Tue May 2 06:15:41 UTC 2023 I: starting to build htseq/bookworm/amd64 on jenkins on '2023-05-02 06:15' Tue May 2 06:15:41 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_15/9837/console.log Tue May 2 06:15:41 UTC 2023 I: Downloading source for bookworm/htseq=1.99.2-1 --2023-05-02 06:16:36-- http://cdn-fastly.deb.debian.org/debian/pool/main/h/htseq/htseq_1.99.2-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2161 (2.1K) [text/prs.lines.tag] Saving to: ‘htseq_1.99.2-1.dsc’ 0K .. 100% 119M=0s 2023-05-02 06:16:36 (119 MB/s) - ‘htseq_1.99.2-1.dsc’ saved [2161/2161] Tue May 2 06:16:36 UTC 2023 I: htseq_1.99.2-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: htseq Binary: python3-htseq Architecture: any Version: 1.99.2-1 Maintainer: Debian Med Packaging Team Uploaders: Diane Trout , Andreas Tille Homepage: https://www-huber.embl.de/users/anders/HTSeq/doc/overview.html Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/htseq Vcs-Git: https://salsa.debian.org/med-team/htseq.git Testsuite: autopkgtest-pkg-python Build-Depends: 2to3, debhelper-compat (= 13), dh-python, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython3 Package-List: python3-htseq deb python optional arch=any Checksums-Sha1: 67082c7ba03bac6b77ea36a13a835feed8f7210d 37031643 htseq_1.99.2.orig.tar.gz 995d99f2680ff839c27069bba5a765f96df17721 11080 htseq_1.99.2-1.debian.tar.xz Checksums-Sha256: 9c823bd7e5f96ea7194a50d587af40a43991e6340d89b8d070ec175dddb38b2a 37031643 htseq_1.99.2.orig.tar.gz c0092eabcbe1a9a88091eff8c5128492ab60fda51ee409274547408a571f7bad 11080 htseq_1.99.2-1.debian.tar.xz Files: ef2d4533905e7f1b0125ca5ca23666d8 37031643 htseq_1.99.2.orig.tar.gz edd804d982d1f8f7230cf3c599a67ac6 11080 htseq_1.99.2-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmHkaKERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFtpw//Whv91Lae3ab9ydC0zphwoo9WoAQTgSTf MDOCwpWlkchcL2qBn2JSBPzciaxhatnWUHP8YlEwzsJ0/0DW4famSPJb9nDORrfr SV2n0NYujO4cL6svuala1/AbwrLDuVWCh3BKNt5ZxOQ4TnvDKPLy69slQqUhe1X2 tefTzZ6pepCgcRIlEVtY+TUb+nFWxORzV9FUJsVbYImtTVqHIEYufgl3kQfca8/N QKBQ1SkYTUg0KC49VGOR0LQC44J/hH4RooRG3Wujlr+yY/bXnTpXPZZwehjU7qBB DxDFFgYzNCopIETd6wGwWxC191zjdGNifcwfKa7nccbDYQ5GrBpjB4NY//ckrIR2 GuiBCsMuoRXNwHnVIheuF12rAz4Icpnsn/cjrvnEFr7axtieR6ReNJewtUokKvMr jD/3cuMESIqMQnsn5POk6BV7vvAiqDDp8cnFTNVeC6/uZ1QH38LzMY9QfAAdGNSZ QXSFCZU8Ax9BMJ/62kj3ELXMAzEpZGDo4ye1lOAihXT+pMs9cuadmwt+6lj+k+2J VVE6NORTBHm+JPrYEPafJqj08Z/sefVVfl/o3nr2ZXUvtPfwYiNkYKFcJnt9PXpd baOqhTEbporGz19ykkvIo6Ukqw5hN2CEX3AaGdaiJCGHIzkyXqm12aCGD1NTVhAZ 03cd7StVVCk= =aFyb -----END PGP SIGNATURE----- Tue May 2 06:16:36 UTC 2023 I: Checking whether the package is not for us Tue May 2 06:16:36 UTC 2023 I: Starting 1st build on remote node ionos11-amd64.debian.net. Tue May 2 06:16:36 UTC 2023 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Tue May 2 06:19:30 UTC 2023 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 1 18:16:39 -12 2023 I: pbuilder-time-stamp: 1683008199 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [htseq_1.99.2-1.dsc] I: copying [./htseq_1.99.2.orig.tar.gz] I: copying [./htseq_1.99.2-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Jan 16 06:49:05 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./htseq_1.99.2-1.dsc: no acceptable signature found dpkg-source: info: extracting htseq in htseq-1.99.2 dpkg-source: info: unpacking htseq_1.99.2.orig.tar.gz dpkg-source: info: unpacking htseq_1.99.2-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3378947/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='779228b964974ee6b8128bdcff453990' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3378947' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.nEqOvDmq/pbuilderrc_ds4Z --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.nEqOvDmq/b1 --logfile b1/build.log htseq_1.99.2-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 5.10.0-22-amd64 #1 SMP Debian 5.10.178-3 (2023-04-22) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 04:31 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar -rwxr-xr-x 1 root root 14520 Nov 2 04:31 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/3378947/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: 2to3, debhelper-compat (= 13), dh-python, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on 2to3; however: Package 2to3 is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-debian; however: Package python3-debian is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on swig; however: Package swig is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: 2to3{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhts3{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libopenjp2-7{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxsimd-dev{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-beniget{a} python3-brotli{a} python3-chardet{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-debian{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-fonttools{a} python3-fs{a} python3-gast{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-ply{a} python3-pyparsing{a} python3-pysam{a} python3-pythran{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-sympy{a} python3-tk{a} python3-tz{a} python3-ufolib2{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} swig{a} swig4.0{a} tk8.6-blt2.5{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-apt python3-bs4 python3-html5lib python3-olefile shared-mime-info wget xdg-user-dirs zstd 0 packages upgraded, 159 newly installed, 0 to remove and 0 not upgraded. Need to get 126 MB of archives. After unpacking 671 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 2to3 all 3.11.2-1 [10.0 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [1035 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5 [399 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2 [292 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2 [759 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libtk8.6 amd64 8.6.13-2 [781 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 cython3 amd64 0.29.32-2+b1 [1302 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-2 [131 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130 [104 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 fonts-lyx all 2.3.7-1 [186 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-20 [9510 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get: 72 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.88.1-9 [381 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 libhtscodecs2 amd64 1.3.0-4 [87.5 kB] Get: 88 http://deb.debian.org/debian bookworm/main amd64 libhts3 amd64 1.16+ds-3 [430 kB] Get: 89 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get: 90 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get: 91 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 94 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 96 http://deb.debian.org/debian bookworm/main amd64 libopenblas0-pthread amd64 0.3.21+ds-4 [6709 kB] Get: 97 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get: 98 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [28.9 kB] Get: 99 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get: 100 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 libopenblas0 amd64 0.3.21+ds-4 [32.6 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 libopenblas-pthread-dev amd64 0.3.21+ds-4 [4971 kB] Get: 103 http://deb.debian.org/debian bookworm/main amd64 libopenblas-dev amd64 0.3.21+ds-4 [44.9 kB] Get: 104 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-1+b1 [189 kB] Get: 105 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 107 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6 [4738 kB] Get: 108 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get: 109 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get: 110 http://deb.debian.org/debian bookworm/main amd64 libqhull-r8.0 amd64 2020.2-5 [248 kB] Get: 111 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4.1 [10.6 kB] Get: 112 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.1 [285 kB] Get: 113 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-5 [316 kB] Get: 114 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.4-0.1 [99.2 kB] Get: 115 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.4-0.1 [109 kB] Get: 116 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get: 117 http://deb.debian.org/debian bookworm/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get: 118 http://deb.debian.org/debian bookworm/main amd64 python-matplotlib-data all 3.6.3-1 [2744 kB] Get: 119 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get: 120 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6 [615 kB] Get: 121 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get: 122 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Get: 123 http://deb.debian.org/debian bookworm/main amd64 python3-appdirs all 1.4.4-3 [13.0 kB] Get: 124 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get: 125 http://deb.debian.org/debian bookworm/main amd64 python3-gast all 0.5.2-2 [9364 B] Get: 126 http://deb.debian.org/debian bookworm/main amd64 python3-beniget all 0.4.1-3 [9920 B] Get: 127 http://deb.debian.org/debian bookworm/main amd64 python3-brotli amd64 1.0.9-2+b6 [281 kB] Get: 128 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 129 http://deb.debian.org/debian bookworm/main amd64 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get: 130 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get: 131 http://deb.debian.org/debian bookworm/main amd64 python3-contourpy amd64 1.0.7-1+b1 [176 kB] Get: 132 http://deb.debian.org/debian bookworm/main amd64 python3-cycler all 0.11.0-1 [8020 B] Get: 133 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get: 134 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-2 [78.3 kB] Get: 135 http://deb.debian.org/debian bookworm/main amd64 python3-debian all 0.1.49 [115 kB] Get: 136 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get: 137 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get: 138 http://deb.debian.org/debian bookworm/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get: 139 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.10.1-2 [15.2 MB] Get: 140 http://deb.debian.org/debian bookworm/main amd64 python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB] Get: 141 http://deb.debian.org/debian bookworm/main amd64 python3-mpmath all 1.2.1-2 [418 kB] Get: 142 http://deb.debian.org/debian bookworm/main amd64 python3-sympy all 1.11.1-1 [4358 kB] Get: 143 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.7.1-3 [30.1 kB] Get: 144 http://deb.debian.org/debian bookworm/main amd64 python3-fs all 2.4.16-2 [95.2 kB] Get: 145 http://deb.debian.org/debian bookworm/main amd64 python3-lxml amd64 4.9.2-1+b1 [1194 kB] Get: 146 http://deb.debian.org/debian bookworm/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b2 [25.0 kB] Get: 147 http://deb.debian.org/debian bookworm/main amd64 unicode-data all 15.0.0-1 [7984 kB] Get: 148 http://deb.debian.org/debian bookworm/main amd64 python3-fonttools amd64 4.38.0-1+b1 [1012 kB] Get: 149 http://deb.debian.org/debian bookworm/main amd64 python3-kiwisolver amd64 1.4.4-1+b1 [60.1 kB] Get: 150 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.4.0-1.1+b1 [472 kB] Get: 151 http://deb.debian.org/debian bookworm/main amd64 python3-tk amd64 3.11.2-2 [98.2 kB] Get: 152 http://deb.debian.org/debian bookworm/main amd64 python3-pil.imagetk amd64 9.4.0-1.1+b1 [74.4 kB] Get: 153 http://deb.debian.org/debian bookworm/main amd64 python3-pyparsing all 3.0.9-1 [138 kB] Get: 154 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get: 155 http://deb.debian.org/debian bookworm/main amd64 python3-matplotlib amd64 3.6.3-1+b1 [6921 kB] Get: 156 http://deb.debian.org/debian bookworm/main amd64 python3-pysam amd64 0.20.0+ds-3+b1 [1681 kB] Get: 157 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Get: 158 http://deb.debian.org/debian bookworm/main amd64 swig4.0 amd64 4.1.0-0.2 [1388 kB] Get: 159 http://deb.debian.org/debian bookworm/main amd64 swig all 4.1.0-0.2 [321 kB] Fetched 126 MB in 4s (30.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19912 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../3-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_amd64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20346 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../003-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../006-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... 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Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libqhull-r8.0:amd64 (2020.2-5) ... Setting up file (1:5.44-3) ... Setting up libjbig0:amd64 (2.1-6.1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Setting up unicode-data (15.0.0-1) ... Setting up libxsimd-dev:amd64 (8.1.0-7) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libexpat1-dev:amd64 (2.5.0-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-2) ... Setting up libx11-data (2:1.8.4-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libimagequant0:amd64 (2.17.0-1) ... Setting up libpng16-16:amd64 (1.6.39-2) ... Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... Setting up autopoint (0.21-12) ... 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Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up swig (4.1.0-0.2) ... Setting up libopenblas0-pthread:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libtool (2.4.7-5) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libwebpdemux2:amd64 (1.2.4-0.1) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 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Setting up libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:amd64 (7.88.1-9) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libopenblas-dev:amd64 (0.3.21+ds-4) ... Setting up libraqm0:amd64 (0.7.0-4.1) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libxft2:amd64 (2.3.6-1) ... Setting up libhts3:amd64 (1.16+ds-3) ... Setting up libpython3.11:amd64 (3.11.2-6) ... Setting up libtk8.6:amd64 (8.6.13-2) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-tz (2022.7.1-3) ... Setting up python3-six (1.16.0-4) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-packaging (23.0-1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up libpython3.11-dev:amd64 (3.11.2-6) ... Setting up python3-brotli (1.0.9-2+b6) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-kiwisolver (1.4.4-1+b1) ... Setting up cython3 (0.29.32-2+b1) ... Setting up python3-lxml:amd64 (4.9.2-1+b1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.11.2-2) ... Setting up python3-appdirs (1.4.4-3) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-2) ... Setting up dh-python (5.20230130) ... Setting up python3-sympy (1.11.1-1) ... Setting up python3-attr (22.2.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up python3-pysam (0.20.0+ds-3+b1) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-lz4 (4.0.2+dfsg-1+b2) ... Setting up python3.11-dev (3.11.2-6) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-ply (3.11-5) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-tk:amd64 (3.11.2-2) ... Setting up 2to3 (3.11.2-1) ... Setting up python3-fs (2.4.16-2) ... Setting up python3-beniget (0.4.1-3) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up libpython3-all-dev:amd64 (3.11.2-1+b1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/htseq-1.99.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../htseq_1.99.2-1_source.changes dpkg-buildpackage: info: source package htseq dpkg-buildpackage: info: source version 1.99.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/htseq-1.99.2' dh_auto_clean I: pybuild base:240: python3.11 setup.py clean /bin/sh: 1: git: not found running clean removing '/build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it # setup.py creates some symlinks in clean target # remove these links to keep source tree clean for link in 'src' 'HTSeq' 'doc' 'scripts' 'test' ; do \ if [ -L ${link} ] ; then rm ${link} ; fi \ done make[1]: Leaving directory '/build/htseq-1.99.2' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config /bin/sh: 1: git: not found running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build /bin/sh: 1: git: not found running build running build_py running preprocess cythonizing Cython version 0.29.32 /usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar. if not hasattr(numpy, method): /usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar. obj = getattr(themodule, elem) SWIGging Deprecated command line option: -py3. Ignored, this option is no longer supported. moving swigged .py module done creating /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq copying HTSeq/__init__.py -> /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq copying HTSeq/_HTSeq_internal.py -> /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq copying HTSeq/StepVector.py -> /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq copying HTSeq/StretchVector.py -> /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq copying HTSeq/_version.py -> /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq creating /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts copying HTSeq/scripts/__init__.py -> /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts copying HTSeq/scripts/qa.py -> /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts copying HTSeq/scripts/count.py -> /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts copying HTSeq/scripts/count_with_barcodes.py -> /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts copying HTSeq/scripts/utils.py -> /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts copying HTSeq/utils.py -> /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq copying HTSeq/features.py -> /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq creating /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/count_features copying HTSeq/scripts/count_features/__init__.py -> /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/count_features copying HTSeq/scripts/count_features/count_features_per_file.py -> /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/count_features copying HTSeq/scripts/count_features/reads_io_processor.py -> /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/count_features copying HTSeq/scripts/count_features/reads_stats.py -> /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/count_features running build_ext building 'HTSeq._HTSeq' extension creating build creating build/temp.linux-x86_64-cpython-311 creating build/temp.linux-x86_64-cpython-311/src x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/htseq-1.99.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/_HTSeq.c -o build/temp.linux-x86_64-cpython-311/src/_HTSeq.o -w x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/htseq-1.99.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/src/_HTSeq.o -L/usr/lib/x86_64-linux-gnu -o /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/_HTSeq.cpython-311-x86_64-linux-gnu.so building 'HTSeq._StepVector' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/htseq-1.99.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c src/StepVector_wrap.cxx -o build/temp.linux-x86_64-cpython-311/src/StepVector_wrap.o -w x86_64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/htseq-1.99.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/src/StepVector_wrap.o -L/usr/lib/x86_64-linux-gnu -o /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/_StepVector.cpython-311-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.11 copying and adjusting scripts/htseq-qa -> build/scripts-3.11 copying and adjusting scripts/htseq-count -> build/scripts-3.11 copying and adjusting scripts/htseq-count-barcodes -> build/scripts-3.11 changing mode of build/scripts-3.11/htseq-qa from 644 to 755 changing mode of build/scripts-3.11/htseq-count from 644 to 755 changing mode of build/scripts-3.11/htseq-count-barcodes from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:240: cd /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build; python3.11 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-htseq/ -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/htseq-1.99.2/debian/python3-htseq /bin/sh: 1: git: not found running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running preprocess cythonizing Cython version 0.29.32 /usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar. if not hasattr(numpy, method): /usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar. obj = getattr(themodule, elem) SWIGging Deprecated command line option: -py3. Ignored, this option is no longer supported. moving swigged .py module done copying HTSeq/StepVector.py -> /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq copying HTSeq/_version.py -> /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq running build_ext building 'HTSeq._HTSeq' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/htseq-1.99.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/_HTSeq.c -o build/temp.linux-x86_64-cpython-311/src/_HTSeq.o -w x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/htseq-1.99.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/src/_HTSeq.o -L/usr/lib/x86_64-linux-gnu -o /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/_HTSeq.cpython-311-x86_64-linux-gnu.so building 'HTSeq._StepVector' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/htseq-1.99.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c src/StepVector_wrap.cxx -o build/temp.linux-x86_64-cpython-311/src/StepVector_wrap.o -w x86_64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/htseq-1.99.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/src/StepVector_wrap.o -L/usr/lib/x86_64-linux-gnu -o /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/_StepVector.cpython-311-x86_64-linux-gnu.so running build_scripts running install_lib creating /build/htseq-1.99.2/debian/python3-htseq/usr creating /build/htseq-1.99.2/debian/python3-htseq/usr/lib creating /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11 creating /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages creating /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/_StepVector.cpython-311-x86_64-linux-gnu.so -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/_HTSeq.cpython-311-x86_64-linux-gnu.so -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/_version.py -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/StepVector.py -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq creating /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/__pycache__ copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/__pycache__/features.cpython-311.pyc -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/__pycache__ copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/__pycache__/_version.cpython-311.pyc -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/__pycache__ copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/__pycache__/utils.cpython-311.pyc -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/__pycache__ copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/__pycache__/_HTSeq_internal.cpython-311.pyc -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/__pycache__ copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/__pycache__/StretchVector.cpython-311.pyc -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/__pycache__ copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/__pycache__/StepVector.cpython-311.pyc -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/__pycache__ copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/__pycache__/__init__.cpython-311.pyc -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/__pycache__ copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/features.py -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/utils.py -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq creating /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts creating /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/__pycache__ copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/__pycache__/__init__.cpython-311.pyc -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/__pycache__ creating /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count_features creating /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count_features/__pycache__ copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/count_features/__pycache__/__init__.cpython-311.pyc -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count_features/__pycache__ copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/count_features/reads_stats.py -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count_features copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/count_features/reads_io_processor.py -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count_features copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/count_features/count_features_per_file.py -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count_features copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/count_features/__init__.py -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count_features copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/utils.py -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/count_with_barcodes.py -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/count.py -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/qa.py -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/scripts/__init__.py -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/StretchVector.py -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/_HTSeq_internal.py -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq copying /build/htseq-1.99.2/.pybuild/cpython3_3.11_htseq/build/HTSeq/__init__.py -> /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq byte-compiling /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/_version.py to _version.cpython-311.pyc byte-compiling /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/StepVector.py to StepVector.cpython-311.pyc byte-compiling /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/features.py to features.cpython-311.pyc byte-compiling /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/utils.py to utils.cpython-311.pyc byte-compiling /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count_features/reads_stats.py to reads_stats.cpython-311.pyc byte-compiling /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count_features/reads_io_processor.py to reads_io_processor.cpython-311.pyc byte-compiling /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count_features/count_features_per_file.py to count_features_per_file.cpython-311.pyc byte-compiling /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count_features/__init__.py to __init__.cpython-311.pyc byte-compiling /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/utils.py to utils.cpython-311.pyc byte-compiling /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count_with_barcodes.py to count_with_barcodes.cpython-311.pyc byte-compiling /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/count.py to count.cpython-311.pyc byte-compiling /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/qa.py to qa.cpython-311.pyc byte-compiling /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/scripts/__init__.py to __init__.cpython-311.pyc byte-compiling /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/StretchVector.py to StretchVector.cpython-311.pyc byte-compiling /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/_HTSeq_internal.py to _HTSeq_internal.cpython-311.pyc byte-compiling /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq/__init__.py to __init__.cpython-311.pyc running install_egg_info running egg_info writing HTSeq.egg-info/PKG-INFO writing dependency_links to HTSeq.egg-info/dependency_links.txt writing requirements to HTSeq.egg-info/requires.txt writing top-level names to HTSeq.egg-info/top_level.txt reading manifest file 'HTSeq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'todo.txt' adding license file 'LICENSE' writing manifest file 'HTSeq.egg-info/SOURCES.txt' Copying HTSeq.egg-info to /build/htseq-1.99.2/debian/python3-htseq/usr/lib/python3.11/dist-packages/HTSeq-1.99.2.egg-info Skipping SOURCES.txt running install_scripts creating /build/htseq-1.99.2/debian/python3-htseq/usr/bin copying build/scripts-3.11/htseq-count-barcodes -> /build/htseq-1.99.2/debian/python3-htseq/usr/bin copying build/scripts-3.11/htseq-count -> /build/htseq-1.99.2/debian/python3-htseq/usr/bin copying build/scripts-3.11/htseq-qa -> /build/htseq-1.99.2/debian/python3-htseq/usr/bin changing mode of /build/htseq-1.99.2/debian/python3-htseq/usr/bin/htseq-count-barcodes to 755 changing mode of /build/htseq-1.99.2/debian/python3-htseq/usr/bin/htseq-count to 755 changing mode of /build/htseq-1.99.2/debian/python3-htseq/usr/bin/htseq-qa to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz: debian/python3-htseq/usr/lib/python3/dist-packages/HTSeq/_StepVector.cpython-311-x86_64-linux-gnu.so: DWARF compression not beneficial - old size 509255 new size 511165 dwz: debian/python3-htseq/usr/lib/python3/dist-packages/HTSeq/_HTSeq.cpython-311-x86_64-linux-gnu.so: DWARF compression not beneficial - old size 906887 new size 907973 dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-htseq' in '../python3-htseq_1.99.2-1_amd64.deb'. dpkg-deb: building package 'python3-htseq-dbgsym' in '../python3-htseq-dbgsym_1.99.2-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../htseq_1.99.2-1_amd64.buildinfo dpkg-genchanges --build=binary -O../htseq_1.99.2-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3378947 and its subdirectories I: Current time: Mon May 1 18:19:30 -12 2023 I: pbuilder-time-stamp: 1683008370 Tue May 2 06:19:31 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Tue May 2 06:19:31 UTC 2023 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Tue May 2 06:28:11 UTC 2023 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Tue May 2 06:28:11 UTC 2023 I: htseq_1.99.2-1_amd64.changes: Format: 1.8 Date: Sun, 16 Jan 2022 18:57:47 +0100 Source: htseq Binary: python3-htseq python3-htseq-dbgsym Architecture: amd64 Version: 1.99.2-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python3-htseq - Python3 high-throughput genome sequencing read analysis utilities Changes: htseq (1.99.2-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) Checksums-Sha1: 502cf9d8ce2abf9c2c652c535348148eb8dea7a6 9270 htseq_1.99.2-1_amd64.buildinfo 41ef29443ac036a894ee80433ae706683987f13d 1324744 python3-htseq-dbgsym_1.99.2-1_amd64.deb 215603ff32eee1691ed4f14af5c050c924e0875f 266988 python3-htseq_1.99.2-1_amd64.deb Checksums-Sha256: f51ebfcfc0d0c3f016b7e56ec3093e427f2f0e9d33762eac461350573c1227f9 9270 htseq_1.99.2-1_amd64.buildinfo 709c07bf77ef3f671b7e9e8552f910bb8895d02d9d642ef1edf83cfbfd45015c 1324744 python3-htseq-dbgsym_1.99.2-1_amd64.deb 245cbabbf5b4eff9e17a5b5f99727136d9774fe627a794ddd48a9607359f7d18 266988 python3-htseq_1.99.2-1_amd64.deb Files: 89ed024da0937a311f8db78b39548c58 9270 python optional htseq_1.99.2-1_amd64.buildinfo 2325a8e0ca4cd480b2f26909fa151047 1324744 debug optional python3-htseq-dbgsym_1.99.2-1_amd64.deb 540a8eba4c146099779949faa4a16de8 266988 python optional python3-htseq_1.99.2-1_amd64.deb Tue May 2 06:28:18 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.nEqOvDmq/htseq_1.99.2-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.nEqOvDmq/htseq_1.99.2-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.nEqOvDmq/htseq_1.99.2-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.nEqOvDmq/b1/htseq_1.99.2-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.nEqOvDmq/b2/htseq_1.99.2-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 5.752s) 5.752s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.205s) 0.205s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Tue May 2 06:28:31 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Tue May 2 06:28:31 UTC 2023 I: htseq from bookworm built successfully and reproducibly on amd64. Tue May 2 06:29:01 UTC 2023 I: Submitting .buildinfo files to external archives: Tue May 2 06:29:01 UTC 2023 I: Submitting 12K b1/htseq_1.99.2-1_amd64.buildinfo.asc Tue May 2 06:29:03 UTC 2023 I: Submitting 12K b2/htseq_1.99.2-1_amd64.buildinfo.asc Tue May 2 06:29:04 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue May 2 06:29:04 UTC 2023 I: Done submitting .buildinfo files. Tue May 2 06:29:04 UTC 2023 I: Removing signed htseq_1.99.2-1_amd64.buildinfo.asc files: removed './b1/htseq_1.99.2-1_amd64.buildinfo.asc' removed './b2/htseq_1.99.2-1_amd64.buildinfo.asc'