Thu May 18 15:18:34 UTC 2023 I: starting to build genometools/bookworm/amd64 on jenkins on '2023-05-18 15:18' Thu May 18 15:18:34 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_6/14617/console.log Thu May 18 15:18:34 UTC 2023 I: Downloading source for bookworm/genometools=1.6.2+ds-3 --2023-05-18 15:18:34-- http://cdn-fastly.deb.debian.org/debian/pool/main/g/genometools/genometools_1.6.2%2bds-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2877 (2.8K) [text/prs.lines.tag] Saving to: ‘genometools_1.6.2+ds-3.dsc’ 0K .. 100% 255M=0s 2023-05-18 15:18:34 (255 MB/s) - ‘genometools_1.6.2+ds-3.dsc’ saved [2877/2877] Thu May 18 15:18:34 UTC 2023 I: genometools_1.6.2+ds-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: genometools Binary: genometools, genometools-common, libgenometools0, libgenometools0-dev, genometools-doc, python3-genometools Architecture: any all Version: 1.6.2+ds-3 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss , Andreas Tille Homepage: http://genometools.org Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/genometools Vcs-Git: https://salsa.debian.org/med-team/genometools.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, python3 Build-Depends: debhelper (>= 13), debhelper-compat (= 13), dh-python, liblua5.1-0-dev, lua-md5-dev, lua-filesystem-dev, lua-lpeg-dev, libcairo2-dev, zlib1g-dev, libbz2-dev, libexpat1-dev, libsqlite3-dev, libbam-dev, libpango1.0-dev, libtre-dev, texlive-latex-base, texlive-latex-extra, texlive-fonts-extra, texlive-latex-recommended, texlive-fonts-recommended, python3-all, python3-setuptools, asciidoc-base, libxml2-utils, xsltproc, ruby, docbook-xsl, docbook-xml, faketime, imagemagick Package-List: genometools deb science optional arch=any genometools-common deb science optional arch=all genometools-doc deb doc optional arch=all libgenometools0 deb libs optional arch=any libgenometools0-dev deb libdevel optional arch=any python3-genometools deb python optional arch=all Checksums-Sha1: fa6cb7ceb29ac70cc6f508d67f011023d7c05d28 7483632 genometools_1.6.2+ds.orig.tar.xz aa052497c884252bd53662c7307062a0ddfa57ee 70584 genometools_1.6.2+ds-3.debian.tar.xz Checksums-Sha256: a8f7f653799304d87e6c09abe89f1f4c9ecde30e1b9e228494e3410598d24fa6 7483632 genometools_1.6.2+ds.orig.tar.xz 8dde44b96aec4290dab0420b60bc47faf899817ca8526be8168a8b2f0b42de93 70584 genometools_1.6.2+ds-3.debian.tar.xz Files: 0ca745f69a48bca04547e52c7e65691d 7483632 genometools_1.6.2+ds.orig.tar.xz 00a299fd0759c0ac8cae88c123858984 70584 genometools_1.6.2+ds-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOEzgARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHsuw//ZbWKNI7z/b/dvR8ccS7RavSJaRbuc2y3 NR+UA+trDe9dzkI7oeDog4z43KPjc4xDlR4b9jUzLInidOpRNzNa/8AowbNwMeoc tCauZwXi0TM73dWNX5Cj0mfAj5MJI8ox/smFvB4lcmpgQlldCTpMBLtTXzbo6A85 UdPxFqRsVcVt7TfAhfzfJKAA1sjHap6dKO0asjDFxwCbcUvsBN5uyR3dZRbVT+Zp vHVx4/bIxEGTTAxgAXJKfLF5oHl8Y8PB7VrEVtjbOPbS2lkQvKTVPMiym4Dn75qz bPCYY+Ch2ASRNTOF6PoLRvM6fZRKSNX7z1vOto6oorvm8T4G7kcitN16lUA21ZgM ayR5Hj+u5seOZMm5C7lSbl7R6QjLj/XJ8+Tm+r/YKfIH44c5Hye9I/6N9wgw1OAp Q6aDOHstAAZ5NwaGMyWbsh/DHj6elLCPdJXnySGfPsrDPAQ/NFVJyx/txUhgIBqW YncBchWRPvJLn6WmhhTYEBbCce93QOKyGEADbx+8ZH1PzzapiCvP4P3ZHPQzITNl fm8/fzs6stFolqBljYvijeqEBrcAKtxb1Hx1NxR3ZLff9hyYU3lOAfA7kQrukeJ3 d64tJ/nLFO7JDm+/HcnUhxByuRAROJUHW3xySUDpEzcR2z4ZNWXttXW+pv+Uvpyw XQiAGtKM9vY= =QRr6 -----END PGP SIGNATURE----- Thu May 18 15:18:34 UTC 2023 I: Checking whether the package is not for us Thu May 18 15:18:34 UTC 2023 I: Starting 1st build on remote node ionos5-amd64.debian.net. Thu May 18 15:18:34 UTC 2023 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Thu May 18 15:26:49 UTC 2023 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jun 19 09:41:38 -12 2024 I: pbuilder-time-stamp: 1718833298 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [genometools_1.6.2+ds-3.dsc] I: copying [./genometools_1.6.2+ds.orig.tar.xz] I: copying [./genometools_1.6.2+ds-3.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Nov 28 03:04:32 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./genometools_1.6.2+ds-3.dsc: no acceptable signature found dpkg-source: info: extracting genometools in genometools-1.6.2+ds dpkg-source: info: unpacking genometools_1.6.2+ds.orig.tar.xz dpkg-source: info: unpacking genometools_1.6.2+ds-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying reproducible dpkg-source: info: applying adding_soname dpkg-source: info: applying libbam-fix dpkg-source: info: applying remove-gitignores dpkg-source: info: applying fix-exports dpkg-source: info: applying split-manuals dpkg-source: info: applying use-mx32 dpkg-source: info: applying gtdoc-traverse-sorted dpkg-source: info: applying ignore-m32-m64.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/78221/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='762c3d6a431f46b6856ab3e676a6bf3b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='78221' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.He57yP55/pbuilderrc_xfXp --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.He57yP55/b1 --logfile b1/build.log genometools_1.6.2+ds-3.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 2023 more -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/78221/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 13), debhelper-compat (= 13), dh-python, liblua5.1-0-dev, lua-md5-dev, lua-filesystem-dev, lua-lpeg-dev, libcairo2-dev, zlib1g-dev, libbz2-dev, libexpat1-dev, libsqlite3-dev, libbam-dev, libpango1.0-dev, libtre-dev, texlive-latex-base, texlive-latex-extra, texlive-fonts-extra, texlive-latex-recommended, texlive-fonts-recommended, python3-all, python3-setuptools, asciidoc-base, libxml2-utils, xsltproc, ruby, docbook-xsl, docbook-xml, faketime, imagemagick dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 13); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on liblua5.1-0-dev; however: Package liblua5.1-0-dev is not installed. pbuilder-satisfydepends-dummy depends on lua-md5-dev; however: Package lua-md5-dev is not installed. pbuilder-satisfydepends-dummy depends on lua-filesystem-dev; however: Package lua-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on lua-lpeg-dev; however: Package lua-lpeg-dev is not installed. pbuilder-satisfydepends-dummy depends on libcairo2-dev; however: Package libcairo2-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libexpat1-dev; however: Package libexpat1-dev is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however: Package libsqlite3-dev is not installed. pbuilder-satisfydepends-dummy depends on libbam-dev; however: Package libbam-dev is not installed. pbuilder-satisfydepends-dummy depends on libpango1.0-dev; however: Package libpango1.0-dev is not installed. pbuilder-satisfydepends-dummy depends on libtre-dev; however: Package libtre-dev is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-extra; however: Package texlive-fonts-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on asciidoc-base; however: Package asciidoc-base is not installed. pbuilder-satisfydepends-dummy depends on libxml2-utils; however: Package libxml2-utils is not installed. pbuilder-satisfydepends-dummy depends on xsltproc; however: Package xsltproc is not installed. pbuilder-satisfydepends-dummy depends on ruby; however: Package ruby is not installed. pbuilder-satisfydepends-dummy depends on docbook-xsl; however: Package docbook-xsl is not installed. pbuilder-satisfydepends-dummy depends on docbook-xml; however: Package docbook-xml is not installed. pbuilder-satisfydepends-dummy depends on faketime; however: Package faketime is not installed. pbuilder-satisfydepends-dummy depends on imagemagick; however: Package imagemagick is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: asciidoc-base{a} asciidoc-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docbook-xml{a} docbook-xsl{a} dwz{a} faketime{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} gettext{a} gettext-base{a} gir1.2-freedesktop{a} gir1.2-glib-2.0{a} gir1.2-harfbuzz-0.0{a} gir1.2-pango-1.0{a} groff-base{a} hicolor-icon-theme{a} icu-devtools{a} imagemagick{a} imagemagick-6-common{a} imagemagick-6.q16{a} intltool-debian{a} libaom3{a} libapache-pom-java{a} libarchive-zip-perl{a} libbam-dev{a} libblkid-dev{a} libbrotli-dev{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo-gobject2{a} libcairo-script-interpreter2{a} libcairo2{a} libcairo2-dev{a} libcommons-logging-java{a} libcommons-parent-java{a} libdatrie-dev{a} libdatrie1{a} libdav1d6{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfaketime{a} libffi-dev{a} libfftw3-double3{a} libfile-stripnondeterminism-perl{a} libfontbox-java{a} libfontconfig-dev{a} libfontconfig1{a} libfreetype-dev{a} libfreetype6{a} libfribidi-dev{a} libfribidi0{a} libgirepository-1.0-1{a} libglib2.0-0{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libgraphite2-3{a} libgraphite2-dev{a} libharfbuzz-dev{a} libharfbuzz-gobject0{a} libharfbuzz-icu0{a} libharfbuzz-subset0{a} libharfbuzz0b{a} libheif1{a} libice-dev{a} libice6{a} libicu-dev{a} libicu72{a} libjbig0{a} libjpeg62-turbo{a} libkpathsea6{a} liblcms2-2{a} liblerc4{a} liblqr-1-0{a} libltdl7{a} liblua5.1-0{a} liblua5.1-0-dev{a} liblzo2-2{a} libmagic-mgc{a} libmagic1{a} libmagickcore-6.q16-6{a} libmagickwand-6.q16-6{a} libmount-dev{a} libncurses-dev{a} libncurses6{a} libnuma1{a} libopenjp2-7{a} libpango-1.0-0{a} libpango1.0-dev{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpangoxft-1.0-0{a} libpaper-utils{a} libpaper1{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpixman-1-dev{a} libpkgconf3{a} libpng-dev{a} libpng16-16{a} libptexenc1{a} libpthread-stubs0-dev{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline-dev{a} libreadline8{a} libruby{a} libruby3.1{a} libselinux1-dev{a} libsepol-dev{a} libsm-dev{a} libsm6{a} libsqlite3-dev{a} libsub-override-perl{a} libsynctex2{a} libteckit0{a} libtexlua53-5{a} libtexluajit2{a} libthai-data{a} libthai-dev{a} libthai0{a} libtiff6{a} libtool{a} libtre-dev{a} libtre5{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx265-199{a} libxau-dev{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-render0-dev{a} libxcb-shm0{a} libxcb-shm0-dev{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxft-dev{a} libxft2{a} libxi6{a} libxml2{a} libxml2-utils{a} libxmu6{a} libxpm4{a} libxrender-dev{a} libxrender1{a} libxslt1.1{a} libxt6{a} libyaml-0-2{a} libzzip-0-13{a} lua-filesystem{a} lua-filesystem-dev{a} lua-lpeg{a} lua-lpeg-dev{a} lua-md5{a} lua-md5-dev{a} m4{a} man-db{a} media-types{a} openssl{a} pango1.0-tools{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} preview-latex-style{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} rake{a} readline-common{a} ruby{a} ruby-net-telnet{a} ruby-rubygems{a} ruby-sdbm{a} ruby-webrick{a} ruby-xmlrpc{a} ruby3.1{a} rubygems-integration{a} sensible-utils{a} sgml-base{a} sgml-data{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-extra{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} ucf{a} uuid-dev{a} x11-common{a} x11proto-core-dev{a} x11proto-dev{a} xdg-utils{a} xml-core{a} xorg-sgml-doctools{a} xsltproc{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cm-super curl default-jre dvisvgm fonts-adf-accanthis fonts-adf-berenis fonts-adf-gillius fonts-adf-universalis fonts-cabin fonts-cantarell fonts-clear-sans fonts-comfortaa fonts-comic-neue fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu-extra fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-go fonts-inter fonts-junicode fonts-lato fonts-linuxlibertine fonts-lobstertwo fonts-noto-color-emoji fonts-noto-core fonts-noto-mono fonts-oflb-asana-math fonts-open-sans fonts-paratype fonts-roboto-slab fonts-roboto-unhinted fonts-sil-andika fonts-sil-charis fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix ghostscript gsfonts libarchive-cpio-perl libfile-mimeinfo-perl libgpm2 libjs-jquery libltdl-dev libmagickcore-6.q16-6-extra libmail-sendmail-perl libnet-dbus-perl libpng-tools libspreadsheet-parseexcel-perl libtool-bin libx11-protocol-perl lmodern lynx netpbm shared-mime-info tex-gyre texlive-fonts-extra-links texlive-plain-generic tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs xmlto zip 0 packages upgraded, 244 newly installed, 0 to remove and 0 not upgraded. Need to get 693 MB of archives. After unpacking 2123 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libfftw3-double3 amd64 3.3.10-1 [776 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5 [399 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 libaom3 amd64 3.6.0-1 [1851 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libdav1d6 amd64 1.0.0-2 [495 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 libde265-0 amd64 1.0.11-1 [185 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 libnuma1 amd64 2.0.16-1 [21.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 libx265-199 amd64 3.5-2+b1 [1150 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 libheif1 amd64 1.15.1-1 [215 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 liblqr-1-0 amd64 0.4.2-2.1 [29.1 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libltdl7 amd64 2.4.7-5 [393 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-1+b1 [189 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.1 [285 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-5 [316 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.4-0.1 [99.2 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.4-0.1 [109 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2 [292 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2 [759 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 imagemagick-6-common all 8:6.9.11.60+dfsg-1.6 [165 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 libmagickcore-6.q16-6 amd64 8:6.9.11.60+dfsg-1.6 [1781 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libmagickwand-6.q16-6 amd64 8:6.9.11.60+dfsg-1.6 [408 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 49 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 sgml-base all 1.31 [15.4 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.8-1 [1407 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 asciidoc-common all 10.2.0-1 [109 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 docbook-xsl all 1.79.2+dfsg-2 [1237 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 libxml2-utils amd64 2.9.14+dfsg-1.2 [98.8 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 xsltproc amd64 1.1.35-1 [126 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 asciidoc-base all 10.2.0-1 [89.5 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 83 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 88 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 89 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 90 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get: 91 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130 [104 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 sgml-data all 2.0.11+nmu1 [179 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 docbook-xml all 4.5-12 [85.2 kB] Get: 94 http://deb.debian.org/debian bookworm/main amd64 libfaketime amd64 0.9.10-2.1 [47.3 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 faketime amd64 0.9.10-2.1 [17.6 kB] Get: 96 http://deb.debian.org/debian bookworm/main amd64 fontconfig amd64 2.14.1-4 [449 kB] Get: 97 http://deb.debian.org/debian bookworm/main amd64 fonts-lmodern all 2.005-1 [4540 kB] Get: 98 http://deb.debian.org/debian bookworm/main amd64 libgirepository-1.0-1 amd64 1.74.0-3 [101 kB] Get: 99 http://deb.debian.org/debian bookworm/main amd64 gir1.2-glib-2.0 amd64 1.74.0-3 [159 kB] Get: 100 http://deb.debian.org/debian bookworm/main amd64 gir1.2-freedesktop amd64 1.74.0-3 [37.2 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 gir1.2-harfbuzz-0.0 amd64 6.0.0+dfsg-3 [1579 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get: 103 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get: 104 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get: 105 http://deb.debian.org/debian bookworm/main amd64 libthai-data all 0.1.29-1 [176 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 libdatrie1 amd64 0.2.13-2+b1 [43.3 kB] Get: 107 http://deb.debian.org/debian bookworm/main amd64 libthai0 amd64 0.1.29-1 [57.5 kB] Get: 108 http://deb.debian.org/debian bookworm/main amd64 libpango-1.0-0 amd64 1.50.12+ds-1 [212 kB] Get: 109 http://deb.debian.org/debian bookworm/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB] Get: 110 http://deb.debian.org/debian bookworm/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get: 111 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get: 112 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get: 113 http://deb.debian.org/debian bookworm/main amd64 libcairo2 amd64 1.16.0-7 [575 kB] Get: 114 http://deb.debian.org/debian bookworm/main amd64 libpangoft2-1.0-0 amd64 1.50.12+ds-1 [47.4 kB] Get: 115 http://deb.debian.org/debian bookworm/main amd64 libpangocairo-1.0-0 amd64 1.50.12+ds-1 [34.2 kB] Get: 116 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB] Get: 117 http://deb.debian.org/debian bookworm/main amd64 libpangoxft-1.0-0 amd64 1.50.12+ds-1 [26.7 kB] Get: 118 http://deb.debian.org/debian bookworm/main amd64 gir1.2-pango-1.0 amd64 1.50.12+ds-1 [37.4 kB] Get: 119 http://deb.debian.org/debian bookworm/main amd64 hicolor-icon-theme all 0.17-2 [11.4 kB] Get: 120 http://deb.debian.org/debian bookworm/main amd64 icu-devtools amd64 72.1-3 [206 kB] Get: 121 http://deb.debian.org/debian bookworm/main amd64 imagemagick-6.q16 amd64 8:6.9.11.60+dfsg-1.6 [338 kB] Get: 122 http://deb.debian.org/debian bookworm/main amd64 imagemagick amd64 8:6.9.11.60+dfsg-1.6 [122 kB] Get: 123 http://deb.debian.org/debian bookworm/main amd64 libapache-pom-java all 29-2 [5276 B] Get: 124 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 125 http://deb.debian.org/debian bookworm/main amd64 libbam-dev amd64 0.1.19+dfsg-6 [118 kB] Get: 126 http://deb.debian.org/debian bookworm/main amd64 uuid-dev amd64 2.38.1-5+b1 [39.9 kB] Get: 127 http://deb.debian.org/debian bookworm/main amd64 libblkid-dev amd64 2.38.1-5+b1 [179 kB] Get: 128 http://deb.debian.org/debian bookworm/main amd64 libbrotli-dev amd64 1.0.9-2+b6 [287 kB] Get: 129 http://deb.debian.org/debian bookworm/main amd64 libbz2-dev amd64 1.0.8-5+b1 [30.9 kB] Get: 130 http://deb.debian.org/debian bookworm/main amd64 libcairo-gobject2 amd64 1.16.0-7 [112 kB] Get: 131 http://deb.debian.org/debian bookworm/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get: 132 http://deb.debian.org/debian bookworm/main amd64 libcairo-script-interpreter2 amd64 1.16.0-7 [149 kB] Get: 133 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get: 134 http://deb.debian.org/debian bookworm/main amd64 libpng-dev amd64 1.6.39-2 [359 kB] Get: 135 http://deb.debian.org/debian bookworm/main amd64 libfreetype-dev amd64 2.12.1+dfsg-5 [567 kB] Get: 136 http://deb.debian.org/debian bookworm/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB] Get: 137 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get: 138 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB] Get: 139 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB] Get: 140 http://deb.debian.org/debian bookworm/main amd64 libfontconfig-dev amd64 2.14.1-4 [409 kB] Get: 141 http://deb.debian.org/debian bookworm/main amd64 libffi-dev amd64 3.4.4-1 [59.4 kB] Get: 142 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-data all 2.74.6-2 [1207 kB] Get: 143 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-bin amd64 2.74.6-2 [110 kB] Get: 144 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-dev-bin amd64 2.74.6-2 [151 kB] Get: 145 http://deb.debian.org/debian bookworm/main amd64 libsepol-dev amd64 3.4-2 [353 kB] Get: 146 http://deb.debian.org/debian bookworm/main amd64 libpcre2-16-0 amd64 10.42-1 [245 kB] Get: 147 http://deb.debian.org/debian bookworm/main amd64 libpcre2-32-0 amd64 10.42-1 [234 kB] Get: 148 http://deb.debian.org/debian bookworm/main amd64 libpcre2-posix3 amd64 10.42-1 [55.4 kB] Get: 149 http://deb.debian.org/debian bookworm/main amd64 libpcre2-dev amd64 10.42-1 [753 kB] Get: 150 http://deb.debian.org/debian bookworm/main amd64 libselinux1-dev amd64 3.4-1+b5 [157 kB] Get: 151 http://deb.debian.org/debian bookworm/main amd64 libmount-dev amd64 2.38.1-5+b1 [22.5 kB] Get: 152 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-dev amd64 2.74.6-2 [1601 kB] Get: 153 http://deb.debian.org/debian bookworm/main amd64 libpixman-1-dev amd64 0.42.2-1 [564 kB] Get: 154 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 155 http://deb.debian.org/debian bookworm/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get: 156 http://deb.debian.org/debian bookworm/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 157 http://deb.debian.org/debian bookworm/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 158 http://deb.debian.org/debian bookworm/main amd64 x11proto-dev all 2022.1-1 [599 kB] Get: 159 http://deb.debian.org/debian bookworm/main amd64 x11proto-core-dev all 2022.1-1 [3528 B] Get: 160 http://deb.debian.org/debian bookworm/main amd64 libice-dev amd64 2:1.0.10-1 [67.1 kB] Get: 161 http://deb.debian.org/debian bookworm/main amd64 libsm-dev amd64 2:1.2.3-1 [38.0 kB] Get: 162 http://deb.debian.org/debian bookworm/main amd64 libxau-dev amd64 1:1.0.9-1 [22.9 kB] Get: 163 http://deb.debian.org/debian bookworm/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Get: 164 http://deb.debian.org/debian bookworm/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 165 http://deb.debian.org/debian bookworm/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5344 B] Get: 166 http://deb.debian.org/debian bookworm/main amd64 libxcb1-dev amd64 1.15-1 [181 kB] Get: 167 http://deb.debian.org/debian bookworm/main amd64 libx11-dev amd64 2:1.8.4-2 [836 kB] Get: 168 http://deb.debian.org/debian bookworm/main amd64 libxcb-render0-dev amd64 1.15-1 [118 kB] Get: 169 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0-dev amd64 1.15-1 [107 kB] Get: 170 http://deb.debian.org/debian bookworm/main amd64 libxext-dev amd64 2:1.3.4-1+b1 [107 kB] Get: 171 http://deb.debian.org/debian bookworm/main amd64 libxrender-dev amd64 1:0.9.10-1.1 [41.1 kB] Get: 172 http://deb.debian.org/debian bookworm/main amd64 libcairo2-dev amd64 1.16.0-7 [727 kB] Get: 173 http://deb.debian.org/debian bookworm/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get: 174 http://deb.debian.org/debian bookworm/main amd64 libcommons-logging-java all 1.2-3 [62.4 kB] Get: 175 http://deb.debian.org/debian bookworm/main amd64 libdatrie-dev amd64 0.2.13-2+b1 [18.2 kB] Get: 176 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get: 177 http://deb.debian.org/debian bookworm/main amd64 libfontbox-java all 1:1.8.16-2 [211 kB] Get: 178 http://deb.debian.org/debian bookworm/main amd64 libfribidi-dev amd64 1.0.8-2.1 [105 kB] Get: 179 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-dev amd64 1.3.14-1 [24.0 kB] Get: 180 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz-icu0 amd64 6.0.0+dfsg-3 [1557 kB] Get: 181 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz-gobject0 amd64 6.0.0+dfsg-3 [1572 kB] Get: 182 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz-subset0 amd64 6.0.0+dfsg-3 [1931 kB] Get: 183 http://deb.debian.org/debian bookworm/main amd64 libicu-dev amd64 72.1-3 [10.3 MB] Get: 184 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz-dev amd64 6.0.0+dfsg-3 [1668 kB] Get: 185 http://deb.debian.org/debian bookworm/main amd64 libkpathsea6 amd64 2022.20220321.62855-5 [152 kB] Get: 186 http://deb.debian.org/debian bookworm/main amd64 liblua5.1-0 amd64 5.1.5-9 [111 kB] Get: 187 http://deb.debian.org/debian bookworm/main amd64 libncurses6 amd64 6.4-4 [103 kB] Get: 188 http://deb.debian.org/debian bookworm/main amd64 libncurses-dev amd64 6.4-4 [349 kB] Get: 189 http://deb.debian.org/debian bookworm/main amd64 libreadline-dev amd64 8.2-1.3 [151 kB] Get: 190 http://deb.debian.org/debian bookworm/main amd64 liblua5.1-0-dev amd64 5.1.5-9 [135 kB] Get: 191 http://deb.debian.org/debian bookworm/main amd64 libthai-dev amd64 0.1.29-1 [24.0 kB] Get: 192 http://deb.debian.org/debian bookworm/main amd64 libxft-dev amd64 2.3.6-1 [80.3 kB] Get: 193 http://deb.debian.org/debian bookworm/main amd64 pango1.0-tools amd64 1.50.12+ds-1 [40.8 kB] Get: 194 http://deb.debian.org/debian bookworm/main amd64 libpango1.0-dev amd64 1.50.12+ds-1 [152 kB] Get: 195 http://deb.debian.org/debian bookworm/main amd64 libpaper1 amd64 1.1.29 [12.5 kB] Get: 196 http://deb.debian.org/debian bookworm/main amd64 libpaper-utils amd64 1.1.29 [8868 B] Get: 197 http://deb.debian.org/debian bookworm/main amd64 libpdfbox-java all 1:1.8.16-2 [5205 kB] Get: 198 http://deb.debian.org/debian bookworm/main amd64 libptexenc1 amd64 2022.20220321.62855-5 [43.5 kB] Get: 199 http://deb.debian.org/debian bookworm/main amd64 rubygems-integration all 1.18 [6704 B] Get: 200 http://deb.debian.org/debian bookworm/main amd64 ruby3.1 amd64 3.1.2-7 [663 kB] Get: 201 http://deb.debian.org/debian bookworm/main amd64 ruby-rubygems all 3.3.15-2 [293 kB] Get: 202 http://deb.debian.org/debian bookworm/main amd64 ruby amd64 1:3.1 [5868 B] Get: 203 http://deb.debian.org/debian bookworm/main amd64 rake all 13.0.6-3 [83.9 kB] Get: 204 http://deb.debian.org/debian bookworm/main amd64 ruby-net-telnet all 0.2.0-1 [13.1 kB] Get: 205 http://deb.debian.org/debian bookworm/main amd64 ruby-webrick all 1.8.1-1 [51.4 kB] Get: 206 http://deb.debian.org/debian bookworm/main amd64 ruby-xmlrpc all 0.3.2-2 [24.4 kB] Get: 207 http://deb.debian.org/debian bookworm/main amd64 ruby-sdbm amd64 1.0.0-5+b1 [15.4 kB] Get: 208 http://deb.debian.org/debian bookworm/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get: 209 http://deb.debian.org/debian bookworm/main amd64 libruby3.1 amd64 3.1.2-7 [5401 kB] Get: 210 http://deb.debian.org/debian bookworm/main amd64 libruby amd64 1:3.1 [4972 B] Get: 211 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-dev amd64 3.40.1-2 [1025 kB] Get: 212 http://deb.debian.org/debian bookworm/main amd64 libsynctex2 amd64 2022.20220321.62855-5 [59.6 kB] Get: 213 http://deb.debian.org/debian bookworm/main amd64 libteckit0 amd64 2.5.11+ds1-1+b1 [335 kB] Get: 214 http://deb.debian.org/debian bookworm/main amd64 libtexlua53-5 amd64 2022.20220321.62855-5 [111 kB] Get: 215 http://deb.debian.org/debian bookworm/main amd64 libtexluajit2 amd64 2022.20220321.62855-5 [246 kB] Get: 216 http://deb.debian.org/debian bookworm/main amd64 libtre5 amd64 0.8.0-7 [58.1 kB] Get: 217 http://deb.debian.org/debian bookworm/main amd64 libtre-dev amd64 0.8.0-7 [34.3 kB] Get: 218 http://deb.debian.org/debian bookworm/main amd64 libxt6 amd64 1:1.2.1-1.1 [186 kB] Get: 219 http://deb.debian.org/debian bookworm/main amd64 libxmu6 amd64 2:1.1.3-3 [60.1 kB] Get: 220 http://deb.debian.org/debian bookworm/main amd64 libxpm4 amd64 1:3.5.12-1.1 [48.4 kB] Get: 221 http://deb.debian.org/debian bookworm/main amd64 libxaw7 amd64 2:1.0.14-1 [201 kB] Get: 222 http://deb.debian.org/debian bookworm/main amd64 libxi6 amd64 2:1.8-1+b1 [84.2 kB] Get: 223 http://deb.debian.org/debian bookworm/main amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [58.3 kB] Get: 224 http://deb.debian.org/debian bookworm/main amd64 lua-filesystem amd64 1.8.0-3 [11.8 kB] Get: 225 http://deb.debian.org/debian bookworm/main amd64 lua-filesystem-dev amd64 1.8.0-3 [25.7 kB] Get: 226 http://deb.debian.org/debian bookworm/main amd64 lua-lpeg amd64 1.0.2-2 [37.7 kB] Get: 227 http://deb.debian.org/debian bookworm/main amd64 lua-lpeg-dev amd64 1.0.2-2 [53.3 kB] Get: 228 http://deb.debian.org/debian bookworm/main amd64 lua-md5 amd64 1.2+git+1+8d87fee-2 [12.8 kB] Get: 229 http://deb.debian.org/debian bookworm/main amd64 lua-md5-dev amd64 1.2+git+1+8d87fee-2 [19.9 kB] Get: 230 http://deb.debian.org/debian bookworm/main amd64 tex-common all 6.18 [32.5 kB] Get: 231 http://deb.debian.org/debian bookworm/main amd64 preview-latex-style all 12.2-1 [201 kB] Get: 232 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get: 233 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 234 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Get: 235 http://deb.debian.org/debian bookworm/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get: 236 http://deb.debian.org/debian bookworm/main amd64 texlive-binaries amd64 2022.20220321.62855-5 [10.5 MB] Get: 237 http://deb.debian.org/debian bookworm/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 238 http://deb.debian.org/debian bookworm/main amd64 texlive-base all 2022.20230122-3 [21.9 MB] Get: 239 http://deb.debian.org/debian bookworm/main amd64 texlive-fonts-extra all 2022.20230122-4 [509 MB] Get: 240 http://deb.debian.org/debian bookworm/main amd64 texlive-fonts-recommended all 2022.20230122-3 [4988 kB] Get: 241 http://deb.debian.org/debian bookworm/main amd64 texlive-latex-base all 2022.20230122-3 [1182 kB] Get: 242 http://deb.debian.org/debian bookworm/main amd64 texlive-latex-recommended all 2022.20230122-3 [8880 kB] Get: 243 http://deb.debian.org/debian bookworm/main amd64 texlive-pictures all 2022.20230122-3 [15.8 MB] Get: 244 http://deb.debian.org/debian bookworm/main amd64 texlive-latex-extra all 2022.20230122-4 [19.2 MB] Fetched 693 MB in 16s (43.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libfftw3-double3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../00-libfftw3-double3_3.3.10-1_amd64.deb ... Unpacking libfftw3-double3:amd64 (3.3.10-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../01-libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../02-libbrotli1_1.0.9-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b6) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../03-libpng16-16_1.6.39-2_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.39-2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../04-libfreetype6_2.12.1+dfsg-5_amd64.deb ... Unpacking libfreetype6:amd64 (2.12.1+dfsg-5) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../05-fonts-dejavu-core_2.37-6_all.deb ... Unpacking fonts-dejavu-core (2.37-6) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../06-fontconfig-config_2.14.1-4_amd64.deb ... Unpacking fontconfig-config (2.14.1-4) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../07-libfontconfig1_2.14.1-4_amd64.deb ... Unpacking libfontconfig1:amd64 (2.14.1-4) ... Selecting previously unselected package libaom3:amd64. Preparing to unpack .../08-libaom3_3.6.0-1_amd64.deb ... Unpacking libaom3:amd64 (3.6.0-1) ... Selecting previously unselected package libdav1d6:amd64. Preparing to unpack .../09-libdav1d6_1.0.0-2_amd64.deb ... Unpacking libdav1d6:amd64 (1.0.0-2) ... Selecting previously unselected package libde265-0:amd64. Preparing to unpack .../10-libde265-0_1.0.11-1_amd64.deb ... Unpacking libde265-0:amd64 (1.0.11-1) ... Selecting previously unselected package libnuma1:amd64. Preparing to unpack .../11-libnuma1_2.0.16-1_amd64.deb ... Unpacking libnuma1:amd64 (2.0.16-1) ... Selecting previously unselected package libx265-199:amd64. Preparing to unpack .../12-libx265-199_3.5-2+b1_amd64.deb ... Unpacking libx265-199:amd64 (3.5-2+b1) ... Selecting previously unselected package libheif1:amd64. Preparing to unpack .../13-libheif1_1.15.1-1_amd64.deb ... Unpacking libheif1:amd64 (1.15.1-1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../14-libjbig0_2.1-6.1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../15-libjpeg62-turbo_1%3a2.1.5-2_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.5-2) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../16-liblcms2-2_2.14-2_amd64.deb ... Unpacking liblcms2-2:amd64 (2.14-2) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../17-libglib2.0-0_2.74.6-2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.74.6-2) ... Selecting previously unselected package liblqr-1-0:amd64. Preparing to unpack .../18-liblqr-1-0_0.4.2-2.1_amd64.deb ... Unpacking liblqr-1-0:amd64 (0.4.2-2.1) ... Selecting previously unselected package libltdl7:amd64. Preparing to unpack .../19-libltdl7_2.4.7-5_amd64.deb ... Unpacking libltdl7:amd64 (2.4.7-5) ... Selecting previously unselected package libopenjp2-7:amd64. Preparing to unpack .../20-libopenjp2-7_2.5.0-1+b1_amd64.deb ... Unpacking libopenjp2-7:amd64 (2.5.0-1+b1) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../21-libdeflate0_1.14-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.14-1) ... Selecting previously unselected package liblerc4:amd64. Preparing to unpack .../22-liblerc4_4.0.0+ds-2_amd64.deb ... Unpacking liblerc4:amd64 (4.0.0+ds-2) ... Selecting previously unselected package libwebp7:amd64. Preparing to unpack .../23-libwebp7_1.2.4-0.1_amd64.deb ... Unpacking libwebp7:amd64 (1.2.4-0.1) ... Selecting previously unselected package libtiff6:amd64. Preparing to unpack .../24-libtiff6_4.5.0-5_amd64.deb ... Unpacking libtiff6:amd64 (4.5.0-5) ... Selecting previously unselected package libwebpdemux2:amd64. Preparing to unpack .../25-libwebpdemux2_1.2.4-0.1_amd64.deb ... Unpacking libwebpdemux2:amd64 (1.2.4-0.1) ... Selecting previously unselected package libwebpmux3:amd64. Preparing to unpack .../26-libwebpmux3_1.2.4-0.1_amd64.deb ... Unpacking libwebpmux3:amd64 (1.2.4-0.1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../27-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../28-libbsd0_0.11.7-2_amd64.deb ... Unpacking libbsd0:amd64 (0.11.7-2) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../29-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../30-libxcb1_1.15-1_amd64.deb ... Unpacking libxcb1:amd64 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../31-libx11-data_2%3a1.8.4-2_all.deb ... Unpacking libx11-data (2:1.8.4-2) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../32-libx11-6_2%3a1.8.4-2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.4-2) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../33-libxext6_2%3a1.3.4-1+b1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../34-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../35-libxml2_2.9.14+dfsg-1.2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package imagemagick-6-common. Preparing to unpack .../36-imagemagick-6-common_8%3a6.9.11.60+dfsg-1.6_all.deb ... Unpacking imagemagick-6-common (8:6.9.11.60+dfsg-1.6) ... Selecting previously unselected package libmagickcore-6.q16-6:amd64. Preparing to unpack .../37-libmagickcore-6.q16-6_8%3a6.9.11.60+dfsg-1.6_amd64.deb ... Unpacking libmagickcore-6.q16-6:amd64 (8:6.9.11.60+dfsg-1.6) ... Selecting previously unselected package libmagickwand-6.q16-6:amd64. Preparing to unpack .../38-libmagickwand-6.q16-6_8%3a6.9.11.60+dfsg-1.6_amd64.deb ... Unpacking libmagickwand-6.q16-6:amd64 (8:6.9.11.60+dfsg-1.6) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../39-libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../40-python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Setting up libfribidi-dev:amd64 (1.0.8-2.1) ... Setting up libwebpdemux2:amd64 (1.2.4-0.1) ... Setting up libedit2:amd64 (3.1-20221030-2) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libpng-dev:amd64 (1.6.39-2) ... Setting up libcommons-parent-java (56-1) ... Setting up libcommons-logging-java (1.2-3) ... Setting up libglib2.0-bin (2.74.6-2) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up libreadline-dev:amd64 (8.2-1.3) ... Setting up pkgconf:amd64 (1.8.1-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:amd64 (0.1.29-1) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libxdmcp-dev:amd64 (1:1.1.2-3) ... Setting up libptexenc1:amd64 (2022.20220321.62855-5) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-5) ... Setting up x11proto-core-dev (2022.1-1) ... Setting up pkg-config:amd64 (1.8.1-1) ... Setting up libbam-dev (0.1.19+dfsg-6) ... Setting up ucf (3.0043+nmu1) ... Setting up gir1.2-glib-2.0:amd64 (1.74.0-3) ... Setting up libx265-199:amd64 (3.5-2+b1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up libdatrie-dev:amd64 (0.2.13-2+b1) ... Setting up groff-base (1.22.4-10) ... Setting up xml-core (0.18+nmu1) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up libx11-6:amd64 (2:1.8.4-2) ... Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Setting up libfontconfig1:amd64 (2.14.1-4) ... Setting up libxml2-utils (2.9.14+dfsg-1.2) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libmount-dev:amd64 (2.38.1-5+b1) ... Setting up libpaper1:amd64 (1.1.29) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up gir1.2-freedesktop:amd64 (1.74.0-3) ... Setting up libharfbuzz-icu0:amd64 (6.0.0+dfsg-3) ... Setting up libxcb1-dev:amd64 (1.15-1) ... Setting up libxpm4:amd64 (1:3.5.12-1.1) ... Setting up liblua5.1-0-dev:amd64 (5.1.5-9) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up libsm-dev:amd64 (2:1.2.3-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up libpango-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libheif1:amd64 (1.15.1-1) ... Setting up xsltproc (1.1.35-1) ... Setting up libx11-dev:amd64 (2:1.8.4-2) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up rubygems-integration (1.18) ... Setting up libharfbuzz-gobject0:amd64 (6.0.0+dfsg-3) ... Setting up libpaper-utils (1.1.29) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gir1.2-harfbuzz-0.0:amd64 (6.0.0+dfsg-3) ... Setting up libcairo2:amd64 (1.16.0-7) ... Setting up libfreetype-dev:amd64 (2.12.1+dfsg-5) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libxcb-shm0-dev:amd64 (1.15-1) ... Setting up libmagickcore-6.q16-6:amd64 (8:6.9.11.60+dfsg-1.6) ... Setting up libxcb-render0-dev:amd64 (1.15-1) ... Setting up libxt6:amd64 (1:1.2.1-1.1) ... Setting up libxext-dev:amd64 (2:1.3.4-1+b1) ... Setting up libthai-dev:amd64 (0.1.29-1) ... Setting up libharfbuzz-subset0:amd64 (6.0.0+dfsg-3) ... Setting up libmagickwand-6.q16-6:amd64 (8:6.9.11.60+dfsg-1.6) ... Setting up libcairo-gobject2:amd64 (1.16.0-7) ... Setting up libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libxrender-dev:amd64 (1:0.9.10-1.1) ... Setting up libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up libcairo-script-interpreter2:amd64 (1.16.0-7) ... Setting up python3.11 (3.11.2-6) ... Setting up libxft2:amd64 (2.3.6-1) ... Setting up libxmu6:amd64 (2:1.1.3-3) ... Setting up libpangoxft-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libxi6:amd64 (2:1.8-1+b1) ... Setting up libfontconfig-dev:amd64 (2.14.1-4) ... Setting up preview-latex-style (12.2-1) ... Setting up pango1.0-tools (1.50.12+ds-1) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up libxaw7:amd64 (2:1.0.14-1) ... Setting up asciidoc-common (10.2.0-1) ... Setting up gir1.2-pango-1.0:amd64 (1.50.12+ds-1) ... Setting up imagemagick-6.q16 (8:6.9.11.60+dfsg-1.6) ... update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode Setting up texlive-binaries (2022.20220321.62855-5) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up python3-lib2to3 (3.11.2-3) ... Setting up texlive-base (2022.20230122-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up libxft-dev:amd64 (2.3.6-1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130) ... Setting up libglib2.0-dev-bin (2.74.6-2) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-all (3.11.2-1+b1) ... Setting up libglib2.0-dev:amd64 (2.74.6-2) ... Setting up texlive-latex-base (2022.20230122-3) ... Setting up texlive-fonts-extra (2022.20230122-4) ... Setting up texlive-latex-recommended (2022.20230122-3) ... Setting up texlive-pictures (2022.20230122-3) ... Setting up imagemagick (8:6.9.11.60+dfsg-1.6) ... Setting up texlive-fonts-recommended (2022.20230122-3) ... Setting up libcairo2-dev:amd64 (1.16.0-7) ... Setting up libharfbuzz-dev:amd64 (6.0.0+dfsg-3) ... Setting up texlive-latex-extra (2022.20230122-4) ... Setting up libpango1.0-dev:amd64 (1.50.12+ds-1) ... Setting up libruby3.1:amd64 (3.1.2-7) ... Setting up libruby:amd64 (1:3.1) ... Setting up ruby3.1 (3.1.2-7) ... Setting up ruby-sdbm:amd64 (1.0.0-5+b1) ... Setting up ruby (1:3.1) ... Setting up rake (13.0.6-3) ... Setting up ruby-rubygems (3.3.15-2) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for sgml-base (1.31) ... Setting up docbook-xsl (1.79.2+dfsg-2) ... Setting up sgml-data (2.0.11+nmu1) ... Setting up asciidoc-base (10.2.0-1) ... Processing triggers for sgml-base (1.31) ... Setting up docbook-xml (4.5-12) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Processing triggers for sgml-base (1.31) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/genometools-1.6.2+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../genometools_1.6.2+ds-3_source.changes dpkg-buildpackage: info: source package genometools dpkg-buildpackage: info: source version 1.6.2+ds-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/genometools-1.6.2+ds' mkdir -p obj /usr/bin/make cleanup make[2]: Entering directory '/build/genometools-1.6.2+ds' rm -rf lib find obj -name '*.o' -delete rm -f obj/amalgamation.c rm -rf testsuite/stest_testsuite testsuite/stest_stest_tests /usr/bin/make -s -C ./doc/devguide clean make[3]: Entering directory '/build/genometools-1.6.2+ds/doc/devguide' make[3]: Leaving directory '/build/genometools-1.6.2+ds/doc/devguide' /usr/bin/make -s -C ./doc/manuals clean make[3]: Entering directory '/build/genometools-1.6.2+ds/doc/manuals' make[3]: Leaving directory '/build/genometools-1.6.2+ds/doc/manuals' rm -f doc/manuals/api_reference.tex \ doc/manuals/gtscript_reference.tex find doc . -name "*.toc" -delete rm -f www/genometools.org/htdocs/images/callbacks.png \ www/genometools.org/htdocs/images/parsed.png \ www/genometools.org/htdocs/images/constructed.png \ doc/manuals/annotationsketch.pdf rm -f www/genometools.org/htdocs/examples.html rm -rf doc/manpages find testdata \( -name '*.esq' -o -name '*.sds' -o -name '*.ssp' \ -o -name '*.ois' -o -name '*.al1' \) \ -a ! \( -name 'foo.[36][24].*' \) -delete find obj -name '*.splint' -delete find obj -name '*.check' -delete find obj -name '*.sb' -delete rm -rf bin obj rm -rf gtpython/build /usr/bin/make -s -C ./doc/manuals cleanup make[3]: Entering directory '/build/genometools-1.6.2+ds/doc/manuals' make[3]: Leaving directory '/build/genometools-1.6.2+ds/doc/manuals' make[2]: Leaving directory '/build/genometools-1.6.2+ds' cd doc/manuals; /usr/bin/make cleanup make[2]: Entering directory '/build/genometools-1.6.2+ds/doc/manuals' rm -f *.aux *.log *.bbl *.blg *.dvi *.mer *.mct *.mbd comment.cut rm -f *.out *.toc rm -f U89959.fna read[12].fna rm -f reads.al1 reads.esq reads.lcp reads.llv reads.prj reads.suf rm -f tallymer-tmp.tex rm -f tagerator-tmp.tex Q1.gz pck-human.* rm -f readjoiner.pdf hop.pdf ltrharvest.pdf ltrdigest.pdf uniquesub.pdf matstat.pdf mgth.pdf packedindex.pdf repfind.pdf tallymer.pdf tagerator.pdf genomediff.pdf make[2]: Leaving directory '/build/genometools-1.6.2+ds/doc/manuals' # should be deleted inside doc/manuals/Makefile rm -f doc/manuals/annotationsketch.out \ doc/manuals/api_reference.tex \ doc/manuals/gtscript_reference.tex find doc . -name "*.toc" -delete find testdata \( -name '*.ois' -or -name '*.sds' -or -name '*.esq' -or \ -name '*.ssp' -or -name '*.des' -or -name "*.md5" \) -and \( -not \ -name '*foo.32.*' -not -name '*foo.64.*' \) -delete rm -f www/genometools.org/htdocs/images/callbacks.png \ www/genometools.org/htdocs/images/parsed.png \ www/genometools.org/htdocs/images/constructed.png \ doc/manuals/annotationsketch.pdf rm -f www/genometools.org/htdocs/examples.html \ www/genometools.org/htdocs/libgenometools.html rm -rf gtpython/build rm -rf obj make[1]: Leaving directory '/build/genometools-1.6.2+ds' dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/genometools-1.6.2+ds' cp debian/doc-imgs/*png www/genometools.org/htdocs/images faketime -f "`TZ=UTC date -d @1669647294 +'%Y-%m-%d %H:%M:%S'`" dh_auto_build -- verbose=yes useshared=yes x32=no 64bit=yes errorcheck=no all docs manuals make -j16 "INSTALL=install --strip-program=true" verbose=yes useshared=yes x32=no 64bit=yes errorcheck=no all docs manuals make[2]: Entering directory '/build/genometools-1.6.2+ds' echo '[create obj/gt_config.h]' [create obj/gt_config.h] test -d obj || mkdir -p obj test -d obj/src/core || mkdir -p obj/src/core test -d obj/src/core || mkdir -p obj/src/core test -d obj/src/core || mkdir -p obj/src/core test -d obj/src/core || mkdir -p obj/src/core (echo '#ifndef GT_CONFIG_H' ;\ echo '#define GT_CONFIG_H' ;\ echo '#define GT_CC "'`cc --version | head -n 1`\" ;\ echo '#define GT_CFLAGS "-g -O2 -ffile-prefix-map=.=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3"' ;\ echo '-Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include ' | \ sed -e 's/\([^\]\)"/\1\\"/g' -e 's/^"/\\"/g' -e 's/$/"/' \ -e 's/^/#define GT_CPPFLAGS "/'; \ echo '#define GT_VERSION "'`cat VERSION`\" ) > obj/gt_config.h test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/alphabet.c -o obj/src/core/alphabet.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/array2dim_sparse.c -o obj/src/core/array2dim_sparse.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/array.c -o obj/src/core/array.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/array2dim.c -o obj/src/core/array2dim.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/array3dim.c -o obj/src/core/array3dim.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/basename.c -o obj/src/core/basename.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core test -d obj/src/core || mkdir -p obj/src/core test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bioseq.c -o obj/src/core/bioseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/bioseq_col.c -o obj/src/core/bioseq_col.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/bioseq_iterator.c -o obj/src/core/bioseq_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cat VERSION | \ sed 's/\([0-9]*\)\.[0-9]*\.[0-9]*/#define GT_MAJOR_VERSION \1/' >> obj/gt_config.h test -d obj/src/core || mkdir -p obj/src/core test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bitbuffer.c -o obj/src/core/bitbuffer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/bitpackstringop.c -o obj/src/core/bitpackstringop.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cat VERSION | \ sed 's/[0-9]*\.\([0-9]*\)\.[0-9]*/#define GT_MINOR_VERSION \1/' >> obj/gt_config.h cc -c src/core/bitpackstringop16.c -o obj/src/core/bitpackstringop16.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cat VERSION | \ sed 's/[0-9]*\.[0-9]*\.\([0-9]*\)/#define GT_MICRO_VERSION \1/' >> obj/gt_config.h cc -c src/core/bitpackstringop32.c -o obj/src/core/bitpackstringop32.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 echo '#endif' >> obj/gt_config.h test -d obj/src/core || mkdir -p obj/src/core test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bitpackstringop64.c -o obj/src/core/bitpackstringop64.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/bitpackstringop8.c -o obj/src/core/bitpackstringop8.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bittab.c -o obj/src/core/bittab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/array2dim.c -o obj/src/core/array2dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/array2dim.o cc -c src/core/array2dim_sparse.c -o obj/src/core/array2dim_sparse.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/array2dim_sparse.o cc -c src/core/array3dim.c -o obj/src/core/array3dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/array3dim.o cc -c src/core/bioseq_iterator.c -o obj/src/core/bioseq_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bioseq_iterator.o cc -c src/core/basename.c -o obj/src/core/basename.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/basename.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bool_matrix.c -o obj/src/core/bool_matrix.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bsearch.c -o obj/src/core/bsearch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/byte_popcount.c -o obj/src/core/byte_popcount.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/byte_select.c -o obj/src/core/byte_select.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/checkbitpackarray.c -o obj/src/core/checkbitpackarray.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/byte_popcount.c -o obj/src/core/byte_popcount.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/byte_popcount.o cc -c src/core/bool_matrix.c -o obj/src/core/bool_matrix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bool_matrix.o cc -c src/core/byte_select.c -o obj/src/core/byte_select.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/byte_select.o cc -c src/core/bitbuffer.c -o obj/src/core/bitbuffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitbuffer.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/checkbitpackstring-int.c -o obj/src/core/checkbitpackstring-int.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/checkbitpackstring.c -o obj/src/core/checkbitpackstring.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/checkbitpackstring16.c -o obj/src/core/checkbitpackstring16.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/checkbitpackstring32.c -o obj/src/core/checkbitpackstring32.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/bioseq_col.c -o obj/src/core/bioseq_col.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bioseq_col.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/checkbitpackstring64.c -o obj/src/core/checkbitpackstring64.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/checkbitpackarray.c -o obj/src/core/checkbitpackarray.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackarray.o cc -c src/core/checkbitpackstring.c -o obj/src/core/checkbitpackstring.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring.o cc -c src/core/bitpackstringop.c -o obj/src/core/bitpackstringop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop.o cc -c src/core/bsearch.c -o obj/src/core/bsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bsearch.o cc -c src/core/bioseq.c -o obj/src/core/bioseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bioseq.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/checkbitpackstring8.c -o obj/src/core/checkbitpackstring8.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/array.c -o obj/src/core/array.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/array.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/class_alloc.c -o obj/src/core/class_alloc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/class_alloc_lock.c -o obj/src/core/class_alloc_lock.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/codon_iterator.c -o obj/src/core/codon_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/codon_iterator_encseq.c -o obj/src/core/codon_iterator_encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/class_alloc.c -o obj/src/core/class_alloc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/class_alloc.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/codon_iterator_simple.c -o obj/src/core/codon_iterator_simple.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/class_alloc_lock.c -o obj/src/core/class_alloc_lock.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/class_alloc_lock.o cc -c src/core/bitpackstringop64.c -o obj/src/core/bitpackstringop64.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop64.o cc -c src/core/bitpackstringop8.c -o obj/src/core/bitpackstringop8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop8.o cc -c src/core/bittab.c -o obj/src/core/bittab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bittab.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bitpackstringop16.c -o obj/src/core/bitpackstringop16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop16.o cc -c src/core/colorspace.c -o obj/src/core/colorspace.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/combinatorics.c -o obj/src/core/combinatorics.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/codon_iterator.c -o obj/src/core/codon_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/codon_iterator.o cc -c src/core/bitpackstringop32.c -o obj/src/core/bitpackstringop32.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop32.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/compact_ulong_store.c -o obj/src/core/compact_ulong_store.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/alphabet.c -o obj/src/core/alphabet.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/alphabet.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/compat.c -o obj/src/core/compat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/complement.c -o obj/src/core/complement.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/countingsort.c -o obj/src/core/countingsort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/cstr.c -o obj/src/core/cstr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/cstr_array.c -o obj/src/core/cstr_array.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/cstr_table.c -o obj/src/core/cstr_table.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/codon_iterator_simple.c -o obj/src/core/codon_iterator_simple.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/codon_iterator_simple.o cc -c src/core/compat.c -o obj/src/core/compat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/compat.o cc -c src/core/colorspace.c -o obj/src/core/colorspace.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/colorspace.o cc -c src/core/complement.c -o obj/src/core/complement.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/complement.o cc -c src/core/codon_iterator_encseq.c -o obj/src/core/codon_iterator_encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/codon_iterator_encseq.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/csvline_reader.c -o obj/src/core/csvline_reader.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/countingsort.c -o obj/src/core/countingsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/countingsort.o cc -c src/core/desc_buffer.c -o obj/src/core/desc_buffer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/disc_distri.c -o obj/src/core/disc_distri.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/compact_ulong_store.c -o obj/src/core/compact_ulong_store.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/compact_ulong_store.o cc -c src/core/combinatorics.c -o obj/src/core/combinatorics.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/combinatorics.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/dlist.c -o obj/src/core/dlist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/cstr.c -o obj/src/core/cstr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/cstr.o cc -c src/core/dual-pivot-qsort.c -o obj/src/core/dual-pivot-qsort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/cstr_table.c -o obj/src/core/cstr_table.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/cstr_table.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/dyn_bittab.c -o obj/src/core/dyn_bittab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/cstr_array.c -o obj/src/core/cstr_array.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/cstr_array.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/dynalloc.c -o obj/src/core/dynalloc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/eansi.c -o obj/src/core/eansi.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/ebzlib.c -o obj/src/core/ebzlib.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/encseq.c -o obj/src/core/encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/encseq_access_type.c -o obj/src/core/encseq_access_type.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/ebzlib.c -o obj/src/core/ebzlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/ebzlib.o cc -c src/core/dynalloc.c -o obj/src/core/dynalloc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dynalloc.o cc -c src/core/desc_buffer.c -o obj/src/core/desc_buffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/desc_buffer.o cc -c src/core/disc_distri.c -o obj/src/core/disc_distri.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/disc_distri.o cc -c src/core/eansi.c -o obj/src/core/eansi.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/eansi.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/encseq_col.c -o obj/src/core/encseq_col.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/checkbitpackstring32.c -o obj/src/core/checkbitpackstring32.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring32.o cc -c src/core/checkbitpackstring-int.c -o obj/src/core/checkbitpackstring-int.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring-int.o cc -c src/core/csvline_reader.c -o obj/src/core/csvline_reader.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/csvline_reader.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/dual-pivot-qsort.c -o obj/src/core/dual-pivot-qsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dual-pivot-qsort.o cc -c src/core/encseq_metadata.c -o obj/src/core/encseq_metadata.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/dyn_bittab.c -o obj/src/core/dyn_bittab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dyn_bittab.o cc -c src/core/encseq_options.c -o obj/src/core/encseq_options.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/encseq_ptr.c -o obj/src/core/encseq_ptr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/checkbitpackstring16.c -o obj/src/core/checkbitpackstring16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring16.o cc -c src/core/endianess.c -o obj/src/core/endianess.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/error.c -o obj/src/core/error.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/example.c -o obj/src/core/example.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/checkbitpackstring64.c -o obj/src/core/checkbitpackstring64.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring64.o cc -c src/core/example_a.c -o obj/src/core/example_a.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/example_b.c -o obj/src/core/example_b.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/endianess.c -o obj/src/core/endianess.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/endianess.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/ezlib.c -o obj/src/core/ezlib.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fa.c -o obj/src/core/fa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fasta.c -o obj/src/core/fasta.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fasta_reader.c -o obj/src/core/fasta_reader.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/encseq_access_type.c -o obj/src/core/encseq_access_type.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_access_type.o cc -c src/core/example.c -o obj/src/core/example.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/example.o cc -c src/core/example_b.c -o obj/src/core/example_b.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/example_b.o cc -c src/core/encseq_ptr.c -o obj/src/core/encseq_ptr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_ptr.o cc -c src/core/example_a.c -o obj/src/core/example_a.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/example_a.o cc -c src/core/dlist.c -o obj/src/core/dlist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dlist.o cc -c src/core/ezlib.c -o obj/src/core/ezlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/ezlib.o cc -c src/core/checkbitpackstring8.c -o obj/src/core/checkbitpackstring8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring8.o test -d obj/src/core || mkdir -p obj/src/core test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fasta_reader_fsm.c -o obj/src/core/fasta_reader_fsm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/fasta_reader_rec.c -o obj/src/core/fasta_reader_rec.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/error.c -o obj/src/core/error.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/error.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fasta_reader.c -o obj/src/core/fasta_reader.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta_reader.o cc -c src/core/fasta_reader_seqit.c -o obj/src/core/fasta_reader_seqit.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fastq.c -o obj/src/core/fastq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/file.c -o obj/src/core/file.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fileutils.c -o obj/src/core/fileutils.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fasta.c -o obj/src/core/fasta.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta.o cc -c src/core/gc_content.c -o obj/src/core/gc_content.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/grep.c -o obj/src/core/grep.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/gtdatapath.c -o obj/src/core/gtdatapath.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/hashmap.c -o obj/src/core/hashmap.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fastq.c -o obj/src/core/fastq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fastq.o cc -c src/core/hashtable.c -o obj/src/core/hashtable.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/fasta_reader_seqit.c -o obj/src/core/fasta_reader_seqit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta_reader_seqit.o cc -c src/core/fasta_reader_fsm.c -o obj/src/core/fasta_reader_fsm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta_reader_fsm.o cc -c src/core/fasta_reader_rec.c -o obj/src/core/fasta_reader_rec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta_reader_rec.o cc -c src/core/gc_content.c -o obj/src/core/gc_content.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/gc_content.o cc -c src/core/gtdatapath.c -o obj/src/core/gtdatapath.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/gtdatapath.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/encseq_metadata.c -o obj/src/core/encseq_metadata.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_metadata.o cc -c src/core/init.c -o obj/src/core/init.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/interval_tree.c -o obj/src/core/interval_tree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/io.c -o obj/src/core/io.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/log.c -o obj/src/core/log.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/encseq_col.c -o obj/src/core/encseq_col.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_col.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/logger.c -o obj/src/core/logger.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/ma.c -o obj/src/core/ma.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/mapspec.c -o obj/src/core/mapspec.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/log.c -o obj/src/core/log.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/log.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/encseq_options.c -o obj/src/core/encseq_options.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_options.o cc -c src/core/hashmap.c -o obj/src/core/hashmap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/hashmap.o cc -c src/core/mathsupport.c -o obj/src/core/mathsupport.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/fileutils.c -o obj/src/core/fileutils.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fileutils.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/grep.c -o obj/src/core/grep.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/grep.o cc -c src/core/init.c -o obj/src/core/init.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/init.o cc -c src/core/md5_encoder.c -o obj/src/core/md5_encoder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/md5_fingerprint.c -o obj/src/core/md5_fingerprint.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/file.c -o obj/src/core/file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/file.o cc -c src/core/md5_seqid.c -o obj/src/core/md5_seqid.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/io.c -o obj/src/core/io.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/io.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/md5_tab.c -o obj/src/core/md5_tab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/msort.c -o obj/src/core/msort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/logger.c -o obj/src/core/logger.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/logger.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/multithread.c -o obj/src/core/multithread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/option.c -o obj/src/core/option.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/orf.c -o obj/src/core/orf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/md5_fingerprint.c -o obj/src/core/md5_fingerprint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_fingerprint.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/md5_seqid.c -o obj/src/core/md5_seqid.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_seqid.o cc -c src/core/output_file.c -o obj/src/core/output_file.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/multithread.c -o obj/src/core/multithread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/multithread.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/parseutils.c -o obj/src/core/parseutils.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/password_entry.c -o obj/src/core/password_entry.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/phase.c -o obj/src/core/phase.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/orf.c -o obj/src/core/orf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/orf.o cc -c src/core/fa.c -o obj/src/core/fa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fa.o cc -c src/core/md5_tab.c -o obj/src/core/md5_tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_tab.o cc -c src/core/ma.c -o obj/src/core/ma.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/ma.o cc -c src/core/output_file.c -o obj/src/core/output_file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/output_file.o cc -c src/core/phase.c -o obj/src/core/phase.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/phase.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/process.c -o obj/src/core/process.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/mathsupport.c -o obj/src/core/mathsupport.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/mathsupport.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/password_entry.c -o obj/src/core/password_entry.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/password_entry.o cc -c src/core/progressbar.c -o obj/src/core/progressbar.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/qsort-ulong.c -o obj/src/core/qsort-ulong.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/md5_encoder.c -o obj/src/core/md5_encoder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_encoder.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/qsort_r.c -o obj/src/core/qsort_r.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/process.c -o obj/src/core/process.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/process.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/quality.c -o obj/src/core/quality.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/queue.c -o obj/src/core/queue.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/radix_sort.c -o obj/src/core/radix_sort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/hashtable.c -o obj/src/core/hashtable.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/hashtable.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/range.c -o obj/src/core/range.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/readmode.c -o obj/src/core/readmode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/safearith.c -o obj/src/core/safearith.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/mapspec.c -o obj/src/core/mapspec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/mapspec.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/score_function.c -o obj/src/core/score_function.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/progressbar.c -o obj/src/core/progressbar.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/progressbar.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/score_matrix.c -o obj/src/core/score_matrix.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/parseutils.c -o obj/src/core/parseutils.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/parseutils.o cc -c src/core/readmode.c -o obj/src/core/readmode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/readmode.o cc -c src/core/quality.c -o obj/src/core/quality.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/quality.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/seq.c -o obj/src/core/seq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/score_function.c -o obj/src/core/score_function.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/score_function.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/safearith.c -o obj/src/core/safearith.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/safearith.o cc -c src/core/seq_col.c -o obj/src/core/seq_col.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/seq_info_cache.c -o obj/src/core/seq_info_cache.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/seq_iterator.c -o obj/src/core/seq_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/seq_iterator_fastq.c -o obj/src/core/seq_iterator_fastq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/qsort-ulong.c -o obj/src/core/qsort-ulong.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/qsort-ulong.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/seq_iterator_sequence_buffer.c -o obj/src/core/seq_iterator_sequence_buffer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/seq.c -o obj/src/core/seq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq.o cc -c src/core/interval_tree.c -o obj/src/core/interval_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/interval_tree.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sequence_buffer.c -o obj/src/core/sequence_buffer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/seq_info_cache.c -o obj/src/core/seq_info_cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_info_cache.o cc -c src/core/sequence_buffer_dust.c -o obj/src/core/sequence_buffer_dust.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/seq_iterator.c -o obj/src/core/seq_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_iterator.o cc -c src/core/sequence_buffer_embl.c -o obj/src/core/sequence_buffer_embl.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sequence_buffer_fasta.c -o obj/src/core/sequence_buffer_fasta.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/score_matrix.c -o obj/src/core/score_matrix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/score_matrix.o cc -c src/core/seq_col.c -o obj/src/core/seq_col.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_col.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sequence_buffer_fastq.c -o obj/src/core/sequence_buffer_fastq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/range.c -o obj/src/core/range.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/range.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/seq_iterator_sequence_buffer.c -o obj/src/core/seq_iterator_sequence_buffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_iterator_sequence_buffer.o cc -c src/core/sequence_buffer_gb.c -o obj/src/core/sequence_buffer_gb.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sequence_buffer_plain.c -o obj/src/core/sequence_buffer_plain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/showtime.c -o obj/src/core/showtime.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/queue.c -o obj/src/core/queue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/queue.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sig.c -o obj/src/core/sig.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/sequence_buffer.c -o obj/src/core/sequence_buffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer.o cc -c src/core/sequence_buffer_fasta.c -o obj/src/core/sequence_buffer_fasta.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_fasta.o cc -c src/core/showtime.c -o obj/src/core/showtime.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/showtime.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/spacepeak.c -o obj/src/core/spacepeak.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sig.c -o obj/src/core/sig.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sig.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/splitter.c -o obj/src/core/splitter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/str.c -o obj/src/core/str.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/sequence_buffer_plain.c -o obj/src/core/sequence_buffer_plain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_plain.o cc -c src/core/msort.c -o obj/src/core/msort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/msort.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/str_array.c -o obj/src/core/str_array.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/qsort_r.c -o obj/src/core/qsort_r.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/qsort_r.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sequence_buffer_fastq.c -o obj/src/core/sequence_buffer_fastq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_fastq.o cc -c src/core/str_cache.c -o obj/src/core/str_cache.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/strand.c -o obj/src/core/strand.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/strcmp.c -o obj/src/core/strcmp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/seq_iterator_fastq.c -o obj/src/core/seq_iterator_fastq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_iterator_fastq.o cc -c src/core/sequence_buffer_embl.c -o obj/src/core/sequence_buffer_embl.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_embl.o cc -c src/core/spacepeak.c -o obj/src/core/spacepeak.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/spacepeak.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/string_distri.c -o obj/src/core/string_distri.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/sequence_buffer_dust.c -o obj/src/core/sequence_buffer_dust.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_dust.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/symbol.c -o obj/src/core/symbol.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/thread.c -o obj/src/core/thread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/strcmp.c -o obj/src/core/strcmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/strcmp.o cc -c src/core/timer.c -o obj/src/core/timer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/strand.c -o obj/src/core/strand.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/strand.o cc -c src/core/str_cache.c -o obj/src/core/str_cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/str_cache.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/tokenizer.c -o obj/src/core/tokenizer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/tool.c -o obj/src/core/tool.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/tool_iterator.c -o obj/src/core/tool_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/toolbox.c -o obj/src/core/toolbox.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/tooldriver.c -o obj/src/core/tooldriver.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/str_array.c -o obj/src/core/str_array.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/str_array.o cc -c src/core/symbol.c -o obj/src/core/symbol.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/symbol.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/trans_table.c -o obj/src/core/trans_table.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/string_distri.c -o obj/src/core/string_distri.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/string_distri.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/translator.c -o obj/src/core/translator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/tool_iterator.c -o obj/src/core/tool_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/tool_iterator.o cc -c src/core/tool.c -o obj/src/core/tool.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/tool.o cc -c src/core/thread.c -o obj/src/core/thread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/thread.o cc -c src/core/tooldriver.c -o obj/src/core/tooldriver.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/tooldriver.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/unit_testing.c -o obj/src/core/unit_testing.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/version.c -o obj/src/core/version.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/option.c -o obj/src/core/option.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/option.o cc -c src/core/splitter.c -o obj/src/core/splitter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/splitter.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/versionfunc.c -o obj/src/core/versionfunc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/tokenizer.c -o obj/src/core/tokenizer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/tokenizer.o cc -c src/core/warning.c -o obj/src/core/warning.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/xansi.c -o obj/src/core/xansi.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/toolbox.c -o obj/src/core/toolbox.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/toolbox.o cc -c src/core/version.c -o obj/src/core/version.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/version.o cc -c src/core/unit_testing.c -o obj/src/core/unit_testing.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/unit_testing.o cc -c src/core/versionfunc.c -o obj/src/core/versionfunc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/versionfunc.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/timer.c -o obj/src/core/timer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/timer.o cc -c src/core/xbsd.c -o obj/src/core/xbsd.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/xbzlib.c -o obj/src/core/xbzlib.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/warning.c -o obj/src/core/warning.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/warning.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/xposix.c -o obj/src/core/xposix.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/xzlib.c -o obj/src/core/xzlib.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/core/yarandom.c -o obj/src/core/yarandom.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/add_ids_stream.c -o obj/src/extended/add_ids_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/add_ids_visitor.c -o obj/src/extended/add_ids_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/xbsd.c -o obj/src/core/xbsd.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xbsd.o cc -c src/core/str.c -o obj/src/core/str.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/str.o cc -c src/core/xansi.c -o obj/src/core/xansi.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xansi.o cc -c src/core/xbzlib.c -o obj/src/core/xbzlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xbzlib.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/add_introns_stream.c -o obj/src/extended/add_introns_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/yarandom.c -o obj/src/core/yarandom.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/yarandom.o cc -c src/core/sequence_buffer_gb.c -o obj/src/core/sequence_buffer_gb.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_gb.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/affinealign.c -o obj/src/extended/affinealign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/trans_table.c -o obj/src/core/trans_table.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/trans_table.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/core/translator.c -o obj/src/core/translator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/translator.o cc -c src/core/xzlib.c -o obj/src/core/xzlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xzlib.o cc -c src/extended/add_ids_stream.c -o obj/src/extended/add_ids_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/add_ids_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/aligned_segment.c -o obj/src/extended/aligned_segment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/aligned_segments_pile.c -o obj/src/extended/aligned_segments_pile.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/xposix.c -o obj/src/core/xposix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xposix.o cc -c src/extended/add_introns_stream.c -o obj/src/extended/add_introns_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/add_introns_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/alignment.c -o obj/src/extended/alignment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/anno_db_gfflike.c -o obj/src/extended/anno_db_gfflike.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/anno_db_schema.c -o obj/src/extended/anno_db_schema.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/array_in_stream.c -o obj/src/extended/array_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/array_out_stream.c -o obj/src/extended/array_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/assembly_stats_calculator.c -o obj/src/extended/assembly_stats_calculator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/add_ids_visitor.c -o obj/src/extended/add_ids_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/add_ids_visitor.o cc -c src/extended/bed_in_stream.c -o obj/src/extended/bed_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/bed_parser.c -o obj/src/extended/bed_parser.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/bitinstream.c -o obj/src/extended/bitinstream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/bitoutstream.c -o obj/src/extended/bitoutstream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/array_in_stream.c -o obj/src/extended/array_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/array_in_stream.o cc -c src/extended/blast_process_call.c -o obj/src/extended/blast_process_call.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/anno_db_schema.c -o obj/src/extended/anno_db_schema.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/anno_db_schema.o cc -c src/extended/aligned_segments_pile.c -o obj/src/extended/aligned_segments_pile.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/aligned_segments_pile.o cc -c src/extended/array_out_stream.c -o obj/src/extended/array_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/array_out_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/core/radix_sort.c -o obj/src/core/radix_sort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/radix_sort.o cc -c src/extended/buffer_stream.c -o obj/src/extended/buffer_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/bed_in_stream.c -o obj/src/extended/bed_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bed_in_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/cds_check_stream.c -o obj/src/extended/cds_check_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/cds_check_visitor.c -o obj/src/extended/cds_check_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/cds_stream.c -o obj/src/extended/cds_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/cds_visitor.c -o obj/src/extended/cds_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/bitinstream.c -o obj/src/extended/bitinstream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bitinstream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/chain.c -o obj/src/extended/chain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/bitoutstream.c -o obj/src/extended/bitoutstream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bitoutstream.o cc -c src/extended/assembly_stats_calculator.c -o obj/src/extended/assembly_stats_calculator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/assembly_stats_calculator.o cc -c src/extended/aligned_segment.c -o obj/src/extended/aligned_segment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/aligned_segment.o cc -c src/extended/buffer_stream.c -o obj/src/extended/buffer_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/buffer_stream.o cc -c src/extended/cds_stream.c -o obj/src/extended/cds_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cds_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/check_boundaries_visitor.c -o obj/src/extended/check_boundaries_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/cds_check_stream.c -o obj/src/extended/cds_check_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cds_check_stream.o cc -c src/extended/chseqids_stream.c -o obj/src/extended/chseqids_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/clustered_set.c -o obj/src/extended/clustered_set.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/chain.c -o obj/src/extended/chain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/chain.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/blast_process_call.c -o obj/src/extended/blast_process_call.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/blast_process_call.o cc -c src/extended/clustered_set_uf.c -o obj/src/extended/clustered_set_uf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/coin_hmm.c -o obj/src/extended/coin_hmm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/cds_check_visitor.c -o obj/src/extended/cds_check_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cds_check_visitor.o cc -c src/extended/affinealign.c -o obj/src/extended/affinealign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/affinealign.o test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/check_boundaries_visitor.c -o obj/src/extended/check_boundaries_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/check_boundaries_visitor.o cc -c src/extended/collect_ids_visitor.c -o obj/src/extended/collect_ids_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/comment_node.c -o obj/src/extended/comment_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/compressed_bitsequence.c -o obj/src/extended/compressed_bitsequence.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/clustered_set.c -o obj/src/extended/clustered_set.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/clustered_set.o cc -c src/extended/condenseq.c -o obj/src/extended/condenseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/chseqids_stream.c -o obj/src/extended/chseqids_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/chseqids_stream.o cc -c src/extended/coin_hmm.c -o obj/src/extended/coin_hmm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/coin_hmm.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/condenseq_creator.c -o obj/src/extended/condenseq_creator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/condenseq_search_arguments.c -o obj/src/extended/condenseq_search_arguments.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/comment_node.c -o obj/src/extended/comment_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/comment_node.o cc -c src/extended/cds_visitor.c -o obj/src/extended/cds_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cds_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/consensus_sa.c -o obj/src/extended/consensus_sa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/collect_ids_visitor.c -o obj/src/extended/collect_ids_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/collect_ids_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/csa_gene.c -o obj/src/extended/csa_gene.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/csa_splice_form.c -o obj/src/extended/csa_splice_form.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/csa_stream.c -o obj/src/extended/csa_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/csa_variable_strands.c -o obj/src/extended/csa_variable_strands.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/alignment.c -o obj/src/extended/alignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/alignment.o cc -c src/extended/clustered_set_uf.c -o obj/src/extended/clustered_set_uf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/clustered_set_uf.o cc -c src/extended/condenseq_search_arguments.c -o obj/src/extended/condenseq_search_arguments.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/condenseq_search_arguments.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/csa_visitor.c -o obj/src/extended/csa_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/bed_parser.c -o obj/src/extended/bed_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bed_parser.o cc -c src/extended/cstr_iterator.c -o obj/src/extended/cstr_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/diagonalbandalign.c -o obj/src/extended/diagonalbandalign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/csa_splice_form.c -o obj/src/extended/csa_splice_form.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_splice_form.o cc -c src/extended/csa_stream.c -o obj/src/extended/csa_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_stream.o cc -c src/extended/diagonalbandalign_affinegapcost.c -o obj/src/extended/diagonalbandalign_affinegapcost.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/dice_hmm.c -o obj/src/extended/dice_hmm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/csa_gene.c -o obj/src/extended/csa_gene.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_gene.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/dot_out_stream.c -o obj/src/extended/dot_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/dot_visitor.c -o obj/src/extended/dot_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/cstr_iterator.c -o obj/src/extended/cstr_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cstr_iterator.o cc -c src/extended/csa_variable_strands.c -o obj/src/extended/csa_variable_strands.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_variable_strands.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/dup_feature_stream.c -o obj/src/extended/dup_feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/dup_feature_visitor.c -o obj/src/extended/dup_feature_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/editscript.c -o obj/src/extended/editscript.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/dice_hmm.c -o obj/src/extended/dice_hmm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dice_hmm.o cc -c src/extended/dot_out_stream.c -o obj/src/extended/dot_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dot_out_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/elias_gamma.c -o obj/src/extended/elias_gamma.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/dup_feature_stream.c -o obj/src/extended/dup_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dup_feature_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/encdesc.c -o obj/src/extended/encdesc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/dot_visitor.c -o obj/src/extended/dot_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dot_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/encdesc_header_io.c -o obj/src/extended/encdesc_header_io.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/dup_feature_visitor.c -o obj/src/extended/dup_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dup_feature_visitor.o cc -c src/extended/eof_node.c -o obj/src/extended/eof_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/consensus_sa.c -o obj/src/extended/consensus_sa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/consensus_sa.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/evaluator.c -o obj/src/extended/evaluator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/extract_feature_sequence.c -o obj/src/extended/extract_feature_sequence.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/extract_feature_stream.c -o obj/src/extended/extract_feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/elias_gamma.c -o obj/src/extended/elias_gamma.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/elias_gamma.o cc -c src/extended/anno_db_gfflike.c -o obj/src/extended/anno_db_gfflike.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/anno_db_gfflike.o cc -c src/extended/csa_visitor.c -o obj/src/extended/csa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_visitor.o cc -c src/extended/eof_node.c -o obj/src/extended/eof_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/eof_node.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/extract_feature_visitor.c -o obj/src/extended/extract_feature_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/fasta_header_iterator.c -o obj/src/extended/fasta_header_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_in_stream.c -o obj/src/extended/feature_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/extract_feature_stream.c -o obj/src/extended/extract_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/extract_feature_stream.o cc -c src/extended/feature_index.c -o obj/src/extended/feature_index.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_index_memory.c -o obj/src/extended/feature_index_memory.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/evaluator.c -o obj/src/extended/evaluator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/evaluator.o cc -c src/extended/fasta_header_iterator.c -o obj/src/extended/fasta_header_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/fasta_header_iterator.o cc -c src/extended/extract_feature_sequence.c -o obj/src/extended/extract_feature_sequence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/extract_feature_sequence.o cc -c src/extended/feature_in_stream.c -o obj/src/extended/feature_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_in_stream.o cc -c src/extended/extract_feature_visitor.c -o obj/src/extended/extract_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/extract_feature_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_info.c -o obj/src/extended/feature_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_node.c -o obj/src/extended/feature_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_node_iterator.c -o obj/src/extended/feature_node_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_node_observer.c -o obj/src/extended/feature_node_observer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_out_stream.c -o obj/src/extended/feature_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/feature_out_stream.c -o obj/src/extended/feature_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_out_stream.o cc -c src/extended/feature_node_observer.c -o obj/src/extended/feature_node_observer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_node_observer.o cc -c src/extended/condenseq.c -o obj/src/extended/condenseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/condenseq.o cc -c src/extended/feature_info.c -o obj/src/extended/feature_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_info.o cc -c src/extended/feature_index_memory.c -o obj/src/extended/feature_index_memory.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_index_memory.o cc -c src/extended/feature_node_iterator.c -o obj/src/extended/feature_node_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_node_iterator.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_stream.c -o obj/src/extended/feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_visitor.c -o obj/src/extended/feature_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gap_str.c -o obj/src/extended/gap_str.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/genome_node.c -o obj/src/extended/genome_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_escaping.c -o obj/src/extended/gff3_escaping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/diagonalbandalign.c -o obj/src/extended/diagonalbandalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/diagonalbandalign.o cc -c src/extended/feature_stream.c -o obj/src/extended/feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_stream.o cc -c src/extended/gff3_in_stream.c -o obj/src/extended/gff3_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/feature_index.c -o obj/src/extended/feature_index.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_index.o cc -c src/extended/encdesc_header_io.c -o obj/src/extended/encdesc_header_io.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/encdesc_header_io.o cc -c src/extended/feature_visitor.c -o obj/src/extended/feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_in_stream_plain.c -o obj/src/extended/gff3_in_stream_plain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_linesorted_out_stream.c -o obj/src/extended/gff3_linesorted_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_numsorted_out_stream.c -o obj/src/extended/gff3_numsorted_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/compressed_bitsequence.c -o obj/src/extended/compressed_bitsequence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/compressed_bitsequence.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_out_stream.c -o obj/src/extended/gff3_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_output.c -o obj/src/extended/gff3_output.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/gap_str.c -o obj/src/extended/gap_str.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gap_str.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_parser.c -o obj/src/extended/gff3_parser.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/gff3_escaping.c -o obj/src/extended/gff3_escaping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_escaping.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_visitor.c -o obj/src/extended/gff3_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/gff3_in_stream.c -o obj/src/extended/gff3_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_in_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/globalchaining.c -o obj/src/extended/globalchaining.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/gff3_numsorted_out_stream.c -o obj/src/extended/gff3_numsorted_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_numsorted_out_stream.o cc -c src/extended/gff3_out_stream.c -o obj/src/extended/gff3_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_out_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/golomb.c -o obj/src/extended/golomb.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/gff3_output.c -o obj/src/extended/gff3_output.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_output.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gtdatahelp.c -o obj/src/extended/gtdatahelp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gtf_in_stream.c -o obj/src/extended/gtf_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/condenseq_creator.c -o obj/src/extended/condenseq_creator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/condenseq_creator.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gtf_out_stream.c -o obj/src/extended/gtf_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/diagonalbandalign_affinegapcost.c -o obj/src/extended/diagonalbandalign_affinegapcost.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/diagonalbandalign_affinegapcost.o cc -c src/extended/gff3_in_stream_plain.c -o obj/src/extended/gff3_in_stream_plain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_in_stream_plain.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_linesorted_out_stream.c -o obj/src/extended/gff3_linesorted_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_linesorted_out_stream.o cc -c src/extended/gtf_parser.c -o obj/src/extended/gtf_parser.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/gtf_in_stream.c -o obj/src/extended/gtf_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_in_stream.o cc -c src/extended/gtf_out_stream.c -o obj/src/extended/gtf_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_out_stream.o cc -c src/extended/genome_node.c -o obj/src/extended/genome_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/genome_node.o cc -c src/extended/gtdatahelp.c -o obj/src/extended/gtdatahelp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtdatahelp.o test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gtf_visitor.c -o obj/src/extended/gtf_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/hcr.c -o obj/src/extended/hcr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/gff3_visitor.c -o obj/src/extended/gff3_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/hmm.c -o obj/src/extended/hmm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/globalchaining.c -o obj/src/extended/globalchaining.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/globalchaining.o cc -c src/extended/hpol_processor.c -o obj/src/extended/hpol_processor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/golomb.c -o obj/src/extended/golomb.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/golomb.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/huffcode.c -o obj/src/extended/huffcode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/id_to_md5_stream.c -o obj/src/extended/id_to_md5_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/id_to_md5_visitor.c -o obj/src/extended/id_to_md5_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/inter_feature_stream.c -o obj/src/extended/inter_feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/gtf_visitor.c -o obj/src/extended/gtf_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/inter_feature_visitor.c -o obj/src/extended/inter_feature_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/id_to_md5_stream.c -o obj/src/extended/id_to_md5_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/id_to_md5_stream.o cc -c src/extended/intset.c -o obj/src/extended/intset.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/feature_node.c -o obj/src/extended/feature_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_node.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/inter_feature_stream.c -o obj/src/extended/inter_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/inter_feature_stream.o cc -c src/extended/intset_16.c -o obj/src/extended/intset_16.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/intset_32.c -o obj/src/extended/intset_32.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/intset_8.c -o obj/src/extended/intset_8.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/intset_combined.c -o obj/src/extended/intset_combined.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/id_to_md5_visitor.c -o obj/src/extended/id_to_md5_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/id_to_md5_visitor.o cc -c src/extended/inter_feature_visitor.c -o obj/src/extended/inter_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/inter_feature_visitor.o cc -c src/extended/gtf_parser.c -o obj/src/extended/gtf_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_parser.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/io_function_pointers.c -o obj/src/extended/io_function_pointers.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/intset_combined.c -o obj/src/extended/intset_combined.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_combined.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/kmer_database.c -o obj/src/extended/kmer_database.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/encdesc.c -o obj/src/extended/encdesc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/encdesc.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/io_function_pointers.c -o obj/src/extended/io_function_pointers.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/io_function_pointers.o cc -c src/extended/intset.c -o obj/src/extended/intset.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset.o cc -c src/extended/linearalign.c -o obj/src/extended/linearalign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/linearalign_affinegapcost.c -o obj/src/extended/linearalign_affinegapcost.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/linspace_management.c -o obj/src/extended/linspace_management.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/load_stream.c -o obj/src/extended/load_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/luahelper.c -o obj/src/extended/luahelper.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/intset_32.c -o obj/src/extended/intset_32.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_32.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/luaserialize.c -o obj/src/extended/luaserialize.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/load_stream.c -o obj/src/extended/load_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/load_stream.o cc -c src/extended/intset_16.c -o obj/src/extended/intset_16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_16.o cc -c src/extended/linspace_management.c -o obj/src/extended/linspace_management.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/linspace_management.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/mapping.c -o obj/src/extended/mapping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match.c -o obj/src/extended/match.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/match_blast.c -o obj/src/extended/match_blast.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/luahelper.c -o obj/src/extended/luahelper.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/luahelper.o cc -c src/extended/hmm.c -o obj/src/extended/hmm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/hmm.o cc -c src/extended/intset_8.c -o obj/src/extended/intset_8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_8.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_iterator.c -o obj/src/extended/match_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/editscript.c -o obj/src/extended/editscript.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/editscript.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/mapping.c -o obj/src/extended/mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/mapping.o cc -c src/extended/match_iterator_blast.c -o obj/src/extended/match_iterator_blast.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_iterator_last.c -o obj/src/extended/match_iterator_last.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_iterator_open.c -o obj/src/extended/match_iterator_open.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/match_blast.c -o obj/src/extended/match_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_blast.o cc -c src/extended/match.c -o obj/src/extended/match.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/hpol_processor.c -o obj/src/extended/hpol_processor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/hpol_processor.o cc -c src/extended/linearalign.c -o obj/src/extended/linearalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/linearalign.o cc -c src/extended/match_iterator.c -o obj/src/extended/match_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator.o cc -c src/extended/match_iterator_sw.c -o obj/src/extended/match_iterator_sw.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/luaserialize.c -o obj/src/extended/luaserialize.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/luaserialize.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/hcr.c -o obj/src/extended/hcr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/hcr.o cc -c src/extended/match_last.c -o obj/src/extended/match_last.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_open.c -o obj/src/extended/match_open.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/huffcode.c -o obj/src/extended/huffcode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/huffcode.o cc -c src/extended/match_sw.c -o obj/src/extended/match_sw.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_visitor.c -o obj/src/extended/match_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/maxcoordvalue.c -o obj/src/extended/maxcoordvalue.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/match_last.c -o obj/src/extended/match_last.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_last.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/linearalign_affinegapcost.c -o obj/src/extended/linearalign_affinegapcost.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/linearalign_affinegapcost.o cc -c src/extended/md5_to_id_stream.c -o obj/src/extended/md5_to_id_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/md5_to_id_visitor.c -o obj/src/extended/md5_to_id_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/match_iterator_open.c -o obj/src/extended/match_iterator_open.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator_open.o cc -c src/extended/match_iterator_sw.c -o obj/src/extended/match_iterator_sw.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator_sw.o cc -c src/extended/match_open.c -o obj/src/extended/match_open.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_open.o cc -c src/extended/match_sw.c -o obj/src/extended/match_sw.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_sw.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/kmer_database.c -o obj/src/extended/kmer_database.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/kmer_database.o cc -c src/extended/md5set.c -o obj/src/extended/md5set.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/match_visitor.c -o obj/src/extended/match_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_visitor.o cc -c src/extended/md5_to_id_stream.c -o obj/src/extended/md5_to_id_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/md5_to_id_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_iterator_blast.c -o obj/src/extended/match_iterator_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator_blast.o cc -c src/extended/maxcoordvalue.c -o obj/src/extended/maxcoordvalue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/maxcoordvalue.o cc -c src/extended/merge_feature_stream.c -o obj/src/extended/merge_feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/gff3_parser.c -o obj/src/extended/gff3_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_parser.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/merge_feature_visitor.c -o obj/src/extended/merge_feature_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_iterator_last.c -o obj/src/extended/match_iterator_last.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator_last.o cc -c src/extended/merge_stream.c -o obj/src/extended/merge_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/meta_node.c -o obj/src/extended/meta_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/multi_sanitizer_visitor.c -o obj/src/extended/multi_sanitizer_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/multieoplist.c -o obj/src/extended/multieoplist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/merge_feature_stream.c -o obj/src/extended/merge_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/merge_feature_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/mutate.c -o obj/src/extended/mutate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/md5_to_id_visitor.c -o obj/src/extended/md5_to_id_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/md5_to_id_visitor.o cc -c src/extended/node_stream.c -o obj/src/extended/node_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/node_visitor.c -o obj/src/extended/node_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/obo_parse_tree.c -o obj/src/extended/obo_parse_tree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/md5set.c -o obj/src/extended/md5set.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/md5set.o cc -c src/extended/merge_feature_visitor.c -o obj/src/extended/merge_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/merge_feature_visitor.o cc -c src/extended/meta_node.c -o obj/src/extended/meta_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/meta_node.o cc -c src/extended/multi_sanitizer_visitor.c -o obj/src/extended/multi_sanitizer_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/multi_sanitizer_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/obo_stanza.c -o obj/src/extended/obo_stanza.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/orf_finder_stream.c -o obj/src/extended/orf_finder_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/orf_finder_visitor.c -o obj/src/extended/orf_finder_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/merge_stream.c -o obj/src/extended/merge_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/merge_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/orf_iterator.c -o obj/src/extended/orf_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/node_stream.c -o obj/src/extended/node_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/node_stream.o test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/mutate.c -o obj/src/extended/mutate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/mutate.o cc -c src/extended/node_visitor.c -o obj/src/extended/node_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/node_visitor.o cc -c src/extended/orphanage.c -o obj/src/extended/orphanage.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/permute_words.c -o obj/src/extended/permute_words.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/orf_finder_stream.c -o obj/src/extended/orf_finder_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/orf_finder_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/obo_stanza.c -o obj/src/extended/obo_stanza.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/obo_stanza.o cc -c src/extended/orf_iterator.c -o obj/src/extended/orf_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/orf_iterator.o cc -c src/extended/popcount_tab.c -o obj/src/extended/popcount_tab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/priority_queue.c -o obj/src/extended/priority_queue.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/ranked_list.c -o obj/src/extended/ranked_list.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/permute_words.c -o obj/src/extended/permute_words.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/permute_words.o cc -c src/extended/rbtree.c -o obj/src/extended/rbtree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/rcr.c -o obj/src/extended/rcr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/orphanage.c -o obj/src/extended/orphanage.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/orphanage.o cc -c src/extended/orf_finder_visitor.c -o obj/src/extended/orf_finder_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/orf_finder_visitor.o cc -c src/extended/rdb.c -o obj/src/extended/rdb.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/rdb_sqlite.c -o obj/src/extended/rdb_sqlite.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/rdb_visitor.c -o obj/src/extended/rdb_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/reconstructalignment.c -o obj/src/extended/reconstructalignment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/region_mapping.c -o obj/src/extended/region_mapping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/obo_parse_tree.c -o obj/src/extended/obo_parse_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/obo_parse_tree.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/region_node.c -o obj/src/extended/region_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/region_node_builder.c -o obj/src/extended/region_node_builder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/ranked_list.c -o obj/src/extended/ranked_list.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/ranked_list.o cc -c src/extended/priority_queue.c -o obj/src/extended/priority_queue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/priority_queue.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/regioncov_visitor.c -o obj/src/extended/regioncov_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/multieoplist.c -o obj/src/extended/multieoplist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/multieoplist.o cc -c src/extended/regular_seqid.c -o obj/src/extended/regular_seqid.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/reverse.c -o obj/src/extended/reverse.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/rdb_visitor.c -o obj/src/extended/rdb_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rdb_visitor.o cc -c src/extended/rdb.c -o obj/src/extended/rdb.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rdb.o cc -c src/extended/region_node_builder.c -o obj/src/extended/region_node_builder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/region_node_builder.o cc -c src/extended/popcount_tab.c -o obj/src/extended/popcount_tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/popcount_tab.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/region_node.c -o obj/src/extended/region_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/region_node.o cc -c src/extended/rmq.c -o obj/src/extended/rmq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/safe_popen.c -o obj/src/extended/safe_popen.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/reverse.c -o obj/src/extended/reverse.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/reverse.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/rdb_sqlite.c -o obj/src/extended/rdb_sqlite.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rdb_sqlite.o cc -c src/extended/regular_seqid.c -o obj/src/extended/regular_seqid.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/regular_seqid.o cc -c src/extended/sam_alignment.c -o obj/src/extended/sam_alignment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/regioncov_visitor.c -o obj/src/extended/regioncov_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/regioncov_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sam_query_name_iterator.c -o obj/src/extended/sam_query_name_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/reconstructalignment.c -o obj/src/extended/reconstructalignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/reconstructalignment.o cc -c src/extended/samfile_encseq_mapping.c -o obj/src/extended/samfile_encseq_mapping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/samfile_iterator.c -o obj/src/extended/samfile_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/safe_popen.c -o obj/src/extended/safe_popen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/safe_popen.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sampling.c -o obj/src/extended/sampling.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/sam_query_name_iterator.c -o obj/src/extended/sam_query_name_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sam_query_name_iterator.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/scorehandler.c -o obj/src/extended/scorehandler.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/script_filter.c -o obj/src/extended/script_filter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/script_wrapper_stream.c -o obj/src/extended/script_wrapper_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/script_wrapper_visitor.c -o obj/src/extended/script_wrapper_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/select_stream.c -o obj/src/extended/select_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/samfile_encseq_mapping.c -o obj/src/extended/samfile_encseq_mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/samfile_encseq_mapping.o cc -c src/extended/samfile_iterator.c -o obj/src/extended/samfile_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/samfile_iterator.o cc -c src/extended/select_visitor.c -o obj/src/extended/select_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/script_wrapper_stream.c -o obj/src/extended/script_wrapper_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/script_wrapper_stream.o cc -c src/extended/region_mapping.c -o obj/src/extended/region_mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/region_mapping.o cc -c src/extended/seqid2file.c -o obj/src/extended/seqid2file.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/sam_alignment.c -o obj/src/extended/sam_alignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sam_alignment.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/seqid2seqnum_mapping.c -o obj/src/extended/seqid2seqnum_mapping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/seqpos_classifier.c -o obj/src/extended/seqpos_classifier.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/select_stream.c -o obj/src/extended/select_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/select_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sequence_node.c -o obj/src/extended/sequence_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sequence_node_add_stream.c -o obj/src/extended/sequence_node_add_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/rmq.c -o obj/src/extended/rmq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rmq.o cc -c src/extended/sampling.c -o obj/src/extended/sampling.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sampling.o cc -c src/extended/script_filter.c -o obj/src/extended/script_filter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/script_filter.o cc -c src/extended/script_wrapper_visitor.c -o obj/src/extended/script_wrapper_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/script_wrapper_visitor.o cc -c src/extended/scorehandler.c -o obj/src/extended/scorehandler.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/scorehandler.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sequence_node_out_stream.c -o obj/src/extended/sequence_node_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/seqid2file.c -o obj/src/extended/seqid2file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/seqid2file.o cc -c src/extended/seqpos_classifier.c -o obj/src/extended/seqpos_classifier.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/seqpos_classifier.o cc -c src/extended/sequence_node.c -o obj/src/extended/sequence_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sequence_node_out_visitor.c -o obj/src/extended/sequence_node_out_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/select_visitor.c -o obj/src/extended/select_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/select_visitor.o cc -c src/extended/sequence_node_add_stream.c -o obj/src/extended/sequence_node_add_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node_add_stream.o cc -c src/extended/seqid2seqnum_mapping.c -o obj/src/extended/seqid2seqnum_mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/seqid2seqnum_mapping.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/set_source_visitor.c -o obj/src/extended/set_source_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/shredder.c -o obj/src/extended/shredder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/snp_annotator_stream.c -o obj/src/extended/snp_annotator_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/snp_annotator_visitor.c -o obj/src/extended/snp_annotator_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/sequence_node_out_stream.c -o obj/src/extended/sequence_node_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node_out_stream.o test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sort_stream.c -o obj/src/extended/sort_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/spec_results.c -o obj/src/extended/spec_results.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/set_source_visitor.c -o obj/src/extended/set_source_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/set_source_visitor.o cc -c src/extended/spec_visitor.c -o obj/src/extended/spec_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/splice_site_info_stream.c -o obj/src/extended/splice_site_info_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/splice_site_info_visitor.c -o obj/src/extended/splice_site_info_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/sequence_node_out_visitor.c -o obj/src/extended/sequence_node_out_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node_out_visitor.o cc -c src/extended/shredder.c -o obj/src/extended/shredder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/shredder.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/splicedseq.c -o obj/src/extended/splicedseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sort_stream.c -o obj/src/extended/sort_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sort_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/squarealign.c -o obj/src/extended/squarealign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/sspliced_alignment.c -o obj/src/extended/sspliced_alignment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/snp_annotator_stream.c -o obj/src/extended/snp_annotator_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/snp_annotator_stream.o cc -c src/extended/splice_site_info_stream.c -o obj/src/extended/splice_site_info_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/splice_site_info_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sspliced_alignment_parsing.c -o obj/src/extended/sspliced_alignment_parsing.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/stat_stream.c -o obj/src/extended/stat_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/rbtree.c -o obj/src/extended/rbtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rbtree.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/stat_visitor.c -o obj/src/extended/stat_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/snp_annotator_visitor.c -o obj/src/extended/snp_annotator_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/snp_annotator_visitor.o cc -c src/extended/stream_evaluator.c -o obj/src/extended/stream_evaluator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/splice_site_info_visitor.c -o obj/src/extended/splice_site_info_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/splice_site_info_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/string_matching.c -o obj/src/extended/string_matching.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/splicedseq.c -o obj/src/extended/splicedseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/splicedseq.o cc -c src/extended/sspliced_alignment.c -o obj/src/extended/sspliced_alignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sspliced_alignment.o cc -c src/extended/swalign.c -o obj/src/extended/swalign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/spec_results.c -o obj/src/extended/spec_results.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/spec_results.o cc -c src/extended/sspliced_alignment_parsing.c -o obj/src/extended/sspliced_alignment_parsing.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sspliced_alignment_parsing.o cc -c src/extended/stat_stream.c -o obj/src/extended/stat_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/stat_stream.o test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/tag_value_map.c -o obj/src/extended/tag_value_map.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/targetbest_select_stream.c -o obj/src/extended/targetbest_select_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/tidy_region_node_stream.c -o obj/src/extended/tidy_region_node_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/tidy_region_node_visitor.c -o obj/src/extended/tidy_region_node_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/tir_stream.c -o obj/src/extended/tir_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/squarealign.c -o obj/src/extended/squarealign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/squarealign.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/transcript_bittabs.c -o obj/src/extended/transcript_bittabs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/stat_visitor.c -o obj/src/extended/stat_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/stat_visitor.o cc -c src/extended/transcript_counts.c -o obj/src/extended/transcript_counts.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/tidy_region_node_stream.c -o obj/src/extended/tidy_region_node_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/tidy_region_node_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/transcript_evaluators.c -o obj/src/extended/transcript_evaluators.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/swalign.c -o obj/src/extended/swalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/swalign.o cc -c src/extended/targetbest_select_stream.c -o obj/src/extended/targetbest_select_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/targetbest_select_stream.o cc -c src/extended/spec_visitor.c -o obj/src/extended/spec_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/spec_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/transcript_exons.c -o obj/src/extended/transcript_exons.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/transcript_used_exons.c -o obj/src/extended/transcript_used_exons.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/rcr.c -o obj/src/extended/rcr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rcr.o cc -c src/extended/string_matching.c -o obj/src/extended/string_matching.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/string_matching.o cc -c src/extended/type_checker.c -o obj/src/extended/type_checker.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/transcript_bittabs.c -o obj/src/extended/transcript_bittabs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_bittabs.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/type_checker_builtin.c -o obj/src/extended/type_checker_builtin.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/transcript_counts.c -o obj/src/extended/transcript_counts.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_counts.o cc -c src/extended/transcript_evaluators.c -o obj/src/extended/transcript_evaluators.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_evaluators.o cc -c src/extended/tidy_region_node_visitor.c -o obj/src/extended/tidy_region_node_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/tidy_region_node_visitor.o cc -c src/extended/type_checker_obo.c -o obj/src/extended/type_checker_obo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/type_graph.c -o obj/src/extended/type_graph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/type_node.c -o obj/src/extended/type_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/transcript_used_exons.c -o obj/src/extended/transcript_used_exons.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_used_exons.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/transcript_exons.c -o obj/src/extended/transcript_exons.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_exons.o cc -c src/extended/type_checker_builtin.c -o obj/src/extended/type_checker_builtin.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_checker_builtin.o cc -c src/extended/typecheck_info.c -o obj/src/extended/typecheck_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/uint64hashtable.c -o obj/src/extended/uint64hashtable.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/union_find.c -o obj/src/extended/union_find.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/type_checker.c -o obj/src/extended/type_checker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_checker.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/uniq_stream.c -o obj/src/extended/uniq_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/visitor_stream.c -o obj/src/extended/visitor_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/wtree.c -o obj/src/extended/wtree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/type_checker_obo.c -o obj/src/extended/type_checker_obo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_checker_obo.o test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/wtree_encseq.c -o obj/src/extended/wtree_encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/xrf_abbr_entry.c -o obj/src/extended/xrf_abbr_entry.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/xrf_abbr_parse_tree.c -o obj/src/extended/xrf_abbr_parse_tree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/tag_value_map.c -o obj/src/extended/tag_value_map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/tag_value_map.o cc -c src/extended/typecheck_info.c -o obj/src/extended/typecheck_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/typecheck_info.o cc -c src/extended/xrf_checker.c -o obj/src/extended/xrf_checker.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/encseq.c -o obj/src/core/encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq.o cc -c src/extended/type_graph.c -o obj/src/extended/type_graph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_graph.o cc -c src/extended/visitor_stream.c -o obj/src/extended/visitor_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/visitor_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/xrfcheck_info.c -o obj/src/extended/xrfcheck_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/extended/type_node.c -o obj/src/extended/type_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_node.o cc -c src/extended/union_find.c -o obj/src/extended/union_find.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/union_find.o cc -c src/extended/uniq_stream.c -o obj/src/extended/uniq_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/uniq_stream.o cc -c src/extended/wtree.c -o obj/src/extended/wtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/wtree.o cc -c src/extended/xrf_abbr_entry.c -o obj/src/extended/xrf_abbr_entry.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/xrf_abbr_entry.o cc -c src/gtlua/alphabet_lua.c -o obj/src/gtlua/alphabet_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/annotationsketch_lua.c -o obj/src/gtlua/annotationsketch_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/bittab_lua.c -o obj/src/gtlua/bittab_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/canvas_lua.c -o obj/src/gtlua/canvas_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/xrfcheck_info.c -o obj/src/extended/xrfcheck_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/xrfcheck_info.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/extended/xrf_checker.c -o obj/src/extended/xrf_checker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/xrf_checker.o cc -c src/gtlua/cds_stream_lua.c -o obj/src/gtlua/cds_stream_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/gtlua/annotationsketch_lua.c -o obj/src/gtlua/annotationsketch_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/annotationsketch_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/csa_stream_lua.c -o obj/src/gtlua/csa_stream_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/uint64hashtable.c -o obj/src/extended/uint64hashtable.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/uint64hashtable.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/diagram_lua.c -o obj/src/gtlua/diagram_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/xrf_abbr_parse_tree.c -o obj/src/extended/xrf_abbr_parse_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/xrf_abbr_parse_tree.o cc -c src/extended/tir_stream.c -o obj/src/extended/tir_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/tir_stream.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/encseq_lua.c -o obj/src/gtlua/encseq_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/feature_index_lua.c -o obj/src/gtlua/feature_index_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/gtlua/alphabet_lua.c -o obj/src/gtlua/alphabet_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/alphabet_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/cds_stream_lua.c -o obj/src/gtlua/cds_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/cds_stream_lua.o cc -c src/extended/stream_evaluator.c -o obj/src/extended/stream_evaluator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/stream_evaluator.o cc -c src/gtlua/bittab_lua.c -o obj/src/gtlua/bittab_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/bittab_lua.o cc -c src/gtlua/canvas_lua.c -o obj/src/gtlua/canvas_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/canvas_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/csa_stream_lua.c -o obj/src/gtlua/csa_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/csa_stream_lua.o cc -c src/gtlua/feature_node_iterator_lua.c -o obj/src/gtlua/feature_node_iterator_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/gtlua/diagram_lua.c -o obj/src/gtlua/diagram_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/diagram_lua.o cc -c src/gtlua/feature_stream_lua.c -o obj/src/gtlua/feature_stream_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/feature_visitor_lua.c -o obj/src/gtlua/feature_visitor_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/genome_node_lua.c -o obj/src/gtlua/genome_node_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/genome_stream_lua.c -o obj/src/gtlua/genome_stream_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/genome_visitor_lua.c -o obj/src/gtlua/genome_visitor_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/gtlua/gt_lua.c -o obj/src/gtlua/gt_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/gtcore_lua.c -o obj/src/gtlua/gtcore_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/gtext_lua.c -o obj/src/gtlua/gtext_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/feature_stream_lua.c -o obj/src/gtlua/feature_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/feature_stream_lua.o cc -c src/gtlua/image_info_lua.c -o obj/src/gtlua/image_info_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/gtlua/feature_visitor_lua.c -o obj/src/gtlua/feature_visitor_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/feature_visitor_lua.o cc -c src/gtlua/feature_index_lua.c -o obj/src/gtlua/feature_index_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/feature_index_lua.o cc -c src/gtlua/feature_node_iterator_lua.c -o obj/src/gtlua/feature_node_iterator_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/feature_node_iterator_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/layout_lua.c -o obj/src/gtlua/layout_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/mathsupport_lua.c -o obj/src/gtlua/mathsupport_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/gtlua/gtcore_lua.c -o obj/src/gtlua/gtcore_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/gtcore_lua.o cc -c src/gtlua/gt_lua.c -o obj/src/gtlua/gt_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/gt_lua.o cc -c src/gtlua/gtext_lua.c -o obj/src/gtlua/gtext_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/gtext_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/range_lua.c -o obj/src/gtlua/range_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/region_mapping_lua.c -o obj/src/gtlua/region_mapping_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/gtlua/mathsupport_lua.c -o obj/src/gtlua/mathsupport_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/mathsupport_lua.o cc -c src/gtlua/image_info_lua.c -o obj/src/gtlua/image_info_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/image_info_lua.o cc -c src/gtlua/genome_visitor_lua.c -o obj/src/gtlua/genome_visitor_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/genome_visitor_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/score_matrix_lua.c -o obj/src/gtlua/score_matrix_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/gtlua/genome_stream_lua.c -o obj/src/gtlua/genome_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/genome_stream_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/stream_evaluator_lua.c -o obj/src/gtlua/stream_evaluator_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/wtree_encseq.c -o obj/src/extended/wtree_encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/wtree_encseq.o cc -c src/gtlua/layout_lua.c -o obj/src/gtlua/layout_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/layout_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/translate_lua.c -o obj/src/gtlua/translate_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/apmeoveridx.c -o obj/src/match/apmeoveridx.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/asqg_writer.c -o obj/src/match/asqg_writer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/bare-encseq.c -o obj/src/match/bare-encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/bcktab.c -o obj/src/match/bcktab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/cgr_spacedseed.c -o obj/src/match/cgr_spacedseed.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/gtlua/stream_evaluator_lua.c -o obj/src/gtlua/stream_evaluator_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/stream_evaluator_lua.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/chain2dim.c -o obj/src/match/chain2dim.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/chainofin.c -o obj/src/match/chainofin.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/gtlua/score_matrix_lua.c -o obj/src/gtlua/score_matrix_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/score_matrix_lua.o cc -c src/match/cutendpfx.c -o obj/src/match/cutendpfx.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/gtlua/translate_lua.c -o obj/src/gtlua/translate_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/translate_lua.o cc -c src/gtlua/genome_node_lua.c -o obj/src/gtlua/genome_node_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/genome_node_lua.o cc -c src/gtlua/range_lua.c -o obj/src/gtlua/range_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/range_lua.o cc -c src/gtlua/region_mapping_lua.c -o obj/src/gtlua/region_mapping_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/region_mapping_lua.o cc -c src/match/dbs_spaced_seeds.c -o obj/src/match/dbs_spaced_seeds.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/diagband-struct.c -o obj/src/match/diagband-struct.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/apmeoveridx.c -o obj/src/match/apmeoveridx.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/apmeoveridx.o cc -c src/match/diagbandseed.c -o obj/src/match/diagbandseed.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/asqg_writer.c -o obj/src/match/asqg_writer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/asqg_writer.o cc -c src/match/chainofin.c -o obj/src/match/chainofin.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/chainofin.o test -d obj/src/match || mkdir -p obj/src/match test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/dist-short.c -o obj/src/match/dist-short.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/echoseq.c -o obj/src/match/echoseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-blockcomp-param.c -o obj/src/match/eis-blockcomp-param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/cutendpfx.c -o obj/src/match/cutendpfx.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/cutendpfx.o test -d obj/src/match || mkdir -p obj/src/match test -d obj/src/match || mkdir -p obj/src/match cc -c src/gtlua/encseq_lua.c -o obj/src/gtlua/encseq_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/encseq_lua.o cc -c src/match/cgr_spacedseed.c -o obj/src/match/cgr_spacedseed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/cgr_spacedseed.o cc -c src/match/dbs_spaced_seeds.c -o obj/src/match/dbs_spaced_seeds.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/dbs_spaced_seeds.o cc -c src/match/eis-blockcomp.c -o obj/src/match/eis-blockcomp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/eis-bwtseq-construct.c -o obj/src/match/eis-bwtseq-construct.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq-context-param.c -o obj/src/match/eis-bwtseq-context-param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq-context.c -o obj/src/match/eis-bwtseq-context.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/bare-encseq.c -o obj/src/match/bare-encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/bare-encseq.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq-extinfo.c -o obj/src/match/eis-bwtseq-extinfo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/diagband-struct.c -o obj/src/match/diagband-struct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/diagband-struct.o cc -c src/match/eis-bwtseq-param.c -o obj/src/match/eis-bwtseq-param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq-sass.c -o obj/src/match/eis-bwtseq-sass.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq.c -o obj/src/match/eis-bwtseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/dist-short.c -o obj/src/match/dist-short.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/dist-short.o cc -c src/match/eis-encidxseq-construct.c -o obj/src/match/eis-encidxseq-construct.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/eis-bwtseq-context-param.c -o obj/src/match/eis-bwtseq-context-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-context-param.o cc -c src/match/echoseq.c -o obj/src/match/echoseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/echoseq.o cc -c src/match/eis-blockcomp-param.c -o obj/src/match/eis-blockcomp-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-blockcomp-param.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-encidxseq-param.c -o obj/src/match/eis-encidxseq-param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-encidxseq.c -o obj/src/match/eis-encidxseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-mrangealphabet.c -o obj/src/match/eis-mrangealphabet.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-sa-common.c -o obj/src/match/eis-sa-common.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/eis-seqblocktranslate.c -o obj/src/match/eis-seqblocktranslate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/eis-bwtseq-param.c -o obj/src/match/eis-bwtseq-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-param.o cc -c src/match/eis-encidxseq-param.c -o obj/src/match/eis-encidxseq-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-encidxseq-param.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-seqranges.c -o obj/src/match/eis-seqranges.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/eis-bwtseq-sass.c -o obj/src/match/eis-bwtseq-sass.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-sass.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-sequencemultiread.c -o obj/src/match/eis-sequencemultiread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-specialsrank.c -o obj/src/match/eis-specialsrank.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/eis-bwtseq-construct.c -o obj/src/match/eis-bwtseq-construct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-construct.o cc -c src/match/eis-encidxseq-construct.c -o obj/src/match/eis-encidxseq-construct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-encidxseq-construct.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-sa-common.c -o obj/src/match/eis-sa-common.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-sa-common.o cc -c src/match/eis-suffixarray-interface.c -o obj/src/match/eis-suffixarray-interface.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-suffixerator-interface.c -o obj/src/match/eis-suffixerator-interface.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/eis-specialsrank.c -o obj/src/match/eis-specialsrank.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-specialsrank.o cc -c src/match/eis-sequencemultiread.c -o obj/src/match/eis-sequencemultiread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-sequencemultiread.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-voiditf.c -o obj/src/match/eis-voiditf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/encseq2offset.c -o obj/src/match/encseq2offset.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/eis-mrangealphabet.c -o obj/src/match/eis-mrangealphabet.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-mrangealphabet.o cc -c src/match/eis-encidxseq.c -o obj/src/match/eis-encidxseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-encidxseq.o cc -c src/match/eis-bwtseq-context.c -o obj/src/match/eis-bwtseq-context.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-context.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/enum-patt.c -o obj/src/match/enum-patt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/bcktab.c -o obj/src/match/bcktab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/bcktab.o cc -c src/match/esa-bottomup.c -o obj/src/match/esa-bottomup.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-dfs.c -o obj/src/match/esa-dfs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/encseq2offset.c -o obj/src/match/encseq2offset.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/encseq2offset.o cc -c src/match/esa-lcpintervals.c -o obj/src/match/esa-lcpintervals.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/eis-bwtseq.c -o obj/src/match/eis-bwtseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-map.c -o obj/src/match/esa-map.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/eis-suffixarray-interface.c -o obj/src/match/eis-suffixarray-interface.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-suffixarray-interface.o cc -c src/match/eis-seqranges.c -o obj/src/match/eis-seqranges.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-seqranges.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-maxpairs.c -o obj/src/match/esa-maxpairs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/chain2dim.c -o obj/src/match/chain2dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/chain2dim.o cc -c src/match/eis-seqblocktranslate.c -o obj/src/match/eis-seqblocktranslate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-seqblocktranslate.o cc -c src/match/eis-bwtseq-extinfo.c -o obj/src/match/eis-bwtseq-extinfo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-extinfo.o cc -c src/match/enum-patt.c -o obj/src/match/enum-patt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/enum-patt.o cc -c src/match/eis-suffixerator-interface.c -o obj/src/match/eis-suffixerator-interface.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-suffixerator-interface.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-merge.c -o obj/src/match/esa-merge.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-minunique.c -o obj/src/match/esa-minunique.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-mmsearch.c -o obj/src/match/esa-mmsearch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-scanprj.c -o obj/src/match/esa-scanprj.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-seqread.c -o obj/src/match/esa-seqread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-shulen.c -o obj/src/match/esa-shulen.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-splititv-simple.c -o obj/src/match/esa-splititv-simple.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-lcpintervals.c -o obj/src/match/esa-lcpintervals.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-lcpintervals.o cc -c src/match/esa-splititv.c -o obj/src/match/esa-splititv.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/esa-map.c -o obj/src/match/esa-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-map.o cc -c src/match/esa-dfs.c -o obj/src/match/esa-dfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-dfs.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-minunique.c -o obj/src/match/esa-minunique.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-minunique.o cc -c src/match/esa-spmitvs.c -o obj/src/match/esa-spmitvs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/esa-merge.c -o obj/src/match/esa-merge.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-merge.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-bottomup.c -o obj/src/match/esa-bottomup.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-bottomup.o cc -c src/match/esa-scanprj.c -o obj/src/match/esa-scanprj.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-scanprj.o cc -c src/match/esa-spmsk.c -o obj/src/match/esa-spmsk.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-splititv-simple.c -o obj/src/match/esa-splititv-simple.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-splititv-simple.o cc -c src/match/esa_lcpintervals_visitor.c -o obj/src/match/esa_lcpintervals_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa_spmitvs_visitor.c -o obj/src/match/esa_spmitvs_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa_visitor.c -o obj/src/match/esa_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-accum.c -o obj/src/match/firstcodes-accum.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-cache.c -o obj/src/match/firstcodes-cache.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/esa_lcpintervals_visitor.c -o obj/src/match/esa_lcpintervals_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa_lcpintervals_visitor.o cc -c src/match/esa-spmitvs.c -o obj/src/match/esa-spmitvs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-spmitvs.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-splititv.c -o obj/src/match/esa-splititv.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-splititv.o cc -c src/match/firstcodes-insert.c -o obj/src/match/firstcodes-insert.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/eis-voiditf.c -o obj/src/match/eis-voiditf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-voiditf.o cc -c src/match/esa-seqread.c -o obj/src/match/esa-seqread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-seqread.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-psbuf.c -o obj/src/match/firstcodes-psbuf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-scan.c -o obj/src/match/firstcodes-scan.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/esa_spmitvs_visitor.c -o obj/src/match/esa_spmitvs_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa_spmitvs_visitor.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-spacelog.c -o obj/src/match/firstcodes-spacelog.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/firstcodes-cache.c -o obj/src/match/firstcodes-cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-cache.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-tab.c -o obj/src/match/firstcodes-tab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes.c -o obj/src/match/firstcodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/esa_visitor.c -o obj/src/match/esa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa_visitor.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-fwduni.c -o obj/src/match/fmi-fwduni.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/esa-maxpairs.c -o obj/src/match/esa-maxpairs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-maxpairs.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-psbuf.c -o obj/src/match/firstcodes-psbuf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-psbuf.o cc -c src/match/fmi-keyval.c -o obj/src/match/fmi-keyval.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/esa-spmsk.c -o obj/src/match/esa-spmsk.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-spmsk.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-locate.c -o obj/src/match/fmi-locate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-map.c -o obj/src/match/fmi-map.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-mapspec.c -o obj/src/match/fmi-mapspec.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-mkindex.c -o obj/src/match/fmi-mkindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/firstcodes-spacelog.c -o obj/src/match/firstcodes-spacelog.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-spacelog.o cc -c src/match/fmi-keyval.c -o obj/src/match/fmi-keyval.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-keyval.o cc -c src/match/esa-shulen.c -o obj/src/match/esa-shulen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-shulen.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-save.c -o obj/src/match/fmi-save.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-sufbwtstream.c -o obj/src/match/fmi-sufbwtstream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/ft-eoplist.c -o obj/src/match/ft-eoplist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/fmi-map.c -o obj/src/match/fmi-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-map.o cc -c src/match/esa-mmsearch.c -o obj/src/match/esa-mmsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-mmsearch.o cc -c src/match/fmi-mkindex.c -o obj/src/match/fmi-mkindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-mkindex.o cc -c src/match/fmi-locate.c -o obj/src/match/fmi-locate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-locate.o cc -c src/match/fmi-mapspec.c -o obj/src/match/fmi-mapspec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-mapspec.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/ft-front-generation.c -o obj/src/match/ft-front-generation.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/ft-front-prune.c -o obj/src/match/ft-front-prune.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/fmi-fwduni.c -o obj/src/match/fmi-fwduni.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-fwduni.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/ft-polish.c -o obj/src/match/ft-polish.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-insert.c -o obj/src/match/firstcodes-insert.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-insert.o cc -c src/match/ft-trimstat.c -o obj/src/match/ft-trimstat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-accum.c -o obj/src/match/firstcodes-accum.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-accum.o cc -c src/match/gfa_writer.c -o obj/src/match/gfa_writer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-tab.c -o obj/src/match/firstcodes-tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-tab.o cc -c src/match/giextract.c -o obj/src/match/giextract.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/greedyedist.c -o obj/src/match/greedyedist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-save.c -o obj/src/match/fmi-save.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-save.o cc -c src/match/firstcodes-scan.c -o obj/src/match/firstcodes-scan.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-scan.o cc -c src/match/greedyfwdmat.c -o obj/src/match/greedyfwdmat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/hashfirstcodes.c -o obj/src/match/hashfirstcodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/hlk-version.c -o obj/src/match/hlk-version.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/fmi-sufbwtstream.c -o obj/src/match/fmi-sufbwtstream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-sufbwtstream.o cc -c src/match/ft-polish.c -o obj/src/match/ft-polish.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-polish.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-blockcomp.c -o obj/src/match/eis-blockcomp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-blockcomp.o cc -c src/match/ft-trimstat.c -o obj/src/match/ft-trimstat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-trimstat.o cc -c src/match/hplstore.c -o obj/src/match/hplstore.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/gfa_writer.c -o obj/src/match/gfa_writer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/gfa_writer.o cc -c src/match/idx-limdfs.c -o obj/src/match/idx-limdfs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/hlk-version.c -o obj/src/match/hlk-version.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/hlk-version.o cc -c src/match/greedyedist.c -o obj/src/match/greedyedist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/greedyedist.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/idxlocali.c -o obj/src/match/idxlocali.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/idxlocalidp.c -o obj/src/match/idxlocalidp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/idxlocalisw.c -o obj/src/match/idxlocalisw.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/hashfirstcodes.c -o obj/src/match/hashfirstcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/hashfirstcodes.o cc -c src/match/index_options.c -o obj/src/match/index_options.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/greedyfwdmat.c -o obj/src/match/greedyfwdmat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/greedyfwdmat.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/initbasepower.c -o obj/src/match/initbasepower.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/initeqsvec.c -o obj/src/match/initeqsvec.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/iter-window.c -o obj/src/match/iter-window.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/karlin_altschul_stat.c -o obj/src/match/karlin_altschul_stat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/initbasepower.c -o obj/src/match/initbasepower.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/initbasepower.o cc -c src/match/initeqsvec.c -o obj/src/match/initeqsvec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/initeqsvec.o cc -c src/match/ft-front-generation.c -o obj/src/match/ft-front-generation.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-front-generation.o cc -c src/match/firstcodes.c -o obj/src/match/firstcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes.o cc -c src/match/idxlocali.c -o obj/src/match/idxlocali.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/idxlocali.o cc -c src/match/iter-window.c -o obj/src/match/iter-window.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/iter-window.o cc -c src/match/hplstore.c -o obj/src/match/hplstore.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/hplstore.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/kmer2string.c -o obj/src/match/kmer2string.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/lua_tools.c -o obj/src/match/lua_tools.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/marksubstring.c -o obj/src/match/marksubstring.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/merger-trie.c -o obj/src/match/merger-trie.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/idxlocalidp.c -o obj/src/match/idxlocalidp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/idxlocalidp.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/giextract.c -o obj/src/match/giextract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/giextract.o cc -c src/match/mssufpat.c -o obj/src/match/mssufpat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/kmer2string.c -o obj/src/match/kmer2string.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/kmer2string.o cc -c src/match/idxlocalisw.c -o obj/src/match/idxlocalisw.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/idxlocalisw.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/myersapm.c -o obj/src/match/myersapm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/lua_tools.c -o obj/src/match/lua_tools.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/lua_tools.o cc -c src/match/nullcols.c -o obj/src/match/nullcols.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/optionargmode.c -o obj/src/match/optionargmode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/pck-count-nodes.c -o obj/src/match/pck-count-nodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/pckbucket.c -o obj/src/match/pckbucket.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/pckdfs.c -o obj/src/match/pckdfs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/index_options.c -o obj/src/match/index_options.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/index_options.o cc -c src/match/marksubstring.c -o obj/src/match/marksubstring.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/marksubstring.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/nullcols.c -o obj/src/match/nullcols.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/nullcols.o cc -c src/match/prsqualint.c -o obj/src/match/prsqualint.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/pssm.c -o obj/src/match/pssm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/ft-eoplist.c -o obj/src/match/ft-eoplist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-eoplist.o cc -c src/match/mssufpat.c -o obj/src/match/mssufpat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/mssufpat.o cc -c src/match/optionargmode.c -o obj/src/match/optionargmode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/optionargmode.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/querymatch-align.c -o obj/src/match/querymatch-align.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/myersapm.c -o obj/src/match/myersapm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/myersapm.o cc -c src/match/querymatch-display.c -o obj/src/match/querymatch-display.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/querymatch.c -o obj/src/match/querymatch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/radixsort_str.c -o obj/src/match/radixsort_str.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/pck-count-nodes.c -o obj/src/match/pck-count-nodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/pck-count-nodes.o cc -c src/match/prsqualint.c -o obj/src/match/prsqualint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/prsqualint.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/merger-trie.c -o obj/src/match/merger-trie.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/merger-trie.o cc -c src/match/randomcodes-correct.c -o obj/src/match/randomcodes-correct.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/pckdfs.c -o obj/src/match/pckdfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/pckdfs.o cc -c src/match/randomcodes-find-seldom.c -o obj/src/match/randomcodes-find-seldom.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/randomcodes-hpcorrect.c -o obj/src/match/randomcodes-hpcorrect.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/idx-limdfs.c -o obj/src/match/idx-limdfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/idx-limdfs.o cc -c src/match/pssm.c -o obj/src/match/pssm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/pssm.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/randomcodes-insert.c -o obj/src/match/randomcodes-insert.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/karlin_altschul_stat.c -o obj/src/match/karlin_altschul_stat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/karlin_altschul_stat.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/pckbucket.c -o obj/src/match/pckbucket.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/pckbucket.o cc -c src/match/randomcodes-sfx-partssuf.c -o obj/src/match/randomcodes-sfx-partssuf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/randomcodes-tab.c -o obj/src/match/randomcodes-tab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/randomcodes.c -o obj/src/match/randomcodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-cntlist.c -o obj/src/match/rdj-cntlist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-contfind-bottomup.c -o obj/src/match/rdj-contfind-bottomup.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-contfinder.c -o obj/src/match/rdj-contfinder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/randomcodes-find-seldom.c -o obj/src/match/randomcodes-find-seldom.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-find-seldom.o cc -c src/match/querymatch-align.c -o obj/src/match/querymatch-align.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/querymatch-align.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-contigpaths.c -o obj/src/match/rdj-contigpaths.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/randomcodes-correct.c -o obj/src/match/randomcodes-correct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-correct.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-contigs-graph.c -o obj/src/match/rdj-contigs-graph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-contigs-writer.c -o obj/src/match/rdj-contigs-writer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/rdj-cntlist.c -o obj/src/match/rdj-cntlist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-cntlist.o cc -c src/match/querymatch-display.c -o obj/src/match/querymatch-display.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/querymatch-display.o cc -c src/match/randomcodes-sfx-partssuf.c -o obj/src/match/randomcodes-sfx-partssuf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-sfx-partssuf.o cc -c src/match/randomcodes-tab.c -o obj/src/match/randomcodes-tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-tab.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-errfind.c -o obj/src/match/rdj-errfind.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-ovlfind-bf.c -o obj/src/match/rdj-ovlfind-bf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-ovlfind-dp.c -o obj/src/match/rdj-ovlfind-dp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-ovlfind-gusfield.c -o obj/src/match/rdj-ovlfind-gusfield.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/radixsort_str.c -o obj/src/match/radixsort_str.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/radixsort_str.o cc -c src/match/querymatch.c -o obj/src/match/querymatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/querymatch.o cc -c src/match/randomcodes-insert.c -o obj/src/match/randomcodes-insert.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-insert.o cc -c src/match/rdj-contigpaths.c -o obj/src/match/rdj-contigpaths.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contigpaths.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-ovlfind-kmp.c -o obj/src/match/rdj-ovlfind-kmp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-pairwise.c -o obj/src/match/rdj-pairwise.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-spmfind.c -o obj/src/match/rdj-spmfind.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-spmlist.c -o obj/src/match/rdj-spmlist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/rdj-contigs-writer.c -o obj/src/match/rdj-contigs-writer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contigs-writer.o cc -c src/match/diagbandseed.c -o obj/src/match/diagbandseed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/diagbandseed.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-spmproc.c -o obj/src/match/rdj-spmproc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/rdj-ovlfind-bf.c -o obj/src/match/rdj-ovlfind-bf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-bf.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-strgraph.c -o obj/src/match/rdj-strgraph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-twobitenc-editor.c -o obj/src/match/rdj-twobitenc-editor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/rdj-contfind-bottomup.c -o obj/src/match/rdj-contfind-bottomup.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contfind-bottomup.o cc -c src/match/rdj-errfind.c -o obj/src/match/rdj-errfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-errfind.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-version.c -o obj/src/match/rdj-version.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/randomcodes-hpcorrect.c -o obj/src/match/randomcodes-hpcorrect.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-hpcorrect.o cc -c src/match/ft-front-prune.c -o obj/src/match/ft-front-prune.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-front-prune.o cc -c src/match/rdj-spmproc.c -o obj/src/match/rdj-spmproc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-spmproc.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/reads2twobit.c -o obj/src/match/reads2twobit.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-version.c -o obj/src/match/rdj-version.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-version.o cc -c src/match/reads_libraries_table.c -o obj/src/match/reads_libraries_table.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/rdj-twobitenc-editor.c -o obj/src/match/rdj-twobitenc-editor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-twobitenc-editor.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rectangle-store.c -o obj/src/match/rectangle-store.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/revcompl.c -o obj/src/match/revcompl.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/seed-extend-iter.c -o obj/src/match/seed-extend-iter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/rdj-ovlfind-gusfield.c -o obj/src/match/rdj-ovlfind-gusfield.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-gusfield.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/seed-extend.c -o obj/src/match/seed-extend.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/rdj-ovlfind-dp.c -o obj/src/match/rdj-ovlfind-dp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-dp.o cc -c src/match/reads_libraries_table.c -o obj/src/match/reads_libraries_table.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/reads_libraries_table.o cc -c src/match/rdj-contigs-graph.c -o obj/src/match/rdj-contigs-graph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contigs-graph.o cc -c src/match/rectangle-store.c -o obj/src/match/rectangle-store.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rectangle-store.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-pairwise.c -o obj/src/match/rdj-pairwise.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-pairwise.o cc -c src/match/revcompl.c -o obj/src/match/revcompl.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/revcompl.o cc -c src/match/rdj-ovlfind-kmp.c -o obj/src/match/rdj-ovlfind-kmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-kmp.o cc -c src/match/seed_extend_parts.c -o obj/src/match/seed_extend_parts.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/seqabstract.c -o obj/src/match/seqabstract.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/seqnumrelpos.c -o obj/src/match/seqnumrelpos.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-apfxlen.c -o obj/src/match/sfx-apfxlen.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-bentsedg.c -o obj/src/match/sfx-bentsedg.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-bltrie.c -o obj/src/match/sfx-bltrie.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-copysort.c -o obj/src/match/sfx-copysort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-diffcov.c -o obj/src/match/sfx-diffcov.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/seqnumrelpos.c -o obj/src/match/seqnumrelpos.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seqnumrelpos.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-enumcodes.c -o obj/src/match/sfx-enumcodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/sfx-apfxlen.c -o obj/src/match/sfx-apfxlen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-apfxlen.o cc -c src/match/seed-extend-iter.c -o obj/src/match/seed-extend-iter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seed-extend-iter.o cc -c src/match/seqabstract.c -o obj/src/match/seqabstract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seqabstract.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-lcpvalues.c -o obj/src/match/sfx-lcpvalues.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-linlcp.c -o obj/src/match/sfx-linlcp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/seed_extend_parts.c -o obj/src/match/seed_extend_parts.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seed_extend_parts.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-lwcheck.c -o obj/src/match/sfx-lwcheck.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/rdj-spmfind.c -o obj/src/match/rdj-spmfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-spmfind.o cc -c src/match/sfx-enumcodes.c -o obj/src/match/sfx-enumcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-enumcodes.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-mappedstr.c -o obj/src/match/sfx-mappedstr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/randomcodes.c -o obj/src/match/randomcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes.o cc -c src/match/sfx-maprange.c -o obj/src/match/sfx-maprange.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-spmlist.c -o obj/src/match/rdj-spmlist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-spmlist.o cc -c src/match/sfx-opt.c -o obj/src/match/sfx-opt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-outprj.c -o obj/src/match/sfx-outprj.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-partssuf.c -o obj/src/match/sfx-partssuf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/seed-extend.c -o obj/src/match/seed-extend.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seed-extend.o cc -c src/match/rdj-contfinder.c -o obj/src/match/rdj-contfinder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contfinder.o cc -c src/match/sfx-lwcheck.c -o obj/src/match/sfx-lwcheck.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-lwcheck.o cc -c src/match/sfx-copysort.c -o obj/src/match/sfx-copysort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-copysort.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-radixsort.c -o obj/src/match/sfx-radixsort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-run.c -o obj/src/match/sfx-run.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-lcpvalues.c -o obj/src/match/sfx-lcpvalues.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-lcpvalues.o cc -c src/match/sfx-sain.c -o obj/src/match/sfx-sain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/sfx-opt.c -o obj/src/match/sfx-opt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-opt.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-outprj.c -o obj/src/match/sfx-outprj.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-outprj.o cc -c src/match/sfx-shortreadsort.c -o obj/src/match/sfx-shortreadsort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/sfx-linlcp.c -o obj/src/match/sfx-linlcp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-linlcp.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-suffixer.c -o obj/src/match/sfx-suffixer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-suffixgetset.c -o obj/src/match/sfx-suffixgetset.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-radixsort.c -o obj/src/match/sfx-radixsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-radixsort.o cc -c src/match/sfx-suftaborder.c -o obj/src/match/sfx-suftaborder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/shu-dfs.c -o obj/src/match/shu-dfs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/sfx-bltrie.c -o obj/src/match/sfx-bltrie.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-bltrie.o cc -c src/match/sfx-maprange.c -o obj/src/match/sfx-maprange.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-maprange.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/shu-divergence.c -o obj/src/match/shu-divergence.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/shu-encseq-gc.c -o obj/src/match/shu-encseq-gc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/shu-genomediff.c -o obj/src/match/shu-genomediff.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/sfx-mappedstr.c -o obj/src/match/sfx-mappedstr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-mappedstr.o cc -c src/match/sfx-suftaborder.c -o obj/src/match/sfx-suftaborder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-suftaborder.o cc -c src/match/sfx-partssuf.c -o obj/src/match/sfx-partssuf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-partssuf.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/shu_unitfile.c -o obj/src/match/shu_unitfile.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/sfx-run.c -o obj/src/match/sfx-run.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-run.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/spaced-seeds.c -o obj/src/match/spaced-seeds.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/specialrank.c -o obj/src/match/specialrank.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/shu-encseq-gc.c -o obj/src/match/shu-encseq-gc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-encseq-gc.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/shu_unitfile.c -o obj/src/match/shu_unitfile.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu_unitfile.o cc -c src/match/spmsuftab.c -o obj/src/match/spmsuftab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/shu-divergence.c -o obj/src/match/shu-divergence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-divergence.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/shu-dfs.c -o obj/src/match/shu-dfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-dfs.o cc -c src/match/sfx-bentsedg.c -o obj/src/match/sfx-bentsedg.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-bentsedg.o cc -c src/match/squarededist.c -o obj/src/match/squarededist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/spaced-seeds.c -o obj/src/match/spaced-seeds.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/spaced-seeds.o cc -c src/match/sfx-suffixgetset.c -o obj/src/match/sfx-suffixgetset.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-suffixgetset.o cc -c src/match/specialrank.c -o obj/src/match/specialrank.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/specialrank.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/substriter.c -o obj/src/match/substriter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/spmsuftab.c -o obj/src/match/spmsuftab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/spmsuftab.o cc -c src/match/tagerator.c -o obj/src/match/tagerator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/shu-genomediff.c -o obj/src/match/shu-genomediff.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-genomediff.o cc -c src/match/test-mappedstr.c -o obj/src/match/test-mappedstr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/test-maxpairs.c -o obj/src/match/test-maxpairs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/squarededist.c -o obj/src/match/squarededist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/squarededist.o test -d obj/src/match || mkdir -p obj/src/match test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/test-mergeesa.c -o obj/src/match/test-mergeesa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/test-mtrieins.c -o obj/src/match/test-mtrieins.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/test-pairwise.c -o obj/src/match/test-pairwise.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/substriter.c -o obj/src/match/substriter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/substriter.o test -d obj/src/match || mkdir -p obj/src/match test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/turnwheels.c -o obj/src/match/turnwheels.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/twobits2kmers.c -o obj/src/match/twobits2kmers.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/tyr-map.c -o obj/src/match/tyr-map.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/sfx-shortreadsort.c -o obj/src/match/sfx-shortreadsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-shortreadsort.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/tyr-mersplit.c -o obj/src/match/tyr-mersplit.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/test-mtrieins.c -o obj/src/match/test-mtrieins.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-mtrieins.o cc -c src/match/turnwheels.c -o obj/src/match/turnwheels.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/turnwheels.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/tyr-mkindex.c -o obj/src/match/tyr-mkindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/test-mappedstr.c -o obj/src/match/test-mappedstr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-mappedstr.o cc -c src/match/test-mergeesa.c -o obj/src/match/test-mergeesa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-mergeesa.o cc -c src/match/test-pairwise.c -o obj/src/match/test-pairwise.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-pairwise.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/tyr-occratio.c -o obj/src/match/tyr-occratio.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/test-maxpairs.c -o obj/src/match/test-maxpairs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-maxpairs.o cc -c src/match/tyr-search.c -o obj/src/match/tyr-search.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/xdrop.c -o obj/src/match/xdrop.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/ltr || mkdir -p obj/src/ltr test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/gt_ltrclustering.c -o obj/src/ltr/gt_ltrclustering.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/ltr/gt_ltrdigest.c -o obj/src/ltr/gt_ltrdigest.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/tyr-map.c -o obj/src/match/tyr-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-map.o cc -c src/match/twobits2kmers.c -o obj/src/match/twobits2kmers.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/twobits2kmers.o cc -c src/match/tagerator.c -o obj/src/match/tagerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tagerator.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/match/sfx-diffcov.c -o obj/src/match/sfx-diffcov.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-diffcov.o cc -c src/ltr/gt_ltrharvest.c -o obj/src/ltr/gt_ltrharvest.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltr_classify_stream.c -o obj/src/ltr/ltr_classify_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/tyr-occratio.c -o obj/src/match/tyr-occratio.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-occratio.o cc -c src/ltr/gt_ltrclustering.c -o obj/src/ltr/gt_ltrclustering.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/gt_ltrclustering.o cc -c src/match/tyr-mersplit.c -o obj/src/match/tyr-mersplit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-mersplit.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltr_cluster_prepare_seq_visitor.c -o obj/src/ltr/ltr_cluster_prepare_seq_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/tyr-search.c -o obj/src/match/tyr-search.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-search.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltr_cluster_stream.c -o obj/src/ltr/ltr_cluster_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltr_four_char_motif.c -o obj/src/ltr/ltr_four_char_motif.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/tyr-mkindex.c -o obj/src/match/tyr-mkindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-mkindex.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltr_input_check_visitor.c -o obj/src/ltr/ltr_input_check_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltr_orf_annotator_stream.c -o obj/src/ltr/ltr_orf_annotator_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltr_refseq_match_stream.c -o obj/src/ltr/ltr_refseq_match_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/ltr/gt_ltrdigest.c -o obj/src/ltr/gt_ltrdigest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/gt_ltrdigest.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrdigest_file_out_stream.c -o obj/src/ltr/ltrdigest_file_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/ltr/ltr_four_char_motif.c -o obj/src/ltr/ltr_four_char_motif.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_four_char_motif.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrdigest_pbs_visitor.c -o obj/src/ltr/ltrdigest_pbs_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/gt_ltrharvest.c -o obj/src/ltr/gt_ltrharvest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/gt_ltrharvest.o cc -c src/ltr/ltrdigest_pdom_visitor.c -o obj/src/ltr/ltrdigest_pdom_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/ltr/ltr_input_check_visitor.c -o obj/src/ltr/ltr_input_check_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_input_check_visitor.o cc -c src/ltr/ltr_orf_annotator_stream.c -o obj/src/ltr/ltr_orf_annotator_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_orf_annotator_stream.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrdigest_ppt_visitor.c -o obj/src/ltr/ltrdigest_ppt_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/ltr/ltr_classify_stream.c -o obj/src/ltr/ltr_classify_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_classify_stream.o test -d obj/src/ltr || mkdir -p obj/src/ltr test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrdigest_strand_assign_visitor.c -o obj/src/ltr/ltrdigest_strand_assign_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/ltr/ltrharvest_fasta_out_stream.c -o obj/src/ltr/ltrharvest_fasta_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/ltr/ltr_cluster_prepare_seq_visitor.c -o obj/src/ltr/ltr_cluster_prepare_seq_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_cluster_prepare_seq_visitor.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrharvest_fasta_out_visitor.c -o obj/src/ltr/ltrharvest_fasta_out_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/match/reads2twobit.c -o obj/src/match/reads2twobit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/reads2twobit.o cc -c src/ltr/ltrharvest_stream.c -o obj/src/ltr/ltrharvest_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/ltr/ltrharvest_fasta_out_stream.c -o obj/src/ltr/ltrharvest_fasta_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_fasta_out_stream.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrharvest_tabout_stream.c -o obj/src/ltr/ltrharvest_tabout_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/ltr/ltr_cluster_stream.c -o obj/src/ltr/ltr_cluster_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_cluster_stream.o cc -c src/ltr/ltrdigest_strand_assign_visitor.c -o obj/src/ltr/ltrdigest_strand_assign_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_strand_assign_visitor.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltr_refseq_match_stream.c -o obj/src/ltr/ltr_refseq_match_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_refseq_match_stream.o cc -c src/ltr/ltrharvest_tabout_visitor.c -o obj/src/ltr/ltrharvest_tabout_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/xdrop.c -o obj/src/match/xdrop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/xdrop.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrharvest_fasta_out_visitor.c -o obj/src/ltr/ltrharvest_fasta_out_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_fasta_out_visitor.o cc -c src/ltr/ltrharvest_tabout_stream.c -o obj/src/ltr/ltrharvest_tabout_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_tabout_stream.o test -d obj/src/mgth || mkdir -p obj/src/mgth cc -c src/ltr/pdom_model_set.c -o obj/src/ltr/pdom_model_set.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/ltr/ltrdigest_pbs_visitor.c -o obj/src/ltr/ltrdigest_pbs_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_pbs_visitor.o cc -c src/mgth/metagenomethreader.c -o obj/src/mgth/metagenomethreader.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/mgth || mkdir -p obj/src/mgth test -d obj/src/mgth || mkdir -p obj/src/mgth cc -c src/mgth/mg_codon.c -o obj/src/mgth/mg_codon.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/mgth/mg_combinedscore.c -o obj/src/mgth/mg_combinedscore.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/mgth || mkdir -p obj/src/mgth test -d obj/src/mgth || mkdir -p obj/src/mgth cc -c src/mgth/mg_compute_gene_prediction.c -o obj/src/mgth/mg_compute_gene_prediction.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/mgth/mg_computepath.c -o obj/src/mgth/mg_computepath.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/mgth || mkdir -p obj/src/mgth test -d obj/src/mgth || mkdir -p obj/src/mgth cc -c src/ltr/ltrdigest_ppt_visitor.c -o obj/src/ltr/ltrdigest_ppt_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_ppt_visitor.o cc -c src/mgth/mg_codon.c -o obj/src/mgth/mg_codon.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_codon.o cc -c src/ltr/ltrdigest_file_out_stream.c -o obj/src/ltr/ltrdigest_file_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_file_out_stream.o cc -c src/mgth/mg_outputwriter.c -o obj/src/mgth/mg_outputwriter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/mgth/mg_reverse.c -o obj/src/mgth/mg_reverse.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/mgth || mkdir -p obj/src/mgth cc -c src/mgth/mg_xmlparser.c -o obj/src/mgth/mg_xmlparser.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/ltr/ltrharvest_tabout_visitor.c -o obj/src/ltr/ltrharvest_tabout_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_tabout_visitor.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/ltr/pdom_model_set.c -o obj/src/ltr/pdom_model_set.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/pdom_model_set.o cc -c src/annotationsketch/block.c -o obj/src/annotationsketch/block.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/annotationsketch/canvas.c -o obj/src/annotationsketch/canvas.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/mgth/mg_computepath.c -o obj/src/mgth/mg_computepath.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_computepath.o cc -c src/annotationsketch/canvas_cairo.c -o obj/src/annotationsketch/canvas_cairo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/canvas_cairo_context.c -o obj/src/annotationsketch/canvas_cairo_context.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/canvas_cairo_file.c -o obj/src/annotationsketch/canvas_cairo_file.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/mgth/mg_reverse.c -o obj/src/mgth/mg_reverse.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_reverse.o cc -c src/mgth/metagenomethreader.c -o obj/src/mgth/metagenomethreader.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/metagenomethreader.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/color.c -o obj/src/annotationsketch/color.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/annotationsketch/canvas_cairo_context.c -o obj/src/annotationsketch/canvas_cairo_context.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas_cairo_context.o cc -c src/mgth/mg_xmlparser.c -o obj/src/mgth/mg_xmlparser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_xmlparser.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/coords.c -o obj/src/annotationsketch/coords.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/annotationsketch/canvas_cairo_file.c -o obj/src/annotationsketch/canvas_cairo_file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas_cairo_file.o cc -c src/match/sfx-suffixer.c -o obj/src/match/sfx-suffixer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-suffixer.o cc -c src/mgth/mg_combinedscore.c -o obj/src/mgth/mg_combinedscore.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_combinedscore.o cc -c src/annotationsketch/color.c -o obj/src/annotationsketch/color.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/color.o cc -c src/annotationsketch/canvas.c -o obj/src/annotationsketch/canvas.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas.o cc -c src/match/sfx-sain.c -o obj/src/match/sfx-sain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-sain.o cc -c src/ltr/ltrdigest_pdom_visitor.c -o obj/src/ltr/ltrdigest_pdom_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_pdom_visitor.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/custom_track.c -o obj/src/annotationsketch/custom_track.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/annotationsketch/coords.c -o obj/src/annotationsketch/coords.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/coords.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/custom_track_example.c -o obj/src/annotationsketch/custom_track_example.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/annotationsketch/custom_track_gc_content.c -o obj/src/annotationsketch/custom_track_gc_content.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/custom_track_script_wrapper.c -o obj/src/annotationsketch/custom_track_script_wrapper.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/annotationsketch/diagram.c -o obj/src/annotationsketch/diagram.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/drawing_range.c -o obj/src/annotationsketch/drawing_range.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/element.c -o obj/src/annotationsketch/element.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/mgth/mg_compute_gene_prediction.c -o obj/src/mgth/mg_compute_gene_prediction.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_compute_gene_prediction.o cc -c src/annotationsketch/graphics.c -o obj/src/annotationsketch/graphics.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/graphics_cairo.c -o obj/src/annotationsketch/graphics_cairo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/annotationsketch/gt_sketch.c -o obj/src/annotationsketch/gt_sketch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/annotationsketch/custom_track.c -o obj/src/annotationsketch/custom_track.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/custom_track.o cc -c src/annotationsketch/block.c -o obj/src/annotationsketch/block.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/block.o cc -c src/annotationsketch/custom_track_example.c -o obj/src/annotationsketch/custom_track_example.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/custom_track_example.o cc -c src/annotationsketch/custom_track_script_wrapper.c -o obj/src/annotationsketch/custom_track_script_wrapper.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/custom_track_script_wrapper.o cc -c src/annotationsketch/drawing_range.c -o obj/src/annotationsketch/drawing_range.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/drawing_range.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/gt_sketch_page.c -o obj/src/annotationsketch/gt_sketch_page.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/image_info.c -o obj/src/annotationsketch/image_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/layout.c -o obj/src/annotationsketch/layout.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/line.c -o obj/src/annotationsketch/line.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/line_breaker.c -o obj/src/annotationsketch/line_breaker.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/annotationsketch/custom_track_gc_content.c -o obj/src/annotationsketch/custom_track_gc_content.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/custom_track_gc_content.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/line_breaker_bases.c -o obj/src/annotationsketch/line_breaker_bases.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/annotationsketch/element.c -o obj/src/annotationsketch/element.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/element.o cc -c src/match/rdj-strgraph.c -o obj/src/match/rdj-strgraph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-strgraph.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/line_breaker_captions.c -o obj/src/annotationsketch/line_breaker_captions.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/ltr/ltrharvest_stream.c -o obj/src/ltr/ltrharvest_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_stream.o cc -c src/annotationsketch/image_info.c -o obj/src/annotationsketch/image_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/image_info.o cc -c src/annotationsketch/line_breaker.c -o obj/src/annotationsketch/line_breaker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/line_breaker.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/luastyle.c -o obj/src/annotationsketch/luastyle.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/annotationsketch/line_breaker_bases.c -o obj/src/annotationsketch/line_breaker_bases.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/line_breaker_bases.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/canvas_cairo.c -o obj/src/annotationsketch/canvas_cairo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas_cairo.o cc -c src/annotationsketch/gt_sketch.c -o obj/src/annotationsketch/gt_sketch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/gt_sketch.o cc -c src/annotationsketch/rec_map.c -o obj/src/annotationsketch/rec_map.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/mgth/mg_outputwriter.c -o obj/src/mgth/mg_outputwriter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_outputwriter.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/style.c -o obj/src/annotationsketch/style.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/text_width_calculator.c -o obj/src/annotationsketch/text_width_calculator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/annotationsketch/text_width_calculator_cairo.c -o obj/src/annotationsketch/text_width_calculator_cairo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/gt_sketch_page.c -o obj/src/annotationsketch/gt_sketch_page.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/gt_sketch_page.o cc -c src/annotationsketch/luastyle.c -o obj/src/annotationsketch/luastyle.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/luastyle.o cc -c src/annotationsketch/track.c -o obj/src/annotationsketch/track.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 echo '[gathering public API symbols to obj/public_symbols.lst]' [gathering public API symbols to obj/public_symbols.lst] cc -c src/annotationsketch/line.c -o obj/src/annotationsketch/line.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/line.o printf "VERSION {\n\tglobal:\n" > obj/public_symbols.lst test -d obj/src || mkdir -p obj/src cat src/core/alphabet_api.h src/core/array2dim_api.h src/core/array2dim_sparse_api.h src/core/array3dim_api.h src/core/array_api.h src/core/arraydef_api.h src/core/assert_api.h src/core/basename_api.h src/core/bioseq_api.h src/core/bittab_api.h src/core/bool_matrix_api.h src/core/bsearch_api.h src/core/byte_popcount_api.h src/core/byte_select_api.h src/core/chardef_api.h src/core/class_alloc_api.h src/core/codon_api.h src/core/codon_iterator_api.h src/core/codon_iterator_encseq_api.h src/core/codon_iterator_simple_api.h src/core/compat_api.h src/core/countingsort_api.h src/core/cstr_api.h src/core/cstr_array_api.h src/core/cstr_table_api.h src/core/deprecated_api.h src/core/disc_distri_api.h src/core/divmodmul_api.h src/core/dlist_api.h src/core/encseq_api.h src/core/endianess_api.h src/core/ensure_api.h src/core/error_api.h src/core/fa_api.h src/core/fasta_api.h src/core/fasta_reader_api.h src/core/file_api.h src/core/fileutils_api.h src/core/fptr_api.h src/core/grep_api.h src/core/hashmap_api.h src/core/init_api.h src/core/interval_tree_api.h src/core/log_api.h src/core/logger_api.h src/core/ma_api.h src/core/mathsupport_api.h src/core/md5_encoder_api.h src/core/md5_fingerprint_api.h src/core/md5_seqid_api.h src/core/md5_tab_api.h src/core/minmax_api.h src/core/msort_api.h src/core/multithread_api.h src/core/option_api.h src/core/orf_api.h src/core/output_file_api.h src/core/parseutils_api.h src/core/phase_api.h src/core/qsort_r_api.h src/core/queue_api.h src/core/range_api.h src/core/readmode_api.h src/core/safearith_api.h src/core/score_matrix_api.h src/core/seq_api.h src/core/seq_iterator_api.h src/core/seq_iterator_fastq_api.h src/core/seq_iterator_sequence_buffer_api.h src/core/splitter_api.h src/core/str_api.h src/core/str_array_api.h src/core/str_cache_api.h src/core/strand_api.h src/core/strcmp_api.h src/core/symbol_api.h src/core/thread_api.h src/core/timer_api.h src/core/tool_api.h src/core/toolbox_api.h src/core/tooldriver_api.h src/core/trans_table_api.h src/core/translator_api.h src/core/types_api.h src/core/undef_api.h src/core/unit_testing_api.h src/core/unused_api.h src/core/version_api.h src/core/versionfunc_api.h src/core/warning_api.h src/core/xansi_api.h src/core/xposix_api.h src/core/yarandom_api.h src/extended/add_introns_stream_api.h src/extended/anno_db_gfflike_api.h src/extended/anno_db_schema_api.h src/extended/array_in_stream_api.h src/extended/array_out_stream_api.h src/extended/bed_in_stream_api.h src/extended/buffer_stream_api.h src/extended/cds_stream_api.h src/extended/cds_visitor_api.h src/extended/chain_api.h src/extended/check_boundaries_visitor_api.h src/extended/comment_node_api.h src/extended/consensus_sa_api.h src/extended/csa_stream_api.h src/extended/dup_feature_stream_api.h src/extended/eof_node_api.h src/extended/extract_feature_stream_api.h src/extended/feature_in_stream_api.h src/extended/feature_index_api.h src/extended/feature_index_memory_api.h src/extended/feature_node_api.h src/extended/feature_node_iterator_api.h src/extended/feature_out_stream_api.h src/extended/feature_stream_api.h src/extended/feature_type_api.h src/extended/genome_node_api.h src/extended/gff3_escaping_api.h src/extended/gff3_in_stream_api.h src/extended/gff3_out_stream_api.h src/extended/gff3_parser_api.h src/extended/gff3_visitor_api.h src/extended/globalchaining_api.h src/extended/gtf_in_stream_api.h src/extended/gtf_out_stream_api.h src/extended/id_to_md5_stream_api.h src/extended/inter_feature_stream_api.h src/extended/match_api.h src/extended/match_blast_api.h src/extended/match_iterator_api.h src/extended/match_last_api.h src/extended/match_open_api.h src/extended/match_sw_api.h src/extended/match_visitor_api.h src/extended/md5_to_id_stream_api.h src/extended/merge_feature_stream_api.h src/extended/merge_stream_api.h src/extended/meta_node_api.h src/extended/node_stream_api.h src/extended/node_visitor_api.h src/extended/orf_iterator_api.h src/extended/rbtree_api.h src/extended/rdb_api.h src/extended/rdb_mysql_api.h src/extended/rdb_sqlite_api.h src/extended/rdb_visitor_api.h src/extended/region_mapping_api.h src/extended/region_node_api.h src/extended/regular_seqid_api.h src/extended/reverse_api.h src/extended/script_filter_api.h src/extended/script_wrapper_stream_api.h src/extended/script_wrapper_visitor_api.h src/extended/select_stream_api.h src/extended/seqid2file_api.h src/extended/sequence_node_api.h src/extended/set_source_visitor_api.h src/extended/sort_stream_api.h src/extended/splice_site_info_stream_api.h src/extended/stat_stream_api.h src/extended/tag_value_map_api.h src/extended/type_checker_api.h src/extended/type_checker_builtin_api.h src/extended/type_checker_obo_api.h src/extended/uniq_stream_api.h src/extended/visitor_stream_api.h src/extended/xrf_checker_api.h src/ltr/ltr_classify_stream_api.h src/ltr/ltr_cluster_stream_api.h src/ltr/ltr_orf_annotator_stream_api.h src/ltr/ltr_refseq_match_stream_api.h src/annotationsketch/block_api.h src/annotationsketch/canvas_api.h src/annotationsketch/canvas_cairo_context_api.h src/annotationsketch/canvas_cairo_file_api.h src/annotationsketch/color_api.h src/annotationsketch/custom_track_api.h src/annotationsketch/custom_track_gc_content_api.h src/annotationsketch/custom_track_script_wrapper_api.h src/annotationsketch/diagram_api.h src/annotationsketch/feature_index_api.h src/annotationsketch/feature_index_memory_api.h src/annotationsketch/feature_stream_api.h src/annotationsketch/graphics_api.h src/annotationsketch/graphics_cairo_api.h src/annotationsketch/image_info_api.h src/annotationsketch/layout_api.h src/annotationsketch/rec_map_api.h src/annotationsketch/style_api.h src/annotationsketch/text_width_calculator_api.h src/annotationsketch/text_width_calculator_cairo_api.h | tr ' ' '\n' \ | grep -E '^(gt_[0-9a-zA-Z_]+)(\[|\()' \ | cut -d'[' -f1 | cut -d'(' -f1 | sort | uniq > obj/public_symbols.lst.src cc -c src/annotationsketch/line_breaker_captions.c -o obj/src/annotationsketch/line_breaker_captions.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/line_breaker_captions.o cc -c src/gt.c -o obj/src/gt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src || mkdir -p obj/src cc -c src/gtr.c -o obj/src/gtr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cat src/core/alphabet.c src/core/array.c src/core/array2dim.c src/core/array2dim_sparse.c src/core/array3dim.c src/core/basename.c src/core/bioseq.c src/core/bioseq_col.c src/core/bioseq_iterator.c src/core/bitbuffer.c src/core/bitpackstringop.c src/core/bitpackstringop16.c src/core/bitpackstringop32.c src/core/bitpackstringop64.c src/core/bitpackstringop8.c src/core/bittab.c src/core/bool_matrix.c src/core/bsearch.c src/core/byte_popcount.c src/core/byte_select.c src/core/checkbitpackarray.c src/core/checkbitpackstring-int.c src/core/checkbitpackstring.c src/core/checkbitpackstring16.c src/core/checkbitpackstring32.c src/core/checkbitpackstring64.c src/core/checkbitpackstring8.c src/core/class_alloc.c src/core/class_alloc_lock.c src/core/codon_iterator.c src/core/codon_iterator_encseq.c src/core/codon_iterator_simple.c src/core/colorspace.c src/core/combinatorics.c src/core/compact_ulong_store.c src/core/compat.c src/core/complement.c src/core/countingsort.c src/core/cstr.c src/core/cstr_array.c src/core/cstr_table.c src/core/csvline_reader.c src/core/desc_buffer.c src/core/disc_distri.c src/core/dlist.c src/core/dual-pivot-qsort.c src/core/dyn_bittab.c src/core/dynalloc.c src/core/eansi.c src/core/ebzlib.c src/core/encseq.c src/core/encseq_access_type.c src/core/encseq_col.c src/core/encseq_metadata.c src/core/encseq_options.c src/core/encseq_ptr.c src/core/endianess.c src/core/error.c src/core/example.c src/core/example_a.c src/core/example_b.c src/core/ezlib.c src/core/fa.c src/core/fasta.c src/core/fasta_reader.c src/core/fasta_reader_fsm.c src/core/fasta_reader_rec.c src/core/fasta_reader_seqit.c src/core/fastq.c src/core/file.c src/core/fileutils.c src/core/gc_content.c src/core/grep.c src/core/gtdatapath.c src/core/hashmap.c src/core/hashtable.c src/core/init.c src/core/interval_tree.c src/core/io.c src/core/log.c src/core/logger.c src/core/ma.c src/core/mapspec.c src/core/mathsupport.c src/core/md5_encoder.c src/core/md5_fingerprint.c src/core/md5_seqid.c src/core/md5_tab.c src/core/msort.c src/core/multithread.c src/core/option.c src/core/orf.c src/core/output_file.c src/core/parseutils.c src/core/password_entry.c src/core/phase.c src/core/process.c src/core/progressbar.c src/core/qsort-ulong.c src/core/qsort_r.c src/core/quality.c src/core/queue.c src/core/radix_sort.c src/core/range.c src/core/readmode.c src/core/safearith.c src/core/score_function.c src/core/score_matrix.c src/core/seq.c src/core/seq_col.c src/core/seq_info_cache.c src/core/seq_iterator.c src/core/seq_iterator_fastq.c src/core/seq_iterator_sequence_buffer.c src/core/sequence_buffer.c src/core/sequence_buffer_dust.c src/core/sequence_buffer_embl.c src/core/sequence_buffer_fasta.c src/core/sequence_buffer_fastq.c src/core/sequence_buffer_gb.c src/core/sequence_buffer_plain.c src/core/showtime.c src/core/sig.c src/core/spacepeak.c src/core/splitter.c src/core/str.c src/core/str_array.c src/core/str_cache.c src/core/strand.c src/core/strcmp.c src/core/string_distri.c src/core/symbol.c src/core/thread.c src/core/timer.c src/core/tokenizer.c src/core/tool.c src/core/tool_iterator.c src/core/toolbox.c src/core/tooldriver.c src/core/trans_table.c src/core/translator.c src/core/unit_testing.c src/core/version.c src/core/versionfunc.c src/core/warning.c src/core/xansi.c src/core/xbsd.c src/core/xbzlib.c src/core/xposix.c src/core/xzlib.c src/core/yarandom.c src/extended/add_ids_stream.c src/extended/add_ids_visitor.c src/extended/add_introns_stream.c src/extended/affinealign.c src/extended/aligned_segment.c src/extended/aligned_segments_pile.c src/extended/alignment.c src/extended/anno_db_gfflike.c src/extended/anno_db_schema.c src/extended/array_in_stream.c src/extended/array_out_stream.c src/extended/assembly_stats_calculator.c src/extended/bed_in_stream.c src/extended/bed_parser.c src/extended/bitinstream.c src/extended/bitoutstream.c src/extended/blast_process_call.c src/extended/buffer_stream.c src/extended/cds_check_stream.c src/extended/cds_check_visitor.c src/extended/cds_stream.c src/extended/cds_visitor.c src/extended/chain.c src/extended/check_boundaries_visitor.c src/extended/chseqids_stream.c src/extended/clustered_set.c src/extended/clustered_set_uf.c src/extended/coin_hmm.c src/extended/collect_ids_visitor.c src/extended/comment_node.c src/extended/compressed_bitsequence.c src/extended/condenseq.c src/extended/condenseq_creator.c src/extended/condenseq_search_arguments.c src/extended/consensus_sa.c src/extended/csa_gene.c src/extended/csa_splice_form.c src/extended/csa_stream.c src/extended/csa_variable_strands.c src/extended/csa_visitor.c src/extended/cstr_iterator.c src/extended/diagonalbandalign.c src/extended/diagonalbandalign_affinegapcost.c src/extended/dice_hmm.c src/extended/dot_out_stream.c src/extended/dot_visitor.c src/extended/dup_feature_stream.c src/extended/dup_feature_visitor.c src/extended/editscript.c src/extended/elias_gamma.c src/extended/encdesc.c src/extended/encdesc_header_io.c src/extended/eof_node.c src/extended/evaluator.c src/extended/extract_feature_sequence.c src/extended/extract_feature_stream.c src/extended/extract_feature_visitor.c src/extended/fasta_header_iterator.c src/extended/feature_in_stream.c src/extended/feature_index.c src/extended/feature_index_memory.c src/extended/feature_info.c src/extended/feature_node.c src/extended/feature_node_iterator.c src/extended/feature_node_observer.c src/extended/feature_out_stream.c src/extended/feature_stream.c src/extended/feature_visitor.c src/extended/gap_str.c src/extended/genome_node.c src/extended/gff3_escaping.c src/extended/gff3_in_stream.c src/extended/gff3_in_stream_plain.c src/extended/gff3_linesorted_out_stream.c src/extended/gff3_numsorted_out_stream.c src/extended/gff3_out_stream.c src/extended/gff3_output.c src/extended/gff3_parser.c src/extended/gff3_visitor.c src/extended/globalchaining.c src/extended/golomb.c src/extended/gtdatahelp.c src/extended/gtf_in_stream.c src/extended/gtf_out_stream.c src/extended/gtf_parser.c src/extended/gtf_visitor.c src/extended/hcr.c src/extended/hmm.c src/extended/hpol_processor.c src/extended/huffcode.c src/extended/id_to_md5_stream.c src/extended/id_to_md5_visitor.c src/extended/inter_feature_stream.c src/extended/inter_feature_visitor.c src/extended/intset.c src/extended/intset_16.c src/extended/intset_32.c src/extended/intset_8.c src/extended/intset_combined.c src/extended/io_function_pointers.c src/extended/kmer_database.c src/extended/linearalign.c src/extended/linearalign_affinegapcost.c src/extended/linspace_management.c src/extended/load_stream.c src/extended/luahelper.c src/extended/luaserialize.c src/extended/mapping.c src/extended/match.c src/extended/match_blast.c src/extended/match_iterator.c src/extended/match_iterator_blast.c src/extended/match_iterator_last.c src/extended/match_iterator_open.c src/extended/match_iterator_sw.c src/extended/match_last.c src/extended/match_open.c src/extended/match_sw.c src/extended/match_visitor.c src/extended/maxcoordvalue.c src/extended/md5_to_id_stream.c src/extended/md5_to_id_visitor.c src/extended/md5set.c src/extended/merge_feature_stream.c src/extended/merge_feature_visitor.c src/extended/merge_stream.c src/extended/meta_node.c src/extended/multi_sanitizer_visitor.c src/extended/multieoplist.c src/extended/mutate.c src/extended/node_stream.c src/extended/node_visitor.c src/extended/obo_parse_tree.c src/extended/obo_stanza.c src/extended/orf_finder_stream.c src/extended/orf_finder_visitor.c src/extended/orf_iterator.c src/extended/orphanage.c src/extended/permute_words.c src/extended/popcount_tab.c src/extended/priority_queue.c src/extended/ranked_list.c src/extended/rbtree.c src/extended/rcr.c src/extended/rdb.c src/extended/rdb_sqlite.c src/extended/rdb_visitor.c src/extended/reconstructalignment.c src/extended/region_mapping.c src/extended/region_node.c src/extended/region_node_builder.c src/extended/regioncov_visitor.c src/extended/regular_seqid.c src/extended/reverse.c src/extended/rmq.c src/extended/safe_popen.c src/extended/sam_alignment.c src/extended/sam_query_name_iterator.c src/extended/samfile_encseq_mapping.c src/extended/samfile_iterator.c src/extended/sampling.c src/extended/scorehandler.c src/extended/script_filter.c src/extended/script_wrapper_stream.c src/extended/script_wrapper_visitor.c src/extended/select_stream.c src/extended/select_visitor.c src/extended/seqid2file.c src/extended/seqid2seqnum_mapping.c src/extended/seqpos_classifier.c src/extended/sequence_node.c src/extended/sequence_node_add_stream.c src/extended/sequence_node_out_stream.c src/extended/sequence_node_out_visitor.c src/extended/set_source_visitor.c src/extended/shredder.c src/extended/snp_annotator_stream.c src/extended/snp_annotator_visitor.c src/extended/sort_stream.c src/extended/spec_results.c src/extended/spec_visitor.c src/extended/splice_site_info_stream.c src/extended/splice_site_info_visitor.c src/extended/splicedseq.c src/extended/squarealign.c src/extended/sspliced_alignment.c src/extended/sspliced_alignment_parsing.c src/extended/stat_stream.c src/extended/stat_visitor.c src/extended/stream_evaluator.c src/extended/string_matching.c src/extended/swalign.c src/extended/tag_value_map.c src/extended/targetbest_select_stream.c src/extended/tidy_region_node_stream.c src/extended/tidy_region_node_visitor.c src/extended/tir_stream.c src/extended/transcript_bittabs.c src/extended/transcript_counts.c src/extended/transcript_evaluators.c src/extended/transcript_exons.c src/extended/transcript_used_exons.c src/extended/type_checker.c src/extended/type_checker_builtin.c src/extended/type_checker_obo.c src/extended/type_graph.c src/extended/type_node.c src/extended/typecheck_info.c src/extended/uint64hashtable.c src/extended/union_find.c src/extended/uniq_stream.c src/extended/visitor_stream.c src/extended/wtree.c src/extended/wtree_encseq.c src/extended/xrf_abbr_entry.c src/extended/xrf_abbr_parse_tree.c src/extended/xrf_checker.c src/extended/xrfcheck_info.c src/gtlua/alphabet_lua.c src/gtlua/annotationsketch_lua.c src/gtlua/bittab_lua.c src/gtlua/canvas_lua.c src/gtlua/cds_stream_lua.c src/gtlua/csa_stream_lua.c src/gtlua/diagram_lua.c src/gtlua/encseq_lua.c src/gtlua/feature_index_lua.c src/gtlua/feature_node_iterator_lua.c src/gtlua/feature_stream_lua.c src/gtlua/feature_visitor_lua.c src/gtlua/genome_node_lua.c src/gtlua/genome_stream_lua.c src/gtlua/genome_visitor_lua.c src/gtlua/gt_lua.c src/gtlua/gtcore_lua.c src/gtlua/gtext_lua.c src/gtlua/image_info_lua.c src/gtlua/layout_lua.c src/gtlua/mathsupport_lua.c src/gtlua/range_lua.c src/gtlua/region_mapping_lua.c src/gtlua/score_matrix_lua.c src/gtlua/stream_evaluator_lua.c src/gtlua/translate_lua.c src/match/apmeoveridx.c src/match/asqg_writer.c src/match/bare-encseq.c src/match/bcktab.c src/match/cgr_spacedseed.c src/match/chain2dim.c src/match/chainofin.c src/match/cutendpfx.c src/match/dbs_spaced_seeds.c src/match/diagband-struct.c src/match/diagbandseed.c src/match/dist-short.c src/match/echoseq.c src/match/eis-blockcomp-param.c src/match/eis-blockcomp.c src/match/eis-bwtseq-construct.c src/match/eis-bwtseq-context-param.c src/match/eis-bwtseq-context.c src/match/eis-bwtseq-extinfo.c src/match/eis-bwtseq-param.c src/match/eis-bwtseq-sass.c src/match/eis-bwtseq.c src/match/eis-encidxseq-construct.c src/match/eis-encidxseq-param.c src/match/eis-encidxseq.c src/match/eis-mrangealphabet.c src/match/eis-sa-common.c src/match/eis-seqblocktranslate.c src/match/eis-seqranges.c src/match/eis-sequencemultiread.c src/match/eis-specialsrank.c src/match/eis-suffixarray-interface.c src/match/eis-suffixerator-interface.c src/match/eis-voiditf.c src/match/encseq2offset.c src/match/enum-patt.c src/match/esa-bottomup.c src/match/esa-dfs.c src/match/esa-lcpintervals.c src/match/esa-map.c src/match/esa-maxpairs.c src/match/esa-merge.c src/match/esa-minunique.c src/match/esa-mmsearch.c src/match/esa-scanprj.c src/match/esa-seqread.c src/match/esa-shulen.c src/match/esa-splititv-simple.c src/match/esa-splititv.c src/match/esa-spmitvs.c src/match/esa-spmsk.c src/match/esa_lcpintervals_visitor.c src/match/esa_spmitvs_visitor.c src/match/esa_visitor.c src/match/firstcodes-accum.c src/match/firstcodes-cache.c src/match/firstcodes-insert.c src/match/firstcodes-psbuf.c src/match/firstcodes-scan.c src/match/firstcodes-spacelog.c src/match/firstcodes-tab.c src/match/firstcodes.c src/match/fmi-fwduni.c src/match/fmi-keyval.c src/match/fmi-locate.c src/match/fmi-map.c src/match/fmi-mapspec.c src/match/fmi-mkindex.c src/match/fmi-save.c src/match/fmi-sufbwtstream.c src/match/ft-eoplist.c src/match/ft-front-generation.c src/match/ft-front-prune.c src/match/ft-polish.c src/match/ft-trimstat.c src/match/gfa_writer.c src/match/giextract.c src/match/greedyedist.c src/match/greedyfwdmat.c src/match/hashfirstcodes.c src/match/hlk-version.c src/match/hplstore.c src/match/idx-limdfs.c src/match/idxlocali.c src/match/idxlocalidp.c src/match/idxlocalisw.c src/match/index_options.c src/match/initbasepower.c src/match/initeqsvec.c src/match/iter-window.c src/match/karlin_altschul_stat.c src/match/kmer2string.c src/match/lua_tools.c src/match/marksubstring.c src/match/merger-trie.c src/match/mssufpat.c src/match/myersapm.c src/match/nullcols.c src/match/optionargmode.c src/match/pck-count-nodes.c src/match/pckbucket.c src/match/pckdfs.c src/match/prsqualint.c src/match/pssm.c src/match/querymatch-align.c src/match/querymatch-display.c src/match/querymatch.c src/match/radixsort_str.c src/match/randomcodes-correct.c src/match/randomcodes-find-seldom.c src/match/randomcodes-hpcorrect.c src/match/randomcodes-insert.c src/match/randomcodes-sfx-partssuf.c src/match/randomcodes-tab.c src/match/randomcodes.c src/match/rdj-cntlist.c src/match/rdj-contfind-bottomup.c src/match/rdj-contfinder.c src/match/rdj-contigpaths.c src/match/rdj-contigs-graph.c src/match/rdj-contigs-writer.c src/match/rdj-errfind.c src/match/rdj-ovlfind-bf.c src/match/rdj-ovlfind-dp.c src/match/rdj-ovlfind-gusfield.c src/match/rdj-ovlfind-kmp.c src/match/rdj-pairwise.c src/match/rdj-spmfind.c src/match/rdj-spmlist.c src/match/rdj-spmproc.c src/match/rdj-strgraph.c src/match/rdj-twobitenc-editor.c src/match/rdj-version.c src/match/reads2twobit.c src/match/reads_libraries_table.c src/match/rectangle-store.c src/match/revcompl.c src/match/seed-extend-iter.c src/match/seed-extend.c src/match/seed_extend_parts.c src/match/seqabstract.c src/match/seqnumrelpos.c src/match/sfx-apfxlen.c src/match/sfx-bentsedg.c src/match/sfx-bltrie.c src/match/sfx-copysort.c src/match/sfx-diffcov.c src/match/sfx-enumcodes.c src/match/sfx-lcpvalues.c src/match/sfx-linlcp.c src/match/sfx-lwcheck.c src/match/sfx-mappedstr.c src/match/sfx-maprange.c src/match/sfx-opt.c src/match/sfx-outprj.c src/match/sfx-partssuf.c src/match/sfx-radixsort.c src/match/sfx-run.c src/match/sfx-sain.c src/match/sfx-shortreadsort.c src/match/sfx-suffixer.c src/match/sfx-suffixgetset.c src/match/sfx-suftaborder.c src/match/shu-dfs.c src/match/shu-divergence.c src/match/shu-encseq-gc.c src/match/shu-genomediff.c src/match/shu_unitfile.c src/match/spaced-seeds.c src/match/specialrank.c src/match/spmsuftab.c src/match/squarededist.c src/match/substriter.c src/match/tagerator.c src/match/test-mappedstr.c src/match/test-maxpairs.c src/match/test-mergeesa.c src/match/test-mtrieins.c src/match/test-pairwise.c src/match/turnwheels.c src/match/twobits2kmers.c src/match/tyr-map.c src/match/tyr-mersplit.c src/match/tyr-mkindex.c src/match/tyr-occratio.c src/match/tyr-search.c src/match/xdrop.c src/ltr/gt_ltrclustering.c src/ltr/gt_ltrdigest.c src/ltr/gt_ltrharvest.c src/ltr/ltr_classify_stream.c src/ltr/ltr_cluster_prepare_seq_visitor.c src/ltr/ltr_cluster_stream.c src/ltr/ltr_four_char_motif.c src/ltr/ltr_input_check_visitor.c src/ltr/ltr_orf_annotator_stream.c src/ltr/ltr_refseq_match_stream.c src/ltr/ltrdigest_file_out_stream.c src/ltr/ltrdigest_pbs_visitor.c src/ltr/ltrdigest_pdom_visitor.c src/ltr/ltrdigest_ppt_visitor.c src/ltr/ltrdigest_strand_assign_visitor.c src/ltr/ltrharvest_fasta_out_stream.c src/ltr/ltrharvest_fasta_out_visitor.c src/ltr/ltrharvest_stream.c src/ltr/ltrharvest_tabout_stream.c src/ltr/ltrharvest_tabout_visitor.c src/ltr/pdom_model_set.c src/mgth/metagenomethreader.c src/mgth/mg_codon.c src/mgth/mg_combinedscore.c src/mgth/mg_compute_gene_prediction.c src/mgth/mg_computepath.c src/mgth/mg_outputwriter.c src/mgth/mg_reverse.c src/mgth/mg_xmlparser.c src/annotationsketch/block.c src/annotationsketch/canvas.c src/annotationsketch/canvas_cairo.c src/annotationsketch/canvas_cairo_context.c src/annotationsketch/canvas_cairo_file.c src/annotationsketch/color.c src/annotationsketch/coords.c src/annotationsketch/custom_track.c src/annotationsketch/custom_track_example.c src/annotationsketch/custom_track_gc_content.c src/annotationsketch/custom_track_script_wrapper.c src/annotationsketch/diagram.c src/annotationsketch/drawing_range.c src/annotationsketch/element.c src/annotationsketch/graphics.c src/annotationsketch/graphics_cairo.c src/annotationsketch/gt_sketch.c src/annotationsketch/gt_sketch_page.c src/annotationsketch/image_info.c src/annotationsketch/layout.c src/annotationsketch/line.c src/annotationsketch/line_breaker.c src/annotationsketch/line_breaker_bases.c src/annotationsketch/line_breaker_captions.c src/annotationsketch/luastyle.c src/annotationsketch/rec_map.c src/annotationsketch/style.c src/annotationsketch/text_width_calculator.c src/annotationsketch/text_width_calculator_cairo.c src/annotationsketch/track.c | tr ' ' '\n' \ | grep -E '(gt_[0-9a-zA-Z_]+_p)(\[|\()' \ | cut -d'(' -f1 >> obj/public_symbols.lst.src test -d obj/src || mkdir -p obj/src test -d obj/src || mkdir -p obj/src cc -c src/gtt.c -o obj/src/gtt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/interactive.c -o obj/src/interactive.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/annotationsketch/diagram.c -o obj/src/annotationsketch/diagram.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/diagram.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/annotationsketch/rec_map.c -o obj/src/annotationsketch/rec_map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/rec_map.o cc -c src/annotationsketch/layout.c -o obj/src/annotationsketch/layout.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/layout.o cc -c src/annotationsketch/text_width_calculator.c -o obj/src/annotationsketch/text_width_calculator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/text_width_calculator.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_bed_to_gff3.c -o obj/src/tools/gt_bed_to_gff3.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_cds.c -o obj/src/tools/gt_cds.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools for L in `cat obj/public_symbols.lst.src`; do \ printf "\t\t$L;\n" >> obj/public_symbols.lst; \ done; cc -c src/gt.c -o obj/src/gt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gt.o cc -c src/tools/gt_chain2dim.c -o obj/src/tools/gt_chain2dim.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_chseqids.c -o obj/src/tools/gt_chseqids.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 printf "\t\tgt_array_add_ptr;\n" >> obj/public_symbols.lst printf "\t\tgt_str_get_mem;\n" >> obj/public_symbols.lst printf '\tlocal: *;\n\t};\n' >> obj/public_symbols.lst test -d obj/src/tools || mkdir -p obj/src/tools test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_clean.c -o obj/src/tools/gt_clean.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_compreads.c -o obj/src/tools/gt_compreads.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_compreads_compress.c -o obj/src/tools/gt_compreads_compress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/interactive.c -o obj/src/interactive.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/interactive.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_compreads_decompress.c -o obj/src/tools/gt_compreads_decompress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_bed_to_gff3.c -o obj/src/tools/gt_bed_to_gff3.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_bed_to_gff3.o cc -c src/tools/gt_cds.c -o obj/src/tools/gt_cds.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_cds.o cc -c src/annotationsketch/graphics.c -o obj/src/annotationsketch/graphics.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/graphics.o cc -c src/annotationsketch/text_width_calculator_cairo.c -o obj/src/annotationsketch/text_width_calculator_cairo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/text_width_calculator_cairo.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_clean.c -o obj/src/tools/gt_clean.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_clean.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/gtt.c -o obj/src/gtt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtt.o cc -c src/tools/gt_compreads_refcompress.c -o obj/src/tools/gt_compreads_refcompress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_compreads_refdecompress.c -o obj/src/tools/gt_compreads_refdecompress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_chseqids.c -o obj/src/tools/gt_chseqids.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_chseqids.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_compressedbits.c -o obj/src/tools/gt_compressedbits.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_condenseq.c -o obj/src/tools/gt_condenseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_chain2dim.c -o obj/src/tools/gt_chain2dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_chain2dim.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_condenseq_blast.c -o obj/src/tools/gt_condenseq_blast.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_condenseq_compress.c -o obj/src/tools/gt_condenseq_compress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_condenseq_extract.c -o obj/src/tools/gt_condenseq_extract.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_compreads.c -o obj/src/tools/gt_compreads.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/annotationsketch/track.c -o obj/src/annotationsketch/track.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/track.o cc -c src/tools/gt_condenseq_hmmsearch.c -o obj/src/tools/gt_condenseq_hmmsearch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_compreads_compress.c -o obj/src/tools/gt_compreads_compress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_compress.o cc -c src/tools/gt_condenseq_info.c -o obj/src/tools/gt_condenseq_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_condenseq_search.c -o obj/src/tools/gt_condenseq_search.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_congruence.c -o obj/src/tools/gt_congruence.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_compreads_decompress.c -o obj/src/tools/gt_compreads_decompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_decompress.o cc -c src/tools/gt_condenseq.c -o obj/src/tools/gt_condenseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq.o cc -c src/tools/gt_compreads_refdecompress.c -o obj/src/tools/gt_compreads_refdecompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_refdecompress.o cc -c src/gtr.c -o obj/src/gtr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtr.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/annotationsketch/graphics_cairo.c -o obj/src/annotationsketch/graphics_cairo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/graphics_cairo.o cc -c src/tools/gt_consensus_sa.c -o obj/src/tools/gt_consensus_sa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_compreads_refcompress.c -o obj/src/tools/gt_compreads_refcompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_refcompress.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_convertseq.c -o obj/src/tools/gt_convertseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_csa.c -o obj/src/tools/gt_csa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_compressedbits.c -o obj/src/tools/gt_compressedbits.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compressedbits.o cc -c src/tools/gt_condenseq_search.c -o obj/src/tools/gt_condenseq_search.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_search.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_dev.c -o obj/src/tools/gt_dev.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_condenseq_extract.c -o obj/src/tools/gt_condenseq_extract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_extract.o cc -c src/tools/gt_condenseq_info.c -o obj/src/tools/gt_condenseq_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_info.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_condenseq_compress.c -o obj/src/tools/gt_condenseq_compress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_compress.o cc -c src/tools/gt_dot.c -o obj/src/tools/gt_dot.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_dupfeat.c -o obj/src/tools/gt_dupfeat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_congruence.c -o obj/src/tools/gt_congruence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_congruence.o cc -c src/tools/gt_consensus_sa.c -o obj/src/tools/gt_consensus_sa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_consensus_sa.o cc -c src/tools/gt_encseq.c -o obj/src/tools/gt_encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq2spm.c -o obj/src/tools/gt_encseq2spm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_csa.c -o obj/src/tools/gt_csa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_csa.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq_bench.c -o obj/src/tools/gt_encseq_bench.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq_bitextract.c -o obj/src/tools/gt_encseq_bitextract.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_encseq_check.c -o obj/src/tools/gt_encseq_check.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq_decode.c -o obj/src/tools/gt_encseq_decode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq_encode.c -o obj/src/tools/gt_encseq_encode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_encseq_info.c -o obj/src/tools/gt_encseq_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/annotationsketch/style.c -o obj/src/annotationsketch/style.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/style.o cc -c src/tools/gt_dev.c -o obj/src/tools/gt_dev.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_dev.o cc -c src/tools/gt_dot.c -o obj/src/tools/gt_dot.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_dot.o cc -c src/tools/gt_convertseq.c -o obj/src/tools/gt_convertseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_convertseq.o cc -c src/tools/gt_dupfeat.c -o obj/src/tools/gt_dupfeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_dupfeat.o cc -c src/tools/gt_encseq.c -o obj/src/tools/gt_encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq.o cc -c src/tools/gt_condenseq_hmmsearch.c -o obj/src/tools/gt_condenseq_hmmsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_hmmsearch.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq_md5.c -o obj/src/tools/gt_encseq_md5.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq_sample.c -o obj/src/tools/gt_encseq_sample.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_eval.c -o obj/src/tools/gt_eval.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_extractfeat.c -o obj/src/tools/gt_extractfeat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_extractseq.c -o obj/src/tools/gt_extractseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_encseq_check.c -o obj/src/tools/gt_encseq_check.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_check.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_extracttarget.c -o obj/src/tools/gt_extracttarget.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_fastq_sample.c -o obj/src/tools/gt_fastq_sample.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_encseq_bitextract.c -o obj/src/tools/gt_encseq_bitextract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_bitextract.o cc -c src/tools/gt_encseq_encode.c -o obj/src/tools/gt_encseq_encode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_encode.o cc -c src/tools/gt_condenseq_blast.c -o obj/src/tools/gt_condenseq_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_blast.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_featureindex.c -o obj/src/tools/gt_featureindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_encseq_decode.c -o obj/src/tools/gt_encseq_decode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_decode.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_fingerprint.c -o obj/src/tools/gt_fingerprint.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_encseq2spm.c -o obj/src/tools/gt_encseq2spm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq2spm.o cc -c src/tools/gt_encseq_md5.c -o obj/src/tools/gt_encseq_md5.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_md5.o cc -c src/tools/gt_eval.c -o obj/src/tools/gt_eval.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_eval.o cc -c src/tools/gt_extractfeat.c -o obj/src/tools/gt_extractfeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_extractfeat.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_gdiffcalc.c -o obj/src/tools/gt_gdiffcalc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_genomediff.c -o obj/src/tools/gt_genomediff.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_gff3.c -o obj/src/tools/gt_gff3.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_gff3_to_gtf.c -o obj/src/tools/gt_gff3_to_gtf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_gff3validator.c -o obj/src/tools/gt_gff3validator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_gtf_to_gff3.c -o obj/src/tools/gt_gtf_to_gff3.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_encseq_info.c -o obj/src/tools/gt_encseq_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_info.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq_bench.c -o obj/src/tools/gt_encseq_bench.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_bench.o cc -c src/tools/gt_encseq_sample.c -o obj/src/tools/gt_encseq_sample.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_sample.o cc -c src/tools/gt_extractseq.c -o obj/src/tools/gt_extractseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_extractseq.o cc -c src/tools/gt_extracttarget.c -o obj/src/tools/gt_extracttarget.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_extracttarget.o cc -c src/tools/gt_guessprot.c -o obj/src/tools/gt_guessprot.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_fastq_sample.c -o obj/src/tools/gt_fastq_sample.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_fastq_sample.o cc -c src/tools/gt_hop.c -o obj/src/tools/gt_hop.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_featureindex.c -o obj/src/tools/gt_featureindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_featureindex.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_id_to_md5.c -o obj/src/tools/gt_id_to_md5.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_idxlocali.c -o obj/src/tools/gt_idxlocali.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_gff3_to_gtf.c -o obj/src/tools/gt_gff3_to_gtf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gff3_to_gtf.o cc -c src/tools/gt_gtf_to_gff3.c -o obj/src/tools/gt_gtf_to_gff3.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gtf_to_gff3.o cc -c src/tools/gt_gff3validator.c -o obj/src/tools/gt_gff3validator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gff3validator.o cc -c src/tools/gt_inlineseq_add.c -o obj/src/tools/gt_inlineseq_add.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_inlineseq_split.c -o obj/src/tools/gt_inlineseq_split.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_interfeat.c -o obj/src/tools/gt_interfeat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_guessprot.c -o obj/src/tools/gt_guessprot.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_guessprot.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_kmer_database.c -o obj/src/tools/gt_kmer_database.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_gff3.c -o obj/src/tools/gt_gff3.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gff3.o cc -c src/tools/gt_linspace_align.c -o obj/src/tools/gt_linspace_align.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_fingerprint.c -o obj/src/tools/gt_fingerprint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_fingerprint.o cc -c src/tools/gt_loccheck.c -o obj/src/tools/gt_loccheck.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_inlineseq_add.c -o obj/src/tools/gt_inlineseq_add.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_inlineseq_add.o cc -c src/tools/gt_idxlocali.c -o obj/src/tools/gt_idxlocali.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_idxlocali.o cc -c src/tools/gt_gdiffcalc.c -o obj/src/tools/gt_gdiffcalc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gdiffcalc.o cc -c src/tools/gt_genomediff.c -o obj/src/tools/gt_genomediff.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_genomediff.o cc -c src/tools/gt_id_to_md5.c -o obj/src/tools/gt_id_to_md5.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_id_to_md5.o cc -c src/tools/gt_interfeat.c -o obj/src/tools/gt_interfeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_interfeat.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_magicmatch.c -o obj/src/tools/gt_magicmatch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_inlineseq_split.c -o obj/src/tools/gt_inlineseq_split.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_inlineseq_split.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_matchtool.c -o obj/src/tools/gt_matchtool.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_matstat.c -o obj/src/tools/gt_matstat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_md5_to_id.c -o obj/src/tools/gt_md5_to_id.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_loccheck.c -o obj/src/tools/gt_loccheck.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_loccheck.o cc -c src/tools/gt_merge.c -o obj/src/tools/gt_merge.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_mergeesa.c -o obj/src/tools/gt_mergeesa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_mergefeat.c -o obj/src/tools/gt_mergefeat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_mgth.c -o obj/src/tools/gt_mgth.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_mkfeatureindex.c -o obj/src/tools/gt_mkfeatureindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_magicmatch.c -o obj/src/tools/gt_magicmatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_magicmatch.o cc -c src/tools/gt_mkfmindex.c -o obj/src/tools/gt_mkfmindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_hop.c -o obj/src/tools/gt_hop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_hop.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_mmapandread.c -o obj/src/tools/gt_mmapandread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_mergeesa.c -o obj/src/tools/gt_mergeesa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mergeesa.o cc -c src/tools/gt_md5_to_id.c -o obj/src/tools/gt_md5_to_id.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_md5_to_id.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_orffinder.c -o obj/src/tools/gt_orffinder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_merge.c -o obj/src/tools/gt_merge.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_merge.o cc -c src/tools/gt_mgth.c -o obj/src/tools/gt_mgth.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mgth.o cc -c src/tools/gt_mergefeat.c -o obj/src/tools/gt_mergefeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mergefeat.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_packedindex.c -o obj/src/tools/gt_packedindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_mkfmindex.c -o obj/src/tools/gt_mkfmindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mkfmindex.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_packedindex_chk_integrity.c -o obj/src/tools/gt_packedindex_chk_integrity.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_packedindex_chk_search.c -o obj/src/tools/gt_packedindex_chk_search.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_kmer_database.c -o obj/src/tools/gt_kmer_database.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_kmer_database.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_packedindex_mkctxmap.c -o obj/src/tools/gt_packedindex_mkctxmap.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_packedindex_trsuftab.c -o obj/src/tools/gt_packedindex_trsuftab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_mmapandread.c -o obj/src/tools/gt_mmapandread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mmapandread.o cc -c src/tools/gt_paircmp.c -o obj/src/tools/gt_paircmp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_mkfeatureindex.c -o obj/src/tools/gt_mkfeatureindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mkfeatureindex.o cc -c src/tools/gt_matstat.c -o obj/src/tools/gt_matstat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_matstat.o cc -c src/tools/gt_matchtool.c -o obj/src/tools/gt_matchtool.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_matchtool.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_parsexrf.c -o obj/src/tools/gt_parsexrf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_patternmatch.c -o obj/src/tools/gt_patternmatch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_packedindex.c -o obj/src/tools/gt_packedindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex.o cc -c src/tools/gt_prebwt.c -o obj/src/tools/gt_prebwt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner.c -o obj/src/tools/gt_readjoiner.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_readjoiner_asqg.c -o obj/src/tools/gt_readjoiner_asqg.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_assembly.c -o obj/src/tools/gt_readjoiner_assembly.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_cgraph.c -o obj/src/tools/gt_readjoiner_cgraph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_orffinder.c -o obj/src/tools/gt_orffinder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_orffinder.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_cnttest.c -o obj/src/tools/gt_readjoiner_cnttest.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_parsexrf.c -o obj/src/tools/gt_parsexrf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_parsexrf.o cc -c src/tools/gt_packedindex_chk_integrity.c -o obj/src/tools/gt_packedindex_chk_integrity.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex_chk_integrity.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_correct.c -o obj/src/tools/gt_readjoiner_correct.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_gfa.c -o obj/src/tools/gt_readjoiner_gfa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_packedindex_trsuftab.c -o obj/src/tools/gt_packedindex_trsuftab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex_trsuftab.o cc -c src/tools/gt_packedindex_mkctxmap.c -o obj/src/tools/gt_packedindex_mkctxmap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex_mkctxmap.o cc -c src/tools/gt_prebwt.c -o obj/src/tools/gt_prebwt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_prebwt.o cc -c src/tools/gt_readjoiner.c -o obj/src/tools/gt_readjoiner.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner.o cc -c src/tools/gt_linspace_align.c -o obj/src/tools/gt_linspace_align.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_linspace_align.o test -d obj/src/tools || mkdir -p obj/src/tools test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_graph.c -o obj/src/tools/gt_readjoiner_graph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_readjoiner_overlap.c -o obj/src/tools/gt_readjoiner_overlap.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_paircmp.c -o obj/src/tools/gt_paircmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_paircmp.o cc -c src/tools/gt_packedindex_chk_search.c -o obj/src/tools/gt_packedindex_chk_search.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex_chk_search.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_prefilter.c -o obj/src/tools/gt_readjoiner_prefilter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_spmtest.c -o obj/src/tools/gt_readjoiner_spmtest.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_readreads.c -o obj/src/tools/gt_readreads.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_patternmatch.c -o obj/src/tools/gt_patternmatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_patternmatch.o cc -c src/tools/gt_regioncov.c -o obj/src/tools/gt_regioncov.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_repfind.c -o obj/src/tools/gt_repfind.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_cgraph.c -o obj/src/tools/gt_readjoiner_cgraph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_cgraph.o cc -c src/tools/gt_readjoiner_cnttest.c -o obj/src/tools/gt_readjoiner_cnttest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_cnttest.o cc -c src/tools/gt_readjoiner_correct.c -o obj/src/tools/gt_readjoiner_correct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_correct.o cc -c src/tools/gt_sain.c -o obj/src/tools/gt_sain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_sam_interface.c -o obj/src/tools/gt_sam_interface.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_script_filter.c -o obj/src/tools/gt_script_filter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seed_extend.c -o obj/src/tools/gt_seed_extend.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_regioncov.c -o obj/src/tools/gt_regioncov.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_regioncov.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_select.c -o obj/src/tools/gt_select.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_readjoiner_asqg.c -o obj/src/tools/gt_readjoiner_asqg.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_asqg.o test -d obj/src/tools || mkdir -p obj/src/tools test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seq.c -o obj/src/tools/gt_seq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_seqcorrect.c -o obj/src/tools/gt_seqcorrect.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_readreads.c -o obj/src/tools/gt_readreads.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readreads.o cc -c src/tools/gt_readjoiner_spmtest.c -o obj/src/tools/gt_readjoiner_spmtest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_spmtest.o cc -c src/tools/gt_readjoiner_overlap.c -o obj/src/tools/gt_readjoiner_overlap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_overlap.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_sam_interface.c -o obj/src/tools/gt_sam_interface.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sam_interface.o cc -c src/tools/gt_readjoiner_gfa.c -o obj/src/tools/gt_readjoiner_gfa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_gfa.o cc -c src/tools/gt_seqfilter.c -o obj/src/tools/gt_seqfilter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_script_filter.c -o obj/src/tools/gt_script_filter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_script_filter.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqids.c -o obj/src/tools/gt_seqids.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqlensort.c -o obj/src/tools/gt_seqlensort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqmutate.c -o obj/src/tools/gt_seqmutate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqorder.c -o obj/src/tools/gt_seqorder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqstat.c -o obj/src/tools/gt_seqstat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_readjoiner_prefilter.c -o obj/src/tools/gt_readjoiner_prefilter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_prefilter.o cc -c src/tools/gt_readjoiner_assembly.c -o obj/src/tools/gt_readjoiner_assembly.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_assembly.o cc -c src/tools/gt_readjoiner_graph.c -o obj/src/tools/gt_readjoiner_graph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_graph.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqids.c -o obj/src/tools/gt_seqids.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqids.o cc -c src/tools/gt_seqtransform.c -o obj/src/tools/gt_seqtransform.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_select.c -o obj/src/tools/gt_select.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_select.o cc -c src/tools/gt_seq.c -o obj/src/tools/gt_seq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seq.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqtranslate.c -o obj/src/tools/gt_seqtranslate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_seqmutate.c -o obj/src/tools/gt_seqmutate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqmutate.o cc -c src/tools/gt_sain.c -o obj/src/tools/gt_sain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sain.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqlensort.c -o obj/src/tools/gt_seqlensort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqlensort.o cc -c src/tools/gt_sequniq.c -o obj/src/tools/gt_sequniq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqfilter.c -o obj/src/tools/gt_seqfilter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqfilter.o cc -c src/tools/gt_sfxmap.c -o obj/src/tools/gt_sfxmap.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_show_seedext.c -o obj/src/tools/gt_show_seedext.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_shredder.c -o obj/src/tools/gt_shredder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_shulen.c -o obj/src/tools/gt_shulen.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_seqtransform.c -o obj/src/tools/gt_seqtransform.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqtransform.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_simreads.c -o obj/src/tools/gt_simreads.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_repfind.c -o obj/src/tools/gt_repfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_repfind.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_skproto.c -o obj/src/tools/gt_skproto.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_seqtranslate.c -o obj/src/tools/gt_seqtranslate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqtranslate.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_snpper.c -o obj/src/tools/gt_snpper.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_sortbench.c -o obj/src/tools/gt_sortbench.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_sequniq.c -o obj/src/tools/gt_sequniq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sequniq.o cc -c src/tools/gt_seqorder.c -o obj/src/tools/gt_seqorder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqorder.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqstat.c -o obj/src/tools/gt_seqstat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqstat.o cc -c src/tools/gt_speck.c -o obj/src/tools/gt_speck.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_shredder.c -o obj/src/tools/gt_shredder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_shredder.o cc -c src/tools/gt_seed_extend.c -o obj/src/tools/gt_seed_extend.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seed_extend.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_splicesiteinfo.c -o obj/src/tools/gt_splicesiteinfo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_shulen.c -o obj/src/tools/gt_shulen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_shulen.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_splitfasta.c -o obj/src/tools/gt_splitfasta.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_stat.c -o obj/src/tools/gt_stat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_suffixerator.c -o obj/src/tools/gt_suffixerator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_seqcorrect.c -o obj/src/tools/gt_seqcorrect.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqcorrect.o cc -c src/tools/gt_show_seedext.c -o obj/src/tools/gt_show_seedext.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_show_seedext.o test -d obj/src/tools || mkdir -p obj/src/tools test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_tagerator.c -o obj/src/tools/gt_tagerator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_tallymer.c -o obj/src/tools/gt_tallymer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_snpper.c -o obj/src/tools/gt_snpper.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_snpper.o cc -c src/tools/gt_template.c -o obj/src/tools/gt_template.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_tir.c -o obj/src/tools/gt_tir.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_splicesiteinfo.c -o obj/src/tools/gt_splicesiteinfo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_splicesiteinfo.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_suffixerator.c -o obj/src/tools/gt_suffixerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_suffixerator.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_trieins.c -o obj/src/tools/gt_trieins.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_stat.c -o obj/src/tools/gt_stat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_stat.o cc -c src/tools/gt_skproto.c -o obj/src/tools/gt_skproto.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_skproto.o cc -c src/tools/gt_uniq.c -o obj/src/tools/gt_uniq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_wtree.c -o obj/src/tools/gt_wtree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_wtree_bench.c -o obj/src/tools/gt_wtree_bench.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_speck.c -o obj/src/tools/gt_speck.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_speck.o cc -c src/tools/gt_template.c -o obj/src/tools/gt_template.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_template.o test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/tools/gt_tagerator.c -o obj/src/tools/gt_tagerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_tagerator.o cc -c src/tools/gt_simreads.c -o obj/src/tools/gt_simreads.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_simreads.o cc -c src/tools/gt_trieins.c -o obj/src/tools/gt_trieins.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_trieins.o cc -c src/examples/custom_stream.c -o obj/src/examples/custom_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/gff3sort.c -o obj/src/examples/gff3sort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_splitfasta.c -o obj/src/tools/gt_splitfasta.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_splitfasta.o cc -c src/tools/gt_uniq.c -o obj/src/tools/gt_uniq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_uniq.o test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/gff3validator.c -o obj/src/examples/gff3validator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/noop.c -o obj/src/examples/noop.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/tools/gt_wtree.c -o obj/src/tools/gt_wtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_wtree.o cc -c src/examples/sketch_constructed.c -o obj/src/examples/sketch_constructed.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/sketch_parsed_with_ctrack.c -o obj/src/examples/sketch_parsed_with_ctrack.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_tir.c -o obj/src/tools/gt_tir.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_tir.o test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/sketch_parsed_with_ordering.c -o obj/src/examples/sketch_parsed_with_ordering.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/examples/gff3sort.c -o obj/src/examples/gff3sort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/gff3sort.o test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/sketch_parsed.c -o obj/src/examples/sketch_parsed.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/examples/custom_stream.c -o obj/src/examples/custom_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/custom_stream.o test -d lib || mkdir -p lib cc -c src/examples/gff3validator.c -o obj/src/examples/gff3validator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/gff3validator.o cc -c src/examples/noop.c -o obj/src/examples/noop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/noop.o ar r lib/libgenometools.a obj/src/core/alphabet.o obj/src/core/array.o obj/src/core/array2dim.o obj/src/core/array2dim_sparse.o obj/src/core/array3dim.o obj/src/core/basename.o obj/src/core/bioseq.o obj/src/core/bioseq_col.o obj/src/core/bioseq_iterator.o obj/src/core/bitbuffer.o obj/src/core/bitpackstringop.o obj/src/core/bitpackstringop16.o obj/src/core/bitpackstringop32.o obj/src/core/bitpackstringop64.o obj/src/core/bitpackstringop8.o obj/src/core/bittab.o obj/src/core/bool_matrix.o obj/src/core/bsearch.o obj/src/core/byte_popcount.o obj/src/core/byte_select.o obj/src/core/checkbitpackarray.o obj/src/core/checkbitpackstring-int.o obj/src/core/checkbitpackstring.o obj/src/core/checkbitpackstring16.o obj/src/core/checkbitpackstring32.o obj/src/core/checkbitpackstring64.o obj/src/core/checkbitpackstring8.o obj/src/core/class_alloc.o obj/src/core/class_alloc_lock.o obj/src/core/codon_iterator.o obj/src/core/codon_iterator_encseq.o obj/src/core/codon_iterator_simple.o obj/src/core/colorspace.o obj/src/core/combinatorics.o obj/src/core/compact_ulong_store.o obj/src/core/compat.o obj/src/core/complement.o obj/src/core/countingsort.o obj/src/core/cstr.o obj/src/core/cstr_array.o obj/src/core/cstr_table.o obj/src/core/csvline_reader.o obj/src/core/desc_buffer.o obj/src/core/disc_distri.o obj/src/core/dlist.o obj/src/core/dual-pivot-qsort.o obj/src/core/dyn_bittab.o obj/src/core/dynalloc.o obj/src/core/eansi.o obj/src/core/ebzlib.o obj/src/core/encseq.o obj/src/core/encseq_access_type.o obj/src/core/encseq_col.o obj/src/core/encseq_metadata.o obj/src/core/encseq_options.o obj/src/core/encseq_ptr.o obj/src/core/endianess.o obj/src/core/error.o obj/src/core/example.o obj/src/core/example_a.o obj/src/core/example_b.o obj/src/core/ezlib.o obj/src/core/fa.o obj/src/core/fasta.o obj/src/core/fasta_reader.o obj/src/core/fasta_reader_fsm.o obj/src/core/fasta_reader_rec.o obj/src/core/fasta_reader_seqit.o obj/src/core/fastq.o obj/src/core/file.o obj/src/core/fileutils.o obj/src/core/gc_content.o obj/src/core/grep.o obj/src/core/gtdatapath.o obj/src/core/hashmap.o obj/src/core/hashtable.o obj/src/core/init.o obj/src/core/interval_tree.o obj/src/core/io.o obj/src/core/log.o obj/src/core/logger.o obj/src/core/ma.o obj/src/core/mapspec.o obj/src/core/mathsupport.o obj/src/core/md5_encoder.o obj/src/core/md5_fingerprint.o obj/src/core/md5_seqid.o obj/src/core/md5_tab.o obj/src/core/msort.o obj/src/core/multithread.o obj/src/core/option.o obj/src/core/orf.o obj/src/core/output_file.o obj/src/core/parseutils.o obj/src/core/password_entry.o obj/src/core/phase.o obj/src/core/process.o obj/src/core/progressbar.o obj/src/core/qsort-ulong.o obj/src/core/qsort_r.o obj/src/core/quality.o obj/src/core/queue.o obj/src/core/radix_sort.o obj/src/core/range.o obj/src/core/readmode.o obj/src/core/safearith.o obj/src/core/score_function.o obj/src/core/score_matrix.o obj/src/core/seq.o obj/src/core/seq_col.o obj/src/core/seq_info_cache.o obj/src/core/seq_iterator.o obj/src/core/seq_iterator_fastq.o obj/src/core/seq_iterator_sequence_buffer.o obj/src/core/sequence_buffer.o obj/src/core/sequence_buffer_dust.o obj/src/core/sequence_buffer_embl.o obj/src/core/sequence_buffer_fasta.o obj/src/core/sequence_buffer_fastq.o obj/src/core/sequence_buffer_gb.o obj/src/core/sequence_buffer_plain.o obj/src/core/showtime.o obj/src/core/sig.o obj/src/core/spacepeak.o obj/src/core/splitter.o obj/src/core/str.o obj/src/core/str_array.o obj/src/core/str_cache.o obj/src/core/strand.o obj/src/core/strcmp.o obj/src/core/string_distri.o obj/src/core/symbol.o obj/src/core/thread.o obj/src/core/timer.o obj/src/core/tokenizer.o obj/src/core/tool.o obj/src/core/tool_iterator.o obj/src/core/toolbox.o obj/src/core/tooldriver.o obj/src/core/trans_table.o obj/src/core/translator.o obj/src/core/unit_testing.o obj/src/core/version.o obj/src/core/versionfunc.o obj/src/core/warning.o obj/src/core/xansi.o obj/src/core/xbsd.o obj/src/core/xbzlib.o obj/src/core/xposix.o obj/src/core/xzlib.o obj/src/core/yarandom.o obj/src/extended/add_ids_stream.o obj/src/extended/add_ids_visitor.o obj/src/extended/add_introns_stream.o obj/src/extended/affinealign.o obj/src/extended/aligned_segment.o obj/src/extended/aligned_segments_pile.o obj/src/extended/alignment.o obj/src/extended/anno_db_gfflike.o obj/src/extended/anno_db_schema.o obj/src/extended/array_in_stream.o obj/src/extended/array_out_stream.o obj/src/extended/assembly_stats_calculator.o obj/src/extended/bed_in_stream.o obj/src/extended/bed_parser.o obj/src/extended/bitinstream.o obj/src/extended/bitoutstream.o obj/src/extended/blast_process_call.o obj/src/extended/buffer_stream.o obj/src/extended/cds_check_stream.o obj/src/extended/cds_check_visitor.o obj/src/extended/cds_stream.o obj/src/extended/cds_visitor.o obj/src/extended/chain.o obj/src/extended/check_boundaries_visitor.o obj/src/extended/chseqids_stream.o obj/src/extended/clustered_set.o obj/src/extended/clustered_set_uf.o obj/src/extended/coin_hmm.o obj/src/extended/collect_ids_visitor.o obj/src/extended/comment_node.o obj/src/extended/compressed_bitsequence.o obj/src/extended/condenseq.o obj/src/extended/condenseq_creator.o obj/src/extended/condenseq_search_arguments.o obj/src/extended/consensus_sa.o obj/src/extended/csa_gene.o obj/src/extended/csa_splice_form.o obj/src/extended/csa_stream.o obj/src/extended/csa_variable_strands.o obj/src/extended/csa_visitor.o obj/src/extended/cstr_iterator.o obj/src/extended/diagonalbandalign.o obj/src/extended/diagonalbandalign_affinegapcost.o obj/src/extended/dice_hmm.o obj/src/extended/dot_out_stream.o obj/src/extended/dot_visitor.o obj/src/extended/dup_feature_stream.o obj/src/extended/dup_feature_visitor.o obj/src/extended/editscript.o obj/src/extended/elias_gamma.o obj/src/extended/encdesc.o obj/src/extended/encdesc_header_io.o obj/src/extended/eof_node.o obj/src/extended/evaluator.o obj/src/extended/extract_feature_sequence.o obj/src/extended/extract_feature_stream.o obj/src/extended/extract_feature_visitor.o obj/src/extended/fasta_header_iterator.o obj/src/extended/feature_in_stream.o obj/src/extended/feature_index.o obj/src/extended/feature_index_memory.o obj/src/extended/feature_info.o obj/src/extended/feature_node.o obj/src/extended/feature_node_iterator.o obj/src/extended/feature_node_observer.o obj/src/extended/feature_out_stream.o obj/src/extended/feature_stream.o obj/src/extended/feature_visitor.o obj/src/extended/gap_str.o obj/src/extended/genome_node.o obj/src/extended/gff3_escaping.o obj/src/extended/gff3_in_stream.o obj/src/extended/gff3_in_stream_plain.o obj/src/extended/gff3_linesorted_out_stream.o obj/src/extended/gff3_numsorted_out_stream.o obj/src/extended/gff3_out_stream.o obj/src/extended/gff3_output.o obj/src/extended/gff3_parser.o obj/src/extended/gff3_visitor.o obj/src/extended/globalchaining.o obj/src/extended/golomb.o obj/src/extended/gtdatahelp.o obj/src/extended/gtf_in_stream.o obj/src/extended/gtf_out_stream.o obj/src/extended/gtf_parser.o obj/src/extended/gtf_visitor.o obj/src/extended/hcr.o obj/src/extended/hmm.o obj/src/extended/hpol_processor.o obj/src/extended/huffcode.o obj/src/extended/id_to_md5_stream.o obj/src/extended/id_to_md5_visitor.o obj/src/extended/inter_feature_stream.o obj/src/extended/inter_feature_visitor.o obj/src/extended/intset.o obj/src/extended/intset_16.o obj/src/extended/intset_32.o obj/src/extended/intset_8.o obj/src/extended/intset_combined.o obj/src/extended/io_function_pointers.o obj/src/extended/kmer_database.o obj/src/extended/linearalign.o obj/src/extended/linearalign_affinegapcost.o obj/src/extended/linspace_management.o obj/src/extended/load_stream.o obj/src/extended/luahelper.o obj/src/extended/luaserialize.o obj/src/extended/mapping.o obj/src/extended/match.o obj/src/extended/match_blast.o obj/src/extended/match_iterator.o obj/src/extended/match_iterator_blast.o obj/src/extended/match_iterator_last.o obj/src/extended/match_iterator_open.o obj/src/extended/match_iterator_sw.o obj/src/extended/match_last.o obj/src/extended/match_open.o obj/src/extended/match_sw.o obj/src/extended/match_visitor.o obj/src/extended/maxcoordvalue.o obj/src/extended/md5_to_id_stream.o obj/src/extended/md5_to_id_visitor.o obj/src/extended/md5set.o obj/src/extended/merge_feature_stream.o obj/src/extended/merge_feature_visitor.o obj/src/extended/merge_stream.o obj/src/extended/meta_node.o obj/src/extended/multi_sanitizer_visitor.o obj/src/extended/multieoplist.o obj/src/extended/mutate.o obj/src/extended/node_stream.o obj/src/extended/node_visitor.o obj/src/extended/obo_parse_tree.o obj/src/extended/obo_stanza.o obj/src/extended/orf_finder_stream.o obj/src/extended/orf_finder_visitor.o obj/src/extended/orf_iterator.o obj/src/extended/orphanage.o obj/src/extended/permute_words.o obj/src/extended/popcount_tab.o obj/src/extended/priority_queue.o obj/src/extended/ranked_list.o obj/src/extended/rbtree.o obj/src/extended/rcr.o obj/src/extended/rdb.o obj/src/extended/rdb_sqlite.o obj/src/extended/rdb_visitor.o obj/src/extended/reconstructalignment.o obj/src/extended/region_mapping.o obj/src/extended/region_node.o obj/src/extended/region_node_builder.o obj/src/extended/regioncov_visitor.o obj/src/extended/regular_seqid.o obj/src/extended/reverse.o obj/src/extended/rmq.o obj/src/extended/safe_popen.o obj/src/extended/sam_alignment.o obj/src/extended/sam_query_name_iterator.o obj/src/extended/samfile_encseq_mapping.o obj/src/extended/samfile_iterator.o obj/src/extended/sampling.o obj/src/extended/scorehandler.o obj/src/extended/script_filter.o obj/src/extended/script_wrapper_stream.o obj/src/extended/script_wrapper_visitor.o obj/src/extended/select_stream.o obj/src/extended/select_visitor.o obj/src/extended/seqid2file.o obj/src/extended/seqid2seqnum_mapping.o obj/src/extended/seqpos_classifier.o obj/src/extended/sequence_node.o obj/src/extended/sequence_node_add_stream.o obj/src/extended/sequence_node_out_stream.o obj/src/extended/sequence_node_out_visitor.o obj/src/extended/set_source_visitor.o obj/src/extended/shredder.o obj/src/extended/snp_annotator_stream.o obj/src/extended/snp_annotator_visitor.o obj/src/extended/sort_stream.o obj/src/extended/spec_results.o obj/src/extended/spec_visitor.o obj/src/extended/splice_site_info_stream.o obj/src/extended/splice_site_info_visitor.o obj/src/extended/splicedseq.o obj/src/extended/squarealign.o obj/src/extended/sspliced_alignment.o obj/src/extended/sspliced_alignment_parsing.o obj/src/extended/stat_stream.o obj/src/extended/stat_visitor.o obj/src/extended/stream_evaluator.o obj/src/extended/string_matching.o obj/src/extended/swalign.o obj/src/extended/tag_value_map.o obj/src/extended/targetbest_select_stream.o obj/src/extended/tidy_region_node_stream.o obj/src/extended/tidy_region_node_visitor.o obj/src/extended/tir_stream.o obj/src/extended/transcript_bittabs.o obj/src/extended/transcript_counts.o obj/src/extended/transcript_evaluators.o obj/src/extended/transcript_exons.o obj/src/extended/transcript_used_exons.o obj/src/extended/type_checker.o obj/src/extended/type_checker_builtin.o obj/src/extended/type_checker_obo.o obj/src/extended/type_graph.o obj/src/extended/type_node.o obj/src/extended/typecheck_info.o obj/src/extended/uint64hashtable.o obj/src/extended/union_find.o obj/src/extended/uniq_stream.o obj/src/extended/visitor_stream.o obj/src/extended/wtree.o obj/src/extended/wtree_encseq.o obj/src/extended/xrf_abbr_entry.o obj/src/extended/xrf_abbr_parse_tree.o obj/src/extended/xrf_checker.o obj/src/extended/xrfcheck_info.o obj/src/gtlua/alphabet_lua.o obj/src/gtlua/annotationsketch_lua.o obj/src/gtlua/bittab_lua.o obj/src/gtlua/canvas_lua.o obj/src/gtlua/cds_stream_lua.o obj/src/gtlua/csa_stream_lua.o obj/src/gtlua/diagram_lua.o obj/src/gtlua/encseq_lua.o obj/src/gtlua/feature_index_lua.o obj/src/gtlua/feature_node_iterator_lua.o obj/src/gtlua/feature_stream_lua.o obj/src/gtlua/feature_visitor_lua.o obj/src/gtlua/genome_node_lua.o obj/src/gtlua/genome_stream_lua.o obj/src/gtlua/genome_visitor_lua.o obj/src/gtlua/gt_lua.o obj/src/gtlua/gtcore_lua.o obj/src/gtlua/gtext_lua.o obj/src/gtlua/image_info_lua.o obj/src/gtlua/layout_lua.o obj/src/gtlua/mathsupport_lua.o obj/src/gtlua/range_lua.o obj/src/gtlua/region_mapping_lua.o obj/src/gtlua/score_matrix_lua.o obj/src/gtlua/stream_evaluator_lua.o obj/src/gtlua/translate_lua.o obj/src/match/apmeoveridx.o obj/src/match/asqg_writer.o obj/src/match/bare-encseq.o obj/src/match/bcktab.o obj/src/match/cgr_spacedseed.o obj/src/match/chain2dim.o obj/src/match/chainofin.o obj/src/match/cutendpfx.o obj/src/match/dbs_spaced_seeds.o obj/src/match/diagband-struct.o obj/src/match/diagbandseed.o obj/src/match/dist-short.o obj/src/match/echoseq.o obj/src/match/eis-blockcomp-param.o obj/src/match/eis-blockcomp.o obj/src/match/eis-bwtseq-construct.o obj/src/match/eis-bwtseq-context-param.o obj/src/match/eis-bwtseq-context.o obj/src/match/eis-bwtseq-extinfo.o obj/src/match/eis-bwtseq-param.o obj/src/match/eis-bwtseq-sass.o obj/src/match/eis-bwtseq.o obj/src/match/eis-encidxseq-construct.o obj/src/match/eis-encidxseq-param.o obj/src/match/eis-encidxseq.o obj/src/match/eis-mrangealphabet.o obj/src/match/eis-sa-common.o obj/src/match/eis-seqblocktranslate.o obj/src/match/eis-seqranges.o obj/src/match/eis-sequencemultiread.o obj/src/match/eis-specialsrank.o obj/src/match/eis-suffixarray-interface.o obj/src/match/eis-suffixerator-interface.o obj/src/match/eis-voiditf.o obj/src/match/encseq2offset.o obj/src/match/enum-patt.o obj/src/match/esa-bottomup.o obj/src/match/esa-dfs.o obj/src/match/esa-lcpintervals.o obj/src/match/esa-map.o obj/src/match/esa-maxpairs.o obj/src/match/esa-merge.o obj/src/match/esa-minunique.o obj/src/match/esa-mmsearch.o obj/src/match/esa-scanprj.o obj/src/match/esa-seqread.o obj/src/match/esa-shulen.o obj/src/match/esa-splititv-simple.o obj/src/match/esa-splititv.o obj/src/match/esa-spmitvs.o obj/src/match/esa-spmsk.o obj/src/match/esa_lcpintervals_visitor.o obj/src/match/esa_spmitvs_visitor.o obj/src/match/esa_visitor.o obj/src/match/firstcodes-accum.o obj/src/match/firstcodes-cache.o obj/src/match/firstcodes-insert.o obj/src/match/firstcodes-psbuf.o obj/src/match/firstcodes-scan.o obj/src/match/firstcodes-spacelog.o obj/src/match/firstcodes-tab.o obj/src/match/firstcodes.o obj/src/match/fmi-fwduni.o obj/src/match/fmi-keyval.o obj/src/match/fmi-locate.o obj/src/match/fmi-map.o obj/src/match/fmi-mapspec.o obj/src/match/fmi-mkindex.o obj/src/match/fmi-save.o obj/src/match/fmi-sufbwtstream.o obj/src/match/ft-eoplist.o obj/src/match/ft-front-generation.o obj/src/match/ft-front-prune.o obj/src/match/ft-polish.o obj/src/match/ft-trimstat.o obj/src/match/gfa_writer.o obj/src/match/giextract.o obj/src/match/greedyedist.o obj/src/match/greedyfwdmat.o obj/src/match/hashfirstcodes.o obj/src/match/hlk-version.o obj/src/match/hplstore.o obj/src/match/idx-limdfs.o obj/src/match/idxlocali.o obj/src/match/idxlocalidp.o obj/src/match/idxlocalisw.o obj/src/match/index_options.o obj/src/match/initbasepower.o obj/src/match/initeqsvec.o obj/src/match/iter-window.o obj/src/match/karlin_altschul_stat.o obj/src/match/kmer2string.o obj/src/match/lua_tools.o obj/src/match/marksubstring.o obj/src/match/merger-trie.o obj/src/match/mssufpat.o obj/src/match/myersapm.o obj/src/match/nullcols.o obj/src/match/optionargmode.o obj/src/match/pck-count-nodes.o obj/src/match/pckbucket.o obj/src/match/pckdfs.o obj/src/match/prsqualint.o obj/src/match/pssm.o obj/src/match/querymatch-align.o obj/src/match/querymatch-display.o obj/src/match/querymatch.o obj/src/match/radixsort_str.o obj/src/match/randomcodes-correct.o obj/src/match/randomcodes-find-seldom.o obj/src/match/randomcodes-hpcorrect.o obj/src/match/randomcodes-insert.o obj/src/match/randomcodes-sfx-partssuf.o obj/src/match/randomcodes-tab.o obj/src/match/randomcodes.o obj/src/match/rdj-cntlist.o obj/src/match/rdj-contfind-bottomup.o obj/src/match/rdj-contfinder.o obj/src/match/rdj-contigpaths.o obj/src/match/rdj-contigs-graph.o obj/src/match/rdj-contigs-writer.o obj/src/match/rdj-errfind.o obj/src/match/rdj-ovlfind-bf.o obj/src/match/rdj-ovlfind-dp.o obj/src/match/rdj-ovlfind-gusfield.o obj/src/match/rdj-ovlfind-kmp.o obj/src/match/rdj-pairwise.o obj/src/match/rdj-spmfind.o obj/src/match/rdj-spmlist.o obj/src/match/rdj-spmproc.o obj/src/match/rdj-strgraph.o obj/src/match/rdj-twobitenc-editor.o obj/src/match/rdj-version.o obj/src/match/reads2twobit.o obj/src/match/reads_libraries_table.o obj/src/match/rectangle-store.o obj/src/match/revcompl.o obj/src/match/seed-extend-iter.o obj/src/match/seed-extend.o obj/src/match/seed_extend_parts.o obj/src/match/seqabstract.o obj/src/match/seqnumrelpos.o obj/src/match/sfx-apfxlen.o obj/src/match/sfx-bentsedg.o obj/src/match/sfx-bltrie.o obj/src/match/sfx-copysort.o obj/src/match/sfx-diffcov.o obj/src/match/sfx-enumcodes.o obj/src/match/sfx-lcpvalues.o obj/src/match/sfx-linlcp.o obj/src/match/sfx-lwcheck.o obj/src/match/sfx-mappedstr.o obj/src/match/sfx-maprange.o obj/src/match/sfx-opt.o obj/src/match/sfx-outprj.o obj/src/match/sfx-partssuf.o obj/src/match/sfx-radixsort.o obj/src/match/sfx-run.o obj/src/match/sfx-sain.o obj/src/match/sfx-shortreadsort.o obj/src/match/sfx-suffixer.o obj/src/match/sfx-suffixgetset.o obj/src/match/sfx-suftaborder.o obj/src/match/shu-dfs.o obj/src/match/shu-divergence.o obj/src/match/shu-encseq-gc.o obj/src/match/shu-genomediff.o obj/src/match/shu_unitfile.o obj/src/match/spaced-seeds.o obj/src/match/specialrank.o obj/src/match/spmsuftab.o obj/src/match/squarededist.o obj/src/match/substriter.o obj/src/match/tagerator.o obj/src/match/test-mappedstr.o obj/src/match/test-maxpairs.o obj/src/match/test-mergeesa.o obj/src/match/test-mtrieins.o obj/src/match/test-pairwise.o obj/src/match/turnwheels.o obj/src/match/twobits2kmers.o obj/src/match/tyr-map.o obj/src/match/tyr-mersplit.o obj/src/match/tyr-mkindex.o obj/src/match/tyr-occratio.o obj/src/match/tyr-search.o obj/src/match/xdrop.o obj/src/ltr/gt_ltrclustering.o obj/src/ltr/gt_ltrdigest.o obj/src/ltr/gt_ltrharvest.o obj/src/ltr/ltr_classify_stream.o obj/src/ltr/ltr_cluster_prepare_seq_visitor.o obj/src/ltr/ltr_cluster_stream.o obj/src/ltr/ltr_four_char_motif.o obj/src/ltr/ltr_input_check_visitor.o obj/src/ltr/ltr_orf_annotator_stream.o obj/src/ltr/ltr_refseq_match_stream.o obj/src/ltr/ltrdigest_file_out_stream.o obj/src/ltr/ltrdigest_pbs_visitor.o obj/src/ltr/ltrdigest_pdom_visitor.o obj/src/ltr/ltrdigest_ppt_visitor.o obj/src/ltr/ltrdigest_strand_assign_visitor.o obj/src/ltr/ltrharvest_fasta_out_stream.o obj/src/ltr/ltrharvest_fasta_out_visitor.o obj/src/ltr/ltrharvest_stream.o obj/src/ltr/ltrharvest_tabout_stream.o obj/src/ltr/ltrharvest_tabout_visitor.o obj/src/ltr/pdom_model_set.o obj/src/mgth/metagenomethreader.o obj/src/mgth/mg_codon.o obj/src/mgth/mg_combinedscore.o obj/src/mgth/mg_compute_gene_prediction.o obj/src/mgth/mg_computepath.o obj/src/mgth/mg_outputwriter.o obj/src/mgth/mg_reverse.o obj/src/mgth/mg_xmlparser.o obj/src/annotationsketch/block.o obj/src/annotationsketch/canvas.o obj/src/annotationsketch/canvas_cairo.o obj/src/annotationsketch/canvas_cairo_context.o obj/src/annotationsketch/canvas_cairo_file.o obj/src/annotationsketch/color.o obj/src/annotationsketch/coords.o obj/src/annotationsketch/custom_track.o obj/src/annotationsketch/custom_track_example.o obj/src/annotationsketch/custom_track_gc_content.o obj/src/annotationsketch/custom_track_script_wrapper.o obj/src/annotationsketch/diagram.o obj/src/annotationsketch/drawing_range.o obj/src/annotationsketch/element.o obj/src/annotationsketch/graphics.o obj/src/annotationsketch/graphics_cairo.o obj/src/annotationsketch/gt_sketch.o obj/src/annotationsketch/gt_sketch_page.o obj/src/annotationsketch/image_info.o obj/src/annotationsketch/layout.o obj/src/annotationsketch/line.o obj/src/annotationsketch/line_breaker.o obj/src/annotationsketch/line_breaker_bases.o obj/src/annotationsketch/line_breaker_captions.o obj/src/annotationsketch/luastyle.o obj/src/annotationsketch/rec_map.o obj/src/annotationsketch/style.o obj/src/annotationsketch/text_width_calculator.o obj/src/annotationsketch/text_width_calculator_cairo.o obj/src/annotationsketch/track.o ar: creating lib/libgenometools.a cc -c src/tools/gt_wtree_bench.c -o obj/src/tools/gt_wtree_bench.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_wtree_bench.o test -d lib || mkdir -p lib cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Wl,--version-script=obj/public_symbols.lst \ -Llib -shared \ -Wl,-soname,libgenometools.so.0 obj/src/core/alphabet.o obj/src/core/array.o obj/src/core/array2dim.o obj/src/core/array2dim_sparse.o obj/src/core/array3dim.o obj/src/core/basename.o obj/src/core/bioseq.o obj/src/core/bioseq_col.o obj/src/core/bioseq_iterator.o obj/src/core/bitbuffer.o obj/src/core/bitpackstringop.o obj/src/core/bitpackstringop16.o obj/src/core/bitpackstringop32.o obj/src/core/bitpackstringop64.o obj/src/core/bitpackstringop8.o obj/src/core/bittab.o obj/src/core/bool_matrix.o obj/src/core/bsearch.o obj/src/core/byte_popcount.o obj/src/core/byte_select.o obj/src/core/checkbitpackarray.o obj/src/core/checkbitpackstring-int.o obj/src/core/checkbitpackstring.o obj/src/core/checkbitpackstring16.o obj/src/core/checkbitpackstring32.o obj/src/core/checkbitpackstring64.o obj/src/core/checkbitpackstring8.o obj/src/core/class_alloc.o obj/src/core/class_alloc_lock.o obj/src/core/codon_iterator.o obj/src/core/codon_iterator_encseq.o obj/src/core/codon_iterator_simple.o obj/src/core/colorspace.o obj/src/core/combinatorics.o obj/src/core/compact_ulong_store.o obj/src/core/compat.o obj/src/core/complement.o obj/src/core/countingsort.o obj/src/core/cstr.o obj/src/core/cstr_array.o obj/src/core/cstr_table.o obj/src/core/csvline_reader.o obj/src/core/desc_buffer.o obj/src/core/disc_distri.o obj/src/core/dlist.o obj/src/core/dual-pivot-qsort.o obj/src/core/dyn_bittab.o obj/src/core/dynalloc.o obj/src/core/eansi.o obj/src/core/ebzlib.o obj/src/core/encseq.o obj/src/core/encseq_access_type.o obj/src/core/encseq_col.o obj/src/core/encseq_metadata.o obj/src/core/encseq_options.o obj/src/core/encseq_ptr.o obj/src/core/endianess.o obj/src/core/error.o obj/src/core/example.o obj/src/core/example_a.o obj/src/core/example_b.o obj/src/core/ezlib.o obj/src/core/fa.o obj/src/core/fasta.o obj/src/core/fasta_reader.o obj/src/core/fasta_reader_fsm.o obj/src/core/fasta_reader_rec.o obj/src/core/fasta_reader_seqit.o obj/src/core/fastq.o obj/src/core/file.o obj/src/core/fileutils.o obj/src/core/gc_content.o obj/src/core/grep.o obj/src/core/gtdatapath.o obj/src/core/hashmap.o obj/src/core/hashtable.o obj/src/core/init.o obj/src/core/interval_tree.o obj/src/core/io.o obj/src/core/log.o obj/src/core/logger.o obj/src/core/ma.o obj/src/core/mapspec.o obj/src/core/mathsupport.o obj/src/core/md5_encoder.o obj/src/core/md5_fingerprint.o obj/src/core/md5_seqid.o obj/src/core/md5_tab.o obj/src/core/msort.o obj/src/core/multithread.o obj/src/core/option.o obj/src/core/orf.o obj/src/core/output_file.o obj/src/core/parseutils.o obj/src/core/password_entry.o obj/src/core/phase.o obj/src/core/process.o obj/src/core/progressbar.o obj/src/core/qsort-ulong.o obj/src/core/qsort_r.o obj/src/core/quality.o obj/src/core/queue.o obj/src/core/radix_sort.o obj/src/core/range.o obj/src/core/readmode.o obj/src/core/safearith.o obj/src/core/score_function.o obj/src/core/score_matrix.o obj/src/core/seq.o obj/src/core/seq_col.o obj/src/core/seq_info_cache.o obj/src/core/seq_iterator.o obj/src/core/seq_iterator_fastq.o obj/src/core/seq_iterator_sequence_buffer.o obj/src/core/sequence_buffer.o obj/src/core/sequence_buffer_dust.o obj/src/core/sequence_buffer_embl.o obj/src/core/sequence_buffer_fasta.o obj/src/core/sequence_buffer_fastq.o obj/src/core/sequence_buffer_gb.o obj/src/core/sequence_buffer_plain.o obj/src/core/showtime.o obj/src/core/sig.o obj/src/core/spacepeak.o obj/src/core/splitter.o obj/src/core/str.o obj/src/core/str_array.o obj/src/core/str_cache.o obj/src/core/strand.o obj/src/core/strcmp.o obj/src/core/string_distri.o obj/src/core/symbol.o obj/src/core/thread.o obj/src/core/timer.o obj/src/core/tokenizer.o obj/src/core/tool.o obj/src/core/tool_iterator.o obj/src/core/toolbox.o obj/src/core/tooldriver.o obj/src/core/trans_table.o obj/src/core/translator.o obj/src/core/unit_testing.o obj/src/core/version.o obj/src/core/versionfunc.o obj/src/core/warning.o obj/src/core/xansi.o obj/src/core/xbsd.o obj/src/core/xbzlib.o obj/src/core/xposix.o obj/src/core/xzlib.o obj/src/core/yarandom.o obj/src/extended/add_ids_stream.o obj/src/extended/add_ids_visitor.o obj/src/extended/add_introns_stream.o obj/src/extended/affinealign.o obj/src/extended/aligned_segment.o obj/src/extended/aligned_segments_pile.o obj/src/extended/alignment.o obj/src/extended/anno_db_gfflike.o obj/src/extended/anno_db_schema.o obj/src/extended/array_in_stream.o obj/src/extended/array_out_stream.o obj/src/extended/assembly_stats_calculator.o obj/src/extended/bed_in_stream.o obj/src/extended/bed_parser.o obj/src/extended/bitinstream.o obj/src/extended/bitoutstream.o obj/src/extended/blast_process_call.o obj/src/extended/buffer_stream.o obj/src/extended/cds_check_stream.o obj/src/extended/cds_check_visitor.o obj/src/extended/cds_stream.o obj/src/extended/cds_visitor.o obj/src/extended/chain.o obj/src/extended/check_boundaries_visitor.o obj/src/extended/chseqids_stream.o obj/src/extended/clustered_set.o obj/src/extended/clustered_set_uf.o obj/src/extended/coin_hmm.o obj/src/extended/collect_ids_visitor.o obj/src/extended/comment_node.o obj/src/extended/compressed_bitsequence.o obj/src/extended/condenseq.o obj/src/extended/condenseq_creator.o obj/src/extended/condenseq_search_arguments.o obj/src/extended/consensus_sa.o obj/src/extended/csa_gene.o obj/src/extended/csa_splice_form.o obj/src/extended/csa_stream.o obj/src/extended/csa_variable_strands.o obj/src/extended/csa_visitor.o obj/src/extended/cstr_iterator.o obj/src/extended/diagonalbandalign.o obj/src/extended/diagonalbandalign_affinegapcost.o obj/src/extended/dice_hmm.o obj/src/extended/dot_out_stream.o obj/src/extended/dot_visitor.o obj/src/extended/dup_feature_stream.o obj/src/extended/dup_feature_visitor.o obj/src/extended/editscript.o obj/src/extended/elias_gamma.o obj/src/extended/encdesc.o obj/src/extended/encdesc_header_io.o obj/src/extended/eof_node.o obj/src/extended/evaluator.o obj/src/extended/extract_feature_sequence.o obj/src/extended/extract_feature_stream.o obj/src/extended/extract_feature_visitor.o obj/src/extended/fasta_header_iterator.o obj/src/extended/feature_in_stream.o obj/src/extended/feature_index.o obj/src/extended/feature_index_memory.o obj/src/extended/feature_info.o obj/src/extended/feature_node.o obj/src/extended/feature_node_iterator.o obj/src/extended/feature_node_observer.o obj/src/extended/feature_out_stream.o obj/src/extended/feature_stream.o obj/src/extended/feature_visitor.o obj/src/extended/gap_str.o obj/src/extended/genome_node.o obj/src/extended/gff3_escaping.o obj/src/extended/gff3_in_stream.o obj/src/extended/gff3_in_stream_plain.o obj/src/extended/gff3_linesorted_out_stream.o obj/src/extended/gff3_numsorted_out_stream.o obj/src/extended/gff3_out_stream.o obj/src/extended/gff3_output.o obj/src/extended/gff3_parser.o obj/src/extended/gff3_visitor.o obj/src/extended/globalchaining.o obj/src/extended/golomb.o obj/src/extended/gtdatahelp.o obj/src/extended/gtf_in_stream.o obj/src/extended/gtf_out_stream.o obj/src/extended/gtf_parser.o obj/src/extended/gtf_visitor.o obj/src/extended/hcr.o obj/src/extended/hmm.o obj/src/extended/hpol_processor.o obj/src/extended/huffcode.o obj/src/extended/id_to_md5_stream.o obj/src/extended/id_to_md5_visitor.o obj/src/extended/inter_feature_stream.o obj/src/extended/inter_feature_visitor.o obj/src/extended/intset.o obj/src/extended/intset_16.o obj/src/extended/intset_32.o obj/src/extended/intset_8.o obj/src/extended/intset_combined.o obj/src/extended/io_function_pointers.o obj/src/extended/kmer_database.o obj/src/extended/linearalign.o obj/src/extended/linearalign_affinegapcost.o obj/src/extended/linspace_management.o obj/src/extended/load_stream.o obj/src/extended/luahelper.o obj/src/extended/luaserialize.o obj/src/extended/mapping.o obj/src/extended/match.o obj/src/extended/match_blast.o obj/src/extended/match_iterator.o obj/src/extended/match_iterator_blast.o obj/src/extended/match_iterator_last.o obj/src/extended/match_iterator_open.o obj/src/extended/match_iterator_sw.o obj/src/extended/match_last.o obj/src/extended/match_open.o obj/src/extended/match_sw.o obj/src/extended/match_visitor.o obj/src/extended/maxcoordvalue.o obj/src/extended/md5_to_id_stream.o obj/src/extended/md5_to_id_visitor.o obj/src/extended/md5set.o obj/src/extended/merge_feature_stream.o obj/src/extended/merge_feature_visitor.o obj/src/extended/merge_stream.o obj/src/extended/meta_node.o obj/src/extended/multi_sanitizer_visitor.o obj/src/extended/multieoplist.o obj/src/extended/mutate.o obj/src/extended/node_stream.o obj/src/extended/node_visitor.o obj/src/extended/obo_parse_tree.o obj/src/extended/obo_stanza.o obj/src/extended/orf_finder_stream.o obj/src/extended/orf_finder_visitor.o obj/src/extended/orf_iterator.o obj/src/extended/orphanage.o obj/src/extended/permute_words.o obj/src/extended/popcount_tab.o obj/src/extended/priority_queue.o obj/src/extended/ranked_list.o obj/src/extended/rbtree.o obj/src/extended/rcr.o obj/src/extended/rdb.o obj/src/extended/rdb_sqlite.o obj/src/extended/rdb_visitor.o obj/src/extended/reconstructalignment.o obj/src/extended/region_mapping.o obj/src/extended/region_node.o obj/src/extended/region_node_builder.o obj/src/extended/regioncov_visitor.o obj/src/extended/regular_seqid.o obj/src/extended/reverse.o obj/src/extended/rmq.o obj/src/extended/safe_popen.o obj/src/extended/sam_alignment.o obj/src/extended/sam_query_name_iterator.o obj/src/extended/samfile_encseq_mapping.o obj/src/extended/samfile_iterator.o obj/src/extended/sampling.o obj/src/extended/scorehandler.o obj/src/extended/script_filter.o obj/src/extended/script_wrapper_stream.o obj/src/extended/script_wrapper_visitor.o obj/src/extended/select_stream.o obj/src/extended/select_visitor.o obj/src/extended/seqid2file.o obj/src/extended/seqid2seqnum_mapping.o obj/src/extended/seqpos_classifier.o obj/src/extended/sequence_node.o obj/src/extended/sequence_node_add_stream.o obj/src/extended/sequence_node_out_stream.o obj/src/extended/sequence_node_out_visitor.o obj/src/extended/set_source_visitor.o obj/src/extended/shredder.o obj/src/extended/snp_annotator_stream.o obj/src/extended/snp_annotator_visitor.o obj/src/extended/sort_stream.o obj/src/extended/spec_results.o obj/src/extended/spec_visitor.o obj/src/extended/splice_site_info_stream.o obj/src/extended/splice_site_info_visitor.o obj/src/extended/splicedseq.o obj/src/extended/squarealign.o obj/src/extended/sspliced_alignment.o obj/src/extended/sspliced_alignment_parsing.o obj/src/extended/stat_stream.o obj/src/extended/stat_visitor.o obj/src/extended/stream_evaluator.o obj/src/extended/string_matching.o obj/src/extended/swalign.o obj/src/extended/tag_value_map.o obj/src/extended/targetbest_select_stream.o obj/src/extended/tidy_region_node_stream.o obj/src/extended/tidy_region_node_visitor.o obj/src/extended/tir_stream.o obj/src/extended/transcript_bittabs.o obj/src/extended/transcript_counts.o obj/src/extended/transcript_evaluators.o obj/src/extended/transcript_exons.o obj/src/extended/transcript_used_exons.o obj/src/extended/type_checker.o obj/src/extended/type_checker_builtin.o obj/src/extended/type_checker_obo.o obj/src/extended/type_graph.o obj/src/extended/type_node.o obj/src/extended/typecheck_info.o obj/src/extended/uint64hashtable.o obj/src/extended/union_find.o obj/src/extended/uniq_stream.o obj/src/extended/visitor_stream.o obj/src/extended/wtree.o obj/src/extended/wtree_encseq.o obj/src/extended/xrf_abbr_entry.o obj/src/extended/xrf_abbr_parse_tree.o obj/src/extended/xrf_checker.o obj/src/extended/xrfcheck_info.o obj/src/gtlua/alphabet_lua.o obj/src/gtlua/annotationsketch_lua.o obj/src/gtlua/bittab_lua.o obj/src/gtlua/canvas_lua.o obj/src/gtlua/cds_stream_lua.o obj/src/gtlua/csa_stream_lua.o obj/src/gtlua/diagram_lua.o obj/src/gtlua/encseq_lua.o obj/src/gtlua/feature_index_lua.o obj/src/gtlua/feature_node_iterator_lua.o obj/src/gtlua/feature_stream_lua.o obj/src/gtlua/feature_visitor_lua.o obj/src/gtlua/genome_node_lua.o obj/src/gtlua/genome_stream_lua.o obj/src/gtlua/genome_visitor_lua.o obj/src/gtlua/gt_lua.o obj/src/gtlua/gtcore_lua.o obj/src/gtlua/gtext_lua.o obj/src/gtlua/image_info_lua.o obj/src/gtlua/layout_lua.o obj/src/gtlua/mathsupport_lua.o obj/src/gtlua/range_lua.o obj/src/gtlua/region_mapping_lua.o obj/src/gtlua/score_matrix_lua.o obj/src/gtlua/stream_evaluator_lua.o obj/src/gtlua/translate_lua.o obj/src/match/apmeoveridx.o obj/src/match/asqg_writer.o obj/src/match/bare-encseq.o obj/src/match/bcktab.o obj/src/match/cgr_spacedseed.o obj/src/match/chain2dim.o obj/src/match/chainofin.o obj/src/match/cutendpfx.o obj/src/match/dbs_spaced_seeds.o obj/src/match/diagband-struct.o obj/src/match/diagbandseed.o obj/src/match/dist-short.o obj/src/match/echoseq.o obj/src/match/eis-blockcomp-param.o obj/src/match/eis-blockcomp.o obj/src/match/eis-bwtseq-construct.o obj/src/match/eis-bwtseq-context-param.o obj/src/match/eis-bwtseq-context.o obj/src/match/eis-bwtseq-extinfo.o obj/src/match/eis-bwtseq-param.o obj/src/match/eis-bwtseq-sass.o obj/src/match/eis-bwtseq.o obj/src/match/eis-encidxseq-construct.o obj/src/match/eis-encidxseq-param.o obj/src/match/eis-encidxseq.o obj/src/match/eis-mrangealphabet.o obj/src/match/eis-sa-common.o obj/src/match/eis-seqblocktranslate.o obj/src/match/eis-seqranges.o obj/src/match/eis-sequencemultiread.o obj/src/match/eis-specialsrank.o obj/src/match/eis-suffixarray-interface.o obj/src/match/eis-suffixerator-interface.o obj/src/match/eis-voiditf.o obj/src/match/encseq2offset.o obj/src/match/enum-patt.o obj/src/match/esa-bottomup.o obj/src/match/esa-dfs.o obj/src/match/esa-lcpintervals.o obj/src/match/esa-map.o obj/src/match/esa-maxpairs.o obj/src/match/esa-merge.o obj/src/match/esa-minunique.o obj/src/match/esa-mmsearch.o obj/src/match/esa-scanprj.o obj/src/match/esa-seqread.o obj/src/match/esa-shulen.o obj/src/match/esa-splititv-simple.o obj/src/match/esa-splititv.o obj/src/match/esa-spmitvs.o obj/src/match/esa-spmsk.o obj/src/match/esa_lcpintervals_visitor.o obj/src/match/esa_spmitvs_visitor.o obj/src/match/esa_visitor.o obj/src/match/firstcodes-accum.o obj/src/match/firstcodes-cache.o obj/src/match/firstcodes-insert.o obj/src/match/firstcodes-psbuf.o obj/src/match/firstcodes-scan.o obj/src/match/firstcodes-spacelog.o obj/src/match/firstcodes-tab.o obj/src/match/firstcodes.o obj/src/match/fmi-fwduni.o obj/src/match/fmi-keyval.o obj/src/match/fmi-locate.o obj/src/match/fmi-map.o obj/src/match/fmi-mapspec.o obj/src/match/fmi-mkindex.o obj/src/match/fmi-save.o obj/src/match/fmi-sufbwtstream.o obj/src/match/ft-eoplist.o obj/src/match/ft-front-generation.o obj/src/match/ft-front-prune.o obj/src/match/ft-polish.o obj/src/match/ft-trimstat.o obj/src/match/gfa_writer.o obj/src/match/giextract.o obj/src/match/greedyedist.o obj/src/match/greedyfwdmat.o obj/src/match/hashfirstcodes.o obj/src/match/hlk-version.o obj/src/match/hplstore.o obj/src/match/idx-limdfs.o obj/src/match/idxlocali.o obj/src/match/idxlocalidp.o obj/src/match/idxlocalisw.o obj/src/match/index_options.o obj/src/match/initbasepower.o obj/src/match/initeqsvec.o obj/src/match/iter-window.o obj/src/match/karlin_altschul_stat.o obj/src/match/kmer2string.o obj/src/match/lua_tools.o obj/src/match/marksubstring.o obj/src/match/merger-trie.o obj/src/match/mssufpat.o obj/src/match/myersapm.o obj/src/match/nullcols.o obj/src/match/optionargmode.o obj/src/match/pck-count-nodes.o obj/src/match/pckbucket.o obj/src/match/pckdfs.o obj/src/match/prsqualint.o obj/src/match/pssm.o obj/src/match/querymatch-align.o obj/src/match/querymatch-display.o obj/src/match/querymatch.o obj/src/match/radixsort_str.o obj/src/match/randomcodes-correct.o obj/src/match/randomcodes-find-seldom.o obj/src/match/randomcodes-hpcorrect.o obj/src/match/randomcodes-insert.o obj/src/match/randomcodes-sfx-partssuf.o obj/src/match/randomcodes-tab.o obj/src/match/randomcodes.o obj/src/match/rdj-cntlist.o obj/src/match/rdj-contfind-bottomup.o obj/src/match/rdj-contfinder.o obj/src/match/rdj-contigpaths.o obj/src/match/rdj-contigs-graph.o obj/src/match/rdj-contigs-writer.o obj/src/match/rdj-errfind.o obj/src/match/rdj-ovlfind-bf.o obj/src/match/rdj-ovlfind-dp.o obj/src/match/rdj-ovlfind-gusfield.o obj/src/match/rdj-ovlfind-kmp.o obj/src/match/rdj-pairwise.o obj/src/match/rdj-spmfind.o obj/src/match/rdj-spmlist.o obj/src/match/rdj-spmproc.o obj/src/match/rdj-strgraph.o obj/src/match/rdj-twobitenc-editor.o obj/src/match/rdj-version.o obj/src/match/reads2twobit.o obj/src/match/reads_libraries_table.o obj/src/match/rectangle-store.o obj/src/match/revcompl.o obj/src/match/seed-extend-iter.o obj/src/match/seed-extend.o obj/src/match/seed_extend_parts.o obj/src/match/seqabstract.o obj/src/match/seqnumrelpos.o obj/src/match/sfx-apfxlen.o obj/src/match/sfx-bentsedg.o obj/src/match/sfx-bltrie.o obj/src/match/sfx-copysort.o obj/src/match/sfx-diffcov.o obj/src/match/sfx-enumcodes.o obj/src/match/sfx-lcpvalues.o obj/src/match/sfx-linlcp.o obj/src/match/sfx-lwcheck.o obj/src/match/sfx-mappedstr.o obj/src/match/sfx-maprange.o obj/src/match/sfx-opt.o obj/src/match/sfx-outprj.o obj/src/match/sfx-partssuf.o obj/src/match/sfx-radixsort.o obj/src/match/sfx-run.o obj/src/match/sfx-sain.o obj/src/match/sfx-shortreadsort.o obj/src/match/sfx-suffixer.o obj/src/match/sfx-suffixgetset.o obj/src/match/sfx-suftaborder.o obj/src/match/shu-dfs.o obj/src/match/shu-divergence.o obj/src/match/shu-encseq-gc.o obj/src/match/shu-genomediff.o obj/src/match/shu_unitfile.o obj/src/match/spaced-seeds.o obj/src/match/specialrank.o obj/src/match/spmsuftab.o obj/src/match/squarededist.o obj/src/match/substriter.o obj/src/match/tagerator.o obj/src/match/test-mappedstr.o obj/src/match/test-maxpairs.o obj/src/match/test-mergeesa.o obj/src/match/test-mtrieins.o obj/src/match/test-pairwise.o obj/src/match/turnwheels.o obj/src/match/twobits2kmers.o obj/src/match/tyr-map.o obj/src/match/tyr-mersplit.o obj/src/match/tyr-mkindex.o obj/src/match/tyr-occratio.o obj/src/match/tyr-search.o obj/src/match/xdrop.o obj/src/ltr/gt_ltrclustering.o obj/src/ltr/gt_ltrdigest.o obj/src/ltr/gt_ltrharvest.o obj/src/ltr/ltr_classify_stream.o obj/src/ltr/ltr_cluster_prepare_seq_visitor.o obj/src/ltr/ltr_cluster_stream.o obj/src/ltr/ltr_four_char_motif.o obj/src/ltr/ltr_input_check_visitor.o obj/src/ltr/ltr_orf_annotator_stream.o obj/src/ltr/ltr_refseq_match_stream.o obj/src/ltr/ltrdigest_file_out_stream.o obj/src/ltr/ltrdigest_pbs_visitor.o obj/src/ltr/ltrdigest_pdom_visitor.o obj/src/ltr/ltrdigest_ppt_visitor.o obj/src/ltr/ltrdigest_strand_assign_visitor.o obj/src/ltr/ltrharvest_fasta_out_stream.o obj/src/ltr/ltrharvest_fasta_out_visitor.o obj/src/ltr/ltrharvest_stream.o obj/src/ltr/ltrharvest_tabout_stream.o obj/src/ltr/ltrharvest_tabout_visitor.o obj/src/ltr/pdom_model_set.o obj/src/mgth/metagenomethreader.o obj/src/mgth/mg_codon.o obj/src/mgth/mg_combinedscore.o obj/src/mgth/mg_compute_gene_prediction.o obj/src/mgth/mg_computepath.o obj/src/mgth/mg_outputwriter.o obj/src/mgth/mg_reverse.o obj/src/mgth/mg_xmlparser.o obj/src/annotationsketch/block.o obj/src/annotationsketch/canvas.o obj/src/annotationsketch/canvas_cairo.o obj/src/annotationsketch/canvas_cairo_context.o obj/src/annotationsketch/canvas_cairo_file.o obj/src/annotationsketch/color.o obj/src/annotationsketch/coords.o obj/src/annotationsketch/custom_track.o obj/src/annotationsketch/custom_track_example.o obj/src/annotationsketch/custom_track_gc_content.o obj/src/annotationsketch/custom_track_script_wrapper.o obj/src/annotationsketch/diagram.o obj/src/annotationsketch/drawing_range.o obj/src/annotationsketch/element.o obj/src/annotationsketch/graphics.o obj/src/annotationsketch/graphics_cairo.o obj/src/annotationsketch/gt_sketch.o obj/src/annotationsketch/gt_sketch_page.o obj/src/annotationsketch/image_info.o obj/src/annotationsketch/layout.o obj/src/annotationsketch/line.o obj/src/annotationsketch/line_breaker.o obj/src/annotationsketch/line_breaker_bases.o obj/src/annotationsketch/line_breaker_captions.o obj/src/annotationsketch/luastyle.o obj/src/annotationsketch/rec_map.o obj/src/annotationsketch/style.o obj/src/annotationsketch/text_width_calculator.o obj/src/annotationsketch/text_width_calculator_cairo.o obj/src/annotationsketch/track.o \ -o lib/libgenometools.so.0 -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 /usr/lib/libbam.a cc -c src/examples/sketch_constructed.c -o obj/src/examples/sketch_constructed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/sketch_constructed.o cc -c src/examples/sketch_parsed_with_ctrack.c -o obj/src/examples/sketch_parsed_with_ctrack.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/sketch_parsed_with_ctrack.o cc -c src/examples/sketch_parsed.c -o obj/src/examples/sketch_parsed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/sketch_parsed.o cc -c src/examples/sketch_parsed_with_ordering.c -o obj/src/examples/sketch_parsed_with_ordering.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/sketch_parsed_with_ordering.o cc -c src/tools/gt_tallymer.c -o obj/src/tools/gt_tallymer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_tallymer.o cc -c src/tools/gt_sfxmap.c -o obj/src/tools/gt_sfxmap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sfxmap.o test -d bin/examples || mkdir -p bin/examples test -d bin/examples || mkdir -p bin/examples cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/custom_stream.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -o bin/examples/custom_stream cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/gff3sort.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -o bin/examples/gff3sort test -d bin/examples || mkdir -p bin/examples test -d bin/examples || mkdir -p bin/examples cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/gff3validator.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -o bin/examples/gff3validator cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/noop.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 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-I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sortbench.o cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/sketch_constructed.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 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-lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -o bin/examples/sketch_parsed_with_ctrack test -d bin/examples || mkdir -p bin/examples cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/sketch_parsed_with_ordering.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -o bin/examples/sketch_parsed_with_ordering cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/sketch_parsed.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -o bin/examples/sketch_parsed test -d bin || mkdir -p bin cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/gt.o obj/src/gtr.o obj/src/gtt.o obj/src/interactive.o obj/src/tools/gt_bed_to_gff3.o obj/src/tools/gt_cds.o obj/src/tools/gt_chain2dim.o obj/src/tools/gt_chseqids.o obj/src/tools/gt_clean.o obj/src/tools/gt_compreads.o obj/src/tools/gt_compreads_compress.o obj/src/tools/gt_compreads_decompress.o obj/src/tools/gt_compreads_refcompress.o obj/src/tools/gt_compreads_refdecompress.o obj/src/tools/gt_compressedbits.o obj/src/tools/gt_condenseq.o obj/src/tools/gt_condenseq_blast.o obj/src/tools/gt_condenseq_compress.o obj/src/tools/gt_condenseq_extract.o obj/src/tools/gt_condenseq_hmmsearch.o obj/src/tools/gt_condenseq_info.o obj/src/tools/gt_condenseq_search.o obj/src/tools/gt_congruence.o obj/src/tools/gt_consensus_sa.o obj/src/tools/gt_convertseq.o obj/src/tools/gt_csa.o obj/src/tools/gt_dev.o obj/src/tools/gt_dot.o obj/src/tools/gt_dupfeat.o obj/src/tools/gt_encseq.o obj/src/tools/gt_encseq2spm.o obj/src/tools/gt_encseq_bench.o obj/src/tools/gt_encseq_bitextract.o obj/src/tools/gt_encseq_check.o obj/src/tools/gt_encseq_decode.o obj/src/tools/gt_encseq_encode.o obj/src/tools/gt_encseq_info.o obj/src/tools/gt_encseq_md5.o obj/src/tools/gt_encseq_sample.o obj/src/tools/gt_eval.o obj/src/tools/gt_extractfeat.o obj/src/tools/gt_extractseq.o obj/src/tools/gt_extracttarget.o obj/src/tools/gt_fastq_sample.o obj/src/tools/gt_featureindex.o obj/src/tools/gt_fingerprint.o obj/src/tools/gt_gdiffcalc.o obj/src/tools/gt_genomediff.o obj/src/tools/gt_gff3.o obj/src/tools/gt_gff3_to_gtf.o obj/src/tools/gt_gff3validator.o obj/src/tools/gt_gtf_to_gff3.o obj/src/tools/gt_guessprot.o obj/src/tools/gt_hop.o obj/src/tools/gt_id_to_md5.o obj/src/tools/gt_idxlocali.o obj/src/tools/gt_inlineseq_add.o obj/src/tools/gt_inlineseq_split.o obj/src/tools/gt_interfeat.o obj/src/tools/gt_kmer_database.o obj/src/tools/gt_linspace_align.o obj/src/tools/gt_loccheck.o obj/src/tools/gt_magicmatch.o obj/src/tools/gt_matchtool.o obj/src/tools/gt_matstat.o obj/src/tools/gt_md5_to_id.o obj/src/tools/gt_merge.o obj/src/tools/gt_mergeesa.o obj/src/tools/gt_mergefeat.o obj/src/tools/gt_mgth.o obj/src/tools/gt_mkfeatureindex.o obj/src/tools/gt_mkfmindex.o obj/src/tools/gt_mmapandread.o obj/src/tools/gt_orffinder.o obj/src/tools/gt_packedindex.o obj/src/tools/gt_packedindex_chk_integrity.o obj/src/tools/gt_packedindex_chk_search.o obj/src/tools/gt_packedindex_mkctxmap.o obj/src/tools/gt_packedindex_trsuftab.o obj/src/tools/gt_paircmp.o obj/src/tools/gt_parsexrf.o obj/src/tools/gt_patternmatch.o obj/src/tools/gt_prebwt.o obj/src/tools/gt_readjoiner.o obj/src/tools/gt_readjoiner_asqg.o obj/src/tools/gt_readjoiner_assembly.o obj/src/tools/gt_readjoiner_cgraph.o obj/src/tools/gt_readjoiner_cnttest.o obj/src/tools/gt_readjoiner_correct.o obj/src/tools/gt_readjoiner_gfa.o obj/src/tools/gt_readjoiner_graph.o obj/src/tools/gt_readjoiner_overlap.o obj/src/tools/gt_readjoiner_prefilter.o obj/src/tools/gt_readjoiner_spmtest.o obj/src/tools/gt_readreads.o obj/src/tools/gt_regioncov.o obj/src/tools/gt_repfind.o obj/src/tools/gt_sain.o obj/src/tools/gt_sam_interface.o obj/src/tools/gt_script_filter.o obj/src/tools/gt_seed_extend.o obj/src/tools/gt_select.o obj/src/tools/gt_seq.o obj/src/tools/gt_seqcorrect.o obj/src/tools/gt_seqfilter.o obj/src/tools/gt_seqids.o obj/src/tools/gt_seqlensort.o obj/src/tools/gt_seqmutate.o obj/src/tools/gt_seqorder.o obj/src/tools/gt_seqstat.o obj/src/tools/gt_seqtransform.o obj/src/tools/gt_seqtranslate.o obj/src/tools/gt_sequniq.o obj/src/tools/gt_sfxmap.o obj/src/tools/gt_show_seedext.o obj/src/tools/gt_shredder.o obj/src/tools/gt_shulen.o obj/src/tools/gt_simreads.o obj/src/tools/gt_skproto.o obj/src/tools/gt_snpper.o obj/src/tools/gt_sortbench.o obj/src/tools/gt_speck.o obj/src/tools/gt_splicesiteinfo.o obj/src/tools/gt_splitfasta.o obj/src/tools/gt_stat.o obj/src/tools/gt_suffixerator.o obj/src/tools/gt_tagerator.o obj/src/tools/gt_tallymer.o obj/src/tools/gt_template.o obj/src/tools/gt_tir.o obj/src/tools/gt_trieins.o obj/src/tools/gt_uniq.o obj/src/tools/gt_wtree.o obj/src/tools/gt_wtree_bench.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -o bin/gt bin/gt gtscripts/gtdoc.lua -html . \ > www/genometools.org/htdocs/libgenometools.html bin/gt gtscripts/gtdoc.lua -lua -html . \ > www/genometools.org/htdocs/docs.html sed -nf scripts/incl.sed \ www/genometools.org/htdocs/examples_tmpl.html | \ sed 'N;N;s/\n//' > /tmp/tmp.sed.$$ && \ sed -f /tmp/tmp.sed.$$ \ www/genometools.org/htdocs/examples_tmpl.html > \ www/genometools.org/htdocs/examples.html; rm -f /tmp/tmp.sed.$$ bin/gt gtscripts/gtdoc.lua -tex . \ > doc/manuals/api_reference.tex bin/gt gtscripts/gtdoc.lua -lua -tex . \ > doc/manuals/gtscript_reference.tex make -C ./doc/devguide make[3]: Entering directory '/build/genometools-1.6.2+ds/doc/devguide' while (pdflatex --shell-escape devguide ; \ grep -q "Rerun to get cross" devguide.log ) do true ; \ done faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... 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Transcript written on devguide.log. make[3]: Leaving directory '/build/genometools-1.6.2+ds/doc/devguide' bin/gt -list > /tmp/list.txt warning: skipping tool 'mgth' in iterator (not a GtTool object) warning: skipping tool 'mkfmindex' in iterator (not a GtTool object) warning: skipping tool 'suffixerator' in iterator (not a GtTool object) warning: skipping tool 'chkintegrity' in iterator (not a GtTool object) warning: skipping tool 'chksearch' in iterator (not a GtTool object) warning: skipping tool 'mkctxmap' in iterator (not a GtTool object) warning: skipping tool 'mkindex' in iterator (not a GtTool object) warning: skipping tool 'trsuftab' in iterator (not a GtTool object) bin/gt -createman /tmp/gtmanpages warning: skipping tool 'mgth' in iterator (not a GtTool object) warning: skipping tool 'mkfmindex' in iterator (not a GtTool object) warning: skipping tool 'suffixerator' in iterator (not a GtTool object) warning: skipping tool 'chkintegrity' in iterator (not a GtTool object) warning: skipping tool 'chksearch' in iterator (not a GtTool object) warning: skipping tool 'mkctxmap' in iterator (not a GtTool object) warning: skipping tool 'mkindex' in iterator (not a GtTool object) warning: skipping tool 'trsuftab' in iterator (not a GtTool object) asciidoc --backend=xhtml11 -a linkcss -a stylesdir=. \ -a stylesheet=style.css -a badges -a icons \ -f www/genometools.org/htdocs/tool_list.conf \ --out-file www/genometools.org/htdocs/tools.html /tmp/list.txt test -d www/genometools.org/htdocs/tools || mkdir -p www/genometools.org/htdocs/tools rm -f www/genometools.org/htdocs/tools/* scripts/create_html /tmp/gtmanpages www/genometools.org/htdocs/ .............................................................................................. rm -rf /tmp/list.txt /tmp/gtmanpages make -C ./doc/manuals annotationsketch make[3]: Entering directory '/build/genometools-1.6.2+ds/doc/manuals' test -e annotationsketch-pdf.aux && mv annotationsketch-pdf.aux annotationsketch.aux make[3]: [Makefile:39: annotationsketch-pdf.aux] Error 1 (ignored) pdflatex annotationsketch.tex && rm annotationsketch.pdf faketime: You appear to be running faketime within a libfaketime environment. 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LaTeX Warning: Reference `sec:class_GtMergeFeatureStream' on page 28 undefined on input line 161. [28] LaTeX Warning: Reference `sec:class_GtMergeStream' on page 29 undefined on inpu t line 163. LaTeX Warning: Reference `sec:class_GtMetaNode' on page 29 undefined on input l ine 165. LaTeX Warning: Reference `sec:class_GtMutex' on page 29 undefined on input line 167. LaTeX Warning: Reference `sec:class_GtNodeStream' on page 29 undefined on input line 169. LaTeX Warning: Reference `sec:class_GtNodeStreamClass' on page 29 undefined on input line 171. LaTeX Warning: Reference `sec:class_GtNodeVisitor' on page 29 undefined on inpu t line 173. LaTeX Warning: Reference `sec:class_GtORFIterator' on page 29 undefined on inpu t line 175. LaTeX Warning: Reference `sec:class_GtOption' on page 29 undefined on input lin e 177. LaTeX Warning: Reference `sec:class_GtOptionParser' on page 29 undefined on inp ut line 179. LaTeX Warning: Reference `sec:class_GtOutputFileInfo' on page 29 undefined on i nput line 181. LaTeX Warning: Reference `sec:class_GtPhase' on page 29 undefined on input line 183. LaTeX Warning: Reference `sec:class_GtQueue' on page 29 undefined on input line 185. LaTeX Warning: Reference `sec:class_GtRBTree' on page 29 undefined on input lin e 187. LaTeX Warning: Reference `sec:class_GtRBTreeIter' on page 29 undefined on input line 189. LaTeX Warning: Reference `sec:class_GtRDBMySQL' on page 29 undefined on input l ine 191. LaTeX Warning: Reference `sec:class_GtRDBSqlite' on page 29 undefined on input line 193. LaTeX Warning: Reference `sec:class_GtRDBVisitor' on page 29 undefined on input line 195. LaTeX Warning: Reference `sec:class_GtRWLock' on page 29 undefined on input lin e 197. LaTeX Warning: Reference `sec:class_GtRange' on page 29 undefined on input line 199. LaTeX Warning: Reference `sec:class_GtReadmode' on page 29 undefined on input l ine 201. LaTeX Warning: Reference `sec:class_GtRecMap' on page 29 undefined on input lin e 203. LaTeX Warning: Reference `sec:class_GtRegionMapping' on page 29 undefined on in put line 205. LaTeX Warning: Reference `sec:class_GtRegionNode' on page 29 undefined on input line 207. LaTeX Warning: Reference `sec:class_GtScoreMatrix' on page 29 undefined on inpu t line 209. LaTeX Warning: Reference `sec:class_GtScriptWrapperStream' on page 29 undefined on input line 211. LaTeX Warning: Reference `sec:class_GtScriptWrapperVisitor' on page 29 undefine d on input line 213. LaTeX Warning: Reference `sec:class_GtSelectStream' on page 29 undefined on inp ut line 215. [29] LaTeX Warning: Reference `sec:class_GtSeq' on page 30 undefined on input line 2 17. LaTeX Warning: Reference `sec:class_GtSeqIterator' on page 30 undefined on inpu t line 219. LaTeX Warning: Reference `sec:class_GtSeqIteratorFastQ' on page 30 undefined on input line 221. LaTeX Warning: Reference `sec:class_GtSeqIteratorSequenceBuffer' on page 30 und efined on input line 223. LaTeX Warning: Reference `sec:class_GtSeqid2FileInfo' on page 30 undefined on i nput line 225. LaTeX Warning: Reference `sec:class_GtSequenceNode' on page 30 undefined on inp ut line 227. LaTeX Warning: Reference `sec:class_GtSetSourceVisitor' on page 30 undefined on input line 229. LaTeX Warning: Reference `sec:class_GtSortStream' on page 30 undefined on input line 231. LaTeX Warning: Reference `sec:class_GtSpliceSiteInfoStream' on page 30 undefine d on input line 233. LaTeX Warning: Reference `sec:class_GtSplitter' on page 30 undefined on input l ine 235. LaTeX Warning: Reference `sec:class_GtStatStream' on page 30 undefined on input line 237. LaTeX Warning: Reference `sec:class_GtStr' on page 30 undefined on input line 2 39. LaTeX Warning: Reference `sec:class_GtStrArray' on page 30 undefined on input l ine 241. LaTeX Warning: Reference `sec:class_GtStrCache' on page 30 undefined on input l ine 243. LaTeX Warning: Reference `sec:class_GtStrand' on page 30 undefined on input lin e 245. LaTeX Warning: Reference `sec:class_GtStyle' on page 30 undefined on input line 247. LaTeX Warning: Reference `sec:class_GtTagValueMap' on page 30 undefined on inpu t line 249. LaTeX Warning: Reference `sec:class_GtTextWidthCalculator' on page 30 undefined on input line 251. LaTeX Warning: Reference `sec:class_GtTextWidthCalculatorCairo' on page 30 unde fined on input line 253. LaTeX Warning: Reference `sec:class_GtThread' on page 30 undefined on input lin e 255. LaTeX Warning: Reference `sec:class_GtTimer' on page 30 undefined on input line 257. LaTeX Warning: Reference `sec:class_GtTool' on page 30 undefined on input line 259. LaTeX Warning: Reference `sec:class_GtToolbox' on page 30 undefined on input li ne 261. LaTeX Warning: Reference `sec:class_GtTransTable' on page 30 undefined on input line 263. LaTeX Warning: Reference `sec:class_GtTranslator' on page 30 undefined on input line 265. LaTeX Warning: Reference `sec:class_GtTypeChecker' on page 30 undefined on inpu t line 267. LaTeX Warning: Reference `sec:class_GtTypeCheckerOBO' on page 30 undefined on i nput line 269. [30] LaTeX Warning: Reference `sec:class_GtUniqStream' on page 31 undefined on input line 271. LaTeX Warning: Reference `sec:class_GtVisitorStream' on page 31 undefined on in put line 273. LaTeX Warning: Reference `sec:class_GtXRFChecker' on page 31 undefined on input line 275. LaTeX Warning: Reference `Array2dim' on page 31 undefined on input line 282. LaTeX Warning: Reference `Array3dim' on page 31 undefined on input line 284. LaTeX Warning: Reference `Arraydef' on page 31 undefined on input line 286. LaTeX Warning: Reference `Assert' on page 31 undefined on input line 288. LaTeX Warning: Reference `Bsearch' on page 31 undefined on input line 290. 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LaTeX Warning: Reference `FASTA' on page 31 undefined on input line 316. LaTeX Warning: Reference `FileAllocator' on page 31 undefined on input line 318 . LaTeX Warning: Reference `Fileutils' on page 31 undefined on input line 320. LaTeX Warning: Reference `FunctionPointer' on page 31 undefined on input line 3 22. LaTeX Warning: Reference `GFF3Escaping' on page 31 undefined on input line 324. [31] LaTeX Warning: Reference `GlobalChaining' on page 32 undefined on input line 32 6. LaTeX Warning: Reference `Grep' on page 32 undefined on input line 328. LaTeX Warning: Reference `Init' on page 32 undefined on input line 330. LaTeX Warning: Reference `Log' on page 32 undefined on input line 332. LaTeX Warning: Reference `MD5Fingerprint' on page 32 undefined on input line 33 4. LaTeX Warning: Reference `MD5Seqid' on page 32 undefined on input line 336. LaTeX Warning: Reference `Mathsupport' on page 32 undefined on input line 338. 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[33] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd) [34] [35] [36] [37] [38] Underfull \hbox (badness 5563) in paragraph at lines 1260--1262 []\OT1/ptm/m/n/10.95 Set the size of \OT1/cmtt/m/n/10.95 array \OT1/ptm/m/n/10. 95 to \OT1/cmtt/m/n/10.95 size\OT1/ptm/m/n/10.95 . \OT1/cmtt/m/n/10.95 size \OT 1/ptm/m/n/10.95 must be smaller or equal than [39] [40] [41] [42] Overfull \hbox (7.61789pt too wide) in paragraph at lines 1401--1404 \OT1/ptm/m/n/10.95 Implements the \OT1/cmtt/m/n/10.95 GtNodeStream \OT1/ptm/m/n /10.95 in-ter-face. \OT1/cmtt/m/n/10.95 GtArrayOutStream \OT1/ptm/m/n/10.95 tak es an ar-ray of \OT1/cmtt/m/n/10.95 GtGenomeNodes [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] Overfull \hbox (33.39326pt too wide) in paragraph at lines 2616--2618 \OT1/cmtt/m/n/10.95 GtCDSVisitor \OT1/ptm/m/n/10.95 is a \OT1/cmtt/m/n/10.95 Gt NodeVisitor \OT1/ptm/m/n/10.95 that adds CDS fea-tures for the longest ORFs in a \OT1/cmtt/m/n/10.95 GtFeatureNode\OT1/ptm/m/n/10.95 . Overfull \hbox (10.6532pt too wide) in paragraph at lines 2649--2650 [][][][][][][] Overfull \hbox (27.66315pt too wide) in paragraph at lines 2651--2652 [][][][][][][] Underfull \hbox (badness 2922) in paragraph at lines 2656--2658 []\OT1/ptm/m/n/10.95 Sets \OT1/cmtt/m/n/10.95 region[]mapping \OT1/ptm/m/n/10.9 5 to be the re-gion map-ping spec-i-fy-ing the se-quence for [55] [56] [57] Overfull \hbox (16.32318pt too wide) in paragraph at lines 2835--2836 [][][][][][][] [58] [59] [60] [61] [62] [63] Overfull \hbox (10.6532pt too wide) in paragraph at lines 3270--3271 [][][][][][] Overfull \hbox (33.33313pt too wide) in paragraph at lines 3272--3273 [][][][][][] Overfull \hbox (27.66315pt too wide) in paragraph at lines 3274--3275 [][][][][][] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] Underfull \hbox (badness 3039) in paragraph at lines 4744--4749 []\OT1/ptm/m/n/10.95 Enables sup-port for loss-less re-pro-duc-tion of the orig -i-nal se-quence, re-gard-less Underfull \hbox (badness 1655) in paragraph at lines 4744--4749 \OT1/ptm/m/n/10.95 of al-pha-bet trans-for-ma-tions that may ap-ply. En-coded s e-quences cre-ated with- Underfull \hbox (badness 2359) in paragraph at lines 4744--4749 \OT1/ptm/m/n/10.95 out this sup-port will not be able to be loaded via a \OT1/c mtt/m/n/10.95 GtEncseqLoader \OT1/ptm/m/n/10.95 with [78] [79] [80] [81] [82] [83] [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 5425--5427 []\OT1/ptm/m/n/10.95 Reinitializes the given \OT1/cmtt/m/n/10.95 esr \OT1/ptm/m /n/10.95 with the val-ues as de-scribed in [86] [87] [88] [89] Overfull \hbox (44.6731pt too wide) in paragraph at lines 5926--5927 [][][][][][][] [90] [91] [92] Overfull \hbox (53.83537pt too wide) in paragraph at lines 6022--6041 \OT1/ptm/m/n/10.95 GFF3 with the \OT1/cmtt/m/n/10.95 Parent \OT1/ptm/m/n/10.95 and \OT1/cmtt/m/n/10.95 ID \OT1/ptm/m/n/10.95 at-tributes) are re-al-ized in th e C API with the \OT1/cmtt/m/n/10.95 gt[]feature[]node[]add[]child() [93] Underfull \hbox (badness 10000) in paragraph at lines 6427--6430 []\OT1/ptm/m/n/10.95 Delivers the key (in \OT1/cmtt/m/n/10.95 attr[]name\OT1/pt m/m/n/10.95 )and value (in \OT1/cmtt/m/n/10.95 attr[]value\OT1/ptm/m/n/10.95 ) of an at- Underfull \hbox (badness 8094) in paragraph at lines 6427--6430 \OT1/ptm/m/n/10.95 tribute. The \OT1/cmtt/m/n/10.95 data \OT1/ptm/m/n/10.95 pa- ram-e-ter car-ries over ar-bi-trary user data from the Overfull \hbox (4.98322pt too wide) in paragraph at lines 6492--6493 [][][][][][][] [94] [95] [96] [97] [98] Overfull \hbox (10.6532pt too wide) in paragraph at lines 6657--6658 [][][][][][][] Overfull \hbox (27.66315pt too wide) in paragraph at lines 6671--6672 [][][][][][][] Overfull \hbox (39.00311pt too wide) in paragraph at lines 6685--6686 [][][][][][][] [99] Underfull \hbox (badness 1509) in paragraph at lines 6721--6724 \OT1/cmtt/m/n/10.95 fi\OT1/ptm/m/n/10.95 . Note: The \OT1/cmtt/m/n/10.95 GtFeat ureStream \OT1/ptm/m/n/10.95 class is now dep-re-cated. Please use the [100] Underfull \hbox (badness 10000) in paragraph at lines 6881--6884 []\OT1/ptm/m/n/10.95 Returns \OT1/cmtt/m/n/10.95 GT[]FILE[]MODE[]GZIP \OT1/ptm/ m/n/10.95 if file with \OT1/cmtt/m/n/10.95 path \OT1/ptm/m/n/10.95 ends with '. gz', [101] [102] Overfull \hbox (44.6731pt too wide) in paragraph at lines 7052--7053 [][][][][][][] Overfull \hbox (44.6731pt too wide) in paragraph at lines 7066--7067 [][][][][][][] Overfull \hbox (44.6731pt too wide) in paragraph at lines 7080--7081 [][][][][][][] Overfull \hbox (44.6731pt too wide) in paragraph at lines 7093--7094 [][][][][][][] [103] [104] Underfull \hbox (badness 4108) in paragraph at lines 7206--7209 []\OT1/ptm/m/n/10.95 Return a new $\OML/ztmcm/m/it/10.95 <$\OT1/ptm/m/n/10.95 G tGFF3Parser$\OML/ztmcm/m/it/10.95 >$ \OT1/ptm/m/n/10.95 ob-ject with op-tional \OT1/cmtt/m/n/10.95 type[]checker\OT1/ptm/m/n/10.95 . If a Overfull \hbox (44.6731pt too wide) in paragraph at lines 7244--7245 [][][][][][][] [105] [106] [107] [108] Underfull \hbox (badness 1424) in paragraph at lines 7636--7638 []\OT1/ptm/m/n/10.95 Compare \OT1/cmtt/m/n/10.95 genome[]node[]a \OT1/ptm/m/n/1 0.95 with \OT1/cmtt/m/n/10.95 genome[]node[]b \OT1/ptm/m/n/10.95 and re-turn th e re-sult (sim-i-lar to [109] [110] [111] [112] [113] [114] [115] [116] [117] Underfull \hbox (badness 2875) in paragraph at lines 8410--8413 []\OT1/ptm/m/n/10.95 Iterate over \OT1/cmtt/m/n/10.95 hashmap \OT1/ptm/m/n/10.9 5 in ei-ther al-pha-bet-i-cal or-der (if \OT1/cmtt/m/n/10.95 GtHashType \OT1/pt m/m/n/10.95 was spec-i- Underfull \hbox (badness 1762) in paragraph at lines 8410--8413 \OT1/ptm/m/n/10.95 fied as \OT1/cmtt/m/n/10.95 GT[]HASH[]STRING\OT1/ptm/m/n/10. 95 ) or nu-mer-i-cal or-der (if \OT1/cmtt/m/n/10.95 GtHashType \OT1/ptm/m/n/10. 95 was spec-i-fied as [118] [119] [120] Overfull \hbox (1.94502pt too wide) in paragraph at lines 8543--8545 \OT1/ptm/m/n/10.95 Implements the \OT1/cmtt/m/n/10.95 GtNodeStream \OT1/ptm/m/n /10.95 in-ter-face. A \OT1/cmtt/m/n/10.95 GtInterFeatureStream \OT1/ptm/m/n/10. 95 in-serts new fea-ture nodes [121] [122] [123] [124] [125] [126] [127] Underfull \hbox (badness 1596) in paragraph at lines 9213--9216 \OT1/ptm/m/n/10.95 it re-trieves from its \OT1/cmtt/m/n/10.95 in[]stream \OT1/p tm/m/n/10.95 to ``reg-u-lar'' ones (with the help of the given [128] [129] [130] [131] [132] [133] Underfull \hbox (badness 1163) in paragraph at lines 9733--9736 []\OT1/ptm/m/n/10.95 Creates a new \OT1/cmtt/m/n/10.95 GtMatchOpen \OT1/ptm/m/n /10.95 ob-ject, stor-ing long val-ues \OT1/cmtt/m/n/10.95 weight \OT1/ptm/m/n/1 0.95 in ad-di-tion to [134] [135] [136] [137] [138] Underfull \hbox (badness 1655) in paragraph at lines 10101--10107 \OT1/ptm/m/n/10.95 (trans-fers own-er-ship to \OT1/cmtt/m/n/10.95 genome[]node\ OT1/ptm/m/n/10.95 ). If no er-ror oc-curs, 0 is re-turned and Underfull \hbox (badness 3240) in paragraph at lines 10119--10126 \OT1/ptm/m/n/10.95 is ex-hausted (0 is re-turned) or an er-ror oc-curs (-1 is r e-turned and \OT1/cmtt/m/n/10.95 err \OT1/ptm/m/n/10.95 is Underfull \hbox (badness 4266) in paragraph at lines 10119--10126 \OT1/ptm/m/n/10.95 set). All re-trieved \OT1/cmtt/m/n/10.95 GtGenomeNode\OT1/pt m/m/n/10.95 s are deleted au-to-mat-i-cally with calls to Underfull \hbox (badness 2828) in paragraph at lines 10119--10126 \OT1/cmtt/m/n/10.95 gt[]genome[]node[]delete()\OT1/ptm/m/n/10.95 . This method is ba-si-cally a con-ve-nience method [139] [140] [141] [142] Underfull \hbox (badness 2856) in paragraph at lines 10407--10409 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10423--10425 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10440--10443 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10459--10463 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10477--10481 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10495--10497 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10512--10515 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10530--10533 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10549--10553 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10567--10569 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10584--10587 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10602--10605 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10621--10625 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10639--10641 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10655--10657 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10672--10675 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10691--10695 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10772--10776 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10792--10797 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10811--10813 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10826--10828 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 10000) in paragraph at lines 10843--10846 []\OT1/ptm/m/n/10.95 Return a \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10.95 w ith the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/cmtt/ m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10875--10877 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and [143] [144] [145] [146] [147] [148] [149] [150] Underfull \hbox (badness 1496) in paragraph at lines 11200--11202 []\OT1/ptm/m/n/10.95 Return the \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10.95 ob-ject if an op-tion named \OT1/cmtt/m/n/10.95 option[]string \OT1/ptm/m/n/10 .95 is present in Underfull \hbox (badness 5446) in paragraph at lines 11320--11322 []\OT1/ptm/m/n/10.95 The \OT1/cmtt/m/n/10.95 minimum \OT1/ptm/m/n/10.95 and \OT 1/cmtt/m/n/10.95 maximum \OT1/ptm/m/n/10.95 num-ber of ad-di-tional com-mand li ne ar-gu-ments [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] Overfull \hbox (37.97119pt too wide) in paragraph at lines 12243--12245 \OT1/ptm/m/n/10.95 This enum type de-fines the pos-si-ble reamodes, namely \OT1 /cmtt/m/n/10.95 GT[]READMODE[]FORWARD\OT1/ptm/m/n/10.95 , \OT1/cmtt/m/n/10.95 G T[]READMODE[]REVERSE\OT1/ptm/m/n/10.95 , Underfull \hbox (badness 2626) in paragraph at lines 12270--12273 []\OT1/ptm/m/n/10.95 Returns the \OT1/cmtt/m/n/10.95 GtReadmode \OT1/ptm/m/n/10 .95 for the de-scrip-tion \OT1/cmtt/m/n/10.95 string\OT1/ptm/m/n/10.95 , which must be one of [163] [164] Underfull \hbox (badness 2735) in paragraph at lines 12430--12433 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtRegionMapping \OT1/ptm/ m/n/10.95 ob-ject for the map-ping file with the given Underfull \hbox (badness 10000) in paragraph at lines 12446--12452 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtRegionMapping \OT1/ptm/ m/n/10.95 ob-ject for the se-quence files given in Underfull \hbox (badness 1189) in paragraph at lines 12446--12452 \OT1/cmtt/m/n/10.95 sequence[]filenames\OT1/ptm/m/n/10.95 . If \OT1/cmtt/m/n/10 .95 matchdesc \OT1/ptm/m/n/10.95 is \OT1/cmtt/m/n/10.95 true\OT1/ptm/m/n/10.95 , the se-quence de-scrip-tions from [165] Overfull \hbox (3.68733pt too wide) in paragraph at lines 12587--12589 \OT1/ptm/m/n/10.95 Implements the \OT1/cmtt/m/n/10.95 GtGenomeNode \OT1/ptm/m/n /10.95 in-ter-face. Re-gion nodes cor-re-spond to the $\OML/ztmcm/m/it/10.95 <$ \OT1/ptm/m/n/10.95 ##sequence-region$\OML/ztmcm/m/it/10.95 >$ [166] [167] [168] [169] [170] Overfull \vbox (13.10382pt too high) has occurred while \output is active [171] [172] [173] [174] Underfull \hbox (badness 2698) in paragraph at lines 13272--13274 []\OT1/ptm/m/n/10.95 Create a new \OT1/cmtt/m/n/10.95 GtSequenceNode* \OT1/ptm/ m/n/10.95 rep-re-sent-ing a FASTA en-try with the given Overfull \hbox (4.98322pt too wide) in paragraph at lines 13281--13282 [][][][][] Overfull \hbox (10.6532pt too wide) in paragraph at lines 13282--13283 [][][][][][][] Overfull \hbox (27.66315pt too wide) in paragraph at lines 13308--13309 [][][][][] Overfull \hbox (33.33313pt too wide) in paragraph at lines 13309--13310 [][][][][][][] [175] Overfull \hbox (58.46886pt too wide) in paragraph at lines 13348--13351 \OT1/ptm/m/n/10.95 Implements the \OT1/cmtt/m/n/10.95 GtNodeVisitor \OT1/ptm/m/ n/10.95 in-ter-face. Used with the \OT1/cmtt/m/n/10.95 GtVisitorStream \OT1/ptm /m/n/10.95 class, a \OT1/cmtt/m/n/10.95 GtSetSourceVisitor [176] [177] [178] Overfull \hbox (31.52028pt too wide) in paragraph at lines 13565--13568 \OT1/ptm/m/n/10.95 Implements the \OT1/cmtt/m/n/10.95 GtNodeStream \OT1/ptm/m/n /10.95 in-ter-face. A \OT1/cmtt/m/n/10.95 GtStatStream \OT1/ptm/m/n/10.95 gath- ers statis-tics about the \OT1/cmtt/m/n/10.95 GtGenomeNode Underfull \hbox (badness 3668) in paragraph at lines 13587--13595 \OT1/ptm/m/n/10.95 ment equals \OT1/cmtt/m/n/10.95 true\OT1/ptm/m/n/10.95 : \OT 1/cmtt/m/n/10.95 gene[]length[]distribution\OT1/ptm/m/n/10.95 , \OT1/cmtt/m/n/1 0.95 gene[]score[]distribution\OT1/ptm/m/n/10.95 , Underfull \hbox (badness 10000) in paragraph at lines 13587--13595 \OT1/cmtt/m/n/10.95 exon[]length[]distribution\OT1/ptm/m/n/10.95 , \OT1/cmtt/m/ n/10.95 exon[]number[]distribution\OT1/ptm/m/n/10.95 , [179] Underfull \hbox (badness 5667) in paragraph at lines 13824--13826 []\OT1/ptm/m/n/10.95 Set length of \OT1/cmtt/m/n/10.95 str \OT1/ptm/m/n/10.95 t o \OT1/cmtt/m/n/10.95 length\OT1/ptm/m/n/10.95 . \OT1/cmtt/m/n/10.95 length \OT 1/ptm/m/n/10.95 must be smaller or equal than [180] [181] [182] Underfull \hbox (badness 2564) in paragraph at lines 14071--14073 []\OT1/ptm/m/n/10.95 Set the size of \OT1/cmtt/m/n/10.95 str[]array \OT1/ptm/m/ n/10.95 to \OT1/cmtt/m/n/10.95 size\OT1/ptm/m/n/10.95 . \OT1/cmtt/m/n/10.95 siz e \OT1/ptm/m/n/10.95 must be smaller or equal than [183] [184] Overfull \hbox (21.75429pt too wide) in paragraph at lines 14167--14170 \OT1/ptm/m/n/10.95 This enum type de-fines the pos-si-ble strands. The fol-low- ing strands are de-fined: \OT1/cmtt/m/n/10.95 GT[]STRAND[]FORWARD\OT1/ptm/m/n/1 0.95 , Underfull \hbox (badness 10000) in paragraph at lines 14193--14195 []\OT1/ptm/m/n/10.95 Map \OT1/cmtt/m/n/10.95 strand[]char \OT1/ptm/m/n/10.95 to the cor-re-spond-ing strand enum type. Re-turns [185] [186] [187] [188] [189] [190] [191] Overfull \hbox (83.5338pt too wide) in paragraph at lines 14815--14821 \OT1/cmtt/m/n/10.95 cairo[]t \OT1/ptm/m/n/10.95 and which should be used later via a \OT1/cmtt/m/n/10.95 GtCanvasCairoContext\OT1/ptm/m/n/10.95 , cre-ate a \O T1/cmtt/m/n/10.95 GtTextWidthCalculatorCairo [192] Underfull \hbox (badness 3168) in paragraph at lines 14967--14971 []\OT1/ptm/m/n/10.95 Output the cur-rent state of \OT1/cmtt/m/n/10.95 timer \OT 1/ptm/m/n/10.95 in the for-mat ""GT[]WD".pointer \OT1/cmtt/m/n/10.95 fp \OT1/pt m/m/n/10.95 (see Underfull \hbox (badness 10000) in paragraph at lines 15028--15032 []\OT1/ptm/m/n/10.95 Output the cur-rent state of \OT1/cmtt/m/n/10.95 timer \OT 1/ptm/m/n/10.95 on \OT1/cmtt/m/n/10.95 fp \OT1/ptm/m/n/10.95 since the last cal l of Underfull \hbox (badness 1292) in paragraph at lines 15028--15032 \OT1/cmtt/m/n/10.95 gt[]timer[]show[]progress() \OT1/ptm/m/n/10.95 or the last start of \OT1/cmtt/m/n/10.95 timer\OT1/ptm/m/n/10.95 , along with the cur-rent [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] Underfull \hbox (badness 10000) in paragraph at lines 16219--16220 Underfull \hbox (badness 10000) in paragraph at lines 16231--16232 [208] [209] [210] [211] [212] [213] [214] Underfull \hbox (badness 3364) in paragraph at lines 16926--16931 []\OT1/ptm/m/n/10.95 Print a fasta en-try with op-tional \OT1/cmtt/m/n/10.95 de scription \OT1/ptm/m/n/10.95 and manda-tory \OT1/cmtt/m/n/10.95 sequence \OT1/p tm/m/n/10.95 to Underfull \hbox (badness 3364) in paragraph at lines 16964--16969 []\OT1/ptm/m/n/10.95 Print a fasta en-try with op-tional \OT1/cmtt/m/n/10.95 de scription \OT1/ptm/m/n/10.95 and manda-tory \OT1/cmtt/m/n/10.95 sequence \OT1/p tm/m/n/10.95 to [215] [216] [217] [218] [219] [220] [221] Overfull \hbox (183.05757pt too wide) in paragraph at lines 17618--17620 []\OT1/ptm/m/n/10.95 Find \OT1/cmtt/m/n/10.95 file \OT1/ptm/m/n/10.95 in $\OML/ ztmcm/m/it/10.95 PATH; ifithasnodirname\OT1/ztmcm/m/n/10.95 ; \OML/ztmcm/m/it/1 0.95 set[]todirnameotherwise:Sets[]totheemptystringif[]couldnotbefoundin$\OT1/p tm/m/n/10.95 PATH. Underfull \hbox (badness 10000) in paragraph at lines 17634--17638 []\OT1/ptm/m/n/10.95 Find \OT1/cmtt/m/n/10.95 file \OT1/ptm/m/n/10.95 in the ': '-separated di-rec-tory list (on Win- Underfull \hbox (badness 10000) in paragraph at lines 17634--17638 \OT1/ptm/m/n/10.95 dows ';'-separated) spec-i-fied in en-vi-ron-ment vari-able Overfull \hbox (105.20361pt too wide) in paragraph at lines 17634--17638 []\OML/ztmcm/m/it/10.95 ; ifithasnodirname\OT1/ztmcm/m/n/10.95 ; \OML/ztmcm/m/i t/10.95 set[]todirnameotherwise:Sets[]totheemptystringif[]couldnotbefoundin$\OT 1/cmtt/m/n/10.95 env\OT1/ptm/m/n/10.95 . Underfull \hbox (badness 5091) in paragraph at lines 17663--17665 []\OT1/ptm/m/n/10.95 Return the (es-ti-mated) to-tal size of all files given in \OT1/cmtt/m/n/10.95 filenames\OT1/ptm/m/n/10.95 . Uses Overfull \hbox (344.88547pt too wide) in paragraph at lines 17695--17698 []\OT1/ptm/m/n/10.95 Find reg-u-lar ex-e-cutable \OT1/cmtt/m/n/10.95 file \OT1/ ptm/m/n/10.95 in $\OML/ztmcm/m/it/10.95 PATH; ifithasnodirname\OT1/ztmcm/m/n/10 .95 ; \OML/ztmcm/m/it/10.95 set[]todirnameotherwise:Sets[]totheemptystringifreg ularexecutable[]couldnotbefoundin$\OT1/ptm/m/n/10.95 PATH. [222] [223] [224] Underfull \hbox (badness 7397) in paragraph at lines 17846--17849 []\OT1/ptm/m/n/10.95 Function to pro-cess a chain. \OT1/cmtt/m/n/10.95 frags \O T1/ptm/m/n/10.95 is an ar-ray of \OT1/cmtt/m/n/10.95 GtFragment\OT1/ptm/m/n/10. 95 s, of Underfull \hbox (badness 3803) in paragraph at lines 17846--17849 \OT1/ptm/m/n/10.95 size \OT1/cmtt/m/n/10.95 num[]of[]fragments\OT1/ptm/m/n/10.9 5 . \OT1/cmtt/m/n/10.95 max[]gap[]width \OT1/ptm/m/n/10.95 and \OT1/cmtt/m/n/10 .95 cpinfo \OT1/ptm/m/n/10.95 are passed from the Underfull \hbox (badness 1509) in paragraph at lines 17864--17869 []\OT1/ptm/m/n/10.95 Perform global chain-ing with over-laps of \OT1/cmtt/m/n/1 0.95 num[]of[]fragments \OT1/ptm/m/n/10.95 many \OT1/cmtt/m/n/10.95 fragments Underfull \hbox (badness 1509) in paragraph at lines 17886--17893 []\OT1/ptm/m/n/10.95 Perform global chain-ing with over-laps of \OT1/cmtt/m/n/1 0.95 num[]of[]fragments \OT1/ptm/m/n/10.95 many \OT1/cmtt/m/n/10.95 fragments [225] [226] [227] [228] [229] [230] [231] [232] Underfull \hbox (badness 2478) in paragraph at lines 18608--18618 []\OT1/ptm/m/n/10.95 This mod-ule im-ple-ments the func-tion \OT1/cmtt/m/n/10.9 5 gt[]basename() \OT1/ptm/m/n/10.95 ac-cord-ing to the spec-i- [233] [234] [235] Underfull \hbox (badness 10000) in paragraph at lines 18791--18793 []\OT1/ptm/m/n/10.95 Like $\OML/ztmcm/m/it/10.95 <$\OT1/ptm/m/n/10.95 qsort(3)$ \OML/ztmcm/m/it/10.95 >$\OT1/ptm/m/n/10.95 , but al-lows an ad-di-tional \OT1/c mtt/m/n/10.95 data \OT1/ptm/m/n/10.95 pointer passed to the Underfull \hbox (badness 10000) in paragraph at lines 18831--18832 []\OT1/cmtt/m/n/10.95 void (GtOverflowHandlerFunc)(const char *src[]file, int s rc[]line, void Underfull \hbox (badness 10000) in paragraph at lines 18831--18832 [236] [237] [238] [239] Underfull \hbox (badness 10000) in paragraph at lines 19139--19140 [240] [241] [242] [243] [244] [245] [246] [247] [248]) [249] (./annotationsketch.aux) kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 0+540/600 --dpi 540 cmttb10 mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=0+540/600; nonstopmode; input cmttb10 This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/public/cm-mf-extra-bold/cmttb10.mf (/usr/share/texlive/texmf-dist/fonts/source/public/cm/cmbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/roman.mf (/usr/share/texlive/texmf-dist/fonts/source/public/cm/romanu.mf [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/romanl.mf [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/greeku.mf [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/romand.mf [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/romanp.mf [36] [38] [63] [15]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/romspl.mf [16] [17] [25] [26] [27] [28]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/romspu.mf [29] [30] [31]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/punct.mf [33] [14] [35] [37] [39] [40] [41] [42] [43] [44] [46] [47] [58] [59] [61] [64] [91] [93] [96]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/accent.mf [18] [19] [20] [21] [22] [23] [24] [94] [126] [127]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/romsub.mf (/usr/share/texlive/texmf-dist/fonts/source/public/cm/sym.mf [45] [12] [11] [60] [62] [95] [92] [124] [123] [125] [34]) [13] [32]) ) ) Font metrics written on cmttb10.tfm. Output written on cmttb10.540gf (128 characters, 17840 bytes). Transcript written on cmttb10.log. mktexpk: /build/genometools-1.6.2+ds/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/public/cm-mf-extra-bold/cmttb10.540pk: successfully generated. LaTeX Font Warning: Some font shapes were not available, defaults substituted. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `annotationsketch.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information) kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tctt0800 mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tctt0800 This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tctt0800.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tctt.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [27] [29]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txgen.mf Ok [100] [109] [98] [99] [108]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf Ok [13] [18] [21] [22] [23] [24] [25] [26] [28] [31] [32] [36] [39] [44] [45] [46] [42] [47] [60] [61] [62] [77] [79] [87] [110] [91] [93] [94] [95] [96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [171] [172] [173] [174] [175] [177] [176] [180] [181] [182] [183] [184] [187] [191] [214] [246]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf Ok [185] [178] [179] [170] [186]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf Ok [188] [189] [190]) ) ) ) Font metrics written on tctt0800.tfm. 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Transcript written on tctt0800.log. mktexpk: /build/genometools-1.6.2+ds/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/tctt0800.600pk: successfully generated. kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+264/600 --dpi 864 cmttb10 mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+264/600; nonstopmode; input cmttb10 This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/public/cm-mf-extra-bold/cmttb10.mf (/usr/share/texlive/texmf-dist/fonts/source/public/cm/cmbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/roman.mf (/usr/share/texlive/texmf-dist/fonts/source/public/cm/romanu.mf [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/romanl.mf [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/greeku.mf [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/romand.mf [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/romanp.mf [36] [38] [63] [15]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/romspl.mf [16] [17] [25] [26] [27] [28]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/romspu.mf [29] [30] [31]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/punct.mf [33] [14] [35] [37] [39] [40] [41] [42] [43] [44] [46] [47] [58] [59] [61] [64] [91] [93] [96]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/accent.mf [18] [19] [20] [21] [22] [23] [24] [94] [126] [127]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/romsub.mf (/usr/share/texlive/texmf-dist/fonts/source/public/cm/sym.mf [45] [12] [11] [60] [62] [95] [92] [124] [123] [125] [34]) [13] [32]) ) ) Font metrics written on cmttb10.tfm. 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Transcript written on cmttb10.log. mktexpk: /build/genometools-1.6.2+ds/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/public/cm-mf-extra-bold/cmttb10.864pk: successfully generated. kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 0+480/600 --dpi 480 cmttb10 mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=0+480/600; nonstopmode; input cmttb10 This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/public/cm-mf-extra-bold/cmttb10.mf (/usr/share/texlive/texmf-dist/fonts/source/public/cm/cmbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/roman.mf (/usr/share/texlive/texmf-dist/fonts/source/public/cm/romanu.mf [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/romanl.mf [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/greeku.mf [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/romand.mf [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/romanp.mf [36] [38] [63] [15]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/romspl.mf [16] [17] [25] [26] [27] [28]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/romspu.mf [29] [30] [31]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/punct.mf [33] [14] [35] [37] [39] [40] [41] [42] [43] [44] [46] [47] [58] [59] [61] [64] [91] [93] [96]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/accent.mf [18] [19] [20] [21] [22] [23] [24] [94] [126] [127]) (/usr/share/texlive/texmf-dist/fonts/source/public/cm/romsub.mf (/usr/share/texlive/texmf-dist/fonts/source/public/cm/sym.mf [45] [12] [11] [60] [62] [95] [92] [124] [123] [125] [34]) [13] [32]) ) ) Font metrics written on cmttb10.tfm. Output written on cmttb10.480gf (128 characters, 15944 bytes). Transcript written on cmttb10.log. mktexpk: /build/genometools-1.6.2+ds/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/public/cm-mf-extra-bold/cmttb10.480pk: successfully generated. {/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} Output written on annotationsketch.pdf (249 pages, 1200431 bytes). Transcript written on annotationsketch.log. mv annotationsketch.aux annotationsketch-pdf.aux test -e annotationsketch-pdf.aux && mv annotationsketch-pdf.aux annotationsketch.aux bibtex annotationsketch This is BibTeX, Version 0.99d (TeX Live 2022/Debian) The top-level auxiliary file: annotationsketch.aux I found no \citation commands---while reading file annotationsketch.aux I found no \bibdata command---while reading file annotationsketch.aux I found no \bibstyle command---while reading file annotationsketch.aux (There were 3 error messages) make[3]: [Makefile:33: annotationsketch-pdf.bbl] Error 2 (ignored) test -e annotationsketch-pdf.bbl || touch annotationsketch-pdf.bbl diff annotationsketch-pdf.bbl annotationsketch.bbl || mv annotationsketch.bbl annotationsketch-pdf.bbl && rm -f annotationsketch.bbl mv annotationsketch.aux annotationsketch-pdf.aux test -e annotationsketch-pdf.aux && mv annotationsketch-pdf.aux annotationsketch.aux test -e annotationsketch-pdf.bbl && mv annotationsketch-pdf.bbl annotationsketch.bbl pdflatex annotationsketch.tex faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./annotationsketch.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrreprt.cls Document Class: scrreprt 2022/10/12 v3.38 KOMA-Script document class (report) (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrkbase.sty (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrbase.sty (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrlfile.sty (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrlfile-hook.sty (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrlogo.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty))) (/usr/share/texlive/texmf-dist/tex/latex/koma-script/tocbasic.sty) (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrsize11pt.clo) (/usr/share/texlive/texmf-dist/tex/latex/koma-script/typearea.sty)) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def) (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty))) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/mathptmx.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/bold-extra/bold-extra.sty) (/usr/share/texlive/texmf-dist/tex/latex/caption/caption.sty (/usr/share/texlive/texmf-dist/tex/latex/caption/caption3.sty (/usr/share/texlive/texmf-dist/tex/latex/caption/caption-koma.sto))) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./annotationsketch.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (./annotationsketch.out) (./annotationsketch.out) (/usr/share/texlive/texmf-dist/tex/latex/bookmark/bookmark.sty (/usr/share/texlive/texmf-dist/tex/latex/bookmark/bkm-pdftex.def)) LaTeX Font Warning: Font shape `OT1/cmss/bx/it' undefined (Font) using `OT1/cmss/bx/n' instead on input line 58. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ztmcm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omlztmcm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsztmcm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omxztmcm.fd) [1{/var/lib/texmf/ fonts/map/pdftex/updmap/pdftex.map}] (./annotationsketch.toc) [2] chapter 1. Class scrreprt Warning: \float@addtolists detected! (scrreprt) Implementation of \float@addtolist became (scrreprt) deprecated in KOMA-Script v3.01 2008/11/14 and (scrreprt) has been replaced by several more flexible (scrreprt) features of package `tocbasic`. (scrreprt) Since Version 3.12 support for deprecated (scrreprt) \float@addtolist interface has been (scrreprt) restricted to only some of the KOMA-Script (scrreprt) features and been removed from others. 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[3] [4 <../../www/genometools.org/htdocs/images/dataflow.pdf>] [5 <../../www/ge nometools.org/htdocs/images/gfftree.pdf> <../../www/genometools.org/htdocs/imag es/diagram.pdf pdfTeX warning: /usr/bin/pdflatex (file ../../www/genometools.org/htdocs/images /diagram.pdf): PDF inclusion: multiple pdfs with page group included in a singl e page >] [6 <../../www/genometools.org/htdocs/images/collapse_types.pdf>] [7 <../../w ww/genometools.org/htdocs/images/cnn_large.png>] [8 <../../www/genometools.org/ htdocs/images/callbacks.png>] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [9] (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty) [10 <../../www/ genometools.org/htdocs/images/example_nocollapse_noselect.png>] (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang2.sty) [11 <../../www/ genometools.org/htdocs/images/example_strandselect.png>] [12 <../../www/genomet ools.org/htdocs/images/example_filterselect.png>] [13 <../../www/genometools.or g/htdocs/images/example_ct.png>] Overfull \hbox (4.75348pt too wide) in paragraph at lines 390--391 [][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][] Overfull \hbox (4.75348pt too wide) in paragraph at lines 392--393 [][][][][][][][][][][][][][][][][][][][][][][][][][] Overfull \hbox (4.75348pt too wide) in paragraph at lines 393--394 [][][][][][][][][][][][][][] Overfull \hbox (4.75348pt too wide) in paragraph at lines 395--396 [][][][][][][][][][][][][][][][][][] Overfull \hbox (4.75348pt too wide) in paragraph at lines 396--397 [][][][][][][][][][][][][][][][][][][][][][] Overfull \hbox (4.75348pt too wide) in paragraph at lines 398--399 [][][][][][][][][][][][][][][][][][][][][][][][][][] Overfull \hbox (4.75348pt too wide) in paragraph at lines 399--400 [][][][][][][][][][][][][][][][][][][][][][] [14] (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) (../../src/examples/sketch_parsed.c [15 <../../www/genometools.org/htdocs/image s/example_ct2.png>] [16 <../../www/genometools.org/htdocs/images/parsed.png>]) Overfull \hbox (37.5989pt too wide) in paragraph at lines 443--444 \OT1/ptm/m/n/10.95 the com-mand line \OT1/cmtt/m/n/10.95 gt gtscripts/sketch[]p arsed.lua \OT1/ptm/m/n/10.95 ) (../../gtscripts/sketch_parsed.lua [17]) (../../gtruby/sketch_parsed.rb (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [18]) (../../gtpython/sketch_parsed.py [19]) (../../src/examples/sketch_constructed.c [20 <../../www/genometools.org/htdocs/images/constructed.png>] [21]) Overfull \hbox (28.675pt too wide) in paragraph at lines 466--467 \OT1/ptm/m/n/10.95 run by the com-mand line \OT1/cmtt/m/n/10.95 gt gtscripts/sk etch[]constructed.lua \OT1/ptm/m/n/10.95 ) (../../gtscripts/sketch_constructed.lua [22]) (../../gtruby/sketch_constructed.rb [23]) (../../gtpython/sketch_constructed.py [24]) (./api_reference.tex [25] [26] [27] [28] [29] [30] [31] [32] [33] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd) [34] [35] [36] [37] [38] Underfull \hbox (badness 5563) in paragraph at lines 1260--1262 []\OT1/ptm/m/n/10.95 Set the size of \OT1/cmtt/m/n/10.95 array \OT1/ptm/m/n/10. 95 to \OT1/cmtt/m/n/10.95 size\OT1/ptm/m/n/10.95 . \OT1/cmtt/m/n/10.95 size \OT 1/ptm/m/n/10.95 must be smaller or equal than [39] [40] [41] [42] Overfull \hbox (7.61789pt too wide) in paragraph at lines 1401--1404 \OT1/ptm/m/n/10.95 Implements the \OT1/cmtt/m/n/10.95 GtNodeStream \OT1/ptm/m/n /10.95 in-ter-face. \OT1/cmtt/m/n/10.95 GtArrayOutStream \OT1/ptm/m/n/10.95 tak es an ar-ray of \OT1/cmtt/m/n/10.95 GtGenomeNodes [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] Overfull \hbox (33.39326pt too wide) in paragraph at lines 2616--2618 \OT1/cmtt/m/n/10.95 GtCDSVisitor \OT1/ptm/m/n/10.95 is a \OT1/cmtt/m/n/10.95 Gt NodeVisitor \OT1/ptm/m/n/10.95 that adds CDS fea-tures for the longest ORFs in a \OT1/cmtt/m/n/10.95 GtFeatureNode\OT1/ptm/m/n/10.95 . Overfull \hbox (10.6532pt too wide) in paragraph at lines 2649--2650 [][][][][][][] Overfull \hbox (27.66315pt too wide) in paragraph at lines 2651--2652 [][][][][][][] Underfull \hbox (badness 2922) in paragraph at lines 2656--2658 []\OT1/ptm/m/n/10.95 Sets \OT1/cmtt/m/n/10.95 region[]mapping \OT1/ptm/m/n/10.9 5 to be the re-gion map-ping spec-i-fy-ing the se-quence for [55] [56] [57] Overfull \hbox (16.32318pt too wide) in paragraph at lines 2835--2836 [][][][][][][] [58] [59] [60] [61] [62] [63] Overfull \hbox (10.6532pt too wide) in paragraph at lines 3270--3271 [][][][][][] Overfull \hbox (33.33313pt too wide) in paragraph at lines 3272--3273 [][][][][][] Overfull \hbox (27.66315pt too wide) in paragraph at lines 3274--3275 [][][][][][] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] Underfull \hbox (badness 3039) in paragraph at lines 4744--4749 []\OT1/ptm/m/n/10.95 Enables sup-port for loss-less re-pro-duc-tion of the orig -i-nal se-quence, re-gard-less Underfull \hbox (badness 1655) in paragraph at lines 4744--4749 \OT1/ptm/m/n/10.95 of al-pha-bet trans-for-ma-tions that may ap-ply. En-coded s e-quences cre-ated with- Underfull \hbox (badness 2359) in paragraph at lines 4744--4749 \OT1/ptm/m/n/10.95 out this sup-port will not be able to be loaded via a \OT1/c mtt/m/n/10.95 GtEncseqLoader \OT1/ptm/m/n/10.95 with [78] [79] [80] [81] [82] [83] [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 5425--5427 []\OT1/ptm/m/n/10.95 Reinitializes the given \OT1/cmtt/m/n/10.95 esr \OT1/ptm/m /n/10.95 with the val-ues as de-scribed in [86] [87] [88] [89] Overfull \hbox (44.6731pt too wide) in paragraph at lines 5926--5927 [][][][][][][] [90] [91] [92] Overfull \hbox (53.83537pt too wide) in paragraph at lines 6022--6041 \OT1/ptm/m/n/10.95 GFF3 with the \OT1/cmtt/m/n/10.95 Parent \OT1/ptm/m/n/10.95 and \OT1/cmtt/m/n/10.95 ID \OT1/ptm/m/n/10.95 at-tributes) are re-al-ized in th e C API with the \OT1/cmtt/m/n/10.95 gt[]feature[]node[]add[]child() [93] Underfull \hbox (badness 10000) in paragraph at lines 6427--6430 []\OT1/ptm/m/n/10.95 Delivers the key (in \OT1/cmtt/m/n/10.95 attr[]name\OT1/pt m/m/n/10.95 )and value (in \OT1/cmtt/m/n/10.95 attr[]value\OT1/ptm/m/n/10.95 ) of an at- Underfull \hbox (badness 8094) in paragraph at lines 6427--6430 \OT1/ptm/m/n/10.95 tribute. The \OT1/cmtt/m/n/10.95 data \OT1/ptm/m/n/10.95 pa- ram-e-ter car-ries over ar-bi-trary user data from the Overfull \hbox (4.98322pt too wide) in paragraph at lines 6492--6493 [][][][][][][] [94] [95] [96] [97] [98] Overfull \hbox (10.6532pt too wide) in paragraph at lines 6657--6658 [][][][][][][] Overfull \hbox (27.66315pt too wide) in paragraph at lines 6671--6672 [][][][][][][] Overfull \hbox (39.00311pt too wide) in paragraph at lines 6685--6686 [][][][][][][] [99] Underfull \hbox (badness 1509) in paragraph at lines 6721--6724 \OT1/cmtt/m/n/10.95 fi\OT1/ptm/m/n/10.95 . Note: The \OT1/cmtt/m/n/10.95 GtFeat ureStream \OT1/ptm/m/n/10.95 class is now dep-re-cated. Please use the [100] Underfull \hbox (badness 10000) in paragraph at lines 6881--6884 []\OT1/ptm/m/n/10.95 Returns \OT1/cmtt/m/n/10.95 GT[]FILE[]MODE[]GZIP \OT1/ptm/ m/n/10.95 if file with \OT1/cmtt/m/n/10.95 path \OT1/ptm/m/n/10.95 ends with '. gz', [101] [102] Overfull \hbox (44.6731pt too wide) in paragraph at lines 7052--7053 [][][][][][][] Overfull \hbox (44.6731pt too wide) in paragraph at lines 7066--7067 [][][][][][][] Overfull \hbox (44.6731pt too wide) in paragraph at lines 7080--7081 [][][][][][][] Overfull \hbox (44.6731pt too wide) in paragraph at lines 7093--7094 [][][][][][][] [103] [104] Underfull \hbox (badness 4108) in paragraph at lines 7206--7209 []\OT1/ptm/m/n/10.95 Return a new $\OML/ztmcm/m/it/10.95 <$\OT1/ptm/m/n/10.95 G tGFF3Parser$\OML/ztmcm/m/it/10.95 >$ \OT1/ptm/m/n/10.95 ob-ject with op-tional \OT1/cmtt/m/n/10.95 type[]checker\OT1/ptm/m/n/10.95 . If a Overfull \hbox (44.6731pt too wide) in paragraph at lines 7244--7245 [][][][][][][] [105] [106] [107] [108] Underfull \hbox (badness 1424) in paragraph at lines 7636--7638 []\OT1/ptm/m/n/10.95 Compare \OT1/cmtt/m/n/10.95 genome[]node[]a \OT1/ptm/m/n/1 0.95 with \OT1/cmtt/m/n/10.95 genome[]node[]b \OT1/ptm/m/n/10.95 and re-turn th e re-sult (sim-i-lar to [109] [110] [111] [112] [113] [114] [115] [116] [117] Underfull \hbox (badness 2875) in paragraph at lines 8410--8413 []\OT1/ptm/m/n/10.95 Iterate over \OT1/cmtt/m/n/10.95 hashmap \OT1/ptm/m/n/10.9 5 in ei-ther al-pha-bet-i-cal or-der (if \OT1/cmtt/m/n/10.95 GtHashType \OT1/pt m/m/n/10.95 was spec-i- Underfull \hbox (badness 1762) in paragraph at lines 8410--8413 \OT1/ptm/m/n/10.95 fied as \OT1/cmtt/m/n/10.95 GT[]HASH[]STRING\OT1/ptm/m/n/10. 95 ) or nu-mer-i-cal or-der (if \OT1/cmtt/m/n/10.95 GtHashType \OT1/ptm/m/n/10. 95 was spec-i-fied as [118] [119] [120] Overfull \hbox (1.94502pt too wide) in paragraph at lines 8543--8545 \OT1/ptm/m/n/10.95 Implements the \OT1/cmtt/m/n/10.95 GtNodeStream \OT1/ptm/m/n /10.95 in-ter-face. A \OT1/cmtt/m/n/10.95 GtInterFeatureStream \OT1/ptm/m/n/10. 95 in-serts new fea-ture nodes [121] [122] [123] [124] [125] [126] [127] Underfull \hbox (badness 1596) in paragraph at lines 9213--9216 \OT1/ptm/m/n/10.95 it re-trieves from its \OT1/cmtt/m/n/10.95 in[]stream \OT1/p tm/m/n/10.95 to ``reg-u-lar'' ones (with the help of the given [128] [129] [130] [131] [132] [133] Underfull \hbox (badness 1163) in paragraph at lines 9733--9736 []\OT1/ptm/m/n/10.95 Creates a new \OT1/cmtt/m/n/10.95 GtMatchOpen \OT1/ptm/m/n /10.95 ob-ject, stor-ing long val-ues \OT1/cmtt/m/n/10.95 weight \OT1/ptm/m/n/1 0.95 in ad-di-tion to [134] [135] [136] [137] [138] Underfull \hbox (badness 1655) in paragraph at lines 10101--10107 \OT1/ptm/m/n/10.95 (trans-fers own-er-ship to \OT1/cmtt/m/n/10.95 genome[]node\ OT1/ptm/m/n/10.95 ). 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This method is ba-si-cally a con-ve-nience method [139] [140] [141] [142] Underfull \hbox (badness 2856) in paragraph at lines 10407--10409 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10423--10425 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10440--10443 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10459--10463 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10477--10481 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10495--10497 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10512--10515 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10530--10533 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10549--10553 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10567--10569 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10584--10587 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption 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2856) in paragraph at lines 10655--10657 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10672--10675 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10691--10695 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10772--10776 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10792--10797 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10811--10813 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10826--10828 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 10000) in paragraph at lines 10843--10846 []\OT1/ptm/m/n/10.95 Return a \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10.95 w ith the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/cmtt/ m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10875--10877 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and [143] [144] [145] [146] [147] [148] [149] [150] Underfull \hbox (badness 1496) in paragraph at lines 11200--11202 []\OT1/ptm/m/n/10.95 Return the \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10.95 ob-ject if an op-tion named \OT1/cmtt/m/n/10.95 option[]string \OT1/ptm/m/n/10 .95 is present in Underfull \hbox (badness 5446) in paragraph at lines 11320--11322 []\OT1/ptm/m/n/10.95 The \OT1/cmtt/m/n/10.95 minimum \OT1/ptm/m/n/10.95 and \OT 1/cmtt/m/n/10.95 maximum \OT1/ptm/m/n/10.95 num-ber of ad-di-tional com-mand li ne ar-gu-ments [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] Overfull \hbox (37.97119pt too wide) in paragraph at lines 12243--12245 \OT1/ptm/m/n/10.95 This enum type de-fines the pos-si-ble reamodes, namely \OT1 /cmtt/m/n/10.95 GT[]READMODE[]FORWARD\OT1/ptm/m/n/10.95 , \OT1/cmtt/m/n/10.95 G T[]READMODE[]REVERSE\OT1/ptm/m/n/10.95 , Underfull \hbox (badness 2626) in paragraph at lines 12270--12273 []\OT1/ptm/m/n/10.95 Returns the \OT1/cmtt/m/n/10.95 GtReadmode \OT1/ptm/m/n/10 .95 for the de-scrip-tion \OT1/cmtt/m/n/10.95 string\OT1/ptm/m/n/10.95 , which must be one of [163] [164] Underfull \hbox (badness 2735) in paragraph at lines 12430--12433 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtRegionMapping \OT1/ptm/ m/n/10.95 ob-ject for the map-ping file with the given Underfull \hbox (badness 10000) in paragraph at lines 12446--12452 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtRegionMapping \OT1/ptm/ m/n/10.95 ob-ject for the se-quence files given in Underfull \hbox (badness 1189) in paragraph at lines 12446--12452 \OT1/cmtt/m/n/10.95 sequence[]filenames\OT1/ptm/m/n/10.95 . If \OT1/cmtt/m/n/10 .95 matchdesc \OT1/ptm/m/n/10.95 is \OT1/cmtt/m/n/10.95 true\OT1/ptm/m/n/10.95 , the se-quence de-scrip-tions from [165] Overfull \hbox (3.68733pt too wide) in paragraph at lines 12587--12589 \OT1/ptm/m/n/10.95 Implements the \OT1/cmtt/m/n/10.95 GtGenomeNode \OT1/ptm/m/n /10.95 in-ter-face. Re-gion nodes cor-re-spond to the $\OML/ztmcm/m/it/10.95 <$ \OT1/ptm/m/n/10.95 ##sequence-region$\OML/ztmcm/m/it/10.95 >$ [166] [167] [168] [169] [170] Overfull \vbox (13.10382pt too high) has occurred while \output is active [171] [172] [173] [174] Underfull \hbox (badness 2698) in paragraph at lines 13272--13274 []\OT1/ptm/m/n/10.95 Create a new \OT1/cmtt/m/n/10.95 GtSequenceNode* \OT1/ptm/ m/n/10.95 rep-re-sent-ing a FASTA en-try with the given Overfull \hbox (4.98322pt too wide) in paragraph at lines 13281--13282 [][][][][] Overfull \hbox (10.6532pt too wide) in paragraph at lines 13282--13283 [][][][][][][] Overfull \hbox (27.66315pt too wide) in paragraph at lines 13308--13309 [][][][][] Overfull \hbox (33.33313pt too wide) in paragraph at lines 13309--13310 [][][][][][][] [175] Overfull \hbox (58.46886pt too wide) in paragraph at lines 13348--13351 \OT1/ptm/m/n/10.95 Implements the \OT1/cmtt/m/n/10.95 GtNodeVisitor \OT1/ptm/m/ n/10.95 in-ter-face. Used with the \OT1/cmtt/m/n/10.95 GtVisitorStream \OT1/ptm /m/n/10.95 class, a \OT1/cmtt/m/n/10.95 GtSetSourceVisitor [176] [177] [178] Overfull \hbox (31.52028pt too wide) in paragraph at lines 13565--13568 \OT1/ptm/m/n/10.95 Implements the \OT1/cmtt/m/n/10.95 GtNodeStream \OT1/ptm/m/n /10.95 in-ter-face. A \OT1/cmtt/m/n/10.95 GtStatStream \OT1/ptm/m/n/10.95 gath- ers statis-tics about the \OT1/cmtt/m/n/10.95 GtGenomeNode Underfull \hbox (badness 3668) in paragraph at lines 13587--13595 \OT1/ptm/m/n/10.95 ment equals \OT1/cmtt/m/n/10.95 true\OT1/ptm/m/n/10.95 : \OT 1/cmtt/m/n/10.95 gene[]length[]distribution\OT1/ptm/m/n/10.95 , \OT1/cmtt/m/n/1 0.95 gene[]score[]distribution\OT1/ptm/m/n/10.95 , Underfull \hbox (badness 10000) in paragraph at lines 13587--13595 \OT1/cmtt/m/n/10.95 exon[]length[]distribution\OT1/ptm/m/n/10.95 , \OT1/cmtt/m/ n/10.95 exon[]number[]distribution\OT1/ptm/m/n/10.95 , [179] Underfull \hbox (badness 5667) in paragraph at lines 13824--13826 []\OT1/ptm/m/n/10.95 Set length of \OT1/cmtt/m/n/10.95 str \OT1/ptm/m/n/10.95 t o \OT1/cmtt/m/n/10.95 length\OT1/ptm/m/n/10.95 . \OT1/cmtt/m/n/10.95 length \OT 1/ptm/m/n/10.95 must be smaller or equal than [180] [181] [182] Underfull \hbox (badness 2564) in paragraph at lines 14071--14073 []\OT1/ptm/m/n/10.95 Set the size of \OT1/cmtt/m/n/10.95 str[]array \OT1/ptm/m/ n/10.95 to \OT1/cmtt/m/n/10.95 size\OT1/ptm/m/n/10.95 . \OT1/cmtt/m/n/10.95 siz e \OT1/ptm/m/n/10.95 must be smaller or equal than [183] [184] Overfull \hbox (21.75429pt too wide) in paragraph at lines 14167--14170 \OT1/ptm/m/n/10.95 This enum type de-fines the pos-si-ble strands. The fol-low- ing strands are de-fined: \OT1/cmtt/m/n/10.95 GT[]STRAND[]FORWARD\OT1/ptm/m/n/1 0.95 , Underfull \hbox (badness 10000) in paragraph at lines 14193--14195 []\OT1/ptm/m/n/10.95 Map \OT1/cmtt/m/n/10.95 strand[]char \OT1/ptm/m/n/10.95 to the cor-re-spond-ing strand enum type. Re-turns [185] [186] [187] [188] [189] [190] [191] Overfull \hbox (83.5338pt too wide) in paragraph at lines 14815--14821 \OT1/cmtt/m/n/10.95 cairo[]t \OT1/ptm/m/n/10.95 and which should be used later via a \OT1/cmtt/m/n/10.95 GtCanvasCairoContext\OT1/ptm/m/n/10.95 , cre-ate a \O T1/cmtt/m/n/10.95 GtTextWidthCalculatorCairo [192] Underfull \hbox (badness 3168) in paragraph at lines 14967--14971 []\OT1/ptm/m/n/10.95 Output the cur-rent state of \OT1/cmtt/m/n/10.95 timer \OT 1/ptm/m/n/10.95 in the for-mat ""GT[]WD".pointer \OT1/cmtt/m/n/10.95 fp \OT1/pt m/m/n/10.95 (see Underfull \hbox (badness 10000) in paragraph at lines 15028--15032 []\OT1/ptm/m/n/10.95 Output the cur-rent state of \OT1/cmtt/m/n/10.95 timer \OT 1/ptm/m/n/10.95 on \OT1/cmtt/m/n/10.95 fp \OT1/ptm/m/n/10.95 since the last cal l of Underfull \hbox (badness 1292) in paragraph at lines 15028--15032 \OT1/cmtt/m/n/10.95 gt[]timer[]show[]progress() \OT1/ptm/m/n/10.95 or the last start of \OT1/cmtt/m/n/10.95 timer\OT1/ptm/m/n/10.95 , along with the cur-rent [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] Underfull \hbox (badness 10000) in paragraph at lines 16219--16220 Underfull \hbox (badness 10000) in paragraph at lines 16231--16232 [208] [209] [210] [211] [212] [213] [214] Underfull \hbox (badness 3364) in paragraph at lines 16926--16931 []\OT1/ptm/m/n/10.95 Print a fasta en-try with op-tional \OT1/cmtt/m/n/10.95 de scription \OT1/ptm/m/n/10.95 and manda-tory \OT1/cmtt/m/n/10.95 sequence \OT1/p tm/m/n/10.95 to Underfull \hbox (badness 3364) in paragraph at lines 16964--16969 []\OT1/ptm/m/n/10.95 Print a fasta en-try with op-tional \OT1/cmtt/m/n/10.95 de scription \OT1/ptm/m/n/10.95 and manda-tory \OT1/cmtt/m/n/10.95 sequence \OT1/p tm/m/n/10.95 to [215] [216] [217] [218] [219] [220] [221] Overfull \hbox (183.05757pt too wide) in paragraph at lines 17618--17620 []\OT1/ptm/m/n/10.95 Find \OT1/cmtt/m/n/10.95 file \OT1/ptm/m/n/10.95 in $\OML/ ztmcm/m/it/10.95 PATH; ifithasnodirname\OT1/ztmcm/m/n/10.95 ; \OML/ztmcm/m/it/1 0.95 set[]todirnameotherwise:Sets[]totheemptystringif[]couldnotbefoundin$\OT1/p tm/m/n/10.95 PATH. Underfull \hbox (badness 10000) in paragraph at lines 17634--17638 []\OT1/ptm/m/n/10.95 Find \OT1/cmtt/m/n/10.95 file \OT1/ptm/m/n/10.95 in the ': '-separated di-rec-tory list (on Win- Underfull \hbox (badness 10000) in paragraph at lines 17634--17638 \OT1/ptm/m/n/10.95 dows ';'-separated) spec-i-fied in en-vi-ron-ment vari-able Overfull \hbox (105.20361pt too wide) in paragraph at lines 17634--17638 []\OML/ztmcm/m/it/10.95 ; ifithasnodirname\OT1/ztmcm/m/n/10.95 ; \OML/ztmcm/m/i t/10.95 set[]todirnameotherwise:Sets[]totheemptystringif[]couldnotbefoundin$\OT 1/cmtt/m/n/10.95 env\OT1/ptm/m/n/10.95 . Underfull \hbox (badness 5091) in paragraph at lines 17663--17665 []\OT1/ptm/m/n/10.95 Return the (es-ti-mated) to-tal size of all files given in \OT1/cmtt/m/n/10.95 filenames\OT1/ptm/m/n/10.95 . Uses Overfull \hbox (344.88547pt too wide) in paragraph at lines 17695--17698 []\OT1/ptm/m/n/10.95 Find reg-u-lar ex-e-cutable \OT1/cmtt/m/n/10.95 file \OT1/ ptm/m/n/10.95 in $\OML/ztmcm/m/it/10.95 PATH; ifithasnodirname\OT1/ztmcm/m/n/10 .95 ; \OML/ztmcm/m/it/10.95 set[]todirnameotherwise:Sets[]totheemptystringifreg ularexecutable[]couldnotbefoundin$\OT1/ptm/m/n/10.95 PATH. [222] [223] [224] Underfull \hbox (badness 7397) in paragraph at lines 17846--17849 []\OT1/ptm/m/n/10.95 Function to pro-cess a chain. \OT1/cmtt/m/n/10.95 frags \O T1/ptm/m/n/10.95 is an ar-ray of \OT1/cmtt/m/n/10.95 GtFragment\OT1/ptm/m/n/10. 95 s, of Underfull \hbox (badness 3803) in paragraph at lines 17846--17849 \OT1/ptm/m/n/10.95 size \OT1/cmtt/m/n/10.95 num[]of[]fragments\OT1/ptm/m/n/10.9 5 . \OT1/cmtt/m/n/10.95 max[]gap[]width \OT1/ptm/m/n/10.95 and \OT1/cmtt/m/n/10 .95 cpinfo \OT1/ptm/m/n/10.95 are passed from the Underfull \hbox (badness 1509) in paragraph at lines 17864--17869 []\OT1/ptm/m/n/10.95 Perform global chain-ing with over-laps of \OT1/cmtt/m/n/1 0.95 num[]of[]fragments \OT1/ptm/m/n/10.95 many \OT1/cmtt/m/n/10.95 fragments Underfull \hbox (badness 1509) in paragraph at lines 17886--17893 []\OT1/ptm/m/n/10.95 Perform global chain-ing with over-laps of \OT1/cmtt/m/n/1 0.95 num[]of[]fragments \OT1/ptm/m/n/10.95 many \OT1/cmtt/m/n/10.95 fragments [225] [226] [227] [228] [229] [230] [231] [232] Underfull \hbox (badness 2478) in paragraph at lines 18608--18618 []\OT1/ptm/m/n/10.95 This mod-ule im-ple-ments the func-tion \OT1/cmtt/m/n/10.9 5 gt[]basename() \OT1/ptm/m/n/10.95 ac-cord-ing to the spec-i- [233] [234] [235] Underfull \hbox (badness 10000) in paragraph at lines 18791--18793 []\OT1/ptm/m/n/10.95 Like $\OML/ztmcm/m/it/10.95 <$\OT1/ptm/m/n/10.95 qsort(3)$ \OML/ztmcm/m/it/10.95 >$\OT1/ptm/m/n/10.95 , but al-lows an ad-di-tional \OT1/c mtt/m/n/10.95 data \OT1/ptm/m/n/10.95 pointer passed to the Underfull \hbox (badness 10000) in paragraph at lines 18831--18832 []\OT1/cmtt/m/n/10.95 void (GtOverflowHandlerFunc)(const char *src[]file, int s rc[]line, void Underfull \hbox (badness 10000) in paragraph at lines 18831--18832 [236] [237] [238] [239] Underfull \hbox (badness 10000) in paragraph at lines 19139--19140 [240] [241] [242] [243] [244] [245] [246] [247] [248]) [249] (./annotationsketch.aux) LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information) {/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} Output written on annotationsketch.pdf (249 pages, 1206707 bytes). Transcript written on annotationsketch.log. pdflatex annotationsketch.tex faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ztmcm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omlztmcm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsztmcm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omxztmcm.fd) [1{/var/lib/texmf/ fonts/map/pdftex/updmap/pdftex.map}] (./annotationsketch.toc) [2] chapter 1. Class scrreprt Warning: \float@addtolists detected! (scrreprt) Implementation of \float@addtolist became (scrreprt) deprecated in KOMA-Script v3.01 2008/11/14 and (scrreprt) has been replaced by several more flexible (scrreprt) features of package `tocbasic`. (scrreprt) Since Version 3.12 support for deprecated (scrreprt) \float@addtolist interface has been (scrreprt) restricted to only some of the KOMA-Script (scrreprt) features and been removed from others. 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[3] [4 <../../www/genometools.org/htdocs/images/dataflow.pdf>] [5 <../../www/ge nometools.org/htdocs/images/gfftree.pdf> <../../www/genometools.org/htdocs/imag es/diagram.pdf pdfTeX warning: /usr/bin/pdflatex (file ../../www/genometools.org/htdocs/images /diagram.pdf): PDF inclusion: multiple pdfs with page group included in a singl e page >] [6 <../../www/genometools.org/htdocs/images/collapse_types.pdf>] [7 <../../w ww/genometools.org/htdocs/images/cnn_large.png>] [8 <../../www/genometools.org/ htdocs/images/callbacks.png>] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [9] (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty) [10 <../../www/ genometools.org/htdocs/images/example_nocollapse_noselect.png>] (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang2.sty) [11 <../../www/ genometools.org/htdocs/images/example_strandselect.png>] [12 <../../www/genomet ools.org/htdocs/images/example_filterselect.png>] [13 <../../www/genometools.or g/htdocs/images/example_ct.png>] Overfull \hbox (4.75348pt too wide) in paragraph at lines 390--391 [][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][][] Overfull \hbox (4.75348pt too wide) in paragraph at lines 392--393 [][][][][][][][][][][][][][][][][][][][][][][][][][] Overfull \hbox (4.75348pt too wide) in paragraph at lines 393--394 [][][][][][][][][][][][][][] Overfull \hbox (4.75348pt too wide) in paragraph at lines 395--396 [][][][][][][][][][][][][][][][][][] Overfull \hbox (4.75348pt too wide) in paragraph at lines 396--397 [][][][][][][][][][][][][][][][][][][][][][] Overfull \hbox (4.75348pt too wide) in paragraph at lines 398--399 [][][][][][][][][][][][][][][][][][][][][][][][][][] Overfull \hbox (4.75348pt too wide) in paragraph at lines 399--400 [][][][][][][][][][][][][][][][][][][][][][] [14] (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) (../../src/examples/sketch_parsed.c [15 <../../www/genometools.org/htdocs/image s/example_ct2.png>] [16 <../../www/genometools.org/htdocs/images/parsed.png>]) Overfull \hbox (37.5989pt too wide) in paragraph at lines 443--444 \OT1/ptm/m/n/10.95 the com-mand line \OT1/cmtt/m/n/10.95 gt gtscripts/sketch[]p arsed.lua \OT1/ptm/m/n/10.95 ) (../../gtscripts/sketch_parsed.lua [17]) (../../gtruby/sketch_parsed.rb (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [18]) (../../gtpython/sketch_parsed.py [19]) (../../src/examples/sketch_constructed.c [20 <../../www/genometools.org/htdocs/images/constructed.png>] [21]) Overfull \hbox (28.675pt too wide) in paragraph at lines 466--467 \OT1/ptm/m/n/10.95 run by the com-mand line \OT1/cmtt/m/n/10.95 gt gtscripts/sk etch[]constructed.lua \OT1/ptm/m/n/10.95 ) (../../gtscripts/sketch_constructed.lua [22]) (../../gtruby/sketch_constructed.rb [23]) (../../gtpython/sketch_constructed.py [24]) (./api_reference.tex [25] [26] [27] [28] [29] [30] [31] [32] [33] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd) [34] [35] [36] [37] [38] Underfull \hbox (badness 5563) in paragraph at lines 1260--1262 []\OT1/ptm/m/n/10.95 Set the size of \OT1/cmtt/m/n/10.95 array \OT1/ptm/m/n/10. 95 to \OT1/cmtt/m/n/10.95 size\OT1/ptm/m/n/10.95 . \OT1/cmtt/m/n/10.95 size \OT 1/ptm/m/n/10.95 must be smaller or equal than [39] [40] [41] [42] Overfull \hbox (7.61789pt too wide) in paragraph at lines 1401--1404 \OT1/ptm/m/n/10.95 Implements the \OT1/cmtt/m/n/10.95 GtNodeStream \OT1/ptm/m/n /10.95 in-ter-face. \OT1/cmtt/m/n/10.95 GtArrayOutStream \OT1/ptm/m/n/10.95 tak es an ar-ray of \OT1/cmtt/m/n/10.95 GtGenomeNodes [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] Overfull \hbox (33.39326pt too wide) in paragraph at lines 2616--2618 \OT1/cmtt/m/n/10.95 GtCDSVisitor \OT1/ptm/m/n/10.95 is a \OT1/cmtt/m/n/10.95 Gt NodeVisitor \OT1/ptm/m/n/10.95 that adds CDS fea-tures for the longest ORFs in a \OT1/cmtt/m/n/10.95 GtFeatureNode\OT1/ptm/m/n/10.95 . Overfull \hbox (10.6532pt too wide) in paragraph at lines 2649--2650 [][][][][][][] Overfull \hbox (27.66315pt too wide) in paragraph at lines 2651--2652 [][][][][][][] Underfull \hbox (badness 2922) in paragraph at lines 2656--2658 []\OT1/ptm/m/n/10.95 Sets \OT1/cmtt/m/n/10.95 region[]mapping \OT1/ptm/m/n/10.9 5 to be the re-gion map-ping spec-i-fy-ing the se-quence for [55] [56] [57] Overfull \hbox (16.32318pt too wide) in paragraph at lines 2835--2836 [][][][][][][] [58] [59] [60] [61] [62] [63] Overfull \hbox (10.6532pt too wide) in paragraph at lines 3270--3271 [][][][][][] Overfull \hbox (33.33313pt too wide) in paragraph at lines 3272--3273 [][][][][][] Overfull \hbox (27.66315pt too wide) in paragraph at lines 3274--3275 [][][][][][] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] Underfull \hbox (badness 3039) in paragraph at lines 4744--4749 []\OT1/ptm/m/n/10.95 Enables sup-port for loss-less re-pro-duc-tion of the orig -i-nal se-quence, re-gard-less Underfull \hbox (badness 1655) in paragraph at lines 4744--4749 \OT1/ptm/m/n/10.95 of al-pha-bet trans-for-ma-tions that may ap-ply. En-coded s e-quences cre-ated with- Underfull \hbox (badness 2359) in paragraph at lines 4744--4749 \OT1/ptm/m/n/10.95 out this sup-port will not be able to be loaded via a \OT1/c mtt/m/n/10.95 GtEncseqLoader \OT1/ptm/m/n/10.95 with [78] [79] [80] [81] [82] [83] [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 5425--5427 []\OT1/ptm/m/n/10.95 Reinitializes the given \OT1/cmtt/m/n/10.95 esr \OT1/ptm/m /n/10.95 with the val-ues as de-scribed in [86] [87] [88] [89] Overfull \hbox (44.6731pt too wide) in paragraph at lines 5926--5927 [][][][][][][] [90] [91] [92] Overfull \hbox (53.83537pt too wide) in paragraph at lines 6022--6041 \OT1/ptm/m/n/10.95 GFF3 with the \OT1/cmtt/m/n/10.95 Parent \OT1/ptm/m/n/10.95 and \OT1/cmtt/m/n/10.95 ID \OT1/ptm/m/n/10.95 at-tributes) are re-al-ized in th e C API with the \OT1/cmtt/m/n/10.95 gt[]feature[]node[]add[]child() [93] Underfull \hbox (badness 10000) in paragraph at lines 6427--6430 []\OT1/ptm/m/n/10.95 Delivers the key (in \OT1/cmtt/m/n/10.95 attr[]name\OT1/pt m/m/n/10.95 )and value (in \OT1/cmtt/m/n/10.95 attr[]value\OT1/ptm/m/n/10.95 ) of an at- Underfull \hbox (badness 8094) in paragraph at lines 6427--6430 \OT1/ptm/m/n/10.95 tribute. The \OT1/cmtt/m/n/10.95 data \OT1/ptm/m/n/10.95 pa- ram-e-ter car-ries over ar-bi-trary user data from the Overfull \hbox (4.98322pt too wide) in paragraph at lines 6492--6493 [][][][][][][] [94] [95] [96] [97] [98] Overfull \hbox (10.6532pt too wide) in paragraph at lines 6657--6658 [][][][][][][] Overfull \hbox (27.66315pt too wide) in paragraph at lines 6671--6672 [][][][][][][] Overfull \hbox (39.00311pt too wide) in paragraph at lines 6685--6686 [][][][][][][] [99] Underfull \hbox (badness 1509) in paragraph at lines 6721--6724 \OT1/cmtt/m/n/10.95 fi\OT1/ptm/m/n/10.95 . Note: The \OT1/cmtt/m/n/10.95 GtFeat ureStream \OT1/ptm/m/n/10.95 class is now dep-re-cated. Please use the [100] Underfull \hbox (badness 10000) in paragraph at lines 6881--6884 []\OT1/ptm/m/n/10.95 Returns \OT1/cmtt/m/n/10.95 GT[]FILE[]MODE[]GZIP \OT1/ptm/ m/n/10.95 if file with \OT1/cmtt/m/n/10.95 path \OT1/ptm/m/n/10.95 ends with '. gz', [101] [102] Overfull \hbox (44.6731pt too wide) in paragraph at lines 7052--7053 [][][][][][][] Overfull \hbox (44.6731pt too wide) in paragraph at lines 7066--7067 [][][][][][][] Overfull \hbox (44.6731pt too wide) in paragraph at lines 7080--7081 [][][][][][][] Overfull \hbox (44.6731pt too wide) in paragraph at lines 7093--7094 [][][][][][][] [103] [104] Underfull \hbox (badness 4108) in paragraph at lines 7206--7209 []\OT1/ptm/m/n/10.95 Return a new $\OML/ztmcm/m/it/10.95 <$\OT1/ptm/m/n/10.95 G tGFF3Parser$\OML/ztmcm/m/it/10.95 >$ \OT1/ptm/m/n/10.95 ob-ject with op-tional \OT1/cmtt/m/n/10.95 type[]checker\OT1/ptm/m/n/10.95 . If a Overfull \hbox (44.6731pt too wide) in paragraph at lines 7244--7245 [][][][][][][] [105] [106] [107] [108] Underfull \hbox (badness 1424) in paragraph at lines 7636--7638 []\OT1/ptm/m/n/10.95 Compare \OT1/cmtt/m/n/10.95 genome[]node[]a \OT1/ptm/m/n/1 0.95 with \OT1/cmtt/m/n/10.95 genome[]node[]b \OT1/ptm/m/n/10.95 and re-turn th e re-sult (sim-i-lar to [109] [110] [111] [112] [113] [114] [115] [116] [117] Underfull \hbox (badness 2875) in paragraph at lines 8410--8413 []\OT1/ptm/m/n/10.95 Iterate over \OT1/cmtt/m/n/10.95 hashmap \OT1/ptm/m/n/10.9 5 in ei-ther al-pha-bet-i-cal or-der (if \OT1/cmtt/m/n/10.95 GtHashType \OT1/pt m/m/n/10.95 was spec-i- Underfull \hbox (badness 1762) in paragraph at lines 8410--8413 \OT1/ptm/m/n/10.95 fied as \OT1/cmtt/m/n/10.95 GT[]HASH[]STRING\OT1/ptm/m/n/10. 95 ) or nu-mer-i-cal or-der (if \OT1/cmtt/m/n/10.95 GtHashType \OT1/ptm/m/n/10. 95 was spec-i-fied as [118] [119] [120] Overfull \hbox (1.94502pt too wide) in paragraph at lines 8543--8545 \OT1/ptm/m/n/10.95 Implements the \OT1/cmtt/m/n/10.95 GtNodeStream \OT1/ptm/m/n /10.95 in-ter-face. A \OT1/cmtt/m/n/10.95 GtInterFeatureStream \OT1/ptm/m/n/10. 95 in-serts new fea-ture nodes [121] [122] [123] [124] [125] [126] [127] Underfull \hbox (badness 1596) in paragraph at lines 9213--9216 \OT1/ptm/m/n/10.95 it re-trieves from its \OT1/cmtt/m/n/10.95 in[]stream \OT1/p tm/m/n/10.95 to ``reg-u-lar'' ones (with the help of the given [128] [129] [130] [131] [132] [133] Underfull \hbox (badness 1163) in paragraph at lines 9733--9736 []\OT1/ptm/m/n/10.95 Creates a new \OT1/cmtt/m/n/10.95 GtMatchOpen \OT1/ptm/m/n /10.95 ob-ject, stor-ing long val-ues \OT1/cmtt/m/n/10.95 weight \OT1/ptm/m/n/1 0.95 in ad-di-tion to [134] [135] [136] [137] [138] Underfull \hbox (badness 1655) in paragraph at lines 10101--10107 \OT1/ptm/m/n/10.95 (trans-fers own-er-ship to \OT1/cmtt/m/n/10.95 genome[]node\ OT1/ptm/m/n/10.95 ). 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This method is ba-si-cally a con-ve-nience method [139] [140] [141] [142] Underfull \hbox (badness 2856) in paragraph at lines 10407--10409 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10423--10425 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10440--10443 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10459--10463 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10477--10481 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10495--10497 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10512--10515 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10530--10533 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10549--10553 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10567--10569 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10584--10587 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption 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2856) in paragraph at lines 10655--10657 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10672--10675 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10691--10695 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10772--10776 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10792--10797 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10811--10813 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10826--10828 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 10000) in paragraph at lines 10843--10846 []\OT1/ptm/m/n/10.95 Return a \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10.95 w ith the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/cmtt/ m/n/10.95 description\OT1/ptm/m/n/10.95 , and Underfull \hbox (badness 2856) in paragraph at lines 10875--10877 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10. 95 with the given \OT1/cmtt/m/n/10.95 option[]string\OT1/ptm/m/n/10.95 , \OT1/c mtt/m/n/10.95 description\OT1/ptm/m/n/10.95 , and [143] [144] [145] [146] [147] [148] [149] [150] Underfull \hbox (badness 1496) in paragraph at lines 11200--11202 []\OT1/ptm/m/n/10.95 Return the \OT1/cmtt/m/n/10.95 GtOption \OT1/ptm/m/n/10.95 ob-ject if an op-tion named \OT1/cmtt/m/n/10.95 option[]string \OT1/ptm/m/n/10 .95 is present in Underfull \hbox (badness 5446) in paragraph at lines 11320--11322 []\OT1/ptm/m/n/10.95 The \OT1/cmtt/m/n/10.95 minimum \OT1/ptm/m/n/10.95 and \OT 1/cmtt/m/n/10.95 maximum \OT1/ptm/m/n/10.95 num-ber of ad-di-tional com-mand li ne ar-gu-ments [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] Overfull \hbox (37.97119pt too wide) in paragraph at lines 12243--12245 \OT1/ptm/m/n/10.95 This enum type de-fines the pos-si-ble reamodes, namely \OT1 /cmtt/m/n/10.95 GT[]READMODE[]FORWARD\OT1/ptm/m/n/10.95 , \OT1/cmtt/m/n/10.95 G T[]READMODE[]REVERSE\OT1/ptm/m/n/10.95 , Underfull \hbox (badness 2626) in paragraph at lines 12270--12273 []\OT1/ptm/m/n/10.95 Returns the \OT1/cmtt/m/n/10.95 GtReadmode \OT1/ptm/m/n/10 .95 for the de-scrip-tion \OT1/cmtt/m/n/10.95 string\OT1/ptm/m/n/10.95 , which must be one of [163] [164] Underfull \hbox (badness 2735) in paragraph at lines 12430--12433 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtRegionMapping \OT1/ptm/ m/n/10.95 ob-ject for the map-ping file with the given Underfull \hbox (badness 10000) in paragraph at lines 12446--12452 []\OT1/ptm/m/n/10.95 Return a new \OT1/cmtt/m/n/10.95 GtRegionMapping \OT1/ptm/ m/n/10.95 ob-ject for the se-quence files given in Underfull \hbox (badness 1189) in paragraph at lines 12446--12452 \OT1/cmtt/m/n/10.95 sequence[]filenames\OT1/ptm/m/n/10.95 . If \OT1/cmtt/m/n/10 .95 matchdesc \OT1/ptm/m/n/10.95 is \OT1/cmtt/m/n/10.95 true\OT1/ptm/m/n/10.95 , the se-quence de-scrip-tions from [165] Overfull \hbox (3.68733pt too wide) in paragraph at lines 12587--12589 \OT1/ptm/m/n/10.95 Implements the \OT1/cmtt/m/n/10.95 GtGenomeNode \OT1/ptm/m/n /10.95 in-ter-face. Re-gion nodes cor-re-spond to the $\OML/ztmcm/m/it/10.95 <$ \OT1/ptm/m/n/10.95 ##sequence-region$\OML/ztmcm/m/it/10.95 >$ [166] [167] [168] [169] [170] Overfull \vbox (13.10382pt too high) has occurred while \output is active [171] [172] [173] [174] Underfull \hbox (badness 2698) in paragraph at lines 13272--13274 []\OT1/ptm/m/n/10.95 Create a new \OT1/cmtt/m/n/10.95 GtSequenceNode* \OT1/ptm/ m/n/10.95 rep-re-sent-ing a FASTA en-try with the given Overfull \hbox (4.98322pt too wide) in paragraph at lines 13281--13282 [][][][][] Overfull \hbox (10.6532pt too wide) in paragraph at lines 13282--13283 [][][][][][][] Overfull \hbox (27.66315pt too wide) in paragraph at lines 13308--13309 [][][][][] Overfull \hbox (33.33313pt too wide) in paragraph at lines 13309--13310 [][][][][][][] [175] Overfull \hbox (58.46886pt too wide) in paragraph at lines 13348--13351 \OT1/ptm/m/n/10.95 Implements the \OT1/cmtt/m/n/10.95 GtNodeVisitor \OT1/ptm/m/ n/10.95 in-ter-face. Used with the \OT1/cmtt/m/n/10.95 GtVisitorStream \OT1/ptm /m/n/10.95 class, a \OT1/cmtt/m/n/10.95 GtSetSourceVisitor [176] [177] [178] Overfull \hbox (31.52028pt too wide) in paragraph at lines 13565--13568 \OT1/ptm/m/n/10.95 Implements the \OT1/cmtt/m/n/10.95 GtNodeStream \OT1/ptm/m/n /10.95 in-ter-face. A \OT1/cmtt/m/n/10.95 GtStatStream \OT1/ptm/m/n/10.95 gath- ers statis-tics about the \OT1/cmtt/m/n/10.95 GtGenomeNode Underfull \hbox (badness 3668) in paragraph at lines 13587--13595 \OT1/ptm/m/n/10.95 ment equals \OT1/cmtt/m/n/10.95 true\OT1/ptm/m/n/10.95 : \OT 1/cmtt/m/n/10.95 gene[]length[]distribution\OT1/ptm/m/n/10.95 , \OT1/cmtt/m/n/1 0.95 gene[]score[]distribution\OT1/ptm/m/n/10.95 , Underfull \hbox (badness 10000) in paragraph at lines 13587--13595 \OT1/cmtt/m/n/10.95 exon[]length[]distribution\OT1/ptm/m/n/10.95 , \OT1/cmtt/m/ n/10.95 exon[]number[]distribution\OT1/ptm/m/n/10.95 , [179] Underfull \hbox (badness 5667) in paragraph at lines 13824--13826 []\OT1/ptm/m/n/10.95 Set length of \OT1/cmtt/m/n/10.95 str \OT1/ptm/m/n/10.95 t o \OT1/cmtt/m/n/10.95 length\OT1/ptm/m/n/10.95 . \OT1/cmtt/m/n/10.95 length \OT 1/ptm/m/n/10.95 must be smaller or equal than [180] [181] [182] Underfull \hbox (badness 2564) in paragraph at lines 14071--14073 []\OT1/ptm/m/n/10.95 Set the size of \OT1/cmtt/m/n/10.95 str[]array \OT1/ptm/m/ n/10.95 to \OT1/cmtt/m/n/10.95 size\OT1/ptm/m/n/10.95 . \OT1/cmtt/m/n/10.95 siz e \OT1/ptm/m/n/10.95 must be smaller or equal than [183] [184] Overfull \hbox (21.75429pt too wide) in paragraph at lines 14167--14170 \OT1/ptm/m/n/10.95 This enum type de-fines the pos-si-ble strands. The fol-low- ing strands are de-fined: \OT1/cmtt/m/n/10.95 GT[]STRAND[]FORWARD\OT1/ptm/m/n/1 0.95 , Underfull \hbox (badness 10000) in paragraph at lines 14193--14195 []\OT1/ptm/m/n/10.95 Map \OT1/cmtt/m/n/10.95 strand[]char \OT1/ptm/m/n/10.95 to the cor-re-spond-ing strand enum type. Re-turns [185] [186] [187] [188] [189] [190] [191] Overfull \hbox (83.5338pt too wide) in paragraph at lines 14815--14821 \OT1/cmtt/m/n/10.95 cairo[]t \OT1/ptm/m/n/10.95 and which should be used later via a \OT1/cmtt/m/n/10.95 GtCanvasCairoContext\OT1/ptm/m/n/10.95 , cre-ate a \O T1/cmtt/m/n/10.95 GtTextWidthCalculatorCairo [192] Underfull \hbox (badness 3168) in paragraph at lines 14967--14971 []\OT1/ptm/m/n/10.95 Output the cur-rent state of \OT1/cmtt/m/n/10.95 timer \OT 1/ptm/m/n/10.95 in the for-mat ""GT[]WD".pointer \OT1/cmtt/m/n/10.95 fp \OT1/pt m/m/n/10.95 (see Underfull \hbox (badness 10000) in paragraph at lines 15028--15032 []\OT1/ptm/m/n/10.95 Output the cur-rent state of \OT1/cmtt/m/n/10.95 timer \OT 1/ptm/m/n/10.95 on \OT1/cmtt/m/n/10.95 fp \OT1/ptm/m/n/10.95 since the last cal l of Underfull \hbox (badness 1292) in paragraph at lines 15028--15032 \OT1/cmtt/m/n/10.95 gt[]timer[]show[]progress() \OT1/ptm/m/n/10.95 or the last start of \OT1/cmtt/m/n/10.95 timer\OT1/ptm/m/n/10.95 , along with the cur-rent [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] Underfull \hbox (badness 10000) in paragraph at lines 16219--16220 Underfull \hbox (badness 10000) in paragraph at lines 16231--16232 [208] [209] [210] [211] [212] [213] [214] Underfull \hbox (badness 3364) in paragraph at lines 16926--16931 []\OT1/ptm/m/n/10.95 Print a fasta en-try with op-tional \OT1/cmtt/m/n/10.95 de scription \OT1/ptm/m/n/10.95 and manda-tory \OT1/cmtt/m/n/10.95 sequence \OT1/p tm/m/n/10.95 to Underfull \hbox (badness 3364) in paragraph at lines 16964--16969 []\OT1/ptm/m/n/10.95 Print a fasta en-try with op-tional \OT1/cmtt/m/n/10.95 de scription \OT1/ptm/m/n/10.95 and manda-tory \OT1/cmtt/m/n/10.95 sequence \OT1/p tm/m/n/10.95 to [215] [216] [217] [218] [219] [220] [221] Overfull \hbox (183.05757pt too wide) in paragraph at lines 17618--17620 []\OT1/ptm/m/n/10.95 Find \OT1/cmtt/m/n/10.95 file \OT1/ptm/m/n/10.95 in $\OML/ ztmcm/m/it/10.95 PATH; ifithasnodirname\OT1/ztmcm/m/n/10.95 ; \OML/ztmcm/m/it/1 0.95 set[]todirnameotherwise:Sets[]totheemptystringif[]couldnotbefoundin$\OT1/p tm/m/n/10.95 PATH. Underfull \hbox (badness 10000) in paragraph at lines 17634--17638 []\OT1/ptm/m/n/10.95 Find \OT1/cmtt/m/n/10.95 file \OT1/ptm/m/n/10.95 in the ': '-separated di-rec-tory list (on Win- Underfull \hbox (badness 10000) in paragraph at lines 17634--17638 \OT1/ptm/m/n/10.95 dows ';'-separated) spec-i-fied in en-vi-ron-ment vari-able Overfull \hbox (105.20361pt too wide) in paragraph at lines 17634--17638 []\OML/ztmcm/m/it/10.95 ; ifithasnodirname\OT1/ztmcm/m/n/10.95 ; \OML/ztmcm/m/i t/10.95 set[]todirnameotherwise:Sets[]totheemptystringif[]couldnotbefoundin$\OT 1/cmtt/m/n/10.95 env\OT1/ptm/m/n/10.95 . Underfull \hbox (badness 5091) in paragraph at lines 17663--17665 []\OT1/ptm/m/n/10.95 Return the (es-ti-mated) to-tal size of all files given in \OT1/cmtt/m/n/10.95 filenames\OT1/ptm/m/n/10.95 . Uses Overfull \hbox (344.88547pt too wide) in paragraph at lines 17695--17698 []\OT1/ptm/m/n/10.95 Find reg-u-lar ex-e-cutable \OT1/cmtt/m/n/10.95 file \OT1/ ptm/m/n/10.95 in $\OML/ztmcm/m/it/10.95 PATH; ifithasnodirname\OT1/ztmcm/m/n/10 .95 ; \OML/ztmcm/m/it/10.95 set[]todirnameotherwise:Sets[]totheemptystringifreg ularexecutable[]couldnotbefoundin$\OT1/ptm/m/n/10.95 PATH. [222] [223] [224] Underfull \hbox (badness 7397) in paragraph at lines 17846--17849 []\OT1/ptm/m/n/10.95 Function to pro-cess a chain. \OT1/cmtt/m/n/10.95 frags \O T1/ptm/m/n/10.95 is an ar-ray of \OT1/cmtt/m/n/10.95 GtFragment\OT1/ptm/m/n/10. 95 s, of Underfull \hbox (badness 3803) in paragraph at lines 17846--17849 \OT1/ptm/m/n/10.95 size \OT1/cmtt/m/n/10.95 num[]of[]fragments\OT1/ptm/m/n/10.9 5 . \OT1/cmtt/m/n/10.95 max[]gap[]width \OT1/ptm/m/n/10.95 and \OT1/cmtt/m/n/10 .95 cpinfo \OT1/ptm/m/n/10.95 are passed from the Underfull \hbox (badness 1509) in paragraph at lines 17864--17869 []\OT1/ptm/m/n/10.95 Perform global chain-ing with over-laps of \OT1/cmtt/m/n/1 0.95 num[]of[]fragments \OT1/ptm/m/n/10.95 many \OT1/cmtt/m/n/10.95 fragments Underfull \hbox (badness 1509) in paragraph at lines 17886--17893 []\OT1/ptm/m/n/10.95 Perform global chain-ing with over-laps of \OT1/cmtt/m/n/1 0.95 num[]of[]fragments \OT1/ptm/m/n/10.95 many \OT1/cmtt/m/n/10.95 fragments [225] [226] [227] [228] [229] [230] [231] [232] Underfull \hbox (badness 2478) in paragraph at lines 18608--18618 []\OT1/ptm/m/n/10.95 This mod-ule im-ple-ments the func-tion \OT1/cmtt/m/n/10.9 5 gt[]basename() \OT1/ptm/m/n/10.95 ac-cord-ing to the spec-i- [233] [234] [235] Underfull \hbox (badness 10000) in paragraph at lines 18791--18793 []\OT1/ptm/m/n/10.95 Like $\OML/ztmcm/m/it/10.95 <$\OT1/ptm/m/n/10.95 qsort(3)$ \OML/ztmcm/m/it/10.95 >$\OT1/ptm/m/n/10.95 , but al-lows an ad-di-tional \OT1/c mtt/m/n/10.95 data \OT1/ptm/m/n/10.95 pointer passed to the Underfull \hbox (badness 10000) in paragraph at lines 18831--18832 []\OT1/cmtt/m/n/10.95 void (GtOverflowHandlerFunc)(const char *src[]file, int s rc[]line, void Underfull \hbox (badness 10000) in paragraph at lines 18831--18832 [236] [237] [238] [239] Underfull \hbox (badness 10000) in paragraph at lines 19139--19140 [240] [241] [242] [243] [244] [245] [246] [247] [248]) [249] (./annotationsketch.aux) LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information) {/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} Output written on annotationsketch.pdf (249 pages, 1206707 bytes). Transcript written on annotationsketch.log. mv annotationsketch.aux annotationsketch-pdf.aux test -e annotationsketch.bbl && mv annotationsketch.bbl annotationsketch-pdf.bbl make[3]: Leaving directory '/build/genometools-1.6.2+ds/doc/manuals' make -C ./doc/manuals make[3]: Entering directory '/build/genometools-1.6.2+ds/doc/manuals' test -e readjoiner-pdf.aux && mv readjoiner-pdf.aux readjoiner.aux make[3]: [Makefile:39: readjoiner-pdf.aux] Error 1 (ignored) pdflatex readjoiner.tex && rm readjoiner.pdf test -e hop-pdf.aux && mv hop-pdf.aux hop.aux test -e ltrharvest-pdf.aux && mv ltrharvest-pdf.aux ltrharvest.aux make[3]: [Makefile:39: hop-pdf.aux] Error 1 (ignored) pdflatex hop.tex && rm hop.pdf make[3]: [Makefile:40: ltrharvest-pdf.aux] Error 1 (ignored) pdflatex ltrharvest.tex && rm ltrharvest.pdf test -e ltrdigest-pdf.aux && mv ltrdigest-pdf.aux ltrdigest.aux make[3]: [Makefile:39: ltrdigest-pdf.aux] Error 1 (ignored) pdflatex ltrdigest.tex && rm ltrdigest.pdf faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... test -e uniquesub-pdf.aux && mv uniquesub-pdf.aux uniquesub.aux make[3]: [Makefile:39: uniquesub-pdf.aux] Error 1 (ignored) pdflatex uniquesub.tex && rm uniquesub.pdf test -e matstat-pdf.aux && mv matstat-pdf.aux matstat.aux faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... make[3]: [Makefile:39: matstat-pdf.aux] Error 1 (ignored) pdflatex matstat.tex && rm matstat.pdf faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... test -e mgth-pdf.aux && mv mgth-pdf.aux mgth.aux make[3]: [Makefile:39: mgth-pdf.aux] Error 1 (ignored) pdflatex mgth.tex && rm mgth.pdf test -e packedindex-pdf.aux && mv packedindex-pdf.aux packedindex.aux make[3]: [Makefile:39: packedindex-pdf.aux] Error 1 (ignored) pdflatex packedindex.tex && rm packedindex.pdf faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... test -e repfind-pdf.aux && mv repfind-pdf.aux repfind.aux faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... make[3]: [Makefile:39: repfind-pdf.aux] Error 1 (ignored) pdflatex repfind.tex && rm repfind.pdf faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... head -n 6999 ../../testdata/at1MB > read1.fna echo ">" > read2.fna faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... tail -n 6945 ../../testdata/at1MB >> read2.fna cp ../../testdata/U89959_genomic.fas U89959.fna faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. ../../bin/gt packedindex mkindex -dna -dir rev -parts 12 -bsize 10 \ -sprank -locfreq 32 -tis -ssp -indexname pck-human\ -db ../../testdata/at1MB cp ../../testdata/Q1.gz Q1.gz test -e genomediff-pdf.aux && mv genomediff-pdf.aux genomediff.aux This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... make[3]: [Makefile:39: genomediff-pdf.aux] Error 1 (ignored) pdflatex genomediff.tex && rm genomediff.pdf This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./hop.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)entering extended mode (./ltrharvest.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16>) (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty 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LaTeX Warning: Citation `genometools' on page 1 undefined on input line 71. [1] Overfull \hbox (37.48308pt too wide) in paragraph at lines 132--140 []\OT1/ptm/m/n/12 It is usu-ally quite easy to pre-pare the map-ping as re-quir ed. Say the reads to be cor-rected are \OT1/pcr/m/n/12 f[]reads.fastq Overfull \hbox (32.30313pt too wide) in paragraph at lines 146--146 []\OT1/pcr/m/n/10 > bwa sampe cognate.fas -f map.sam f_reads.sai r_reads.sai f_ reads.fastq r_reads.fastq[] [2] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) Overfull \hbox (14.55139pt too wide) in paragraph at lines 208--213 \OT1/ptm/m/n/12 The pre-fix added by HOP (in this case \OT1/pcr/m/n/12 hop\OT1/ ptm/m/n/12 , which is the de-fault) can be changed us-ing the \OT1/pcr/m/n/12 - outprefix [3] [4] (./hop.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}}] LaTeX Warning: Citation `EKW07' on page 1 undefined on input line 54. Overfull \hbox (12.44974pt too wide) in paragraph at lines 52--56 \OT1/ptm/m/n/12 se-quence fea-tures of LTR retro-trans-posons in pre-dicted can -di-dates, like those re-ported by\OT1/ptm/m/it/12 LTRharvest \OT1/ptm/m/n/12 [ []]. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)}] LaTeX Warning: Citation `MYE:2005' on page 1 undefined on input line 57. LaTeX Warning: Citation `genometools' on page 1 undefined on input line 60. Overfull \hbox (6.12744pt too wide) in paragraph at lines 65--75 [] Overfull \hbox (19.25665pt too wide) in paragraph at lines 80--83 []\OT1/ptm/m/n/12 The \OT1/ptm/m/it/12 Read-joiner \OT1/ptm/m/n/12 tools are ru n us-ing the fol-low-ing syn-tax: \OT1/pcr/m/n/12 gt readjoiner \OT1/ptm/m/n/12 , (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) LaTeX Warning: Citation `gff3' on page 1 undefined on input line 69. LaTeX Warning: Citation `genometools' on page 1 undefined on input line 75. LaTeX Warning: Citation `hmmer' on page 1 undefined on input line 78. LaTeX Warning: Citation `pfam' on page 1 undefined on input line 80. LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 106. [1 [1]] Underfull \hbox (badness 4132) in paragraph at lines 185--188 []\OT1/ptm/m/n/12 a single-end li-brary plus an in-ter-leaved [2]}} LaTeX Warning: Citation `MYE:2005' on page 3 undefined on input line 211. [3]] LaTeX Warning: Citation `MYE:2005' on page 4 undefined on input line 261. [4] Output written on hop.pdf (5 pages, 70228 bytes). Transcript written on hop.log. LaTeX Warning: Citation `HAU:DOM:WIE:2008' on page 1 undefined on input line 90 . LaTeX Warning: Citation `HAU:PFA:DOM:WIE:2009' on page 1 undefined on input lin e 90. LaTeX Warning: Citation `HAU:REE:PFA:2011' on page 1 undefined on input line 90 . LaTeX Warning: Citation `genometools' on page 1 undefined on input line 98. (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) LaTeX Warning: Citation `Edena' on page 5 undefined on input line 328. [5] LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 120. LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 127. LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 134. LaTeX Warning: Reference `overviewOpt' on page 2 undefined on input line 166. [2] [6] [7 [1]] (./readjoiner.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}] [3] < [3/usr/share/texlive/texmf-dist/fonts/type1/u rw/times/utmri8a.pfb] (./uniquesub.aux)> LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Overfull \hbox (18.22491pt too wide) in paragraph at lines 283--291 \OT1/ptm/m/n/12 trans-po-son it-self (\OT1/pcr/m/n/12 LTR[]retrotransposon \OT1 /ptm/m/n/12 type) and the pre-dicted LTRs (\OT1/pcr/m/n/12 long[]terminal[]repe at Underfull \hbox (badness 10000) in paragraph at lines 283--291 [5test -e hop-pdf.aux && mv hop-pdf.aux hop.aux [2]./findemptyoutfiles.sh LaTeX Warning: Reference `code:lua' on page 3 undefined on input line 241. [3 [4}} [2 [7]] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)] Overfull \hbox (35.00766pt too wide) in paragraph at lines 324--325 [][][][][][][][][][][][][][][][][][][][][][][][] No file genomediff.bbl. [5 [8 LaTeX Warning: Citation `LTRharvesturl' on page 1 undefined on input line 51. LaTeX Warning: Citation `EKW07' on page 1 undefined on input line 53. LaTeX Warning: Citation `AKO04' on page 1 undefined on input line 57. LaTeX Warning: Citation `genometools' on page 1 undefined on input line 71. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd]) (./genomediff.aux)] Overfull \hbox (72.74506pt too wide) in paragraph at lines 126--129 []\OT1/ptm/m/n/12 Suppose the in-put se-quence $\OML/cmm/m/it/12 S \OT1/cmr/m/n /12 = \OML/cmm/m/it/12 gagctcgagcgctgct$ \OT1/ptm/m/n/12 is con-tained in the f ile \OT1/pcr/m/n/12 Repfind-example.fna\OT1/ptm/m/n/12 . Overfull \hbox (91.74632pt too wide) in paragraph at lines 130--130 []\OT1/pcr/m/n/10 gt suffixerator -db repfinf-sample.seq -indexname repidx -dna -suf -tis -lcp -ssp -pl [3] LaTeX Warning: Citation `oai:CiteSeerPSU:481302' on page 1 undefined on input l ine 51. LaTeX Warning: Citation `journals/talg/FerraginaMMN07' on page 1 undefined on i nput line 53. LaTeX Warning: Citation `genometools' on page 1 undefined on input line 56. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tctt1200 Overfull \hbox (34.70291pt too wide) in paragraph at lines 564--565 []\OT1/pcr/m/n/12 gt suffixerator -tis -des -dna -ssp -db genome.fas -indexname genome.fas Overfull \hbox (6.71515pt too wide) in paragraph at lines 570--576 []\OT1/ptm/m/n/12 We will also as-sume that the HMM files to be used are called \OT1/pcr/m/n/12 HMM1.hmm\OT1/ptm/m/n/12 , \OT1/pcr/m/n/12 HMM2.hmm \OT1/ptm/m/ n/12 and \OT1/pcr/m/n/12 HMM3.hmm\OT1/ptm/m/n/12 , Overfull \hbox (24.62292pt too wide) in paragraph at lines 577--587 \OT1/pcr/m/n/12 -hmms HMM*.hmm -outfileprefix mygenome-ltrs ltrs[]sorted.gff3 g enome.fas [9] [10] (./ltrdigest.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Overfull \hbox (5.17455pt too wide) in paragraph at lines 163--166 []\OT1/ptm/m/n/12 Kurtz, S., Choud-huri, J. V., Ohle-busch, E., Schleier-ma-che r, C., Stoye, J., Giegerich, LaTeX Warning: Reference `forwardEQ' on page 4 undefined on input line 196. LaTeX Warning: Reference `reversedEQ' on page 4 undefined on input line 196. LaTeX Warning: Reference `forwardEQ' on page 4 undefined on input line 200. LaTeX Warning: Reference `reversedEQ' on page 4 undefined on input line 200. [4 (./repfind.aux)>>> >test -e readjoiner-pdf.aux && mv readjoiner-pdf.aux readjoiner.aux >] (./matstat.aux)] LaTeX Warning: Reference `overviewOpt' on page 1 undefined on input line 106. LaTeX Warning: Reference `Examples' on page 1 undefined on input line 205. [1 ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}>>>>> Output written on uniquesub.pdf (3 pages, 106061 bytes). Transcript written on uniquesub.log. >>} Overfull \hbox (5.0115pt too wide) in paragraph at lines 252--257 \OT1/ptm/m/n/12 The \OT1/pcr/b/n/12 mkctxmap \OT1/ptm/m/n/12 sub-tool fa-cil-i- tates late build-ing of a re-verse lookup ta-ble, it can use the \OT1/pcr/m/sl/ 12 prefix.suf LaTeX Warning: Reference `sec:packedindex:mkindex' on page 3 undefined on input line 278. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd) LaTeX Warning: Citation `krause' on page 1 undefined on input line 51. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)bibtex readjoiner LaTeX Warning: Citation `gff3' on page 3 undefined on input line 249. [3 [3] Output written on repfind.pdf (4 pages, 111447 bytes). Transcript written on repfind.log. ] LaTeX Warning: Citation `genometools' on page 1 undefined on input line 58. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)mv uniquesub.aux uniquesub-pdf.aux test -e uniquesub-pdf.aux && mv uniquesub-pdf.aux uniquesub.aux LaTeX Warning: Citation `genometools' on page 1 undefined on input line 98. Overfull \hbox (1.48183pt too wide) in paragraph at lines 97--108 \OT1/ptm/m/it/12 Tools \OT1/ptm/m/n/12 (see [[]] for in-stal-la-tion in-struc-t ions). There are two dif-fer-ent in-stal-la-tion op-tions for the \OT1/ptm/m/it /12 Genome- [1 [4] LaTeX Warning: Reference `sec:packedindex:examples' on page 4 undefined on inpu t line 310. [4 Output written on ltrdigest.pdf (11 pages, 198276 bytes). Transcript written on ltrdigest.log. ] [5]]mv repfind.aux repfind-pdf.aux Output written on matstat.pdf (2 pages, 99983 bytes). Transcript written on matstat.log. LaTeX Warning: Citation `gttestdata' on page 5 undefined on input line 432. Overfull \hbox (37.00337pt too wide) in paragraph at lines 441--445 []\OT1/ptm/m/n/12 First com-pute the \OT1/ptm/m/it/12 packedin-dex \OT1/ptm/m/n /12 in-dex file (this as-sumes \OT1/pcr/m/sl/12 chr01.19960731.fsa.gz \OT1/ptm/ m/n/12 has been copied/linked [5] LaTeX Warning: Reference `different-options' on page 6 undefined on input line 493. LaTeX Warning: Reference `Example-genome' on page 6 undefined on input line 494 . LaTeX Warning: Reference `ExampleCluster' on page 6 undefined on input line 497 . LaTeX Warning: Citation `vmatch' on page 6 undefined on input line 502. [6]mv ltrdigest.aux ltrdigest-pdf.aux No file packedindex.bbl. [6] (./packedindex.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}]< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfbtest -e repfind-pdf.aux && mv repfind-pdf.aux repfind.aux Overfull \hbox (38.30313pt too wide) in paragraph at lines 605--605 []\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR ) l(rLTR) sim(LTRs) seq-nr[] Overfull \hbox (38.30313pt too wide) in paragraph at lines 633--633 []\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR ) l(rLTR) sim(LTRs) seq-nr[] Overfull \hbox (8.30313pt too wide) in paragraph at lines 657--657 []\OT1/pcr/m/n/10 $ gt ltrharvest -index chr02.19970727.fsa -seed 30 -xdrop 5 - mat 2 -mis -2 -ins -3 [8] Overfull \hbox (1.2452pt too wide) in paragraph at lines 256--257 []\OT1/ptm/m/n/12 . If this op- LaTeX Warning: Reference `Examples' on page 3 undefined on input line 263. [3>]bibtex ltrdigest < /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi8a.pfb [4>bibtex repfind ]] [12] (./ltrharvest.aux)make[3]: [Makefile:33: hop-pdf.bbl] Error 2 (ignored) test -e hop-pdf.bbl || touch hop-pdf.bbl LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb> [7] (./mgth.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}>> >bibtex matstat This is BibTeX, Version 0.99d (TeX Live 2022/Debian) The top-level auxiliary file: readjoiner.aux I found no \bibdata command---while reading file readjoiner.aux I found no \bibstyle command---while reading file readjoiner.aux (There were 2 error messages) mv hop.aux hop-pdf.aux mv packedindex.aux packedindex-pdf.aux make[3]: [Makefile:36: readjoiner-pdf.bbl] Error 2 (ignored) test -e readjoiner-pdf.bbl || touch readjoiner-pdf.bbl Output written on ltrharvest.pdf (13 pages, 170894 bytes). Transcript written on ltrharvest.log. Output written on mgth.pdf (8 pages, 140603 bytes). Transcript written on mgth.log. This is BibTeX, Version 0.99d (TeX Live 2022/Debian) The top-level auxiliary file: uniquesub.aux I found no \bibdata command---while reading file uniquesub.aux I found no \bibstyle command---while reading file uniquesub.aux (There were 2 error messages) test -e hop-pdf.aux && mv hop-pdf.aux hop.aux make[3]: [Makefile:32: uniquesub-pdf.bbl] Error 2 (ignored) test -e uniquesub-pdf.bbl || touch uniquesub-pdf.bbl mv ltrharvest.aux ltrharvest-pdf.aux ./execcommand.pl tallymer.tex > tallymer-tmp.tex mv mgth.aux mgth-pdf.aux diff readjoiner-pdf.bbl readjoiner.bbl || mv readjoiner.bbl readjoiner-pdf.bbl && rm -f readjoiner.bbl # file output/gt-suffixerator--dna--pl--tis--suf--lcp--v--parts-4--db-read1.fna-read2.fna--indexname-reads.out already exists # file output/gt-tallymer-occratio--output-unique-nonunique--minmersize-10--maxmersize-20--esa-reads.out already exists # file output/gt-tallymer-occratio--output-unique-relative--minmersize-10--maxmersize-20--esa-reads.out already exists # file output/gt-tallymer-occratio--output-unique-nonunique--mersizes-10-13-17--esa-reads.out already exists # file output/gt-tallymer-mkindex--mersize-19--minocc-40--esa-reads.out already exists # file output/gt-tallymer-mkindex--mersize-19--minocc-4--indexname-tyr-reads--counts--pl--esa-reads.out already exists # file output/gt-tallymer-search--output-qseqnum-qpos-counts-sequence--tyr-tyr-reads--q-U89959.fna.out already exists test -e hop-pdf.bbl && mv hop-pdf.bbl hop.bbl This is BibTeX, Version 0.99d (TeX Live 2022/Debian) The top-level auxiliary file: ltrdigest.aux The style file: unsrt.bst I found no \bibdata command---while reading file ltrdigest.aux Warning--I didn't find a database entry for "EKW07" Warning--I didn't find a database entry for "gff3" Warning--I didn't find a database entry for "genometools" Warning--I didn't find a database entry for "hmmer" Warning--I didn't find a database entry for "pfam" (There was 1 error message) make[3]: [Makefile:35: ltrdigest-pdf.bbl] Error 2 (ignored) test -e ltrdigest-pdf.bbl || touch ltrdigest-pdf.bbl This is BibTeX, Version 0.99d (TeX Live 2022/Debian) The top-level auxiliary file: repfind.aux I found no \citation commands---while reading file repfind.aux I found no \bibdata command---while reading file repfind.aux I found no \bibstyle command---while reading file repfind.aux (There were 3 error messages) diff uniquesub-pdf.bbl uniquesub.bbl || mv uniquesub.bbl uniquesub-pdf.bbl && rm -f uniquesub.bbl make[3]: [Makefile:35: repfind-pdf.bbl] Error 2 (ignored) test -e repfind-pdf.bbl || touch repfind-pdf.bbl mv readjoiner.aux readjoiner-pdf.aux pdflatex hop.tex diff ltrdigest-pdf.bbl ltrdigest.bbl || mv ltrdigest.bbl ltrdigest-pdf.bbl && rm -f ltrdigest.bbl mv uniquesub.aux uniquesub-pdf.aux diff repfind-pdf.bbl repfind.bbl || mv repfind.bbl repfind-pdf.bbl && rm -f repfind.bbl 0a1,3 > \begin{thebibliography}{} > > \end{thebibliography} test -e packedindex-pdf.aux && mv packedindex-pdf.aux packedindex.aux This is BibTeX, Version 0.99d (TeX Live 2022/Debian) The top-level auxiliary file: matstat.aux I found no \citation commands---while reading file matstat.aux I found no \bibdata command---while reading file matstat.aux I found no \bibstyle command---while reading file matstat.aux (There were 3 error messages) make[3]: [Makefile:32: matstat-pdf.bbl] Error 2 (ignored) test -e matstat-pdf.bbl || touch matstat-pdf.bbl faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... mv ltrdigest.aux ltrdigest-pdf.aux mv repfind.aux repfind-pdf.aux bibtex packedindex diff matstat-pdf.bbl matstat.bbl || mv matstat.bbl matstat-pdf.bbl && rm -f matstat.bbl pdflatex tallymer-tmp mv matstat.aux matstat-pdf.aux test -e readjoiner-pdf.aux && mv readjoiner-pdf.aux readjoiner.aux test -e ltrharvest-pdf.aux && mv ltrharvest-pdf.aux ltrharvest.aux test -e ltrdigest-pdf.aux && mv ltrdigest-pdf.aux ltrdigest.aux faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... test -e readjoiner-pdf.bbl && mv readjoiner-pdf.bbl readjoiner.bbl bibtex ltrharvest This is BibTeX, Version 0.99d (TeX Live 2022/Debian) The top-level auxiliary file: packedindex.aux The style file: unsrt.bst Database file #1: gtmanuals.bib test -e packedindex-pdf.bbl || touch packedindex-pdf.bbl test -e ltrdigest-pdf.bbl && mv ltrdigest-pdf.bbl ltrdigest.bbl pdflatex readjoiner.tex diff packedindex-pdf.bbl packedindex.bbl || mv packedindex.bbl packedindex-pdf.bbl && rm -f packedindex.bbl This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. pdflatex ltrdigest.tex 0a1,21 > \begin{thebibliography}{1} > > \bibitem{oai:CiteSeerPSU:481302} > Paolo Ferragina and Giovanni Manzini. > \newblock Opportunistic data structures with applications, September~03 2000. > > \bibitem{journals/talg/FerraginaMMN07} > Paolo Ferragina, Giovanni Manzini, Veli M{\"a}kinen, and Gonzalo Navarro. > \newblock Compressed representations of sequences and full-text indexes. > \newblock {\em ACM Transactions on Algorithms}, 3(2), 2007. > > \bibitem{genometools} > Gordon Gremme. > \newblock The \textsc{GenomeTools} genome analysis system. > \newblock \url{http://genometools.org}. > > \bibitem{gttestdata} > \textsc{GenomeTools} test data set. > \newblock \url{git://genometools.org/gttestdata.git}. > > \end{thebibliography} test -e uniquesub-pdf.aux && mv uniquesub-pdf.aux uniquesub.aux test -e matstat-pdf.aux && mv matstat-pdf.aux matstat.aux test -e mgth-pdf.aux && mv mgth-pdf.aux mgth.aux test -e repfind-pdf.aux && mv repfind-pdf.aux repfind.aux test -e uniquesub-pdf.bbl && mv uniquesub-pdf.bbl uniquesub.bbl mv packedindex.aux packedindex-pdf.aux faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... test -e matstat-pdf.bbl && mv matstat-pdf.bbl matstat.bbl bibtex mgth faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... test -e repfind-pdf.bbl && mv repfind-pdf.bbl repfind.bbl pdflatex uniquesub.tex This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. pdflatex matstat.tex pdflatex repfind.tex test -e packedindex-pdf.aux && mv packedindex-pdf.aux packedindex.aux This is BibTeX, Version 0.99d (TeX Live 2022/Debian) The top-level auxiliary file: ltrharvest.aux I found no \bibdata command---while reading file ltrharvest.aux I found no \bibstyle command---while reading file ltrharvest.aux (There were 2 error messages) make[3]: [Makefile:32: ltrharvest-pdf.bbl] Error 2 (ignored) test -e ltrharvest-pdf.bbl || touch ltrharvest-pdf.bbl test -e packedindex-pdf.bbl && mv packedindex-pdf.bbl packedindex.bbl pdflatex packedindex.tex diff ltrharvest-pdf.bbl ltrharvest.bbl || mv ltrharvest.bbl ltrharvest-pdf.bbl && rm -f ltrharvest.bbl faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... mv ltrharvest.aux ltrharvest-pdf.aux test -e ltrharvest-pdf.aux && mv ltrharvest-pdf.aux ltrharvest.aux test -e ltrharvest-pdf.bbl && mv ltrharvest-pdf.bbl ltrharvest.bbl faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... pdflatex ltrharvest.tex faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. This is BibTeX, Version 0.99d (TeX Live 2022/Debian) The top-level auxiliary file: mgth.aux I found no \bibdata command---while reading file mgth.aux I found no \bibstyle command---while reading file mgth.aux (There were 2 error messages) make[3]: [Makefile:32: mgth-pdf.bbl] Error 2 (ignored) test -e mgth-pdf.bbl || touch mgth-pdf.bbl This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. diff mgth-pdf.bbl mgth.bbl || mv mgth.bbl mgth-pdf.bbl && rm -f mgth.bbl This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./hop.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo))This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.styThis is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. mv mgth.aux mgth-pdf.aux This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)test -e mgth-pdf.aux && mv mgth-pdf.aux mgth.aux (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)))test -e mgth-pdf.bbl && mv mgth-pdf.bbl mgth.bbl (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)entering extended mode (./tallymer-tmp.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)pdflatex mgth.tex This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)entering extended mode (./packedindex.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty))faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) Underfull \hbox (badness 10000) in paragraph at lines 47--47 []$\OT1/pcr/m/n/14.4 http : / / nar . oxfordjournals . org / cgi / content / [1 (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def})] (./ltrharvest.aux) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty LaTeX Warning: Citation `oai:CiteSeerPSU:481302' on page 1 undefined on input l ine 51. LaTeX Warning: Citation `journals/talg/FerraginaMMN07' on page 1 undefined on i nput line 53. LaTeX Warning: Citation `genometools' on page 1 undefined on input line 56. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map [1) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)}] (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (./optionman.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)] [2]) Overfull \hbox (5.0115pt too wide) in paragraph at lines 252--257 \OT1/ptm/m/n/12 The \OT1/pcr/b/n/12 mkctxmap \OT1/ptm/m/n/12 sub-tool fa-cil-i- tates late build-ing of a re-verse lookup ta-ble, it can use the \OT1/pcr/m/sl/ 12 prefix.suf (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd) [3 (./optionman.sty] [1)] [4] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) LaTeX Warning: Citation `gttestdata' on page 5 undefined on input line 432. Overfull \hbox (37.00337pt too wide) in paragraph at lines 441--445 []\OT1/ptm/m/n/12 First com-pute the \OT1/ptm/m/it/12 packedin-dex \OT1/ptm/m/n /12 in-dex file (this as-sumes \OT1/pcr/m/sl/12 chr01.19960731.fsa.gz \OT1/ptm/ m/n/12 has been copied/linked [5] Overfull \hbox (37.48308pt too wide) in paragraph at lines 132--140 []\OT1/ptm/m/n/12 It is usu-ally quite easy to pre-pare the map-ping as re-quir ed. Say the reads to be cor-rected are \OT1/pcr/m/n/12 f[]reads.fastq Overfull \hbox (32.30313pt too wide) in paragraph at lines 146--146 []\OT1/pcr/m/n/10 > bwa sampe cognate.fas -f map.sam f_reads.sai r_reads.sai f_ reads.fastq r_reads.fastq[] [2 (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (./packedindex.bbl]) [6] (./packedindex.aux (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd}) (./matstat.aux) Overfull \hbox (14.55139pt too wide) in paragraph at lines 208--213 \OT1/ptm/m/n/12 The pre-fix added by HOP (in this case \OT1/pcr/m/n/12 hop\OT1/ ptm/m/n/12 , which is the de-fault) can be changed us-ing the \OT1/pcr/m/n/12 - outprefix [3< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb]>./execcommand.pl tagerator.tex > tagerator-tmp.tex < /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi8a.pfb] (./hop.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}>>>entering extended mode (./mgth.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls] Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo# file output/gt-tagerator--q-Q1.gz--maxocc-10--pck-pck-human.out already exists *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd))# file output/gt-tagerator--q-Q1.gz--pck-pck-human--e-2.out already exists # file output/gt-tagerator--q-Q1.gz--pck-pck-human--e-1--maxocc-5.out already exists Output written on packedindex.pdf (7 pages, 170736 bytes). Transcript written on packedindex.log. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd)pdflatex tagerator-tmp pdflatex packedindex.tex ) Overfull \hbox (49.67761pt too wide) in paragraph at lines 170--170 []\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads .prj': [2] [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map Output written on hop.pdf (5 pages, 69634 bytes). Transcript written on hop.log. faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty LaTeX Warning: Reference `Examples' on page 3 undefined on input line 194. [3pdflatex hop.tex ] (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))})] Overfull \hbox (49.67761pt too wide) in paragraph at lines 257--257 []\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads .prj': [4] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... [5] [1 (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)] (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) [2] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) [6 [3]]} (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty [4] [7]]faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... [5]} Overfull \hbox (6.12744pt too wide) in paragraph at lines 65--75 [] Overfull \hbox (19.25665pt too wide) in paragraph at lines 80--83 []\OT1/ptm/m/n/12 The \OT1/ptm/m/it/12 Read-joiner \OT1/ptm/m/n/12 tools are ru n us-ing the fol-low-ing syn-tax: \OT1/pcr/m/n/12 gt readjoiner \OT1/ptm/m/n/12 , (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [6]] [8] (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty Overfull \hbox (38.30313pt too wide) in paragraph at lines 545--545 []\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR ) l(rLTR) sim(LTRs) seq-nr[] Overfull \hbox (32.30313pt too wide) in paragraph at lines 581--581 []\OT1/pcr/m/n/10 # args=-index chr02.19970727.fsa -v -out pred-chr02.fsa -outi nner pred-inner-chr02.fsa[] [7]} [1] [2] Overfull \hbox (38.30313pt too wide) in paragraph at lines 605--605 []\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR ) l(rLTR) sim(LTRs) seq-nr[] Overfull \hbox (38.30313pt too wide) in paragraph at lines 633--633 []\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR ) l(rLTR) sim(LTRs) seq-nr[] Overfull \hbox (8.30313pt too wide) in paragraph at lines 657--657 []\OT1/pcr/m/n/10 $ gt ltrharvest -index chr02.19970727.fsa -seed 30 -xdrop 5 - mat 2 -mis -2 -ins -3 [8] Overfull \hbox (12.44974pt too wide) in paragraph at lines 52--56 \OT1/ptm/m/n/12 se-quence fea-tures of LTR retro-trans-posons in pre-dicted can -di-dates, like those re-ported by\OT1/ptm/m/it/12 LTRharvest \OT1/ptm/m/n/12 [ []]. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) Overfull \hbox (266.30313pt too wide) in paragraph at lines 666--666 []\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) TSD l(TSD) m(l LTR) s(rLTR) e(rLTR) l(rLTR) TSD l(TSD) m(rLTR) sim(LTRs) seq-nr[] Overfull \hbox (14.30313pt too wide) in paragraph at lines 723--723 []\OT1/pcr/m/n/10 $ gt ltrharvest -index chrAll.19971001.fsa -seed 100 -minlenl tr 100 -maxlenltr 1000 [9 [9]] (./tallymer-tmp.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc})] (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)])] [3] ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc})>> (./repfind.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}>>>>>> (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty] LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 120. LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 127. LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 134. [2> (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def [4)] (./readjoiner.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc Output written on tallymer-tmp.pdf (9 pages, 149151 bytes). Transcript written on tallymer-tmp.log. }))pdflatex tallymer-tmp (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) Overfull \hbox (18.22491pt too wide) in paragraph at lines 283--291 \OT1/ptm/m/n/12 trans-po-son it-self (\OT1/pcr/m/n/12 LTR[]retrotransposon \OT1 /ptm/m/n/12 type) and the pre-dicted LTRs (\OT1/pcr/m/n/12 long[]terminal[]repe at Underfull \hbox (badness 10000) in paragraph at lines 283--291 [5 (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltxpdflatex ltrharvest.tex (/usr/share/texlive/texmf-dist/tex/latex/graphics/dvipsnam.def [6]) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omspcr.fd)This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) Output written on repfind.pdf (4 pages, 110781 bytes). Transcript written on repfind.log. [7 Output written on readjoiner.pdf (8 pages, 115205 bytes). Transcript written on readjoiner.log. ] (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.defpdflatex readjoiner.tex ) (./mgth.aux) [8]pdflatex repfind.tex Overfull \hbox (34.70291pt too wide) in paragraph at lines 564--565 []\OT1/pcr/m/n/12 gt suffixerator -tis -des -dna -ssp -db genome.fas -indexname genome.fas Overfull \hbox (6.71515pt too wide) in paragraph at lines 570--576 []\OT1/ptm/m/n/12 We will also as-sume that the HMM files to be used are called \OT1/pcr/m/n/12 HMM1.hmm\OT1/ptm/m/n/12 , \OT1/pcr/m/n/12 HMM2.hmm \OT1/ptm/m/ n/12 and \OT1/pcr/m/n/12 HMM3.hmm\OT1/ptm/m/n/12 , Overfull \hbox (24.62292pt too wide) in paragraph at lines 577--587 \OT1/pcr/m/n/12 -hmms HMM*.hmm -outfileprefix mygenome-ltrs ltrs[]sorted.gff3 g enome.fas [9]faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... [10] (./ltrdigest.aux *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii) [Loading MPS to PDF converter (version 2006.09.02).] ) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... {/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... Output written on ltrdigest.pdf (11 pages, 197582 bytes). Transcript written on ltrdigest.log. pdflatex ltrdigest.tex }}]] Overfull \hbox (8.18253pt too wide) in paragraph at lines 122--126 \OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu b / current _ fasta / homo _ sapiens _ 47 _ 36i / [2] (./matstat.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}]] (./uniquesub.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} patch level 1 L3 programming layer <2023-01-16>>)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... pdflatex matstat.tex )This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) Output written on uniquesub.pdf (3 pages, 105055 bytes). Transcript written on uniquesub.log. )This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. pdflatex uniquesub.tex (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)entering extended mode (./packedindex.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)) (./optionman.sty))faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.styentering extended mode (./hop.tex} LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)] (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) Overfull \hbox (1.48183pt too wide) in paragraph at lines 97--108 \OT1/ptm/m/it/12 Tools \OT1/ptm/m/n/12 (see [[]] for in-stal-la-tion in-struc-t ions). There are two dif-fer-ent in-stal-la-tion op-tions for the \OT1/ptm/m/it /12 Genome- [1) No file tagerator-tmp.aux. *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty] (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. ) [1 Overfull \hbox (0.98593pt too wide) in paragraph at lines 115--125 []\OT1/pcr/m/n/10.95 BLAST-Filename \OT1/ptm/m/n/12 de-notes the XML for-mat-te d BLAST-hit file, \OT1/pcr/m/n/10.95 Metagenome-Filename \OT1/ptm/m/n/12 the FA STA [2]{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)entering extended mode (./repfind.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) Overfull \hbox (1.2452pt too wide) in paragraph at lines 256--257 []\OT1/ptm/m/n/12 . If this op- [3] (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.styThis is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)))) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omlptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg) [4 (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)]) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) Overfull \hbox (13.12135pt too wide) in paragraph at lines 439--439 []\OT1/ptm/m/n/10.95 tataaaatagccaaatctgagcctaaaagcccttggatatccatgatttagaacgaac catcccctcttattcaggagaagttttctgaactcttcaacatcctcga...| Overfull \hbox (7.99995pt too wide) in paragraph at lines 429--443 [] [5)] (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) Excluding comment 'comment') (./optionman.sty (./optionman.sty)) Overfull \hbox (13.12135pt too wide) in paragraph at lines 452--452 []\OT1/ptm/m/n/10.95 tataaaatagccaaatctgagcctaaaagcccttggatatccatgatttagaacgaac catcccctcttattcaggagaagttttctgaactcttcaacatcctcga...| Overfull \hbox (12.18396pt too wide) in paragraph at lines 456--456 []\OT1/ptm/m/n/10.95 MLLREVTREERKNFYTNEWKVKDIPDFIVKTLELREFGFDHSGEGPSDRKNQYTDIRD LEDYIRATA...| Overfull \hbox (7.99995pt too wide) in paragraph at lines 444--468 [][] Overfull \hbox (12.88672pt too wide) in paragraph at lines 470--472 []\OT1/ptm/m/n/12 Content:| Overfull \hbox (1.15051pt too wide) in paragraph at lines 478--478 [][]| Overfull \hbox (1.15051pt too wide) in paragraph at lines 480--480 [][]| Overfull \hbox (1.15051pt too wide) in paragraph at lines 482--482 [][]| Overfull \hbox (38.49402pt too wide) in paragraph at lines 504--506 []\OT1/ptm/m/n/12 Content:| Overfull \hbox (1.15051pt too wide) in paragraph at lines 506--506 []\OT1/ptm/m/n/12 - Overfull \hbox (1.15051pt too wide) in paragraph at lines 509--509 []\OT1/ptm/m/n/12 - [6 (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)entering extended mode (./tallymer-tmp.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def [7)] (./mgth.aux)) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd (./repfind.aux *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd))) ) patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty> (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.styentering extended mode (./readjoiner.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls} (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)])))) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map [2] (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) [3 (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty]) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty [4)]) Output written on mgth.pdf (8 pages, 139936 bytes). Transcript written on mgth.log. (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty Overfull \hbox (5.90344pt too wide) in paragraph at lines 265--265 []\OT1/pcr/m/n/8 # computing prefix matches with up to 1 differences and at mos t 5 occurrences in the subject sequences[] [5] (./tagerator-tmp.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) Output written on tagerator-tmp.pdf (5 pages, 120617 bytes). Transcript written on tagerator-tmp.log. (./optionman.sty (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty))pdflatex tagerator-tmp (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)entering extended mode (./ltrdigest.tex) LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fdfaketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... ) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo}))]) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)entering extended mode (./uniquesub.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16>) [2 (./tallymer-tmp.aux)] (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty) Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clofaketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) Overfull \hbox (72.74506pt too wide) in paragraph at lines 126--129 []\OT1/ptm/m/n/12 Suppose the in-put se-quence $\OML/cmm/m/it/12 S \OT1/cmr/m/n /12 = \OML/cmm/m/it/12 gagctcgagcgctgct$ \OT1/ptm/m/n/12 is con-tained in the f ile \OT1/pcr/m/n/12 Repfind-example.fna\OT1/ptm/m/n/12 . Overfull \hbox (91.74632pt too wide) in paragraph at lines 130--130 []\OT1/pcr/m/n/10 gt suffixerator -db repfinf-sample.seq -indexname repidx -dna -suf -tis -lcp -ssp -pl [3]) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty Overfull \hbox (5.17455pt too wide) in paragraph at lines 163--166 []\OT1/ptm/m/n/12 Kurtz, S., Choud-huri, J. V., Ohle-busch, E., Schleier-ma-che r, C., Stoye, J., Giegerich, [4] (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (./repfind.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}entering extended mode (./matstat.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16>) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./ltrharvest.aux) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty Output written on repfind.pdf (4 pages, 110781 bytes). Transcript written on repfind.log. (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) [1mv repfind.aux repfind-pdf.aux ) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)){/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg) (./optionman.styThis is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. ))test -e repfind.bbl && mv repfind.bbl repfind-pdf.bbl (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (./optionman.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)) (./ltrdigest.aux) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)) (./readjoiner.aux) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)) [1 (./uniquesub.aux) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) Underfull \hbox (badness 10000) in paragraph at lines 47--47 []$\OT1/pcr/m/n/14.4 http : / / nar . oxfordjournals . org / cgi / content / [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd}]) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)}]This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. ) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) [1] (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) [1] (./optionman.sty) [2] Overfull \hbox (37.48308pt too wide) in paragraph at lines 132--140 []\OT1/ptm/m/n/12 It is usu-ally quite easy to pre-pare the map-ping as re-quir ed. Say the reads to be cor-rected are \OT1/pcr/m/n/12 f[]reads.fastq Overfull \hbox (32.30313pt too wide) in paragraph at lines 146--146 []\OT1/pcr/m/n/10 > bwa sampe cognate.fas -f map.sam f_reads.sai r_reads.sai f_ reads.fastq r_reads.fastq[] [2] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) Overfull \hbox (5.0115pt too wide) in paragraph at lines 252--257 \OT1/ptm/m/n/12 The \OT1/pcr/b/n/12 mkctxmap \OT1/ptm/m/n/12 sub-tool fa-cil-i- tates late build-ing of a re-verse lookup ta-ble, it can use the \OT1/pcr/m/sl/ 12 prefix.suf (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) [3] Overfull \hbox (14.55139pt too wide) in paragraph at lines 208--213 \OT1/ptm/m/n/12 The pre-fix added by HOP (in this case \OT1/pcr/m/n/12 hop\OT1/ ptm/m/n/12 , which is the de-fault) can be changed us-ing the \OT1/pcr/m/n/12 - outprefix [3] (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) [4 (./matstat.aux)] (./hop.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} [4 patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo>] (./packedindex.bbl) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) [6] (./packedindex.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map> (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty]mv hop.aux hop-pdf.aux < /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi8a.pfb>> (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty} (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty] Overfull \hbox (12.44974pt too wide) in paragraph at lines 52--56 \OT1/ptm/m/n/12 se-quence fea-tures of LTR retro-trans-posons in pre-dicted can -di-dates, like those re-ported by\OT1/ptm/m/it/12 LTRharvest \OT1/ptm/m/n/12 [ []]. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))} (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 106. [1)] (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/dvipsnam.def Output written on uniquesub.pdf (3 pages, 105055 bytes). Transcript written on uniquesub.log. )] Output written on packedindex.pdf (7 pages, 170120 bytes). Transcript written on packedindex.log. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fdmv uniquesub.aux uniquesub-pdf.aux ) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) Overfull \hbox (49.67761pt too wide) in paragraph at lines 170--170 []\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads .prj': [2] (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 120. LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 127. LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 134. [2) (./mgth.aux)mv packedindex.aux packedindex-pdf.aux ] [3] [4test -e uniquesub.bbl && mv uniquesub.bbl uniquesub-pdf.bbl ]test -e packedindex.bbl && mv packedindex.bbl packedindex-pdf.bbl Overfull \hbox (18.22491pt too wide) in paragraph at lines 283--291 \OT1/ptm/m/n/12 trans-po-son it-self (\OT1/pcr/m/n/12 LTR[]retrotransposon \OT1 /ptm/m/n/12 type) and the pre-dicted LTRs (\OT1/pcr/m/n/12 long[]terminal[]repe at Underfull \hbox (badness 10000) in paragraph at lines 283--291 [5 [3]] *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) [6] (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omspcr.fd) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) Overfull \hbox (49.67761pt too wide) in paragraph at lines 257--257 []\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads .prj': [4] [7] [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map} [8]] Overfull \hbox (34.70291pt too wide) in paragraph at lines 564--565 []\OT1/pcr/m/n/12 gt suffixerator -tis -des -dna -ssp -db genome.fas -indexname genome.fas Overfull \hbox (6.71515pt too wide) in paragraph at lines 570--576 []\OT1/ptm/m/n/12 We will also as-sume that the HMM files to be used are called \OT1/pcr/m/n/12 HMM1.hmm\OT1/ptm/m/n/12 , \OT1/pcr/m/n/12 HMM2.hmm \OT1/ptm/m/ n/12 and \OT1/pcr/m/n/12 HMM3.hmm\OT1/ptm/m/n/12 , Overfull \hbox (24.62292pt too wide) in paragraph at lines 577--587 \OT1/pcr/m/n/12 -hmms HMM*.hmm -outfileprefix mygenome-ltrs ltrs[]sorted.gff3 g enome.fas [9] [5 [10]] (./ltrdigest.aux) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fdentering extended mode (./tagerator-tmp.tex) LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo [6 [7] (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)] [1 (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty [8]] Overfull \hbox (6.12744pt too wide) in paragraph at lines 65--75 [] Overfull \hbox (19.25665pt too wide) in paragraph at lines 80--83 []\OT1/ptm/m/n/12 The \OT1/ptm/m/it/12 Read-joiner \OT1/ptm/m/n/12 tools are ru n us-ing the fol-low-ing syn-tax: \OT1/pcr/m/n/12 gt readjoiner \OT1/ptm/m/n/12 , (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd [2) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty])) [9] (./tallymer-tmp.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} [1]] [3 (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) [4]] (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty [5] [5 (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)]mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tctt1200 (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./tagerator-tmp.aux) [6] *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [6] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [7] (./readjoiner.aux) [1 ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map} Overfull \hbox (38.30313pt too wide) in paragraph at lines 545--545 []\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR ) l(rLTR) sim(LTRs) seq-nr[] Overfull \hbox (32.30313pt too wide) in paragraph at lines 581--581 []\OT1/pcr/m/n/10 # args=-index chr02.19970727.fsa -v -out pred-chr02.fsa -outi nner pred-inner-chr02.fsa[] [7 ] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) Overfull \hbox (8.18253pt too wide) in paragraph at lines 122--126 \OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu b / current _ fasta / homo _ sapiens _ 47 _ 36i / [2mv tallymer-tmp.pdf tallymer.pdf [10]] (./matstat.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Overfull \hbox (1.48183pt too wide) in paragraph at lines 97--108 \OT1/ptm/m/it/12 Tools \OT1/ptm/m/n/12 (see [[]] for in-stal-la-tion in-struc-t ions). There are two dif-fer-ent in-stal-la-tion op-tions for the \OT1/ptm/m/it /12 Genome- [1]>>]< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb>> Output written on readjoiner.pdf (8 pages, 115205 bytes). Transcript written on readjoiner.log. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omlptm.fd) Overfull \hbox (13.12135pt too wide) in paragraph at lines 439--439 []\OT1/ptm/m/n/10.95 tataaaatagccaaatctgagcctaaaagcccttggatatccatgatttagaacgaac catcccctcttattcaggagaagttttctgaactcttcaacatcctcga...| Overfull \hbox (7.99995pt too wide) in paragraph at lines 429--443 [] [5]] [7] (./mgth.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on matstat.pdf (2 pages, 99983 bytes). Transcript written on matstat.log. mv matstat.aux matstat-pdf.aux test -e matstat.bbl && mv matstat.bbl matstat-pdf.bbl Output written on ltrharvest.pdf (13 pages, 170070 bytes). Transcript written on ltrharvest.log. This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) Output written on mgth.pdf (8 pages, 139936 bytes). Transcript written on mgth.log. (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tctt1200.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tctt.mfmv mgth.aux mgth-pdf.aux test -e mgth.bbl && mv mgth.bbl mgth-pdf.bbl (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mfmv ltrharvest.aux ltrharvest-pdf.aux Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mftest -e ltrharvest.bbl && mv ltrharvest.bbl ltrharvest-pdf.bbl Ok [0] [1] [2] [3] [4]} [5] [6] [7] [8] [9] [10] [11] [12] [27] [29]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txgen.mf Ok [100] [109] [98]] [99] [108]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf Ok [13] [18] [21] [22] [23] [24] [25] [26] [28] [31] [32] [36] [39] [44] [45] [46] [42] [47] [60] [61] [2 [62] [77] [79]] [87] [110] [91] [93] [94] [95] [96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [3] [135] [136] [137] [138] [139] [140] [4 [141]] [142] [143] [144] [145] Overfull \hbox (5.90344pt too wide) in paragraph at lines 265--265 []\OT1/pcr/m/n/8 # computing prefix matches with up to 1 differences and at mos t 5 occurrences in the subject sequences[] [5 [146]] (./tagerator-tmp.aux) [147] ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} [148] [150] [151] [156] [160] [162] [165] [166] [171] [174] [175] [177]< [176/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri 8a.pfb] [180] [181] [182] [183]> [184] [187] [191] [214] [246]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf Ok [185] [178] [179] [170] [186]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf Ok [188] [189] [190]) ) ) ) Font metrics written on tctt1200.tfm. Output written on tctt1200.600gf (128 characters, 22920 bytes). Transcript written on tctt1200.log. Output written on tagerator-tmp.pdf (5 pages, 120617 bytes). Transcript written on tagerator-tmp.log. mv tagerator-tmp.pdf tagerator.pdf mktexpk: /build/genometools-1.6.2+ds/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/tctt1200.600pk: successfully generated. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information) kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tcrm1200 mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tcrm1200 This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm1200.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [27] [29]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txgen.mf Ok [100] [109] [98] [99] [108]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf Ok [13] [18] [21] [22] [23] [24] [25] [26] [28] [31] [32] [36] [39] [44] [45] [46] [42] [47] [60] [61] [62] [77] [79] [87] [110] [91] [93] [94] [95] [96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [171] [172] [173] [174] [175] [177] [176] [180] [181] [182] [183] [184] [187] [191] [214] [246]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf Ok [185] [178] [179] [170] [186]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf Ok [188] [189] [190]) ) ) ) (some charht values had to be adjusted by as much as 0.06665pt) Font metrics written on tcrm1200.tfm. Output written on tcrm1200.600gf (128 characters, 28032 bytes). Transcript written on tcrm1200.log. mktexpk: /build/genometools-1.6.2+ds/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/tcrm1200.600pk: successfully generated. Output written on genomediff.pdf (6 pages, 174462 bytes). Transcript written on genomediff.log. mv genomediff.aux genomediff-pdf.aux test -e genomediff-pdf.aux && mv genomediff-pdf.aux genomediff.aux bibtex genomediff This is BibTeX, Version 0.99d (TeX Live 2022/Debian) The top-level auxiliary file: genomediff.aux The style file: unsrt.bst Database file #1: gtmanuals.bib test -e genomediff-pdf.bbl || touch genomediff-pdf.bbl diff genomediff-pdf.bbl genomediff.bbl || mv genomediff.bbl genomediff-pdf.bbl && rm -f genomediff.bbl 0a1,25 > \begin{thebibliography}{1} > > \bibitem{HAU:DOM:WIE:2008} > Bernhard Haubold, Mirjana Domazet-Loso, and Thomas Wiehe. > \newblock An alignment-free distance measure for closely related genomes. > \newblock In {\em RECOMB-CG ’08: Proceedings of the international workshop on > Comparative Genomics}, pages 87--99, Berlin, Heidelberg, 2008. > Springer-Verlag. > > \bibitem{HAU:PFA:DOM:WIE:2009} > B.~Haubold, P.~Pfaffelhuber, M.~Domazet-Loso, and T.~Wiehe. > \newblock Estimating mutation distances from unaligned genomes. > \newblock {\em J. Comput. Biol.}, 16:1487--1500, "Oct" 2009. > > \bibitem{HAU:REE:PFA:2011} > Bernhard Haubold, Floyd~A. Reed, and Peter Pfaffelhuber. > \newblock Alignment-free estimation of nucleotide diversity. > \newblock {\em Bioinformatics}, 27(4):449--455, 2011. > > \bibitem{genometools} > Gordon Gremme. > \newblock The \textsc{GenomeTools} genome analysis system. > \newblock \url{http://genometools.org}. > > \end{thebibliography} mv genomediff.aux genomediff-pdf.aux test -e genomediff-pdf.aux && mv genomediff-pdf.aux genomediff.aux test -e genomediff-pdf.bbl && mv genomediff-pdf.bbl genomediff.bbl pdflatex genomediff.tex faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./genomediff.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def) (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./genomediff.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] LaTeX Warning: Citation `HAU:DOM:WIE:2008' on page 1 undefined on input line 90 . LaTeX Warning: Citation `HAU:PFA:DOM:WIE:2009' on page 1 undefined on input lin e 90. LaTeX Warning: Citation `HAU:REE:PFA:2011' on page 1 undefined on input line 90 . LaTeX Warning: Citation `genometools' on page 1 undefined on input line 98. (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [1] (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) [2] [3] [4] Overfull \hbox (35.00766pt too wide) in paragraph at lines 324--325 [][][][][][][][][][][][][][][][][][][][][][][][] (./genomediff.bbl) [5] (./genomediff.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information) Output written on genomediff.pdf (6 pages, 188510 bytes). Transcript written on genomediff.log. pdflatex genomediff.tex faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./genomediff.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def) (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./genomediff.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [1] (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) [2] [3] [4] Overfull \hbox (35.00766pt too wide) in paragraph at lines 324--325 [][][][][][][][][][][][][][][][][][][][][][][][] (./genomediff.bbl) [5] (./genomediff.aux) ) (see the transcript file for additional information) Output written on genomediff.pdf (6 pages, 188280 bytes). Transcript written on genomediff.log. mv genomediff.aux genomediff-pdf.aux test -e genomediff.bbl && mv genomediff.bbl genomediff-pdf.bbl make[3]: Leaving directory '/build/genometools-1.6.2+ds/doc/manuals' make[2]: Leaving directory '/build/genometools-1.6.2+ds' make[1]: Leaving directory '/build/genometools-1.6.2+ds' debian/rules override_dh_auto_test make[1]: Entering directory '/build/genometools-1.6.2+ds' bin/gt -test seed=4141941756 Lua serializer module...ok MD5 seqid module...ok PBS finder module...ok alignment class...ok alphabet class...ok array class...ok array example...ok array2dim example...ok array2dim sparse example...ok array3dim example...ok basename module...ok bit pack array class...ok bit pack string module...ok bittab class...ok bittab example...ok block class...ok bsearch module...ok codon iterator class, encoded...ok codon iterator class, simple...ok color space module...ok combinatorics...ok compactulongstore class...ok compressed bitsequence...ok countingsort module...ok cstr module...ok cstr table class...ok database feature index class (GFF-like)...ok description buffer class...ok diagram class...ok disc distri class...ok dlist class...ok dlist example...ok dynamic bittab class...ok editscript class...ok element class...ok elias gamma class...ok encdesc class...ok encseq builder class...ok encseq gc module...ok evaluator class...ok evalue module...ok feature in stream class...ok feature node class...ok feature node iterator example...ok genome node class...ok gff3 escaping module...ok golomb class...ok grep module...ok hashmap class...ok hashtable class...ok hmm class...ok huffman coding class...ok imageinfo class...ok interval tree class...ok intset classes...ok karlin altschul class...ok kmer_database class...ok line class...ok mathsupport module...ok memory allocator module...ok memory feature index class...ok multieoplist...ok popcount sorted tab...ok priority queue class...ok quality module...ok queue class...ok range class...ok range minimum query class...ok ranked list class...ok rdj: string graph class...ok rdj: suffix-prefix matches list module...ok red-black tree class...ok safearith example...ok safearith module...ok sequence buffer class...ok splicedseq class...ok splitter class...ok string class...ok string matching module...ok style class...ok symbol module...ok tag value map class...ok tag value map example...ok tokenizer class...ok track class...ok translator class...ok transtable class...ok uint64hashtable...ok xdrop...ok cd testsuite; ./testsuite.rb -keywords 'gt_sketch and not gt_python and not gt_ruby' seed=1398387459 1379: gt sketch short test : ok 1380: gt sketch short test (stdin) : ok 1381: gt sketch short test (unknown output format) : ok 1382: gt sketch short test (unwriteable PNG file) : ok 1383: gt sketch short test (unwriteable PDF file) : ok 1384: gt sketch short test (nonexistant style file) : ok 1385: gt sketch short test (invalid style file) : ok 1386: gt sketch prob 1 : ok 1387: gt sketch prob 2 : ok 1388: gt sketch track IDs to style file : ok 1389: gt sketch multiline without parent : ok 1390: gt sketch pipe : ok 1391: gt sketch streams <-> file output : ok 1392: gt sketch -showrecmaps : ok 1393: gt sketch -showrecmaps (normal text size) : ok 1394: gt sketch -showrecmaps (narrow image) : ok 1395: gt sketch -showrecmaps (large text size) : ok 1396: gt sketch for transcript (neg. coords in ruler) : ok 1397: gt sketch runtime Lua failures : ok 1398: sketch_constructed (C) : ok 1399: sketch_parsed (C) : ok 1400: sketch_parsed reverse order (C) : ok 1401: sketch_constructed (Lua) : ok 1402: sketch_parsed (Lua) : ok make[1]: Leaving directory '/build/genometools-1.6.2+ds' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/genometools-1.6.2+ds' dh_auto_install -- installmanpages useshared=yes \ x32=no 64bit=yes errorcheck=no prefix=/build/genometools-1.6.2+ds/debian/tmp/usr make -j16 install DESTDIR=/build/genometools-1.6.2\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" installmanpages useshared=yes x32=no 64bit=yes errorcheck=no prefix=/build/genometools-1.6.2\+ds/debian/tmp/usr make[2]: Entering directory '/build/genometools-1.6.2+ds' [link libgenometools.so] bin/gt -createman /tmp/gtmanpages warning: skipping tool 'mgth' in iterator (not a GtTool object) warning: skipping tool 'mkfmindex' in iterator (not a GtTool object) warning: skipping tool 'suffixerator' in iterator (not a GtTool object) warning: skipping tool 'chkintegrity' in iterator (not a GtTool object) warning: skipping tool 'chksearch' in iterator (not a GtTool object) warning: skipping tool 'mkctxmap' in iterator (not a GtTool object) warning: skipping tool 'mkindex' in iterator (not a GtTool object) warning: skipping tool 'trsuftab' in iterator (not a GtTool object) test -d ./doc/manpages || mkdir -p ./doc/manpages rm -f ./doc/manpages/* scripts/create_manpages /tmp/gtmanpages ./doc/manpages .test -d /build/genometools-1.6.2+ds/debian/tmp/usr/bin || mkdir -p /build/genometools-1.6.2+ds/debian/tmp/usr/bin cp bin/gt /build/genometools-1.6.2+ds/debian/tmp/usr/bin .strip /build/genometools-1.6.2+ds/debian/tmp/usr/bin/gt mkdir -p /build/genometools-1.6.2+ds/debian/tmp/usr/share/genometools cp -a gtdata /build/genometools-1.6.2+ds/debian/tmp/usr/share/genometools/ test -d /build/genometools-1.6.2+ds/debian/tmp/usr/include/genometools/core \ || mkdir -p /build/genometools-1.6.2+ds/debian/tmp/usr/include/genometools/core cp src/core/*_api.h /build/genometools-1.6.2+ds/debian/tmp/usr/include/genometools/core test -d /build/genometools-1.6.2+ds/debian/tmp/usr/include/genometools/extended \ || mkdir -p /build/genometools-1.6.2+ds/debian/tmp/usr/include/genometools/extended cp src/extended/*_api.h /build/genometools-1.6.2+ds/debian/tmp/usr/include/genometools/extended test -d /build/genometools-1.6.2+ds/debian/tmp/usr/include/genometools/annotationsketch \ || mkdir -p /build/genometools-1.6.2+ds/debian/tmp/usr/include/genometools/annotationsketch cp src/annotationsketch/*_api.h \ /build/genometools-1.6.2+ds/debian/tmp/usr/include/genometools/annotationsketch test -d /build/genometools-1.6.2+ds/debian/tmp/usr/include/genometools/ltr \ || mkdir -p /build/genometools-1.6.2+ds/debian/tmp/usr/include/genometools/ltr cp src/ltr/*_api.h /build/genometools-1.6.2+ds/debian/tmp/usr/include/genometools/ltr cp obj/gt_config.h /build/genometools-1.6.2+ds/debian/tmp/usr/include/genometools cp src/genometools.h /build/genometools-1.6.2+ds/debian/tmp/usr/include/genometools test -d /build/genometools-1.6.2+ds/debian/tmp/usr/lib || mkdir -p /build/genometools-1.6.2+ds/debian/tmp/usr/lib cp lib/libgenometools.a /build/genometools-1.6.2+ds/debian/tmp/usr/lib cp lib/libgenometools.so.0 /build/genometools-1.6.2+ds/debian/tmp/usr/lib ln -fs /build/genometools-1.6.2+ds/debian/tmp/usr/lib/libgenometools.so.0 /build/genometools-1.6.2+ds/debian/tmp/usr/lib/libgenometools.so [build config script install] sed -e 's!@CC@!cc!' -e 's!@CFLAGS@!-g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security!' \ -e 's!@CPPFLAGS@!-I\\"/build/genometools-1.6.2+ds/debian/tmp/usr/include\\" -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE!' \ -e 's!@CXX@!g++!' -e 's!@CXXFLAGS@!-g -O2 -ffile-prefix-map=/build/genometools-1.6.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security!' \ -e 's!@LDFLAGS@!-L/build/genometools-1.6.2+ds/debian/tmp/usr/lib -Wl,-z,relro -Wl,-z,now -L/usr/local/lib!' \ -e 's!@LIBS@! -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3!' -e "s!@VERSION@!`cat VERSION`!" \ -e 's!@BUILDSTAMP@!"2024-06-19 09:47:10"!' \ -e 's!@SYSTEM@!Linux!' /build/genometools-1.6.2+ds/debian/tmp/usr/bin/genometools-config chmod 755 /build/genometools-1.6.2+ds/debian/tmp/usr/bin/genometools-config ............................................................................................ test ! -d ./doc/manpages || \ ((test -d /build/genometools-1.6.2+ds/debian/tmp/usr/share/man/man1 || mkdir -p /build/genometools-1.6.2+ds/debian/tmp/usr/share/man/man1) \ && cp ./doc/manpages/* /build/genometools-1.6.2+ds/debian/tmp/usr/share/man/man1) make[2]: Leaving directory '/build/genometools-1.6.2+ds' dh_auto_install --sourcedirectory=gtpython --buildsystem=pybuild \ --destdir=/build/genometools-1.6.2+ds/debian/python3-genometools I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/genometools-1.6.2+ds/debian/python3-genometools /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( make[1]: Leaving directory '/build/genometools-1.6.2+ds' dh_install dh_installdocs dh_installchangelogs dh_installman dh_python3 dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms debian/rules override_dh_missing make[1]: Entering directory '/build/genometools-1.6.2+ds' dh_missing --list-missing dh_missing: warning: usr/bin/genometools-config exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/libgenometools.a exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/libgenometools.so exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/libgenometools.so.0 exists in debian/tmp but is not installed to anywhere (related file: "lib/libgenometools.so.0") While detecting missing files, dh_missing noted some files with a similar name to those that were missing. This warning /might/ be resolved by replacing references to the missing files with the similarly named ones that dh_missing found - assuming the content is identical. As an example, you might want to replace: * lib/libgenometools.so.0 with: * usr/lib/libgenometools.so.0 in a file in debian/ or as argument to one of the dh_* tools called from debian/rules. (Note it is possible the paths are not used verbatim but instead directories containing or globs matching them are used instead) Alternatively, add the missing file to debian/not-installed if it cannot and should not be used. The following debhelper tools have reported what they installed (with files per package) * dh_install: genometools (1), genometools-common (1), genometools-doc (0), libgenometools0 (1), libgenometools0-dev (1), python3-genometools (0) * dh_installdocs: genometools (3), genometools-common (0), genometools-doc (14), libgenometools0 (0), libgenometools0-dev (0), python3-genometools (0) * dh_installman: genometools (94), genometools-common (0), genometools-doc (0), libgenometools0 (0), libgenometools0-dev (0), python3-genometools (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. make[1]: Leaving directory '/build/genometools-1.6.2+ds' dh_dwz -a dwz: debian/genometools/usr/bin/gt: .debug_info section not present dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libgenometools0-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package python3-genometools: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'libgenometools0-dbgsym' in '../libgenometools0-dbgsym_1.6.2+ds-3_amd64.deb'. dpkg-deb: building package 'python3-genometools' in '../python3-genometools_1.6.2+ds-3_all.deb'. dpkg-deb: building package 'genometools' in '../genometools_1.6.2+ds-3_amd64.deb'. dpkg-deb: building package 'libgenometools0' in '../libgenometools0_1.6.2+ds-3_amd64.deb'. dpkg-deb: building package 'genometools-common' in '../genometools-common_1.6.2+ds-3_all.deb'. dpkg-deb: building package 'genometools-doc' in '../genometools-doc_1.6.2+ds-3_all.deb'. dpkg-deb: building package 'libgenometools0-dev' in '../libgenometools0-dev_1.6.2+ds-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../genometools_1.6.2+ds-3_amd64.buildinfo dpkg-genchanges --build=binary -O../genometools_1.6.2+ds-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/78221 and its subdirectories I: Current time: Wed Jun 19 09:49:49 -12 2024 I: pbuilder-time-stamp: 1718833789 Thu May 18 15:26:49 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Thu May 18 15:26:49 UTC 2023 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Thu May 18 15:58:58 UTC 2023 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Thu May 18 15:58:58 UTC 2023 I: genometools_1.6.2+ds-3_amd64.changes: Format: 1.8 Date: Mon, 28 Nov 2022 15:54:54 +0100 Source: genometools Binary: genometools genometools-common genometools-doc libgenometools0 libgenometools0-dbgsym libgenometools0-dev python3-genometools Architecture: all amd64 Version: 1.6.2+ds-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: genometools - versatile genome analysis toolkit genometools-common - shared data files for GenomeTools genometools-doc - documentation for GenomeTools libgenometools0 - versatile genome analysis library libgenometools0-dev - development files for GenomeTools python3-genometools - Python3 bindings for genometools Closes: 1024982 Changes: genometools (1.6.2+ds-3) unstable; urgency=medium . [ Nilesh Patra ] * Use arch:any instead of the elaborate arch list that includes all release archs anyway Closes: #1024982 . [ Andreas Tille ] * Create proper file name in watch file * Delete debian/gbp.conf * Standards-Version: 4.6.1 (routine-update) * Add salsa-ci file (routine-update) * Update renamed lintian tag names in lintian overrides. * Set field Upstream-Contact in debian/copyright. * Set upstream metadata fields: Repository-Browse. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * lintian-overrides (see lintian bug #1017966) Checksums-Sha1: 7fc6f0312795ae1ed2fead3e14452d11139e14fe 193896 genometools-common_1.6.2+ds-3_all.deb ab17dbf6ac3d6a0b5e8cc4b6cbfb83bf2e0f3d0e 2992572 genometools-doc_1.6.2+ds-3_all.deb 6c2a033a364847e37f9730663b4853124b797d6e 13199 genometools_1.6.2+ds-3_amd64.buildinfo 2f7b778d844c280bf65577591017622c83f70dd9 1626468 genometools_1.6.2+ds-3_amd64.deb a149347ac2dd91abc2d067de0c07c67f371a5209 4460956 libgenometools0-dbgsym_1.6.2+ds-3_amd64.deb d0b7be6f38171157d652c4262a6bbc213eafdbea 94452 libgenometools0-dev_1.6.2+ds-3_amd64.deb 5b8c4fbb529b38a7a65d5ff019a9a809f3027c6f 1387904 libgenometools0_1.6.2+ds-3_amd64.deb 81a833624fe4c8441b5b7e0365d5b73bd807d8c0 31440 python3-genometools_1.6.2+ds-3_all.deb Checksums-Sha256: 77592f81bd900385024a761edeb863410694ec4b458c3824a2e59211b0bacddc 193896 genometools-common_1.6.2+ds-3_all.deb 1878e9f2f35c738efcfa3aa6cef03c0966fe5a721dca7ff31b2e5776dd4b8571 2992572 genometools-doc_1.6.2+ds-3_all.deb da8329615e648d6466f382c0ca9ed11c57ace4e57828535019f9fd82f5039e4c 13199 genometools_1.6.2+ds-3_amd64.buildinfo e968cd8e5ed70fd493ebce13d562cd44d43e4793cc8786cf917703d2a5b66eff 1626468 genometools_1.6.2+ds-3_amd64.deb e70024886f161d641f30a162c46acecb06a1c54df2bc1c35118a0ff3cc725b9f 4460956 libgenometools0-dbgsym_1.6.2+ds-3_amd64.deb 6f7b7a5acf6e51fd7840726617d68a45c49d7c9f89a59aab7b0ec4dea287543e 94452 libgenometools0-dev_1.6.2+ds-3_amd64.deb 489db8d8b170cbcd92e6c652b7e1268a7b1089c5b168e0bc66c5afeae1013ebf 1387904 libgenometools0_1.6.2+ds-3_amd64.deb ee72d20410f5efc3cb036a2029c42050d93f6218660a4f5c1a17ccb21a2ba63e 31440 python3-genometools_1.6.2+ds-3_all.deb Files: 2625eeefd92f29b7ae76a6571de1e2a7 193896 science optional genometools-common_1.6.2+ds-3_all.deb 91293ddd62392b890636f72e1e003214 2992572 doc optional genometools-doc_1.6.2+ds-3_all.deb a9601ae2ce78453abe0635c79b59c621 13199 science optional genometools_1.6.2+ds-3_amd64.buildinfo 59bd7651e747303c1753385ee3535254 1626468 science optional genometools_1.6.2+ds-3_amd64.deb c05aebdc6820d33fbe6a8751a2f5055a 4460956 debug optional libgenometools0-dbgsym_1.6.2+ds-3_amd64.deb 0b162c0c82334fa2cfa6f6b33659765f 94452 libdevel optional libgenometools0-dev_1.6.2+ds-3_amd64.deb d42bf510d6f9775e6ea99149b1445ee4 1387904 libs optional libgenometools0_1.6.2+ds-3_amd64.deb df5589829e5a4467d4a0fa84e4dfa442 31440 python optional python3-genometools_1.6.2+ds-3_all.deb Thu May 18 15:59:00 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.He57yP55/genometools_1.6.2+ds-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.He57yP55/genometools_1.6.2+ds-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.He57yP55/genometools_1.6.2+ds-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.He57yP55/b1/genometools_1.6.2+ds-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.He57yP55/b2/genometools_1.6.2+ds-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.415s) 0.415s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.132s) 0.132s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Thu May 18 15:59:01 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Thu May 18 15:59:01 UTC 2023 I: genometools from bookworm built successfully and reproducibly on amd64. Thu May 18 15:59:02 UTC 2023 I: Submitting .buildinfo files to external archives: Thu May 18 15:59:02 UTC 2023 I: Submitting 16K b1/genometools_1.6.2+ds-3_amd64.buildinfo.asc Thu May 18 15:59:03 UTC 2023 I: Submitting 16K b2/genometools_1.6.2+ds-3_amd64.buildinfo.asc Thu May 18 15:59:04 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu May 18 15:59:04 UTC 2023 I: Done submitting .buildinfo files. Thu May 18 15:59:04 UTC 2023 I: Removing signed genometools_1.6.2+ds-3_amd64.buildinfo.asc files: removed './b1/genometools_1.6.2+ds-3_amd64.buildinfo.asc' removed './b2/genometools_1.6.2+ds-3_amd64.buildinfo.asc'