 2023 I: starting to build libobjcryst/bookworm/amd64 on jenkins on '2023-05-02 22:18' Tue May 2 22:18:29 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_27/12302/console.log Tue May 2 22:18:29 UTC 2023 I: Downloading source for bookworm/libobjcryst=2022.1.4+ds1-2 --2023-05-02 22:18:30-- http://cdn-fastly.deb.debian.org/debian/pool/main/libo/libobjcryst/libobjcryst_2022.1.4%2bds1-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1646 (1.6K) [text/prs.lines.tag] Saving to: ‘libobjcryst_2022.1.4+ds1-2.dsc’ 0K . 100% 110M=0s 2023-05-02 22:18:30 (110 MB/s) - ‘libobjcryst_2022.1.4+ds1-2.dsc’ saved [1646/1646] Tue May 2 22:18:30 UTC 2023 I: libobjcryst_2022.1.4+ds1-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libobjcryst Binary: libobjcryst-dev, libobjcryst0 Architecture: amd64 Version: 2022.1.4+ds1-2 Maintainer: Debian PaN Maintainers Uploaders: Neil Williams , Picca Frédéric-Emmanuel , Homepage: https://github.com/diffpy/libobjcryst Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/science-team/libobjcryst Vcs-Git: https://salsa.debian.org/science-team/libobjcryst.git Testsuite: autopkgtest Testsuite-Triggers: g++ Build-Depends: debhelper-compat (= 13), scons, libcctbx-dev, libboost-dev, libnewmat10-dev Package-List: libobjcryst-dev deb libdevel optional arch=amd64 libobjcryst0 deb libs optional arch=amd64 Checksums-Sha1: 26b317fc61073fbd49580ae2b5dac1675616eb02 325348 libobjcryst_2022.1.4+ds1.orig.tar.xz 196dab1cc61d28e47681d84b87d69bf926d73aea 6992 libobjcryst_2022.1.4+ds1-2.debian.tar.xz Checksums-Sha256: 91a685484f3f955868de9b505d55e1a5f4323ce11f62c592834cd52eceaed9d9 325348 libobjcryst_2022.1.4+ds1.orig.tar.xz 6249be8ff3f8cb68f87e1cc283bd856dde534291e0c756c2d2c21481ccfbe67f 6992 libobjcryst_2022.1.4+ds1-2.debian.tar.xz Files: 4234772916707328c43f09692fdb1b95 325348 libobjcryst_2022.1.4+ds1.orig.tar.xz 4f646e946afd00173a73d487178553e1 6992 libobjcryst_2022.1.4+ds1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iIoEARYKADIWIQTumtb5BSD6EfafSCRHew2wJjpU2AUCY7sPFhQcc3RlZmFub3JA ZGViaWFuLm9yZwAKCRBHew2wJjpU2HzfAQDUCl+xxswkEbO/B0CQ1OdKKdKpn1dF plUeHyRJZ7JoSwD/Z7fQ6g23rTxaUhNN/wyaSN6SfWtA5dB4BZMKF1mGTAM= =ad8w -----END PGP SIGNATURE----- Tue May 2 22:18:30 UTC 2023 I: Checking whether the package is not for us Tue May 2 22:18:30 UTC 2023 I: Starting 1st build on remote node ionos1-amd64.debian.net. Tue May 2 22:18:30 UTC 2023 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Tue May 2 22:31:26 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue May 2 10:18:34 -12 2023 I: pbuilder-time-stamp: 1683065914 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libobjcryst_2022.1.4+ds1-2.dsc] I: copying [./libobjcryst_2022.1.4+ds1.orig.tar.xz] I: copying [./libobjcryst_2022.1.4+ds1-2.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Jan 8 06:44:38 2023 -12 gpgv: using EDDSA key EE9AD6F90520FA11F69F4824477B0DB0263A54D8 gpgv: issuer "stefanor@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libobjcryst_2022.1.4+ds1-2.dsc: no acceptable signature found dpkg-source: info: extracting libobjcryst in libobjcryst-2022.1.4+ds1 dpkg-source: info: unpacking libobjcryst_2022.1.4+ds1.orig.tar.xz dpkg-source: info: unpacking libobjcryst_2022.1.4+ds1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying scons_debian.patch dpkg-source: info: applying fix-example.patch dpkg-source: info: applying symmetry-first.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3930307/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='5f8ad333fe9046d29ccee51270bfad79' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3930307' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fCFqzkDk/pbuilderrc_ED1A --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fCFqzkDk/b1 --logfile b1/build.log libobjcryst_2022.1.4+ds1-2.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 5.10.0-22-amd64 #1 SMP Debian 5.10.178-3 (2023-04-22) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 04:31 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar -rwxr-xr-x 1 root root 14520 Nov 2 04:31 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/3930307/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), scons, libcctbx-dev, libboost-dev, libnewmat10-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on scons; however: Package scons is not installed. pbuilder-satisfydepends-dummy depends on libcctbx-dev; however: Package libcctbx-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libnewmat10-dev; however: Package libnewmat10-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libann-cctbx-dev{a} libann-cctbx0{a} libarchive-zip-perl{a} libboost-dev{a} libboost-python-dev{a} libboost-python1.74-dev{a} libboost-python1.74.0{a} libboost1.74-dev{a} libbrotli1{a} libcbf1{a} libccp4-data{a} libccp4-dev{a} libccp4c0{a} libccp4f0{a} libcctbx-dev{a} libcctbx0{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libhdf5-103-1{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libmmdb2-0{a} libnewmat10-dev{a} libnewmat10ldbl{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libsz2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} scons{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 85 newly installed, 0 to remove and 0 not upgraded. Need to get 53.0 MB of archives. After unpacking 322 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 libaec0 amd64 1.0.6-1+b1 [21.1 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libann-cctbx0 amd64 1.1.2+doc-9+b1 [32.4 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 libann-cctbx-dev amd64 1.1.2+doc-9+b1 [44.6 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-20 [9510 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libboost-python1.74.0 amd64 1.74.0+ds1-20 [289 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6 [4738 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get: 53 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6 [615 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-2 [131 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libboost-python1.74-dev amd64 1.74.0+ds1-20 [310 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libboost-python-dev amd64 1.74.0.3 [4632 B] Get: 62 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-9 [386 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 libsz2 amd64 1.0.6-1+b1 [7804 B] Get: 72 http://deb.debian.org/debian bookworm/main amd64 libhdf5-103-1 amd64 1.10.8+repack1-1 [1237 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 libcbf1 amd64 0.9.7+dfsg1-2+b2 [353 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 libccp4-data all 8.0.0-2 [62.3 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 libccp4c0 amd64 8.0.0-2 [88.5 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libmmdb2-0 amd64 2.0.22-1 [338 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 libccp4f0 amd64 8.0.0-2 [210 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libccp4-dev amd64 8.0.0-2 [42.8 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 libcctbx0 amd64 2022.9+ds2+~3.11.2+ds1-6+b1 [2369 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libcctbx-dev amd64 2022.9+ds2+~3.11.2+ds1-6+b1 [1148 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libnewmat10ldbl amd64 1.10.4-8 [147 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 libnewmat10-dev amd64 1.10.4-8 [140 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 scons all 4.4.0+dfsg-1 [663 kB] Fetched 53.0 MB in 2s (28.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. 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Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../3-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_amd64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20346 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... 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Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../23-libelf1_0.188-2.1_amd64.deb ... Unpacking libelf1:amd64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1_amd64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../25-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../26-libxml2_2.9.14+dfsg-1.2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-12_amd64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package libaec0:amd64. Preparing to unpack .../31-libaec0_1.0.6-1+b1_amd64.deb ... Unpacking libaec0:amd64 (1.0.6-1+b1) ... Selecting previously unselected package libann-cctbx0. Preparing to unpack .../32-libann-cctbx0_1.1.2+doc-9+b1_amd64.deb ... Unpacking libann-cctbx0 (1.1.2+doc-9+b1) ... 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Unpacking libboost-python1.74-dev (1.74.0+ds1-20) ... Selecting previously unselected package libboost-python-dev. Preparing to unpack .../50-libboost-python-dev_1.74.0.3_amd64.deb ... Unpacking libboost-python-dev (1.74.0.3) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../51-libbrotli1_1.0.9-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b6) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../52-libsasl2-modules-db_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../53-libsasl2-2_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../54-libldap-2.5-0_2.5.13+dfsg-5_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../55-libnghttp2-14_1.52.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.52.0-1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../56-libpsl5_0.21.2-1_amd64.deb ... Unpacking libpsl5:amd64 (0.21.2-1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../57-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../58-libssh2-1_1.10.0-3+b1_amd64.deb ... Unpacking libssh2-1:amd64 (1.10.0-3+b1) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../59-libcurl4_7.88.1-9_amd64.deb ... Unpacking libcurl4:amd64 (7.88.1-9) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../60-libsz2_1.0.6-1+b1_amd64.deb ... Unpacking libsz2:amd64 (1.0.6-1+b1) ... Selecting previously unselected package libhdf5-103-1:amd64. Preparing to unpack .../61-libhdf5-103-1_1.10.8+repack1-1_amd64.deb ... Unpacking libhdf5-103-1:amd64 (1.10.8+repack1-1) ... Selecting previously unselected package libcbf1:amd64. Preparing to unpack .../62-libcbf1_0.9.7+dfsg1-2+b2_amd64.deb ... Unpacking libcbf1:amd64 (0.9.7+dfsg1-2+b2) ... Selecting previously unselected package libccp4-data. Preparing to unpack .../63-libccp4-data_8.0.0-2_all.deb ... Unpacking libccp4-data (8.0.0-2) ... Selecting previously unselected package libccp4c0:amd64. Preparing to unpack .../64-libccp4c0_8.0.0-2_amd64.deb ... Unpacking libccp4c0:amd64 (8.0.0-2) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../65-libgfortran5_12.2.0-14_amd64.deb ... Unpacking libgfortran5:amd64 (12.2.0-14) ... Selecting previously unselected package libmmdb2-0:amd64. Preparing to unpack .../66-libmmdb2-0_2.0.22-1_amd64.deb ... Unpacking libmmdb2-0:amd64 (2.0.22-1) ... Selecting previously unselected package libccp4f0:amd64. Preparing to unpack .../67-libccp4f0_8.0.0-2_amd64.deb ... Unpacking libccp4f0:amd64 (8.0.0-2) ... Selecting previously unselected package libccp4-dev:amd64. Preparing to unpack .../68-libccp4-dev_8.0.0-2_amd64.deb ... Unpacking libccp4-dev:amd64 (8.0.0-2) ... Selecting previously unselected package libcctbx0. Preparing to unpack .../69-libcctbx0_2022.9+ds2+~3.11.2+ds1-6+b1_amd64.deb ... Unpacking libcctbx0 (2022.9+ds2+~3.11.2+ds1-6+b1) ... Selecting previously unselected package libcctbx-dev. Preparing to unpack .../70-libcctbx-dev_2022.9+ds2+~3.11.2+ds1-6+b1_amd64.deb ... Unpacking libcctbx-dev (2022.9+ds2+~3.11.2+ds1-6+b1) ... Selecting previously unselected package libnewmat10ldbl. Preparing to unpack .../71-libnewmat10ldbl_1.10.4-8_amd64.deb ... Unpacking libnewmat10ldbl (1.10.4-8) ... Selecting previously unselected package libnewmat10-dev. Preparing to unpack .../72-libnewmat10-dev_1.10.4-8_amd64.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/libobjcryst-2022.1.4+ds1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libobjcryst_2022.1.4+ds1-2_source.changes dpkg-buildpackage: info: source package libobjcryst dpkg-buildpackage: info: source version 2022.1.4+ds1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Stefano Rivera dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/libobjcryst-2022.1.4+ds1' dh_auto_clean rm -f -r .sconsign.dblite debian/objcryst sconscript.local site_scons/gitarchive.cfg rm -f examples/objcryst_test find . -name "*.pyc" -delete make[1]: Leaving directory '/build/libobjcryst-2022.1.4+ds1' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs debian/rules override_dh_auto_install make[1]: Entering directory '/build/libobjcryst-2022.1.4+ds1' mkdir -p debian/objcryst/usr/ LIBRARY_PATH="/usr/lib/x86_64-linux-gnu/" scons -Q build=debug prefix=. with_shared_cctbx=1 install g++ -o debian/objcryst/usr/ObjCryst/Quirks/VFNDebug.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/Quirks/VFNDebug.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/Atom.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/Atom.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/CIF.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/CIF.cpp debian/objcryst/usr/ObjCryst/ObjCryst/CIF.cpp: In function 'ObjCryst::Crystal* ObjCryst::CreateCrystalFromCIF(CIF&, bool, bool, bool, bool, Crystal*)': debian/objcryst/usr/ObjCryst/ObjCryst/CIF.cpp:1045:16: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] 1045 | catch(exception) | ^~~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/CIF.cpp:1066:16: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] 1066 | catch(exception) | ^~~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/CIF.cpp:1088:16: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] 1088 | catch(exception) | ^~~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/CIF.cpp:1138:22: warning: catching polymorphic type 'class std::invalid_argument' by value [-Wcatch-value=] 1138 | catch(invalid_argument) | ^~~~~~~~~~~~~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/CIF.cpp:1176:29: warning: catching polymorphic type 'class cctbx::error' by value [-Wcatch-value=] 1176 | catch(cctbx::error) | ^~~~~ g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/Crystal.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/Crystal.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/DiffractionDataSingleCrystal.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/DiffractionDataSingleCrystal.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/Exception.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/Exception.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/IO.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/IO.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/Indexing.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/Indexing.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/Molecule.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/Molecule.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/PDF.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/PDF.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/Polyhedron.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/Polyhedron.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/PowderPattern.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/PowderPattern.cpp debian/objcryst/usr/ObjCryst/ObjCryst/PowderPattern.cpp: In function 'std::vector ObjCryst::spgExtinctionFingerprint(Crystal&, const cctbx::sgtbx::space_group&)': debian/objcryst/usr/ObjCryst/ObjCryst/PowderPattern.cpp:6853:17: warning: comparison of integer expressions of different signedness: 'long int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 6853 | if(i>=fingerprint.size()) cout<<"WHOOOOOOOOOOOOOPS"< ObjCryst::ScatteringPowerAtom::GetResonantScattFactReal(const ObjCryst::ScatteringData&, int) const': debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.cpp:696:23: warning: catching polymorphic type 'class cctbx::error' by value [-Wcatch-value=] 696 | catch(cctbx::error) | ^~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.cpp: In member function 'virtual CrystMatrix ObjCryst::ScatteringPowerAtom::GetResonantScattFactImag(const ObjCryst::ScatteringData&, int) const': debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.cpp:740:23: warning: catching polymorphic type 'class cctbx::error' by value [-Wcatch-value=] 740 | catch(cctbx::error) | ^~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.cpp: In member function 'std::string ObjCryst::ScatteringPowerAtom::GetElementName() const': debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.cpp:777:17: warning: catching polymorphic type 'class cctbx::error' by value [-Wcatch-value=] 777 | catch(cctbx::error) | ^~~~~ debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.cpp: In member function 'void ObjCryst::ScatteringPowerAtom::InitAtNeutronScattCoeffs()': debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.cpp:810:17: warning: catching polymorphic type 'class cctbx::error' by value [-Wcatch-value=] 810 | catch(cctbx::error) | ^~~~~ g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPowerSphere.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPowerSphere.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/SpaceGroup.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/SpaceGroup.cpp debian/objcryst/usr/ObjCryst/ObjCryst/SpaceGroup.cpp: In member function 'void ObjCryst::SpaceGroup::InitSpaceGroup(const std::string&)': debian/objcryst/usr/ObjCryst/ObjCryst/SpaceGroup.cpp:591:20: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] 591 | catch(exception ex1) | ^~~ debian/objcryst/usr/ObjCryst/ObjCryst/SpaceGroup.cpp:602:23: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] 602 | catch(exception ex2) | ^~~ debian/objcryst/usr/ObjCryst/ObjCryst/SpaceGroup.cpp:647:20: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] 647 | catch(exception ex) | ^~ g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/UnitCell.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/UnitCell.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/ZScatterer.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/ZScatterer.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor_001.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor_001.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor_002.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor_002.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor_067.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor_067.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor_097.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor_097.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor_230.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor_230.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor_centro.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/geomStructFactor_centro.cpp g++ -o debian/objcryst/usr/ObjCryst/ObjCryst/test.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/ObjCryst/test.cpp g++ -o debian/objcryst/usr/ObjCryst/RefinableObj/GlobalOptimObj.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/RefinableObj/GlobalOptimObj.cpp debian/objcryst/usr/ObjCryst/RefinableObj/GlobalOptimObj.cpp: In member function 'virtual void ObjCryst::MonteCarloObj::MultiRunOptimize(long int&, long int&, bool, double, double)': debian/objcryst/usr/ObjCryst/RefinableObj/GlobalOptimObj.cpp:847:44: warning: '%f' directive writing between 3 and 317 bytes into a region of size between 0 and 18 [-Wformat-overflow=] 847 | sprintf(costAsChar,"-Run#%ld-Cost-%f",abs(nbCycle),this->GetLogLikelihood()); | ^~ debian/objcryst/usr/ObjCryst/RefinableObj/GlobalOptimObj.cpp:847:29: note: assuming directive output of 8 bytes 847 | sprintf(costAsChar,"-Run#%ld-Cost-%f",abs(nbCycle),this->GetLogLikelihood()); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:906, from /usr/include/c++/12/cstdio:42, from /usr/include/c++/12/ext/string_conversions.h:43, from /usr/include/c++/12/bits/basic_string.h:3960, from /usr/include/c++/12/string:53, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/iomanip:40, from debian/objcryst/usr/ObjCryst/RefinableObj/GlobalOptimObj.cpp:23: In function 'int sprintf(char*, const char*, ...)', inlined from 'virtual void ObjCryst::MonteCarloObj::MultiRunOptimize(long int&, long int&, bool, double, double)' at debian/objcryst/usr/ObjCryst/RefinableObj/GlobalOptimObj.cpp:847:17: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 16 and 348 bytes into a destination of size 30 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -o debian/objcryst/usr/ObjCryst/RefinableObj/IO.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/RefinableObj/IO.cpp g++ -o debian/objcryst/usr/ObjCryst/RefinableObj/LSQNumObj.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/RefinableObj/LSQNumObj.cpp g++ -o debian/objcryst/usr/ObjCryst/RefinableObj/RefinableObj.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/RefinableObj/RefinableObj.cpp g++ -o debian/objcryst/usr/ObjCryst/RefinableObj/Simplex.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/RefinableObj/Simplex.cpp g++ -o debian/objcryst/usr/ObjCryst/RefinableObj/Tracker.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/RefinableObj/Tracker.cpp g++ -o debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.os -c -std=c++11 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libobjcryst-2022.1.4+ds1/debian/objcryst/usr=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/cctbx/ -fPIC -DBOOST_ALL_NO_LIB -Idebian/objcryst/usr/cctbx/include -Idebian/objcryst/usr -Idebian/objcryst/usr/include debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp: In instantiation of 'void CrystVector::operator*=(T) [with T = bool]': debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp:1054:16: required from here debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp:221:41: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 221 | for(int i=mNumElements;i>0;i--) *p++ *= num; | ~~~~~^~~~~~ debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp: In instantiation of 'void CrystVector::operator*=(const CrystVector&) [with T = bool]': debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp:1054:16: required from here debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp:238:44: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 238 | for(int i=mNumElements;i>0;i--) { *p *= *rhs; p++ ; rhs++;} | ~~~^~~~~~~ debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp:243:44: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 243 | for(int i=mNumElements;i>0;i--) { *p *= *p; p++ ;} | ~~~^~~~~ debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp: In instantiation of 'void CrystVector::operator/=(T) [with T = bool]': debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp:1054:16: required from here debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp:251:41: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 251 | for(int i=mNumElements;i>0;i--) *p++ *= d; | ~~~~~^~~~ debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp: In instantiation of 'void CrystMatrix::operator*=(T) [with T = bool]': debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp:1056:16: required from here debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp:586:41: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 586 | for(int i=0;i::operator*=(const CrystMatrix&) [with T = bool]': debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp:1056:16: required from here debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.cpp:600:41: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 600 | for(int i=0;i'debian/objcryst/usr/libObjCryst.so.0.0.1' 'debian/objcryst/usr/libObjCryst.so'->'debian/objcryst/usr/libObjCryst.so.0.0.1' Install file: "debian/objcryst/usr/libObjCryst.so.0.0.1" as "debian/objcryst/usr/lib/libObjCryst.so.0.0.1" ldconfig -n debian/objcryst/usr/lib Install file: "debian/objcryst/usr/ObjCryst/version.h" as "debian/objcryst/usr/include/ObjCryst/version.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/Atom.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/Atom.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/CIF.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/CIF.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/Colours.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/Colours.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/Crystal.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/Crystal.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/DiffractionDataSingleCrystal.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/DiffractionDataSingleCrystal.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/General.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/General.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/GeomStructFactor.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/GeomStructFactor.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/IO.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/IO.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/Indexing.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/Indexing.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/Molecule.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/Molecule.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/PDF.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/PDF.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/Polyhedron.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/Polyhedron.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/PowderPattern.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/PowderPattern.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/PowderPatternBackgroundBayesianMinimiser.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/PowderPatternBackgroundBayesianMinimiser.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/ReflectionProfile.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/ReflectionProfile.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/Scatterer.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/Scatterer.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringCorr.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/ScatteringCorr.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringData.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/ScatteringData.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPower.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/ScatteringPower.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/ScatteringPowerSphere.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/ScatteringPowerSphere.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/SpaceGroup.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/SpaceGroup.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/UnitCell.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/UnitCell.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/ZScatterer.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/ZScatterer.h" Install file: "debian/objcryst/usr/ObjCryst/ObjCryst/test.h" as "debian/objcryst/usr/include/ObjCryst/ObjCryst/test.h" Install file: "debian/objcryst/usr/ObjCryst/RefinableObj/GlobalOptimObj.h" as "debian/objcryst/usr/include/ObjCryst/RefinableObj/GlobalOptimObj.h" Install file: "debian/objcryst/usr/ObjCryst/RefinableObj/IO.h" as "debian/objcryst/usr/include/ObjCryst/RefinableObj/IO.h" Install file: "debian/objcryst/usr/ObjCryst/RefinableObj/LSQNumObj.h" as "debian/objcryst/usr/include/ObjCryst/RefinableObj/LSQNumObj.h" Install file: "debian/objcryst/usr/ObjCryst/RefinableObj/RefinableObj.h" as "debian/objcryst/usr/include/ObjCryst/RefinableObj/RefinableObj.h" Install file: "debian/objcryst/usr/ObjCryst/RefinableObj/Simplex.h" as "debian/objcryst/usr/include/ObjCryst/RefinableObj/Simplex.h" Install file: "debian/objcryst/usr/ObjCryst/RefinableObj/Tracker.h" as "debian/objcryst/usr/include/ObjCryst/RefinableObj/Tracker.h" Install file: "debian/objcryst/usr/ObjCryst/CrystVector/CrystVector.h" as "debian/objcryst/usr/include/ObjCryst/CrystVector/CrystVector.h" Install file: "debian/objcryst/usr/ObjCryst/Quirks/VFNDebug.h" as "debian/objcryst/usr/include/ObjCryst/Quirks/VFNDebug.h" Install file: "debian/objcryst/usr/ObjCryst/Quirks/ci_string.h" as "debian/objcryst/usr/include/ObjCryst/Quirks/ci_string.h" iconv -f ISO-8859-1 -t UTF-8 debian/objcryst/usr/include/ObjCryst/ObjCryst/UnitCell.h > UnitCell.h mv UnitCell.h debian/objcryst/usr/include/ObjCryst/ObjCryst/UnitCell.h dh_installdirs dh_install dh_auto_install rm -f -r debian/objcryst/usr/newmat/ debian/objcryst/usr/cctbx/cctbx/ rm -f -r debian/objcryst/usr/ObjCryst/ debian/objcryst/usr/SConscript* rm -f -r debian/libobjcryst0/debian make[1]: Leaving directory '/build/libobjcryst-2022.1.4+ds1' dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libobjcryst0-dbgsym' in '../libobjcryst0-dbgsym_2022.1.4+ds1-2_amd64.deb'. dpkg-deb: building package 'libobjcryst0' in '../libobjcryst0_2022.1.4+ds1-2_amd64.deb'. dpkg-deb: building package 'libobjcryst-dev' in '../libobjcryst-dev_2022.1.4+ds1-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libobjcryst_2022.1.4+ds1-2_amd64.buildinfo dpkg-genchanges --build=binary -O../libobjcryst_2022.1.4+ds1-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3930307 and its subdirectories I: Current time: Tue May 2 10:31:25 -12 2023 I: pbuilder-time-stamp: 1683066685 Tue May 2 22:31:26 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Tue May 2 22:31:26 UTC 2023 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Tue May 2 22:42:05 UTC 2023 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Tue May 2 22:42:06 UTC 2023 I: libobjcryst_2022.1.4+ds1-2_amd64.changes: Format: 1.8 Date: Sun, 08 Jan 2023 14:44:04 -0400 Source: libobjcryst Binary: libobjcryst-dev libobjcryst0 libobjcryst0-dbgsym Architecture: amd64 Version: 2022.1.4+ds1-2 Distribution: unstable Urgency: medium Maintainer: Debian PaN Maintainers Changed-By: Stefano Rivera Description: libobjcryst-dev - Object-Oriented Crystallographic Library for C++ (headers) libobjcryst0 - Object-Oriented Crystallographic Library for C++ Changes: libobjcryst (2022.1.4+ds1-2) unstable; urgency=medium . * Team upload. * Remove the range check reversion patch. * Patch: Calculate constraints from symmetry before bounds-checking. Checksums-Sha1: 2b08fb189a677847072eda2600ea1629e5ec3e5f 99916 libobjcryst-dev_2022.1.4+ds1-2_amd64.deb 87b77c50bc0971ca279284b5d60fab3af27c8e17 10198016 libobjcryst0-dbgsym_2022.1.4+ds1-2_amd64.deb a6431674c447623bce5ed8428b08c0c57723794f 717632 libobjcryst0_2022.1.4+ds1-2_amd64.deb 718e695811a2692d987330dc660d5c8aee286fec 7489 libobjcryst_2022.1.4+ds1-2_amd64.buildinfo Checksums-Sha256: 76cb170a07221ef1e3438324f4ed148b2f0257b9c8a5f8d3c9f908aa94c75433 99916 libobjcryst-dev_2022.1.4+ds1-2_amd64.deb b31dea4799baf3c8b1dbc4e91b1cf6414acd26a9896670cf925b801667637746 10198016 libobjcryst0-dbgsym_2022.1.4+ds1-2_amd64.deb a2155351f2bb09711327744c87e402814d13b4e66a237f1c2d95cbb91a1d30bb 717632 libobjcryst0_2022.1.4+ds1-2_amd64.deb 0e8d31539c5e0f38b550c2c8d61900f40e93391c7dbc84e238e9be9ac077947d 7489 libobjcryst_2022.1.4+ds1-2_amd64.buildinfo Files: 7d9cae90134c2b39c24bd3f597dfe670 99916 libdevel optional libobjcryst-dev_2022.1.4+ds1-2_amd64.deb 0cc6fcf00ea6cc80267e23ec604f5124 10198016 debug optional libobjcryst0-dbgsym_2022.1.4+ds1-2_amd64.deb 47663a88c4832e1e3a9e9f92a8e3f985 717632 libs optional libobjcryst0_2022.1.4+ds1-2_amd64.deb 76a9a1c7a201eae56b5ccfa8a25d5096 7489 libs optional libobjcryst_2022.1.4+ds1-2_amd64.buildinfo Tue May 2 22:42:07 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.fCFqzkDk/libobjcryst_2022.1.4+ds1-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.fCFqzkDk/libobjcryst_2022.1.4+ds1-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.fCFqzkDk/libobjcryst_2022.1.4+ds1-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.fCFqzkDk/b1/libobjcryst_2022.1.4+ds1-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.fCFqzkDk/b2/libobjcryst_2022.1.4+ds1-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.460s) 0.460s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.136s) 0.136s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Tue May 2 22:42:08 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Tue May 2 22:42:08 UTC 2023 I: libobjcryst from bookworm built successfully and reproducibly on amd64. Tue May 2 22:42:09 UTC 2023 I: Submitting .buildinfo files to external archives: Tue May 2 22:42:09 UTC 2023 I: Submitting 12K b1/libobjcryst_2022.1.4+ds1-2_amd64.buildinfo.asc Tue May 2 22:42:10 UTC 2023 I: Submitting 12K b2/libobjcryst_2022.1.4+ds1-2_amd64.buildinfo.asc Tue May 2 22:42:10 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue May 2 22:42:10 UTC 2023 I: Done submitting .buildinfo files. Tue May 2 22:42:10 UTC 2023 I: Removing signed libobjcryst_2022.1.4+ds1-2_amd64.buildinfo.asc files: removed './b1/libobjcryst_2022.1.4+ds1-2_amd64.buildinfo.asc' removed './b2/libobjcryst_2022.1.4+ds1-2_amd64.buildinfo.asc'