Thu May 11 03:34:04 UTC 2023 I: starting to build fenicsx-performance-tests/bookworm/amd64 on jenkins on '2023-05-11 03:34' Thu May 11 03:34:04 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_9/15064/console.log Thu May 11 03:34:04 UTC 2023 I: Downloading source for bookworm/fenicsx-performance-tests=0.5.0~git20220731.821823b-1 --2023-05-11 03:34:04-- http://cdn-fastly.deb.debian.org/debian/pool/main/f/fenicsx-performance-tests/fenicsx-performance-tests_0.5.0%7egit20220731.821823b-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2539 (2.5K) [text/prs.lines.tag] Saving to: ‘fenicsx-performance-tests_0.5.0~git20220731.821823b-1.dsc’ 0K .. 100% 8.89M=0s 2023-05-11 03:34:04 (8.89 MB/s) - ‘fenicsx-performance-tests_0.5.0~git20220731.821823b-1.dsc’ saved [2539/2539] Thu May 11 03:34:04 UTC 2023 I: fenicsx-performance-tests_0.5.0~git20220731.821823b-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: fenicsx-performance-tests Binary: fenicsx-performance-tests, fenicsx-performance-tests-source Architecture: any all Version: 0.5.0~git20220731.821823b-1 Maintainer: Debian Science Team Uploaders: Drew Parsons Homepage: https://github.com/FEniCS/performance-test Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/science-team/fenics/fenicsx-performance-tests Vcs-Git: https://salsa.debian.org/science-team/fenics/fenicsx-performance-tests.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@ Build-Depends: debhelper-compat (= 13), cmake (>= 3.16~), libboost-dev (>= 1.70~), libdolfinx-dev (>= 0.5~), mpi-default-dev, python3-ffcx, xtensor-dev Package-List: fenicsx-performance-tests deb libdevel optional arch=any fenicsx-performance-tests-source deb libdevel optional arch=all Checksums-Sha1: 80bf836062a2a8ca89141b50e18765665a640da3 16794 fenicsx-performance-tests_0.5.0~git20220731.821823b.orig.tar.gz 0be4307bc7c04d51cfe2d9c91e63d1c8ab990e11 5668 fenicsx-performance-tests_0.5.0~git20220731.821823b-1.debian.tar.xz Checksums-Sha256: 62fd6e1138df0d0ec2a9dee38cc49be6338d540631232d0a93c3d49cf715ddd5 16794 fenicsx-performance-tests_0.5.0~git20220731.821823b.orig.tar.gz d1efb2164f09e525834196ebba0b582a3f4dd8d1d1fbc1a7e01efb18935f8364 5668 fenicsx-performance-tests_0.5.0~git20220731.821823b-1.debian.tar.xz Files: ea891b703f4e209bce012d7837ea3b44 16794 fenicsx-performance-tests_0.5.0~git20220731.821823b.orig.tar.gz b828cb8a76d68bfd18806b638c82f93f 5668 fenicsx-performance-tests_0.5.0~git20220731.821823b-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEI8mpPlhYGekSbQo2Vz7x5L1aAfoFAmMsT3gACgkQVz7x5L1a AfrWUA/8DR3b6f1vi+SMat2A/K8KgphmzRQdyvE+UBkWOEG0RZk9/9brjie7XfEv j/Ny75h62wH2rPSHRPWUz8qy0mmV0shpWgRp5JmCVs6PmdC8FAM0RzhIlI2FBugw fH/Pp9Xb8UBCtzKI7jDlAPQiC79nxPEzCNAbzdm0hXoZaPlyWjrHQyLW2Kspt/Zw Ta42TC87v2EAoE5DfO5Llt9n/vaEN6Sk23iKsZQZPl9ztZVFhbV1PySoE8KaryDj TiyLpOHLhB+ufxVXmzQsHRYhE66KsFZKH6RZJnjKjZzXtqBalEd/u2HM8r/AiLKt g3xEet5CjPr7YcIGJcmVRJ0YVGJyp/ivIqAaA0Yt0jhYIFj3u33giCb7QD43JL5R EnLty478hCkQvcOpV7HkCyP9ilTHZ+1Z1Iem6iFkKXMhKZlY6SWhxC2SgMx6NLi1 iMrTTJ5ESxQgt4e//k+qBDGzgcuz0gr6KZzYJ4nnV5DNbh4H7KqYZxCoPFa8z4Up ct/eJLWlnPwYzdIm35rWnigGeXzmlN4C6Dcb12HTvMhr5yk+5Eq8aGtDSulOz3mx THqlEp2AwGT5DCnwsJzLHwH3FtaVrmrAEXLJu3w56D3HvGI/ZEPK+e+mMMDzdurz AXJFvEaRW2EnAKBB4+Z5FXA6NI7fSRu7q+8EnMMeoaTLaMMCQhU= =trwS -----END PGP SIGNATURE----- Thu May 11 03:34:04 UTC 2023 I: Checking whether the package is not for us Thu May 11 03:34:04 UTC 2023 I: Starting 1st build on remote node ionos1-amd64.debian.net. Thu May 11 03:34:04 UTC 2023 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Thu May 11 03:45:58 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed May 10 15:34:06 -12 2023 I: pbuilder-time-stamp: 1683776046 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fenicsx-performance-tests_0.5.0~git20220731.821823b-1.dsc] I: copying [./fenicsx-performance-tests_0.5.0~git20220731.821823b.orig.tar.gz] I: copying [./fenicsx-performance-tests_0.5.0~git20220731.821823b-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Sep 22 00:05:12 2022 -12 gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fenicsx-performance-tests_0.5.0~git20220731.821823b-1.dsc: no acceptable signature found dpkg-source: info: extracting fenicsx-performance-tests in fenicsx-performance-tests-0.5.0~git20220731.821823b dpkg-source: info: unpacking fenicsx-performance-tests_0.5.0~git20220731.821823b.orig.tar.gz dpkg-source: info: unpacking fenicsx-performance-tests_0.5.0~git20220731.821823b-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_complex_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1990128/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='0d1961d02ef44df3a594357cba3d874f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1990128' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TkNc4fkX/pbuilderrc_kdFJ --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TkNc4fkX/b1 --logfile b1/build.log fenicsx-performance-tests_0.5.0~git20220731.821823b-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 5.10.0-22-amd64 #1 SMP Debian 5.10.178-3 (2023-04-22) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/1990128/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake (>= 3.16~), libboost-dev (>= 1.70~), libdolfinx-dev (>= 0.5~), mpi-default-dev, python3-ffcx, xtensor-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake (>= 3.16~); however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev (>= 1.70~); however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfinx-dev (>= 0.5~); however: Package libdolfinx-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ffcx; however: Package python3-ffcx is not installed. pbuilder-satisfydepends-dummy depends on xtensor-dev; however: Package xtensor-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a} libamd2{a} libarchive-zip-perl{a} libarchive13{a} libarpack2{a} libarpack2-dev{a} libbasix-dev{a} libbasix0.5{a} libblas-dev{a} libblas3{a} libboost-atomic1.74-dev{a} libboost-atomic1.74.0{a} libboost-chrono-dev{a} libboost-chrono1.74-dev{a} libboost-chrono1.74.0{a} libboost-date-time1.74-dev{a} libboost-date-time1.74.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.74-dev{a} libboost-filesystem1.74.0{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-math-dev{a} libboost-math1.74-dev{a} libboost-math1.74.0{a} libboost-mpi-dev{a} libboost-mpi1.74-dev{a} libboost-mpi1.74.0{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-serialization-dev{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost-thread-dev{a} libboost-thread1.74-dev{a} libboost-thread1.74.0{a} libboost-timer-dev{a} libboost-timer1.74-dev{a} libboost-timer1.74.0{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libbtf1{a} libc6-dbg{a} libcamd2{a} libcbor0.8{a} libccolamd2{a} libcholmod3{a} libcolamd2{a} libcombblas1.16.0{a} libcurl4{a} libcurl4-openssl-dev{a} libcxsparse3{a} libdebhelper-perl{a} libdolfinx-dev{a} libdolfinx-real-dev{a} libdolfinx-real0.5{a} libedit2{a} libeigen3-dev{a} 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libldap-2.5-0{a} libldl2{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmetis5{a} libmongoose2{a} libmumps-5.5{a} libmumps-dev{a} libmumps-headers-dev{a} libmunge2{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libparpack2{a} libparpack2-dev{a} libpciaccess0{a} libpetsc-real3.18{a} libpetsc-real3.18-dev{a} libpetsc3.18-dev-common{a} libpipeline1{a} libpkgconf3{a} libpmix-dev{a} libpmix2{a} libproc2-0{a} libpsl5{a} libpsm-infinipath1{a} libpsm2-2{a} libpthread-stubs0-dev{a} libptscotch-7.0{a} libptscotch-dev{a} libpugixml-dev{a} libpugixml1v5{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} librbio2{a} librdmacm1{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.2{a} libscotch-7.0{a} libscotch-dev{a} libslepc-real3.18{a} libslepc-real3.18-dev{a} libsliplu1{a} libspqr2{a} libssh2-1{a} libssl-dev{a} libsub-override-perl{a} libsuitesparse-dev{a} libsuitesparseconfig5{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist8{a} libsuperlu5{a} libsz2{a} libtool{a} libtrilinos-amesos-13.2{a} libtrilinos-aztecoo-13.2{a} libtrilinos-aztecoo-dev{a} libtrilinos-epetra-13.2{a} libtrilinos-epetraext-13.2{a} libtrilinos-galeri-13.2{a} libtrilinos-ifpack-13.2{a} libtrilinos-kokkos-13.2{a} libtrilinos-ml-13.2{a} libtrilinos-ml-dev{a} libtrilinos-teuchos-13.2{a} libtrilinos-trilinosss-13.2{a} libtrilinos-trilinosss-dev{a} libtrilinos-triutils-13.2{a} libtrilinos-zoltan-13.2{a} libtrilinos-zoltan-dev{a} libuchardet0{a} libucx0{a} libumfpack5{a} libuv1{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxml2{a} libxml2-dev{a} libxnvctrl0{a} libxsimd-dev{a} libxtensor-dev{a} libyaml-0-2{a} libyaml-dev{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} nlohmann-json3-dev{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-basix{a} python3-cffi{a} python3-cffi-backend{a} python3-dev{a} python3-distutils{a} python3-ffcx{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pkg-resources{a} python3-ply{a} python3-pycparser{a} python3-ufl{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} trilinos-dev{a} valgrind{a} valgrind-mpi{a} x11proto-dev{a} xorg-sgml-doctools{a} xtensor-dev{a} xtl-dev{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl gdb gdb-minimal javascript-common ksh ksh93u+m libarchive-cpio-perl libcoarrays-openmpi-dev libgl-dev libgraphblas-dev libldap-common libmail-sendmail-perl libpetsc3.18-dev-examples libsasl2-modules lynx mksh psmisc publicsuffix python3-numba valgrind-dbg wget xauth zsh 0 packages upgraded, 294 newly installed, 0 to remove and 0 not upgraded. Need to get 203 MB of archives. After unpacking 989 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 procps amd64 2:4.0.2-3 [709 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libcbor0.8 amd64 0.8.0-2+b1 [27.4 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 libfido2-1 amd64 1.12.0-2+b1 [77.2 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 openssh-client amd64 1:9.2p1-2 [988 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libarchive13 amd64 3.6.2-1 [343 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-9 [386 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libjsoncpp25 amd64 1.9.5-4 [78.6 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 librhash0 amd64 1.4.3-3 [134 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libuv1 amd64 1.44.2-1 [140 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 cmake-data all 3.25.1-1 [2026 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 cmake amd64 3.25.1-1 [8692 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 libgfortran-12-dev amd64 12.2.0-14 [834 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 gfortran-12 amd64 12.2.0-14 [10.2 MB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 gfortran amd64 4:12.2.0-3 [1428 B] Get: 69 http://deb.debian.org/debian bookworm/main amd64 libnl-3-200 amd64 3.7.0-0.2+b1 [63.1 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 libnl-route-3-200 amd64 3.7.0-0.2+b1 [185 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 libibverbs1 amd64 44.0-2 [60.7 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 ibverbs-providers amd64 44.0-2 [335 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 icu-devtools amd64 72.1-3 [206 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 libaec0 amd64 1.0.6-1+b1 [21.1 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 libsz2 amd64 1.0.6-1+b1 [7804 B] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libaec-dev amd64 1.0.6-1+b1 [19.9 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libsuitesparseconfig5 amd64 1:5.12.0+dfsg-2 [23.9 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 libamd2 amd64 1:5.12.0+dfsg-2 [36.2 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libarpack2 amd64 3.8.0-3 [102 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libblas-dev amd64 3.11.0-2 [158 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 liblapack-dev amd64 3.11.0-2 [4631 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 libarpack2-dev amd64 3.8.0-3 [116 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 libbasix0.5 amd64 0.5.1-1+b2 [266 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get: 88 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB] Get: 89 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB] Get: 90 http://deb.debian.org/debian bookworm/main amd64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 91 http://deb.debian.org/debian bookworm/main amd64 libbasix-dev amd64 0.5.1-1+b2 [56.9 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-20 [9510 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 libboost-atomic1.74.0 amd64 1.74.0+ds1-20 [220 kB] Get: 94 http://deb.debian.org/debian bookworm/main amd64 libboost-atomic1.74-dev amd64 1.74.0+ds1-20 [221 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 libboost-chrono1.74.0 amd64 1.74.0+ds1-20 [228 kB] Get: 96 http://deb.debian.org/debian bookworm/main amd64 libboost-chrono1.74-dev amd64 1.74.0+ds1-20 [235 kB] Get: 97 http://deb.debian.org/debian bookworm/main amd64 libboost-chrono-dev amd64 1.74.0.3 [4960 B] Get: 98 http://deb.debian.org/debian bookworm/main amd64 libboost-date-time1.74.0 amd64 1.74.0+ds1-20 [217 kB] Get: 99 http://deb.debian.org/debian bookworm/main amd64 libboost-serialization1.74.0 amd64 1.74.0+ds1-20 [318 kB] Get: 100 http://deb.debian.org/debian bookworm/main amd64 libboost-serialization1.74-dev amd64 1.74.0+ds1-20 [359 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 libboost-date-time1.74-dev amd64 1.74.0+ds1-20 [226 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get: 103 http://deb.debian.org/debian bookworm/main amd64 libboost-filesystem1.74.0 amd64 1.74.0+ds1-20 [258 kB] Get: 104 http://deb.debian.org/debian bookworm/main amd64 libboost-system1.74.0 amd64 1.74.0+ds1-20 [218 kB] Get: 105 http://deb.debian.org/debian bookworm/main amd64 libboost-system1.74-dev amd64 1.74.0+ds1-20 [219 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 libboost-filesystem1.74-dev amd64 1.74.0+ds1-20 [279 kB] Get: 107 http://deb.debian.org/debian bookworm/main amd64 libboost-filesystem-dev amd64 1.74.0.3 [4368 B] Get: 108 http://deb.debian.org/debian bookworm/main amd64 libboost-regex1.74.0 amd64 1.74.0+ds1-20 [487 kB] Get: 109 http://deb.debian.org/debian bookworm/main amd64 libicu-dev amd64 72.1-3 [10.3 MB] Get: 110 http://deb.debian.org/debian bookworm/main amd64 libboost-regex1.74-dev amd64 1.74.0+ds1-20 [558 kB] Get: 111 http://deb.debian.org/debian bookworm/main amd64 libboost-iostreams1.74-dev amd64 1.74.0+ds1-20 [248 kB] Get: 112 http://deb.debian.org/debian bookworm/main amd64 libboost-iostreams-dev amd64 1.74.0.3 [4316 B] Get: 113 http://deb.debian.org/debian bookworm/main amd64 libboost-math1.74.0 amd64 1.74.0+ds1-20 [490 kB] Get: 114 http://deb.debian.org/debian bookworm/main amd64 libboost-math1.74-dev amd64 1.74.0+ds1-20 [564 kB] Get: 115 http://deb.debian.org/debian bookworm/main amd64 libboost-math-dev amd64 1.74.0.3 [4532 B] Get: 116 http://deb.debian.org/debian bookworm/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-8 [131 kB] Get: 117 http://deb.debian.org/debian bookworm/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-8 [53.6 kB] Get: 118 http://deb.debian.org/debian bookworm/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.2 [168 kB] Get: 119 http://deb.debian.org/debian bookworm/main amd64 libnuma1 amd64 2.0.16-1 [21.0 kB] Get: 120 http://deb.debian.org/debian bookworm/main amd64 libpsm2-2 amd64 11.2.185-2 [180 kB] Get: 121 http://deb.debian.org/debian bookworm/main amd64 librdmacm1 amd64 44.0-2 [68.6 kB] Get: 122 http://deb.debian.org/debian bookworm/main amd64 libfabric1 amd64 1.17.0-3 [627 kB] Get: 123 http://deb.debian.org/debian bookworm/main amd64 libhwloc15 amd64 2.9.0-1 [154 kB] Get: 124 http://deb.debian.org/debian bookworm/main amd64 libmunge2 amd64 0.5.15-2 [19.5 kB] Get: 125 http://deb.debian.org/debian bookworm/main amd64 libpciaccess0 amd64 0.17-2 [51.4 kB] Get: 126 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 127 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 128 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 129 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2 [292 kB] Get: 130 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2 [759 kB] Get: 131 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 132 http://deb.debian.org/debian bookworm/main amd64 libxnvctrl0 amd64 525.85.05-1 [13.3 kB] Get: 133 http://deb.debian.org/debian bookworm/main amd64 ocl-icd-libopencl1 amd64 2.3.1-1 [43.0 kB] Get: 134 http://deb.debian.org/debian bookworm/main amd64 libhwloc-plugins amd64 2.9.0-1 [17.5 kB] Get: 135 http://deb.debian.org/debian bookworm/main amd64 libpmix2 amd64 4.2.2-1+b1 [622 kB] Get: 136 http://deb.debian.org/debian bookworm/main amd64 libucx0 amd64 1.13.1-1 [860 kB] Get: 137 http://deb.debian.org/debian bookworm/main amd64 libopenmpi3 amd64 4.1.4-3+b1 [2422 kB] Get: 138 http://deb.debian.org/debian bookworm/main amd64 libboost-mpi1.74.0 amd64 1.74.0+ds1-20 [257 kB] Get: 139 http://deb.debian.org/debian bookworm/main amd64 openmpi-common all 4.1.4-3 [167 kB] Get: 140 http://deb.debian.org/debian bookworm/main amd64 libnl-3-dev amd64 3.7.0-0.2+b1 [104 kB] Get: 141 http://deb.debian.org/debian bookworm/main amd64 libnl-route-3-dev amd64 3.7.0-0.2+b1 [203 kB] Get: 142 http://deb.debian.org/debian bookworm/main amd64 libibverbs-dev amd64 44.0-2 [633 kB] Get: 143 http://deb.debian.org/debian bookworm/main amd64 libnuma-dev amd64 2.0.16-1 [35.0 kB] Get: 144 http://deb.debian.org/debian bookworm/main amd64 libltdl7 amd64 2.4.7-5 [393 kB] Get: 145 http://deb.debian.org/debian bookworm/main amd64 libltdl-dev amd64 2.4.7-5 [164 kB] Get: 146 http://deb.debian.org/debian bookworm/main amd64 libhwloc-dev amd64 2.9.0-1 [241 kB] Get: 147 http://deb.debian.org/debian bookworm/main amd64 libevent-2.1-7 amd64 2.1.12-stable-8 [180 kB] Get: 148 http://deb.debian.org/debian bookworm/main amd64 libevent-extra-2.1-7 amd64 2.1.12-stable-8 [107 kB] Get: 149 http://deb.debian.org/debian bookworm/main amd64 libevent-openssl-2.1-7 amd64 2.1.12-stable-8 [60.6 kB] Get: 150 http://deb.debian.org/debian bookworm/main amd64 libevent-dev amd64 2.1.12-stable-8 [305 kB] Get: 151 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 152 http://deb.debian.org/debian bookworm/main amd64 libpmix-dev amd64 4.2.2-1+b1 [902 kB] Get: 153 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 154 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 155 http://deb.debian.org/debian bookworm/main amd64 openmpi-bin amd64 4.1.4-3+b1 [226 kB] Get: 156 http://deb.debian.org/debian bookworm/main amd64 libopenmpi-dev amd64 4.1.4-3+b1 [970 kB] Get: 157 http://deb.debian.org/debian bookworm/main amd64 mpi-default-dev amd64 1.14 [5548 B] Get: 158 http://deb.debian.org/debian bookworm/main amd64 libboost-mpi1.74-dev amd64 1.74.0+ds1-20 [277 kB] Get: 159 http://deb.debian.org/debian bookworm/main amd64 libboost-mpi-dev amd64 1.74.0.3 [4420 B] Get: 160 http://deb.debian.org/debian bookworm/main amd64 libboost-program-options1.74.0 amd64 1.74.0+ds1-20 [328 kB] Get: 161 http://deb.debian.org/debian bookworm/main amd64 libboost-program-options1.74-dev amd64 1.74.0+ds1-20 [358 kB] Get: 162 http://deb.debian.org/debian bookworm/main amd64 libboost-program-options-dev amd64 1.74.0.3 [4340 B] Get: 163 http://deb.debian.org/debian bookworm/main amd64 libboost-serialization-dev amd64 1.74.0.3 [4560 B] Get: 164 http://deb.debian.org/debian bookworm/main amd64 libboost-thread1.74.0 amd64 1.74.0+ds1-20 [257 kB] Get: 165 http://deb.debian.org/debian bookworm/main amd64 libboost-thread1.74-dev amd64 1.74.0+ds1-20 [266 kB] Get: 166 http://deb.debian.org/debian bookworm/main amd64 libboost-thread-dev amd64 1.74.0.3 [4356 B] Get: 167 http://deb.debian.org/debian bookworm/main amd64 libboost-timer1.74.0 amd64 1.74.0+ds1-20 [226 kB] Get: 168 http://deb.debian.org/debian bookworm/main amd64 libboost-timer1.74-dev amd64 1.74.0+ds1-20 [229 kB] Get: 169 http://deb.debian.org/debian bookworm/main amd64 libboost-timer-dev amd64 1.74.0.3 [4456 B] Get: 170 http://deb.debian.org/debian bookworm/main amd64 libbtf1 amd64 1:5.12.0+dfsg-2 [25.6 kB] Get: 171 http://deb.debian.org/debian bookworm/main amd64 libc6-dbg amd64 2.36-9 [7431 kB] Get: 172 http://deb.debian.org/debian bookworm/main amd64 libcamd2 amd64 1:5.12.0+dfsg-2 [37.8 kB] Get: 173 http://deb.debian.org/debian bookworm/main amd64 libccolamd2 amd64 1:5.12.0+dfsg-2 [39.7 kB] Get: 174 http://deb.debian.org/debian bookworm/main amd64 libcolamd2 amd64 1:5.12.0+dfsg-2 [32.9 kB] Get: 175 http://deb.debian.org/debian bookworm/main amd64 libmetis5 amd64 5.1.0.dfsg-7 [171 kB] Get: 176 http://deb.debian.org/debian bookworm/main amd64 libcholmod3 amd64 1:5.12.0+dfsg-2 [335 kB] Get: 177 http://deb.debian.org/debian bookworm/main amd64 libcombblas1.16.0 amd64 1.6.2-8 [284 kB] Get: 178 http://deb.debian.org/debian bookworm/main amd64 libcurl4-openssl-dev amd64 7.88.1-9 [487 kB] Get: 179 http://deb.debian.org/debian bookworm/main amd64 libcxsparse3 amd64 1:5.12.0+dfsg-2 [80.7 kB] Get: 180 http://deb.debian.org/debian bookworm/main amd64 libhdf5-openmpi-103-1 amd64 1.10.8+repack1-1 [1279 kB] Get: 181 http://deb.debian.org/debian bookworm/main amd64 libfftw3-double3 amd64 3.3.10-1 [776 kB] Get: 182 http://deb.debian.org/debian bookworm/main amd64 libfftw3-long3 amd64 3.3.10-1 [337 kB] Get: 183 http://deb.debian.org/debian bookworm/main amd64 libfftw3-single3 amd64 3.3.10-1 [806 kB] Get: 184 http://deb.debian.org/debian bookworm/main amd64 libfftw3-mpi3 amd64 3.3.10-1 [62.0 kB] Get: 185 http://deb.debian.org/debian bookworm/main amd64 libptscotch-7.0 amd64 7.0.3-1 [668 kB] Get: 186 http://deb.debian.org/debian bookworm/main amd64 libsuperlu-dist8 amd64 8.1.2+dfsg1-1+b1 [595 kB] Get: 187 http://deb.debian.org/debian bookworm/main amd64 libhypre-2.26.0 amd64 2.26.0-3 [1603 kB] Get: 188 http://deb.debian.org/debian bookworm/main amd64 libklu1 amd64 1:5.12.0+dfsg-2 [87.9 kB] Get: 189 http://deb.debian.org/debian bookworm/main amd64 mpi-default-bin amd64 1.14 [4752 B] Get: 190 http://deb.debian.org/debian bookworm/main amd64 libscalapack-openmpi2.2 amd64 2.2.1-2+b1 [1554 kB] Get: 191 http://deb.debian.org/debian bookworm/main amd64 libmumps-5.5 amd64 5.5.1-1 [1828 kB] Get: 192 http://deb.debian.org/debian bookworm/main amd64 libspqr2 amd64 1:5.12.0+dfsg-2 [82.2 kB] Get: 193 http://deb.debian.org/debian bookworm/main amd64 libsuperlu5 amd64 5.3.0+dfsg1-2+b1 [170 kB] Get: 194 http://deb.debian.org/debian bookworm/main amd64 libscotch-7.0 amd64 7.0.3-1 [407 kB] Get: 195 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-kokkos-13.2 amd64 13.2.0-4 [105 kB] Get: 196 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-teuchos-13.2 amd64 13.2.0-4 [1257 kB] Get: 197 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-epetra-13.2 amd64 13.2.0-4 [441 kB] Get: 198 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-triutils-13.2 amd64 13.2.0-4 [124 kB] Get: 199 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-epetraext-13.2 amd64 13.2.0-4 [443 kB] Get: 200 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-trilinosss-13.2 amd64 13.2.0-4 [88.1 kB] Get: 201 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-amesos-13.2 amd64 13.2.0-4 [117 kB] Get: 202 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-aztecoo-13.2 amd64 13.2.0-4 [210 kB] Get: 203 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-galeri-13.2 amd64 13.2.0-4 [93.5 kB] Get: 204 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-ifpack-13.2 amd64 13.2.0-4 [486 kB] Get: 205 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-zoltan-13.2 amd64 13.2.0-4 [384 kB] Get: 206 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-ml-13.2 amd64 13.2.0-4 [988 kB] Get: 207 http://deb.debian.org/debian bookworm/main amd64 libumfpack5 amd64 1:5.12.0+dfsg-2 [245 kB] Get: 208 http://deb.debian.org/debian bookworm/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get: 209 http://deb.debian.org/debian bookworm/main amd64 libpetsc-real3.18 amd64 3.18.5+dfsg1-1 [6699 kB] Get: 210 http://deb.debian.org/debian bookworm/main amd64 libpugixml1v5 amd64 1.13-0.2 [84.7 kB] Get: 211 http://deb.debian.org/debian bookworm/main amd64 libparpack2 amd64 3.8.0-3 [98.1 kB] Get: 212 http://deb.debian.org/debian bookworm/main amd64 libslepc-real3.18 amd64 3.18.2+dfsg1-2 [1206 kB] Get: 213 http://deb.debian.org/debian bookworm/main amd64 libdolfinx-real0.5 amd64 1:0.5.2-2+b1 [651 kB] Get: 214 http://deb.debian.org/debian bookworm/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 215 http://deb.debian.org/debian bookworm/main amd64 libldl2 amd64 1:5.12.0+dfsg-2 [25.2 kB] Get: 216 http://deb.debian.org/debian bookworm/main amd64 libmongoose2 amd64 1:5.12.0+dfsg-2 [47.6 kB] Get: 217 http://deb.debian.org/debian bookworm/main amd64 librbio2 amd64 1:5.12.0+dfsg-2 [40.8 kB] Get: 218 http://deb.debian.org/debian bookworm/main amd64 libsliplu1 amd64 1:5.12.0+dfsg-2 [50.6 kB] Get: 219 http://deb.debian.org/debian bookworm/main amd64 libsuitesparse-dev amd64 1:5.12.0+dfsg-2 [983 kB] Get: 220 http://deb.debian.org/debian bookworm/main amd64 libscotch-dev amd64 7.0.3-1 [1570 kB] Get: 221 http://deb.debian.org/debian bookworm/main amd64 libptscotch-dev amd64 7.0.3-1 [1342 kB] Get: 222 http://deb.debian.org/debian bookworm/main amd64 libscalapack-openmpi-dev amd64 2.2.1-2+b1 [9540 B] Get: 223 http://deb.debian.org/debian bookworm/main amd64 libscalapack-mpi-dev amd64 2.2.1-2+b1 [4664 B] Get: 224 http://deb.debian.org/debian bookworm/main amd64 libfftw3-quad3 amd64 3.3.10-1 [603 kB] Get: 225 http://deb.debian.org/debian bookworm/main amd64 libfftw3-bin amd64 3.3.10-1 [51.7 kB] Get: 226 http://deb.debian.org/debian bookworm/main amd64 libfftw3-dev amd64 3.3.10-1 [2123 kB] Get: 227 http://deb.debian.org/debian bookworm/main amd64 libfftw3-mpi-dev amd64 3.3.10-1 [66.2 kB] Get: 228 http://deb.debian.org/debian bookworm/main amd64 libssl-dev amd64 3.0.8-1 [2427 kB] Get: 229 http://deb.debian.org/debian bookworm/main amd64 opencl-c-headers all 3.0~2023.02.06-1 [43.6 kB] Get: 230 http://deb.debian.org/debian bookworm/main amd64 opencl-clhpp-headers all 3.0~2023.02.06-1 [44.4 kB] Get: 231 http://deb.debian.org/debian bookworm/main amd64 ocl-icd-opencl-dev amd64 2.3.1-1 [11.6 kB] Get: 232 http://deb.debian.org/debian bookworm/main amd64 libhdf5-openmpi-fortran-102 amd64 1.10.8+repack1-1 [94.0 kB] Get: 233 http://deb.debian.org/debian bookworm/main amd64 libhdf5-openmpi-hl-100 amd64 1.10.8+repack1-1 [67.7 kB] Get: 234 http://deb.debian.org/debian bookworm/main amd64 libhdf5-openmpi-hl-fortran-100 amd64 1.10.8+repack1-1 [44.5 kB] Get: 235 http://deb.debian.org/debian bookworm/main amd64 libhdf5-openmpi-cpp-103-1 amd64 1.10.8+repack1-1 [128 kB] Get: 236 http://deb.debian.org/debian bookworm/main amd64 libhdf5-openmpi-hl-cpp-100 amd64 1.10.8+repack1-1 [25.5 kB] Get: 237 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get: 238 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-2 [290 kB] Get: 239 http://deb.debian.org/debian bookworm/main amd64 libjpeg-dev amd64 1:2.1.5-2 [71.8 kB] Get: 240 http://deb.debian.org/debian bookworm/main amd64 libhdf5-openmpi-dev amd64 1.10.8+repack1-1 [2675 kB] Get: 241 http://deb.debian.org/debian bookworm/main amd64 libhdf5-mpi-dev amd64 1.10.8+repack1-1 [20.0 kB] Get: 242 http://deb.debian.org/debian bookworm/main amd64 libsuperlu-dev amd64 5.3.0+dfsg1-2+b1 [22.4 kB] Get: 243 http://deb.debian.org/debian bookworm/main amd64 libsuperlu-dist-dev amd64 8.1.2+dfsg1-1+b1 [907 kB] Get: 244 http://deb.debian.org/debian bookworm/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 245 http://deb.debian.org/debian bookworm/main amd64 x11proto-dev all 2022.1-1 [599 kB] Get: 246 http://deb.debian.org/debian bookworm/main amd64 libxau-dev amd64 1:1.0.9-1 [22.9 kB] Get: 247 http://deb.debian.org/debian bookworm/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Get: 248 http://deb.debian.org/debian bookworm/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 249 http://deb.debian.org/debian bookworm/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5344 B] Get: 250 http://deb.debian.org/debian bookworm/main amd64 libxcb1-dev amd64 1.15-1 [181 kB] Get: 251 http://deb.debian.org/debian bookworm/main amd64 libx11-dev amd64 2:1.8.4-2 [836 kB] Get: 252 http://deb.debian.org/debian bookworm/main amd64 libyaml-dev amd64 0.2.5-1 [64.5 kB] Get: 253 http://deb.debian.org/debian bookworm/main amd64 libpetsc3.18-dev-common all 3.18.5+dfsg1-1 [254 kB] Get: 254 http://deb.debian.org/debian bookworm/main amd64 libhypre-dev amd64 2.26.0-3 [1846 kB] Get: 255 http://deb.debian.org/debian bookworm/main amd64 libmumps-headers-dev all 5.5.1-1 [35.9 kB] Get: 256 http://deb.debian.org/debian bookworm/main amd64 libmumps-dev amd64 5.5.1-1 [1689 kB] Get: 257 http://deb.debian.org/debian bookworm/main amd64 trilinos-dev amd64 13.2.0-4 [12.4 kB] Get: 258 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-aztecoo-dev amd64 13.2.0-4 [50.6 kB] Get: 259 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-trilinosss-dev amd64 13.2.0-4 [33.2 kB] Get: 260 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-ml-dev amd64 13.2.0-4 [117 kB] Get: 261 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-zoltan-dev amd64 13.2.0-4 [33.7 kB] Get: 262 http://deb.debian.org/debian bookworm/main amd64 valgrind amd64 1:3.19.0-1 [14.3 MB] Get: 263 http://deb.debian.org/debian bookworm/main amd64 valgrind-mpi amd64 1:3.19.0-1 [140 kB] Get: 264 http://deb.debian.org/debian bookworm/main amd64 libpetsc-real3.18-dev amd64 3.18.5+dfsg1-1 [6490 kB] Get: 265 http://deb.debian.org/debian bookworm/main amd64 libparpack2-dev amd64 3.8.0-3 [109 kB] Get: 266 http://deb.debian.org/debian bookworm/main amd64 libslepc-real3.18-dev amd64 3.18.2+dfsg1-2 [4180 kB] Get: 267 http://deb.debian.org/debian bookworm/main amd64 libdolfinx-real-dev amd64 1:0.5.2-2+b1 [42.3 kB] Get: 268 http://deb.debian.org/debian bookworm/main amd64 libpugixml-dev amd64 1.13-0.2 [105 kB] Get: 269 http://deb.debian.org/debian bookworm/main amd64 libxml2-dev amd64 2.9.14+dfsg-1.2 [781 kB] Get: 270 http://deb.debian.org/debian bookworm/main amd64 python3-cffi-backend amd64 1.15.1-5+b1 [84.6 kB] Get: 271 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get: 272 http://deb.debian.org/debian bookworm/main amd64 python3-pycparser all 2.21-1 [78.8 kB] Get: 273 http://deb.debian.org/debian bookworm/main amd64 python3-cffi all 1.15.1-5 [86.2 kB] Get: 274 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get: 275 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get: 276 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6 [4738 kB] Get: 277 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get: 278 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6 [615 kB] Get: 279 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 280 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get: 281 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 282 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 283 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get: 284 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 285 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get: 286 http://deb.debian.org/debian bookworm/main amd64 python3-ufl all 2022.2.0-2 [175 kB] Get: 287 http://deb.debian.org/debian bookworm/main amd64 python3-basix amd64 0.5.1-1+b2 [144 kB] Get: 288 http://deb.debian.org/debian bookworm/main amd64 python3-ffcx all 1:0.5.0-3 [103 kB] Get: 289 http://deb.debian.org/debian bookworm/main amd64 xtl-dev all 0.7.2-2.1 [89.5 kB] Get: 290 http://deb.debian.org/debian bookworm/main amd64 nlohmann-json3-dev all 3.11.2-2 [259 kB] Get: 291 http://deb.debian.org/debian bookworm/main amd64 libxtensor-dev amd64 0.24.3-1 [189 kB] Get: 292 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get: 293 http://deb.debian.org/debian bookworm/main amd64 libdolfinx-dev amd64 1:0.5.2-2+b1 [155 kB] Get: 294 http://deb.debian.org/debian bookworm/main amd64 xtensor-dev all 0.24.3-1 [5372 B] Fetched 203 MB in 44s (4654 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19912 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_amd64.deb ... 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Setting up libcxsparse3:amd64 (1:5.12.0+dfsg-2) ... Setting up cmake-data (3.25.1-1) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up libboost-math1.74-dev:amd64 (1.74.0+ds1-20) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.2) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libboost-filesystem1.74-dev:amd64 (1.74.0+ds1-20) ... Setting up nlohmann-json3-dev (3.11.2-2) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libboost-date-time1.74.0:amd64 (1.74.0+ds1-20) ... Setting up libfido2-1:amd64 (1.12.0-2+b1) ... Setting up valgrind (1:3.19.0-1) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up valgrind-mpi (1:3.19.0-1) ... Setting up readline-common (8.2-1.3) ... Setting up libboost-timer1.74.0:amd64 (1.74.0+ds1-20) ... Setting up libicu-dev:amd64 (72.1-3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ... Setting up libsuitesparseconfig5:amd64 (1:5.12.0+dfsg-2) ... Setting up libboost-filesystem-dev:amd64 (1.74.0.3) ... Setting up libtrilinos-trilinosss-dev:amd64 (13.2.0-4) ... Setting up libblas-dev:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libsz2:amd64 (1.0.6-1+b1) ... Setting up librbio2:amd64 (1:5.12.0+dfsg-2) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libboost-thread1.74.0:amd64 (1.74.0+ds1-20) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-8) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2022.1-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libamd2:amd64 (1:5.12.0+dfsg-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libevent-extra-2.1-7:amd64 (2.1.12-stable-8) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libxau-dev:amd64 (1:1.0.9-1) ... Setting up libcolamd2:amd64 (1:5.12.0+dfsg-2) ... Setting up libyaml-dev:amd64 (0.2.5-1) ... Setting up libtool (2.4.7-5) ... Setting up libarchive13:amd64 (3.6.2-1) ... Setting up libboost-chrono-dev:amd64 (1.74.0.3) ... Setting up libfftw3-bin (3.3.10-1) ... Setting up libboost-math-dev:amd64 (1.74.0.3) ... Setting up libedit2:amd64 (3.1-20221030-2) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libxtensor-dev:amd64 (0.24.3-1) ... Setting up libpugixml-dev:amd64 (1.13-0.2) ... Setting up libaec-dev:amd64 (1.0.6-1+b1) ... Setting up libarpack2:amd64 (3.8.0-3) ... Setting up libjpeg-dev:amd64 (1:2.1.5-2) ... Setting up libsuperlu5:amd64 (5.3.0+dfsg1-2+b1) ... Setting up libevent-openssl-2.1-7:amd64 (2.1.12-stable-8) ... Setting up libgfortran-12-dev:amd64 (12.2.0-14) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up pkgconf:amd64 (1.8.1-1) ... Setting up xtensor-dev (0.24.3-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:amd64 (2.0.16-1) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.2+b1) ... Setting up libsliplu1:amd64 (1:5.12.0+dfsg-2) ... Setting up dh-autoreconf (20) ... Setting up libltdl-dev:amd64 (2.4.7-5) ... Setting up libcamd2:amd64 (1:5.12.0+dfsg-2) ... Setting up libmongoose2:amd64 (1:5.12.0+dfsg-2) ... Setting up libxdmcp-dev:amd64 (1:1.1.2-3) ... Setting up gfortran-12 (12.2.0-14) ... Setting up libxml2-dev:amd64 (2.9.14+dfsg-1.2) ... Setting up libbasix0.5:amd64 (0.5.1-1+b2) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up opencl-clhpp-headers (3.0~2023.02.06-1) ... Setting up libevent-dev (2.1.12-stable-8) ... Setting up liblapack-dev:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libeigen3-dev (3.4.0-4) ... Setting up libboost-timer1.74-dev:amd64 (1.74.0+ds1-20) ... Setting up pkg-config:amd64 (1.8.1-1) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up ocl-icd-opencl-dev:amd64 (2.3.1-1) ... Setting up libboost-serialization1.74-dev:amd64 (1.74.0+ds1-20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up libboost-regex1.74-dev:amd64 (1.74.0+ds1-20) ... Setting up libnl-3-dev:amd64 (3.7.0-0.2+b1) ... Setting up groff-base (1.22.4-10) ... Setting up libklu1:amd64 (1:5.12.0+dfsg-2) ... Setting up libccolamd2:amd64 (1:5.12.0+dfsg-2) ... Setting up libcurl4:amd64 (7.88.1-9) ... Setting up libx11-6:amd64 (2:1.8.4-2) ... Setting up libhwloc-dev:amd64 (2.9.0-1) ... Setting up libsuperlu-dev:amd64 (5.3.0+dfsg1-2+b1) ... Setting up libbasix-dev:amd64 (0.5.1-1+b2) ... Setting up libfftw3-dev:amd64 (3.3.10-1) ... Setting up libcholmod3:amd64 (1:5.12.0+dfsg-2) ... Setting up libboost-timer-dev:amd64 (1.74.0.3) ... Setting up libspqr2:amd64 (1:5.12.0+dfsg-2) ... Setting up libibverbs1:amd64 (44.0-2) ... Setting up libarpack2-dev:amd64 (3.8.0-3) ... Setting up libxcb1-dev:amd64 (1.15-1) ... Setting up ibverbs-providers:amd64 (44.0-2) ... Setting up openssh-client (1:9.2p1-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up libx11-dev:amd64 (2:1.8.4-2) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:12.2.0-3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libxnvctrl0:amd64 (525.85.05-1) ... Setting up libboost-iostreams1.74-dev:amd64 (1.74.0+ds1-20) ... Setting up libnl-route-3-dev:amd64 (3.7.0-0.2+b1) ... Setting up libboost-date-time1.74-dev:amd64 (1.74.0+ds1-20) ... Setting up libumfpack5:amd64 (1:5.12.0+dfsg-2) ... Setting up libcurl4-openssl-dev:amd64 (7.88.1-9) ... Setting up libboost-serialization-dev:amd64 (1.74.0.3) ... Setting up cmake (3.25.1-1) ... Setting up libboost-thread1.74-dev:amd64 (1.74.0+ds1-20) ... Setting up libboost-thread-dev:amd64 (1.74.0.3) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up librdmacm1:amd64 (44.0-2) ... Setting up python3.11 (3.11.2-6) ... Setting up libucx0:amd64 (1.13.1-1) ... Setting up libpython3.11:amd64 (3.11.2-6) ... Setting up libsuitesparse-dev:amd64 (1:5.12.0+dfsg-2) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up libboost-iostreams-dev:amd64 (1.74.0.3) ... Setting up libibverbs-dev:amd64 (44.0-2) ... Setting up libhwloc-plugins:amd64 (2.9.0-1) ... Setting up libpython3.11-dev:amd64 (3.11.2-6) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-cffi-backend:amd64 (1.15.1-5+b1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up libfabric1:amd64 (1.17.0-3) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up libpmix2:amd64 (4.2.2-1+b1) ... Setting up python3.11-dev (3.11.2-6) ... Setting up libopenmpi3:amd64 (4.1.4-3+b1) ... Setting up python3-ply (3.11-5) ... Setting up libboost-mpi1.74.0 (1.74.0+ds1-20) ... Setting up libfftw3-mpi3:amd64 (3.3.10-1) ... Setting up python3-pycparser (2.21-1) ... Setting up libtrilinos-teuchos-13.2:amd64 (13.2.0-4) ... Setting up libtrilinos-epetra-13.2:amd64 (13.2.0-4) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up libtrilinos-aztecoo-13.2:amd64 (13.2.0-4) ... Setting up libtrilinos-aztecoo-dev:amd64 (13.2.0-4) ... Setting up libtrilinos-triutils-13.2:amd64 (13.2.0-4) ... Setting up libpmix-dev:amd64 (4.2.2-1+b1) ... Setting up openmpi-bin (4.1.4-3+b1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up python3-basix (0.5.1-1+b2) ... Setting up libhdf5-openmpi-103-1:amd64 (1.10.8+repack1-1) ... Setting up libptscotch-7.0:amd64 (7.0.3-1) ... Setting up libparpack2:amd64 (3.8.0-3) ... Setting up libcombblas1.16.0:amd64 (1.6.2-8) ... Setting up python3-ufl (2022.2.0-2) ... Setting up libsuperlu-dist8:amd64 (8.1.2+dfsg1-1+b1) ... Setting up python3-cffi (1.15.1-5) ... Setting up libfftw3-mpi-dev:amd64 (3.3.10-1) ... Setting up mpi-default-bin (1.14) ... Setting up libtrilinos-zoltan-13.2:amd64 (13.2.0-4) ... Setting up libsuperlu-dist-dev:amd64 (8.1.2+dfsg1-1+b1) ... Setting up python3-ffcx (1:0.5.0-3) ... Setting up libhdf5-openmpi-fortran-102:amd64 (1.10.8+repack1-1) ... Setting up libtrilinos-zoltan-dev:amd64 (13.2.0-4) ... Setting up libtrilinos-epetraext-13.2:amd64 (13.2.0-4) ... Setting up libtrilinos-galeri-13.2:amd64 (13.2.0-4) ... Setting up libhdf5-openmpi-hl-100:amd64 (1.10.8+repack1-1) ... Setting up libopenmpi-dev:amd64 (4.1.4-3+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libhdf5-openmpi-cpp-103-1:amd64 (1.10.8+repack1-1) ... Setting up libhdf5-openmpi-hl-cpp-100:amd64 (1.10.8+repack1-1) ... Setting up libscalapack-openmpi2.2:amd64 (2.2.1-2+b1) ... Setting up libhdf5-openmpi-hl-fortran-100:amd64 (1.10.8+repack1-1) ... Setting up libhypre-2.26.0:amd64 (2.26.0-3) ... Setting up libmumps-5.5:amd64 (5.5.1-1) ... Setting up libscalapack-openmpi-dev:amd64 (2.2.1-2+b1) ... Setting up mpi-default-dev (1.14) ... Setting up libtrilinos-amesos-13.2:amd64 (13.2.0-4) ... Setting up libscalapack-mpi-dev:amd64 (2.2.1-2+b1) ... Setting up libhdf5-openmpi-dev (1.10.8+repack1-1) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libmumps-dev:amd64 (5.5.1-1) ... Setting up libscotch-dev (7.0.3-1) ... Setting up libboost-mpi1.74-dev (1.74.0+ds1-20) ... Setting up libparpack2-dev:amd64 (3.8.0-3) ... Setting up libhypre-dev:amd64 (2.26.0-3) ... Setting up libptscotch-dev (7.0.3-1) ... Setting up libboost-mpi-dev (1.74.0.3) ... Setting up libtrilinos-ifpack-13.2:amd64 (13.2.0-4) ... Setting up libhdf5-mpi-dev (1.10.8+repack1-1) ... Setting up libpetsc3.18-dev-common (3.18.5+dfsg1-1) ... Setting up libtrilinos-ml-13.2:amd64 (13.2.0-4) ... Setting up libtrilinos-ml-dev:amd64 (13.2.0-4) ... Setting up libpetsc-real3.18:amd64 (3.18.5+dfsg1-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.18.5 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.18 (libpetsc.so.3.18) in auto mode Setting up libslepc-real3.18 (3.18.2+dfsg1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.18.2 to provide /usr/lib/x86_64-linux-gnu/libslepc.so.3.18 (libslepc.so.3.18) in auto mode Setting up libdolfinx-real0.5:amd64 (1:0.5.2-2+b1) ... Setting up libpetsc-real3.18-dev:amd64 (3.18.5+dfsg1-1) ... update-alternatives: error: no alternatives for petsc update-alternatives: using /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.18.5 to provide /usr/lib/x86_64-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real to provide /usr/lib/petscdir/3.18 (petsc3.18) in auto mode Setting up libslepc-real3.18-dev (3.18.2+dfsg1-2) ... update-alternatives: error: no alternatives for slepc update-alternatives: using /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.18.2 to provide /usr/lib/x86_64-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/3.18 (slepc3.18) in auto mode Setting up libdolfinx-real-dev:amd64 (1:0.5.2-2+b1) ... Setting up libdolfinx-dev:amd64 (1:0.5.2-2+b1) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fenicsx-performance-tests_0.5.0~git20220731.821823b-1_source.changes dpkg-buildpackage: info: source package fenicsx-performance-tests dpkg-buildpackage: info: source version 0.5.0~git20220731.821823b-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake --sourcedirectory=src dh_auto_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_clean -O--buildsystem=cmake -O--sourcedirectory=src debian/rules binary dh binary --buildsystem=cmake --sourcedirectory=src dh_update_autotools_config -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf -O--buildsystem=cmake -O--sourcedirectory=src debian/rules override_dh_auto_configure make[1]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b' dh_auto_configure -- -D CMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF ../src -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem -- Found boost_headers 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.74.0 -- Found boost_timer 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.74.0 -- [x] libboost_timer.so.1.74.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: chrono;headers -- Found boost_chrono 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_chrono-1.74.0 -- [x] libboost_chrono.so.1.74.0 -- [ ] libboost_chrono.a -- Adding boost_chrono dependencies: headers -- Found boost_filesystem 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_filesystem-1.74.0 -- [x] libboost_filesystem.so.1.74.0 -- [ ] libboost_filesystem.a -- Adding boost_filesystem dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer filesystem -- Performing Test arch_native_supported -- Performing Test arch_native_supported - Success -- Found Python3: /usr/bin/python3 (found version "3.11.2") found components: Interpreter -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.8") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'SLEPc;slepc' -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS program_options -- Found boost_program_options 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_program_options-1.74.0 -- [x] libboost_program_options.so.1.74.0 -- [ ] libboost_program_options.a -- Adding boost_program_options dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: program_options -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b' dh_auto_build -O--buildsystem=cmake -O--sourcedirectory=src cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' /usr/bin/cmake -S"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -B"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/CMakeFiles" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/depend make[3]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' [ 10%] Generating Elasticity.c [ 20%] Generating Poisson.c ffcx /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/Elasticity.py ffcx /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/Poisson.py cd "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/build make[3]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' [ 30%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o [ 40%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.5.2\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/mesh.cpp" [ 50%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.5.2\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/main.cpp" /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.5.2\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/elasticity_problem.cpp" [ 60%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.5.2\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/poisson_problem.cpp" [ 70%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o [ 80%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.5.2\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/mem.cpp" /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.5.2\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/Elasticity.c" [ 90%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.5.2\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/Poisson.c" [100%] Linking CXX executable dolfinx-scaling-test /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfinx-scaling-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro "CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o" "CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o" -o dolfinx-scaling-test /usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.5.2 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.13 /usr/lib/x86_64-linux-gnu/libbasix.so.0.5.1 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/lib/libpetsc_real.so make[3]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' [100%] Built target dolfinx-scaling-test make[2]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/CMakeFiles" 0 make[1]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b' debian/tests/run-dolfinx-scaling-test -p /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu ==== elasticity weak scaling (3 processes with ndofs=10000) ==== 2023-05-10 15:42:54.614 ( 0.930s) [RANK: 0 ] utils.cpp:612 INFO| Compute partition of cells across ranks 2023-05-10 15:42:54.614 ( 0.930s) [RANK: 0 ] graphbuild.cpp:533 INFO| Building mesh dual graph 2023-05-10 15:42:54.614 ( 0.930s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2023-05-10 15:42:54.760 ( 1.076s) [RANK: 0 ] graphbuild.cpp:89 INFO| Build nonlocal part of mesh dual graph 2023-05-10 15:42:54.760 ( 1.077s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:42:54.774 ( 1.091s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:42:54.774 ( 1.091s) [RANK: 0 ] graphbuild.cpp:203 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2023-05-10 15:42:54.903 ( 1.220s) [RANK: 0 ] graphbuild.cpp:545 INFO| Graph edges (local: 66332, non-local: 962) 2023-05-10 15:42:54.903 ( 1.220s) [RANK: 0 ] partitioners.cpp:316 INFO| Compute graph partition using PT-SCOTCH 2023-05-10 15:43:08.996 ( 15.313s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2023-05-10 15:43:09.030 ( 15.347s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2023-05-10 15:43:09.120 ( 15.436s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2023-05-10 15:43:09.243 ( 15.559s) [RANK: 0 ] ordering.cpp:202 INFO| GPS pseudo-diameter:(122) 1400-17068 2023-05-10 15:43:09.247 ( 15.564s) [RANK: 0 ] Topology.cpp:923 INFO| Create topology 2023-05-10 15:43:09.290 ( 15.607s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2023-05-10 15:43:09.314 ( 15.631s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2023-05-10 15:43:09.572 ( 15.889s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:43:09.614 ( 15.931s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:43:09.667 ( 15.983s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:43:09.698 ( 16.015s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:43:09.789 ( 16.105s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:43:09.811 ( 16.127s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:43:09.882 ( 16.199s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-10 15:43:09.894 ( 16.211s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-10 15:43:10.063 ( 16.379s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:43:10.094 ( 16.411s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:43:10.171 ( 16.488s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-10 15:43:10.194 ( 16.511s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-10 15:43:10.195 ( 16.511s) [RANK: 0 ] MPI.h:368 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2023-05-10 15:43:10.231 ( 16.547s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:43:10.254 ( 16.571s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:43:10.254 ( 16.571s) [RANK: 0 ] MPI.h:500 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 2023-05-10 15:43:10.475 ( 16.791s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 2 UnitCube (24x19x19) to be refined 0 times 2023-05-10 15:43:10.498 ( 16.815s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:43:10.562 ( 16.879s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:43:10.910 ( 17.227s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:43:10.934 ( 17.251s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:43:10.984 ( 17.301s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-10 15:43:10.985 ( 17.301s) [RANK: 0 ]topologycomputation.cpp:650 INFO| Computing mesh connectivity 2 - 3 from transpose. 2023-05-10 15:43:10.995 ( 17.311s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 0 2023-05-10 15:43:10.997 ( 17.313s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:43:11.018 ( 17.335s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:43:11.079 ( 17.395s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:43:11.102 ( 17.419s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:43:11.174 ( 17.491s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-10 15:43:11.190 ( 17.507s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-10 15:43:11.347 ( 17.663s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:43:11.370 ( 17.687s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:43:11.515 ( 17.831s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2023-05-10 15:43:11.515 ( 17.831s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2023-05-10 15:43:11.515 ( 17.831s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 0 2023-05-10 15:43:11.515 ( 17.832s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-10 15:43:11.828 ( 18.144s) [RANK: 0 ] SparsityPattern.cpp:389 INFO| Column ghost size increased from 220 to 542 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.5.2 dolfinx hash: debian_1:0.5.2-2+b1 ufl hash: da4f06cb7b24fd71359bedaeafbca801c698ea33 petsc version: Petsc Release Version 3.18.5, Feb 27, 2023 Problem type: elasticity Scaling type: weak Num processes: 3 Num cells: 51984 (52 thousand) Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- 2023-05-10 15:43:13.831 ( 20.147s) [RANK: 0 ] petsc.cpp:677 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = -1. -1. -1. Threshold scaling factor for each level not specified = 1. AGG specific options Number of levels to square graph 1 Number smoothing steps 1 Complexity: grid = 1.0688 operator = 1.27764 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 3 MPI processes type: bjacobi number of blocks = 3 Local solver information for first block is in the following KSP and PC objects on rank 0: Use -mg_coarse_ksp_view ::ascii_info_detail to display information for all blocks KSP Object: (mg_coarse_sub_) 1 MPI process type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI process type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.05547 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=228, cols=228, bs=6 package used to perform factorization: petsc total: nonzeros=50688, allocated nonzeros=50688 using I-node routines: found 50 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=228, cols=228, bs=6 total: nonzeros=48024, allocated nonzeros=48024 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 64 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=228, cols=228, bs=6 total: nonzeros=48024, allocated nonzeros=48024 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 64 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev eigenvalue targets used: min 0.202116, max 2.22328 eigenvalues provided (min 1.03099e-06, max 2.02116) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=1836, cols=1836, bs=6 total: nonzeros=299448, allocated nonzeros=299448 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 192 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev eigenvalue targets used: min 0.258439, max 2.84283 eigenvalues provided (min 0.0700878, max 2.58439) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3411 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3411 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh | 1 15.879174 15.879174 Build dofmap data | 2 0.396063 0.792125 Build sparsity | 1 0.056259 0.056259 Compute connectivity 2-3 | 1 0.000703 0.000703 Compute dof reordering map | 2 0.000241 0.000482 Compute entities of dim = 2 | 1 0.513584 0.513584 Compute graph partition (SCOTCH) | 1 14.069075 14.069075 Compute local part of mesh dual graph | 2 0.126624 0.253247 Compute local-to-local map | 1 0.000557 0.000557 Compute non-local part of mesh dual graph | 1 0.167024 0.167024 Compute-local-to-global links for global/local adjacency list | 1 0.000586 0.000586 Distribute AdjacencyList nodes to destination ranks | 1 0.151541 0.151541 Distribute row-wise data (scalable) | 1 0.252201 0.252201 Extract partition boundaries from SCOTCH graph | 1 0.000807 0.000807 GPS: create_level_structure | 5 0.003258 0.019546 Get SCOTCH graph data | 1 0.000017 0.000017 Gibbs-Poole-Stockmeyer ordering | 1 0.029146 0.029146 Init MPI | 1 0.759492 0.759492 Init PETSc | 1 0.175823 0.175823 Init dofmap from element dofmap | 2 0.001838 0.003676 Init logging | 1 0.000075 0.000075 PETSc Krylov solver | 1 14.425106 14.425106 SCOTCH: call SCOTCH_dgraphBuild | 1 0.030899 0.030899 SCOTCH: call SCOTCH_dgraphHalo | 1 0.055922 0.055922 SCOTCH: call SCOTCH_dgraphPart | 1 13.999173 13.999173 SparsityPattern::assemble | 1 0.086574 0.086574 Topology: create | 1 0.565159 0.565159 Topology: determine shared index ownership | 1 0.182722 0.182722 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.014201 0.014201 ZZZ Assemble matrix | 1 0.707100 0.707100 ZZZ Assemble vector | 1 0.023993 0.023993 ZZZ Create Mesh | 1 15.879354 15.879354 ZZZ Create RHS function | 1 0.135025 0.135025 ZZZ Create boundary conditions | 1 0.155647 0.155647 ZZZ Create facets and facet->cell connectivity | 1 0.514355 0.514355 ZZZ Create forms | 1 0.000101 0.000101 ZZZ Create near-nullspace | 1 0.860468 0.860468 ZZZ FunctionSpace | 1 0.437263 0.437263 ZZZ Solve | 1 14.702131 14.702131 *** Number of Krylov iterations: 20 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos1-amd64 with 3 processors, by pbuilder1 Wed May 10 15:43:28 2023 Using Petsc Release Version 3.18.5, Feb 27, 2023 Max Max/Min Avg Total Time (sec): 3.367e+01 1.000 3.366e+01 Objects: 4.630e+02 1.004 4.617e+02 Flops: 2.161e+08 1.088 2.075e+08 6.226e+08 Flops/sec: 6.419e+06 1.088 6.165e+06 1.849e+07 MPI Msg Count: 7.930e+02 1.044 7.713e+02 2.314e+03 MPI Msg Len (bytes): 6.818e+06 1.535 6.995e+03 1.619e+07 MPI Reductions: 6.330e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 3.3663e+01 100.0% 6.2256e+08 100.0% 2.314e+03 100.0% 6.995e+03 100.0% 6.150e+02 97.2% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 103 1.0 1.6387e+00 1.0 0.00e+00 0.0 1.4e+02 4.0e+00 1.0e+02 5 0 6 0 16 5 0 6 0 17 0 BuildTwoSidedF 86 1.0 1.3208e+00 1.1 0.00e+00 0.0 1.1e+02 3.7e+04 8.6e+01 4 0 5 26 14 4 0 5 26 14 0 MatMult 208 1.0 2.8766e+00 1.1 1.17e+08 1.1 1.3e+03 5.2e+03 2.0e+00 8 54 55 41 0 8 54 55 41 0 118 MatMultAdd 42 1.0 3.9652e-01 1.4 9.72e+06 1.0 1.7e+02 1.3e+03 0.0e+00 1 5 7 1 0 1 5 7 1 0 72 MatMultTranspose 42 1.0 5.2831e-01 1.1 9.73e+06 1.0 1.8e+02 1.3e+03 2.0e+00 2 5 8 1 0 2 5 8 1 0 54 MatSolve 21 0.0 4.1084e-03 0.0 2.12e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 517 MatLUFactorSym 1 1.0 1.5167e-02 678.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 1.4174e-02 4610.9 7.16e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 505 MatConvert 1 1.0 3.5419e-02 1.5 0.00e+00 0.0 1.2e+01 6.8e+02 1.0e+00 0 0 1 0 0 0 0 1 0 0 0 MatScale 4 1.0 8.4818e-03 8.6 4.63e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 161 MatResidual 42 1.0 5.6848e-01 1.1 2.27e+07 1.1 2.5e+02 5.0e+03 0.0e+00 2 10 11 8 0 2 10 11 8 0 115 MatAssemblyBegin 59 1.0 7.0319e-01 1.2 0.00e+00 0.0 1.1e+02 3.7e+04 3.0e+01 2 0 5 26 5 2 0 5 26 5 0 MatAssemblyEnd 59 1.0 1.5340e+00 1.1 1.08e+05 2.3 0.0e+00 0.0e+00 9.6e+01 4 0 0 0 15 4 0 0 0 16 0 MatGetRowIJ 1 0.0 6.4816e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 9.7855e-02 1.0 0.00e+00 0.0 1.0e+01 4.0e+04 2.8e+01 0 0 0 2 4 0 0 0 2 5 0 MatGetOrdering 1 0.0 1.7701e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 1.9959e+00 1.0 1.38e+05 1.0 2.3e+02 7.2e+02 9.6e+01 6 0 10 1 15 6 0 10 1 16 0 MatZeroEntries 3 1.0 6.1907e-04 2.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 3.1980e-02 7.2 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 4 1.0 2.3947e-01 1.1 1.14e+05 1.0 0.0e+00 0.0e+00 1.2e+01 1 0 0 0 2 1 0 0 0 2 1 MatTranspose 10 1.0 7.3568e-01 1.0 0.00e+00 0.0 9.0e+01 2.0e+03 3.2e+01 2 0 4 1 5 2 0 4 1 5 0 MatMatMultSym 9 1.0 7.1904e-01 1.0 0.00e+00 0.0 5.1e+01 1.1e+04 2.8e+01 2 0 2 4 4 2 0 2 4 5 0 MatMatMultNum 3 1.0 1.1806e-01 1.2 6.49e+06 1.1 1.5e+01 2.4e+04 3.0e+00 0 3 1 2 0 0 3 1 2 0 158 MatPtAPSymbolic 3 1.0 1.5068e+00 1.0 0.00e+00 0.0 9.9e+01 3.4e+04 2.1e+01 4 0 4 21 3 4 0 4 21 3 0 MatPtAPNumeric 3 1.0 1.0985e+00 1.0 6.04e+07 1.2 3.0e+01 9.0e+04 1.5e+01 3 26 1 17 2 3 26 1 17 2 146 MatGetLocalMat 9 1.0 4.8540e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 9 1.0 2.9813e-01 1.2 0.00e+00 0.0 1.2e+02 3.0e+04 1.0e+00 1 0 5 22 0 1 0 5 22 0 0 VecMDot 20 1.0 3.3039e-01 1.1 1.19e+06 1.0 0.0e+00 0.0e+00 2.0e+01 1 1 0 0 3 1 1 0 0 3 11 VecTDot 40 1.0 4.3889e-01 1.2 8.19e+05 1.0 0.0e+00 0.0e+00 4.0e+01 1 0 0 0 6 1 0 0 0 7 5 VecNorm 43 1.0 5.9381e-01 1.1 6.68e+05 1.0 0.0e+00 0.0e+00 4.3e+01 2 0 0 0 7 2 0 0 0 7 3 VecScale 22 1.0 4.8049e-04 1.0 1.19e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 729 VecCopy 130 1.0 1.3679e-02 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 194 1.0 6.8856e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 42 1.0 1.8306e-03 1.0 8.40e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1346 VecAYPX 271 1.0 1.7922e-02 2.2 2.20e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 362 VecAXPBYCZ 84 1.0 2.4159e-03 1.0 2.27e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2767 VecMAXPY 22 1.0 2.1516e-03 1.2 1.41e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1924 VecAssemblyBegin 57 1.0 8.1318e-01 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 5.6e+01 2 0 0 0 9 2 0 0 0 9 0 VecAssemblyEnd 57 1.0 5.3169e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 190 1.0 5.3824e-03 1.0 1.03e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 562 VecScatterBegin 350 1.0 2.2343e-01 1.4 0.00e+00 0.0 1.8e+03 4.0e+03 8.0e+00 1 0 79 45 1 1 0 79 45 1 0 VecScatterEnd 350 1.0 3.8585e+00 1.2 1.25e+04 2.6 0.0e+00 0.0e+00 0.0e+00 11 0 0 0 0 11 0 0 0 0 0 VecNormalize 22 1.0 3.9059e-01 1.3 3.57e+05 1.0 0.0e+00 0.0e+00 2.2e+01 1 0 0 0 3 1 0 0 0 4 3 SFSetGraph 35 1.0 3.0255e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 17 1.0 5.6851e-01 1.5 0.00e+00 0.0 1.6e+02 4.7e+02 1.7e+01 1 0 7 0 3 1 0 7 0 3 0 SFBcastBegin 14 1.0 3.7962e-04 1.1 0.00e+00 0.0 8.4e+01 6.4e+02 0.0e+00 0 0 4 0 0 0 0 4 0 0 0 SFBcastEnd 14 1.0 2.1790e-01 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 SFReduceBegin 4 1.0 1.4159e-04 1.0 0.00e+00 0.0 1.8e+01 5.2e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 SFReduceEnd 4 1.0 7.1803e-02 2.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 368 1.0 1.4706e-02 6.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 368 1.0 1.1435e-03 1.2 1.25e+04 2.6 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 25 KSPSetUp 7 1.0 5.1930e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 KSPSolve 1 1.0 3.9418e+00 1.0 1.36e+08 1.1 1.5e+03 4.4e+03 6.7e+01 12 64 64 40 11 12 64 64 40 11 100 KSPGMRESOrthog 20 1.0 3.3251e-01 1.1 2.38e+06 1.0 0.0e+00 0.0e+00 2.0e+01 1 1 0 0 3 1 1 0 0 3 21 PCSetUp_GAMG+ 1 1.0 1.0422e+01 1.0 8.11e+07 1.2 8.0e+02 1.1e+04 5.0e+02 31 35 34 53 79 31 35 34 53 81 21 PCGAMGCreateG 2 1.0 7.8766e-01 1.0 4.96e+04 1.0 6.0e+01 2.8e+03 4.4e+01 2 0 3 1 7 2 0 3 1 7 0 GAMG Coarsen 2 1.0 1.9972e+00 1.0 1.38e+05 1.0 2.3e+02 7.2e+02 9.6e+01 6 0 10 1 15 6 0 10 1 16 0 GAMG MIS/Agg 2 1.0 1.9960e+00 1.0 1.38e+05 1.0 2.3e+02 7.2e+02 9.6e+01 6 0 10 1 15 6 0 10 1 16 0 PCGAMGProl 2 1.0 3.4028e+00 1.0 0.00e+00 0.0 1.9e+02 1.6e+03 1.9e+02 10 0 8 2 30 10 0 8 2 31 0 GAMG Prol-col 2 1.0 3.0796e+00 1.0 0.00e+00 0.0 1.8e+02 6.1e+02 1.7e+02 9 0 8 1 27 9 0 8 1 28 0 GAMG Prol-lift 2 1.0 1.9993e-01 1.0 0.00e+00 0.0 1.2e+01 1.7e+04 1.0e+01 1 0 1 1 2 1 0 1 1 2 0 PCGAMGOptProl 2 1.0 1.7852e+00 1.0 2.07e+07 1.1 1.9e+02 8.1e+03 8.2e+01 5 10 8 10 13 5 10 8 10 13 34 GAMG smooth 2 1.0 5.7564e-01 1.0 7.01e+06 1.1 4.8e+01 1.9e+04 2.6e+01 2 3 2 6 4 2 3 2 6 4 35 PCGAMGCreateL 2 1.0 2.4359e+00 1.0 6.02e+07 1.2 1.2e+02 5.3e+04 7.7e+01 7 26 5 39 12 7 26 5 39 13 66 GAMG PtAP 2 1.0 2.3369e+00 1.0 6.02e+07 1.2 9.6e+01 6.2e+04 2.4e+01 7 26 4 37 4 7 26 4 37 4 69 GAMG Reduce 1 1.0 9.9152e-02 1.0 0.00e+00 0.0 2.5e+01 1.7e+04 5.3e+01 0 0 1 3 8 0 0 1 3 9 0 PCGAMG Gal l00 1 1.0 1.9170e+00 1.0 3.52e+07 1.0 4.8e+01 8.0e+04 1.2e+01 6 17 2 24 2 6 17 2 24 2 55 PCGAMG Opt l00 1 1.0 3.8340e-01 1.0 5.07e+06 1.0 2.4e+01 3.1e+04 1.0e+01 1 2 1 5 2 1 2 1 5 2 39 PCGAMG Gal l01 1 1.0 4.2004e-01 1.0 2.52e+07 1.7 4.8e+01 4.4e+04 1.2e+01 1 9 2 13 2 1 9 2 13 2 131 PCGAMG Opt l01 1 1.0 7.6049e-02 1.4 1.50e+06 1.5 2.4e+01 7.2e+03 1.0e+01 0 1 1 1 2 0 1 1 1 2 47 PCSetUp 2 1.0 1.0447e+01 1.0 8.11e+07 1.2 8.0e+02 1.1e+04 5.0e+02 31 37 34 53 79 31 37 34 53 81 22 PCSetUpOnBlocks 21 1.0 2.9856e-02 84.9 7.16e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 240 PCApply 21 1.0 3.0439e+00 1.0 1.17e+08 1.1 1.4e+03 4.0e+03 6.0e+00 9 54 59 34 1 9 54 59 34 1 111 --- Event Stage 1: Unknown ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 12 12 Matrix 106 106 Matrix Coarsen 2 2 Matrix Null Space 1 1 Index Set 75 75 IS L to G Mapping 6 6 Vector 187 187 Star Forest Graph 43 43 Krylov Solver 7 7 Preconditioner 7 7 Viewer 3 2 PetscRandom 2 2 Distributed Mesh 4 4 Discrete System 4 4 Weak Form 4 4 --- Event Stage 1: Unknown ======================================================================================================================== Average time to get PetscTime(): 7.4e-08 Average time for MPI_Barrier(): 3.7392e-06 Average time for zero size MPI_Send(): 4.60267e-06 #PETSc Option Table entries: --ndofs 10000 --problem_type elasticity --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2023-03-05 14:16:00 on reproducible Machine characteristics: Linux-5.10.0-21-amd64-x86_64-with-glibc2.36 Using PETSc directory: /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/trilinos -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/x86_64-linux-gnu/12 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -ltrilinos_ml -lfftw3 -lfftw3_mpi -llapack -lblas -ltrilinos_zoltan -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 --problem_type elasticity --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 4 unused database options. They are: Option left: name:--ndofs value: 10000 Option left: name:--problem_type value: elasticity Option left: name:--scaling_type value: weak Option left: name:-mg_levels_esteig_ksp_type value: cg 2023-05-10 15:43:42.764 ( 49.081s) [RANK: 0 ] loguru.cpp:526 INFO| atexit ==== elasticity strong scaling (3 processes with ndofs=30000) ==== 2023-05-10 15:43:44.441 ( 0.852s) [RANK: 0 ] utils.cpp:612 INFO| Compute partition of cells across ranks 2023-05-10 15:43:44.441 ( 0.852s) [RANK: 0 ] graphbuild.cpp:533 INFO| Building mesh dual graph 2023-05-10 15:43:44.441 ( 0.852s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2023-05-10 15:43:44.552 ( 0.963s) [RANK: 0 ] graphbuild.cpp:89 INFO| Build nonlocal part of mesh dual graph 2023-05-10 15:43:44.575 ( 0.986s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:43:44.594 ( 1.005s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:43:44.595 ( 1.006s) [RANK: 0 ] graphbuild.cpp:203 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2023-05-10 15:43:44.729 ( 1.140s) [RANK: 0 ] graphbuild.cpp:545 INFO| Graph edges (local: 66332, non-local: 962) 2023-05-10 15:43:44.729 ( 1.140s) [RANK: 0 ] partitioners.cpp:316 INFO| Compute graph partition using PT-SCOTCH 2023-05-10 15:43:58.712 ( 15.123s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2023-05-10 15:43:58.750 ( 15.161s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2023-05-10 15:43:58.821 ( 15.232s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2023-05-10 15:43:58.945 ( 15.356s) [RANK: 0 ] ordering.cpp:202 INFO| GPS pseudo-diameter:(119) 1320-16923 2023-05-10 15:43:58.962 ( 15.373s) [RANK: 0 ] Topology.cpp:923 INFO| Create topology 2023-05-10 15:43:58.990 ( 15.401s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2023-05-10 15:43:59.023 ( 15.434s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2023-05-10 15:43:59.257 ( 15.668s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:43:59.266 ( 15.677s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:43:59.266 ( 15.677s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:43:59.266 ( 15.677s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:43:59.269 ( 15.680s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:43:59.269 ( 15.680s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:43:59.269 ( 15.680s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-10 15:43:59.269 ( 15.680s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-10 15:43:59.270 ( 15.681s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:43:59.270 ( 15.681s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:43:59.286 ( 15.697s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-10 15:43:59.286 ( 15.697s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-10 15:43:59.286 ( 15.697s) [RANK: 0 ] MPI.h:368 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2023-05-10 15:43:59.286 ( 15.697s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:43:59.290 ( 15.701s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:43:59.291 ( 15.701s) [RANK: 0 ] MPI.h:500 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 2023-05-10 15:43:59.304 ( 15.715s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 2 UnitCube (24x19x19) to be refined 0 times 2023-05-10 15:43:59.319 ( 15.730s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:43:59.329 ( 15.740s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:43:59.483 ( 15.894s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:43:59.483 ( 15.894s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:43:59.485 ( 15.896s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-10 15:43:59.485 ( 15.896s) [RANK: 0 ]topologycomputation.cpp:650 INFO| Computing mesh connectivity 2 - 3 from transpose. 2023-05-10 15:43:59.487 ( 15.898s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 0 2023-05-10 15:43:59.490 ( 15.901s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:43:59.490 ( 15.901s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:43:59.499 ( 15.910s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:43:59.499 ( 15.910s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:43:59.499 ( 15.910s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-10 15:43:59.499 ( 15.910s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-10 15:43:59.500 ( 15.911s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:43:59.500 ( 15.911s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:43:59.501 ( 15.912s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2023-05-10 15:43:59.501 ( 15.912s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2023-05-10 15:43:59.501 ( 15.912s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 0 2023-05-10 15:43:59.502 ( 15.913s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-10 15:43:59.565 ( 15.976s) [RANK: 0 ] SparsityPattern.cpp:389 INFO| Column ghost size increased from 205 to 537 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.5.2 dolfinx hash: debian_1:0.5.2-2+b1 ufl hash: da4f06cb7b24fd71359bedaeafbca801c698ea33 petsc version: Petsc Release Version 3.18.5, Feb 27, 2023 Problem type: elasticity Scaling type: strong Num processes: 3 Num cells: 51984 (52 thousand) Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- 2023-05-10 15:44:00.119 ( 16.530s) [RANK: 0 ] petsc.cpp:677 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = -1. -1. -1. Threshold scaling factor for each level not specified = 1. AGG specific options Number of levels to square graph 1 Number smoothing steps 1 Complexity: grid = 1.0666 operator = 1.26323 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 3 MPI processes type: bjacobi number of blocks = 3 Local solver information for first block is in the following KSP and PC objects on rank 0: Use -mg_coarse_ksp_view ::ascii_info_detail to display information for all blocks KSP Object: (mg_coarse_sub_) 1 MPI process type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI process type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.05589 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=228, cols=228, bs=6 package used to perform factorization: petsc total: nonzeros=50328, allocated nonzeros=50328 using I-node routines: found 58 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=228, cols=228, bs=6 total: nonzeros=47664, allocated nonzeros=47664 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 71 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=228, cols=228, bs=6 total: nonzeros=47664, allocated nonzeros=47664 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 71 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev eigenvalue targets used: min 0.225083, max 2.47591 eigenvalues provided (min 9.67182e-07, max 2.25083) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=1770, cols=1770, bs=6 total: nonzeros=281772, allocated nonzeros=281772 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 178 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev eigenvalue targets used: min 0.258314, max 2.84145 eigenvalues provided (min 0.0694752, max 2.58314) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3395 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3395 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh | 1 14.873213 14.873213 Build dofmap data | 2 0.008078 0.016157 Build sparsity | 1 0.025458 0.025458 Compute connectivity 2-3 | 1 0.000873 0.000873 Compute dof reordering map | 2 0.000259 0.000518 Compute entities of dim = 2 | 1 0.181245 0.181245 Compute graph partition (SCOTCH) | 1 13.951200 13.951200 Compute local part of mesh dual graph | 2 0.112277 0.224553 Compute local-to-local map | 1 0.000589 0.000589 Compute non-local part of mesh dual graph | 1 0.201877 0.201877 Compute-local-to-global links for global/local adjacency list | 1 0.000472 0.000472 Distribute AdjacencyList nodes to destination ranks | 1 0.140453 0.140453 Distribute row-wise data (scalable) | 1 0.017466 0.017466 Extract partition boundaries from SCOTCH graph | 1 0.000907 0.000907 GPS: create_level_structure | 5 0.006667 0.015160 Get SCOTCH graph data | 1 0.000027 0.000027 Gibbs-Poole-Stockmeyer ordering | 1 0.030115 0.030115 Init MPI | 1 0.710174 0.710174 Init PETSc | 1 0.171797 0.171797 Init dofmap from element dofmap | 2 0.002018 0.004036 Init logging | 1 0.000073 0.000073 PETSc Krylov solver | 1 6.663605 6.663605 SCOTCH: call SCOTCH_dgraphBuild | 1 0.030469 0.030469 SCOTCH: call SCOTCH_dgraphHalo | 1 0.063858 0.063858 SCOTCH: call SCOTCH_dgraphPart | 1 13.887147 13.887147 SparsityPattern::assemble | 1 0.023145 0.023145 Topology: create | 1 0.311169 0.311169 Topology: determine shared index ownership | 1 0.219857 0.219857 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.014258 0.014258 ZZZ Assemble matrix | 1 0.439757 0.439757 ZZZ Assemble vector | 1 0.016085 0.016085 ZZZ Create Mesh | 1 14.873344 14.873344 ZZZ Create RHS function | 1 0.040769 0.040769 ZZZ Create boundary conditions | 1 0.004176 0.004176 ZZZ Create facets and facet->cell connectivity | 1 0.182230 0.182230 ZZZ Create forms | 1 0.000135 0.000135 ZZZ Create near-nullspace | 1 0.047938 0.047938 ZZZ FunctionSpace | 1 0.014198 0.014198 ZZZ Solve | 1 6.679505 6.679505 *** Number of Krylov iterations: 21 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos1-amd64 with 3 processors, by pbuilder1 Wed May 10 15:44:06 2023 Using Petsc Release Version 3.18.5, Feb 27, 2023 Max Max/Min Avg Total Time (sec): 2.241e+01 1.000 2.240e+01 Objects: 4.630e+02 1.004 4.617e+02 Flops: 2.205e+08 1.095 2.098e+08 6.294e+08 Flops/sec: 9.840e+06 1.094 9.364e+06 2.809e+07 MPI Msg Count: 8.190e+02 1.044 7.967e+02 2.390e+03 MPI Msg Len (bytes): 6.739e+06 1.486 6.798e+03 1.625e+07 MPI Reductions: 6.370e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 2.2404e+01 100.0% 6.2936e+08 100.0% 2.390e+03 100.0% 6.798e+03 100.0% 6.190e+02 97.2% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 103 1.0 6.4609e-01 3.3 0.00e+00 0.0 1.4e+02 4.0e+00 1.0e+02 2 0 6 0 16 2 0 6 0 17 0 BuildTwoSidedF 86 1.0 5.8549e-01 4.2 0.00e+00 0.0 1.1e+02 3.6e+04 8.6e+01 2 0 5 25 14 2 0 5 25 14 0 MatMult 217 1.0 2.4146e+00 1.1 1.23e+08 1.1 1.3e+03 5.2e+03 2.0e+00 10 56 55 42 0 10 56 55 42 0 145 MatMultAdd 44 1.0 3.8821e-01 1.3 1.02e+07 1.1 1.8e+02 1.3e+03 0.0e+00 1 5 7 1 0 1 5 7 1 0 76 MatMultTranspose 44 1.0 4.9741e-01 1.1 1.02e+07 1.1 1.9e+02 1.2e+03 2.0e+00 2 5 8 1 0 2 5 8 1 0 59 MatSolve 22 0.0 5.5023e-03 0.0 2.21e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 402 MatLUFactorSym 1 1.0 2.9223e-03 125.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 2.6415e-02 6369.7 7.00e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 265 MatConvert 1 1.0 7.9600e-04 1.1 0.00e+00 0.0 1.2e+01 6.7e+02 1.0e+00 0 0 1 0 0 0 0 1 0 0 0 MatScale 4 1.0 1.1090e-03 1.1 4.62e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1209 MatResidual 44 1.0 5.3474e-01 1.0 2.38e+07 1.1 2.6e+02 5.0e+03 0.0e+00 2 11 11 8 0 2 11 11 8 0 126 MatAssemblyBegin 59 1.0 5.3951e-01 4.4 0.00e+00 0.0 1.1e+02 3.6e+04 3.0e+01 1 0 5 25 5 1 0 5 25 5 0 MatAssemblyEnd 59 1.0 4.6677e-01 1.1 9.85e+04 2.2 0.0e+00 0.0e+00 9.6e+01 2 0 0 0 15 2 0 0 0 16 0 MatGetRowIJ 1 0.0 6.8187e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 1.3099e-01 1.1 0.00e+00 0.0 1.0e+01 4.2e+04 2.8e+01 1 0 0 3 4 1 0 0 3 5 0 MatGetOrdering 1 0.0 1.7909e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 1.2839e-01 1.0 1.38e+05 1.0 2.4e+02 7.0e+02 9.7e+01 1 0 10 1 15 1 0 10 1 16 3 MatZeroEntries 3 1.0 4.5925e-03 23.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 6.7376e-02 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 4 1.0 7.3251e-02 1.2 1.14e+05 1.0 0.0e+00 0.0e+00 1.2e+01 0 0 0 0 2 0 0 0 0 2 5 MatTranspose 10 1.0 2.6871e-02 1.1 0.00e+00 0.0 9.0e+01 2.0e+03 3.2e+01 0 0 4 1 5 0 0 4 1 5 0 MatMatMultSym 9 1.0 3.5860e-01 1.1 0.00e+00 0.0 5.1e+01 1.1e+04 2.8e+01 2 0 2 4 4 2 0 2 4 5 0 MatMatMultNum 3 1.0 3.8626e-02 1.3 6.50e+06 1.1 1.5e+01 2.4e+04 3.0e+00 0 3 1 2 0 0 3 1 2 0 477 MatPtAPSymbolic 3 1.0 6.8637e-01 1.0 0.00e+00 0.0 9.9e+01 3.3e+04 2.1e+01 3 0 4 20 3 3 0 4 20 3 0 MatPtAPNumeric 3 1.0 8.3037e-01 1.0 5.78e+07 1.3 3.0e+01 8.5e+04 1.5e+01 4 24 1 16 2 4 24 1 16 2 185 MatGetLocalMat 9 1.0 4.9133e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 9 1.0 5.6185e-02 1.1 0.00e+00 0.0 1.2e+02 2.9e+04 1.0e+00 0 0 5 22 0 0 0 5 22 0 0 VecMDot 20 1.0 7.9265e-02 1.8 1.18e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 44 VecTDot 42 1.0 4.3026e-01 1.1 8.55e+05 1.0 0.0e+00 0.0e+00 4.2e+01 2 0 0 0 7 2 0 0 0 7 6 VecNorm 44 1.0 3.6558e-01 1.5 6.84e+05 1.0 0.0e+00 0.0e+00 4.4e+01 1 0 0 0 7 1 0 0 0 7 6 VecScale 22 1.0 2.4157e-04 1.1 1.18e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1447 VecCopy 136 1.0 1.4196e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 203 1.0 6.9200e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 44 1.0 2.2436e-03 1.2 8.77e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1152 VecAYPX 284 1.0 1.4749e-02 2.1 2.29e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 460 VecAXPBYCZ 88 1.0 2.7884e-03 1.1 2.36e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2507 VecMAXPY 22 1.0 1.2096e-03 1.2 1.39e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 3414 VecAssemblyBegin 57 1.0 8.4147e-02 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 5.6e+01 0 0 0 0 9 0 0 0 0 9 0 VecAssemblyEnd 57 1.0 1.6534e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 198 1.0 1.8041e-02 3.2 1.06e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 174 VecScatterBegin 363 1.0 1.0655e-01 1.2 0.00e+00 0.0 1.9e+03 4.0e+03 8.0e+00 0 0 79 46 1 0 0 79 46 1 0 VecScatterEnd 363 1.0 2.7515e+00 1.0 1.36e+04 2.6 0.0e+00 0.0e+00 0.0e+00 12 0 0 0 0 12 0 0 0 0 0 VecNormalize 22 1.0 5.2392e-02 1.2 3.54e+05 1.0 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 3 0 0 0 0 4 20 SFSetGraph 35 1.0 2.8575e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 17 1.0 1.0939e-01 1.2 0.00e+00 0.0 1.6e+02 4.7e+02 1.7e+01 0 0 7 0 3 0 0 7 0 3 0 SFBcastBegin 15 1.0 1.3984e-04 1.1 0.00e+00 0.0 9.0e+01 6.0e+02 0.0e+00 0 0 4 0 0 0 0 4 0 0 0 SFBcastEnd 15 1.0 9.7606e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 4 1.0 8.5457e-05 1.2 0.00e+00 0.0 1.8e+01 5.2e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 SFReduceEnd 4 1.0 3.3471e-03 50.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 382 1.0 2.9203e-03 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 382 1.0 4.2392e-03 4.7 1.36e+04 2.6 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 7 KSPSetUp 7 1.0 6.0945e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 KSPSolve 1 1.0 3.8067e+00 1.0 1.40e+08 1.1 1.6e+03 4.4e+03 7.0e+01 17 65 65 42 11 17 65 65 42 11 108 KSPGMRESOrthog 20 1.0 8.0514e-02 1.8 2.36e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 87 PCSetUp_GAMG+ 1 1.0 2.6927e+00 1.0 7.87e+07 1.2 8.0e+02 1.0e+04 5.0e+02 12 34 34 52 79 12 34 34 52 81 79 PCGAMGCreateG 2 1.0 1.1598e-01 1.0 5.02e+04 1.0 6.0e+01 2.8e+03 4.4e+01 1 0 3 1 7 1 0 3 1 7 1 GAMG Coarsen 2 1.0 1.2942e-01 1.0 1.38e+05 1.0 2.4e+02 7.0e+02 9.7e+01 1 0 10 1 15 1 0 10 1 16 3 GAMG MIS/Agg 2 1.0 1.2843e-01 1.0 1.38e+05 1.0 2.4e+02 7.0e+02 9.7e+01 1 0 10 1 15 1 0 10 1 16 3 PCGAMGProl 2 1.0 3.1020e-01 1.0 0.00e+00 0.0 1.9e+02 1.8e+03 1.9e+02 1 0 8 2 30 1 0 8 2 30 0 GAMG Prol-col 2 1.0 2.3545e-01 1.0 0.00e+00 0.0 1.8e+02 6.6e+02 1.7e+02 1 0 8 1 27 1 0 8 1 27 0 GAMG Prol-lift 2 1.0 7.4295e-02 1.1 0.00e+00 0.0 1.2e+01 1.8e+04 1.0e+01 0 0 1 1 2 0 0 1 1 2 0 PCGAMGOptProl 2 1.0 5.6146e-01 1.0 2.08e+07 1.1 1.9e+02 8.1e+03 8.2e+01 2 9 8 10 13 2 9 8 10 13 106 GAMG smooth 2 1.0 3.2833e-01 1.0 7.02e+06 1.1 4.8e+01 1.9e+04 2.6e+01 1 3 2 6 4 1 3 2 6 4 61 PCGAMGCreateL 2 1.0 1.5771e+00 1.0 5.77e+07 1.3 1.2e+02 5.1e+04 7.7e+01 7 24 5 38 12 7 24 5 38 12 97 GAMG PtAP 2 1.0 1.4216e+00 1.0 5.77e+07 1.3 9.6e+01 5.9e+04 2.4e+01 6 24 4 35 4 6 24 4 35 4 108 GAMG Reduce 1 1.0 1.5553e-01 1.0 0.00e+00 0.0 2.5e+01 1.8e+04 5.3e+01 1 0 1 3 8 1 0 1 3 9 0 PCGAMG Gal l00 1 1.0 9.2908e-01 1.0 3.53e+07 1.1 4.8e+01 7.6e+04 1.2e+01 4 16 2 22 2 4 16 2 22 2 111 PCGAMG Opt l00 1 1.0 1.6279e-01 1.0 5.06e+06 1.0 2.4e+01 3.1e+04 1.0e+01 1 2 1 5 2 1 2 1 5 2 92 PCGAMG Gal l01 1 1.0 4.9356e-01 1.0 2.24e+07 1.8 4.8e+01 4.3e+04 1.2e+01 2 8 2 13 2 2 8 2 13 2 102 PCGAMG Opt l01 1 1.0 1.3249e-01 1.0 1.44e+06 1.6 2.4e+01 7.5e+03 1.0e+01 1 1 1 1 2 1 1 1 1 2 26 PCSetUp 2 1.0 2.7223e+00 1.0 7.87e+07 1.1 8.0e+02 1.0e+04 5.0e+02 12 35 34 52 79 12 35 34 52 81 81 PCSetUpOnBlocks 22 1.0 2.9768e-02 104.3 7.00e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 235 PCApply 22 1.0 2.9151e+00 1.0 1.20e+08 1.1 1.4e+03 4.0e+03 6.0e+00 13 56 60 35 1 13 56 60 35 1 120 --- Event Stage 1: Unknown ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 12 12 Matrix 106 106 Matrix Coarsen 2 2 Matrix Null Space 1 1 Index Set 75 75 IS L to G Mapping 6 6 Vector 187 187 Star Forest Graph 43 43 Krylov Solver 7 7 Preconditioner 7 7 Viewer 3 2 PetscRandom 2 2 Distributed Mesh 4 4 Discrete System 4 4 Weak Form 4 4 --- Event Stage 1: Unknown ======================================================================================================================== Average time to get PetscTime(): 7.66e-08 Average time for MPI_Barrier(): 3.158e-06 Average time for zero size MPI_Send(): 1.54533e-06 #PETSc Option Table entries: --ndofs 30000 --problem_type elasticity --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2023-03-05 14:16:00 on reproducible Machine characteristics: Linux-5.10.0-21-amd64-x86_64-with-glibc2.36 Using PETSc directory: /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/trilinos -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/x86_64-linux-gnu/12 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -ltrilinos_ml -lfftw3 -lfftw3_mpi -llapack -lblas -ltrilinos_zoltan -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 30000 --problem_type elasticity --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 4 unused database options. They are: Option left: name:--ndofs value: 30000 Option left: name:--problem_type value: elasticity Option left: name:--scaling_type value: strong Option left: name:-mg_levels_esteig_ksp_type value: cg 2023-05-10 15:44:08.428 ( 24.839s) [RANK: 0 ] loguru.cpp:526 INFO| atexit ==== poisson weak scaling (3 processes with ndofs=10000) ==== 2023-05-10 15:44:09.862 ( 0.786s) [RANK: 0 ] utils.cpp:612 INFO| Compute partition of cells across ranks 2023-05-10 15:44:09.862 ( 0.786s) [RANK: 0 ] graphbuild.cpp:533 INFO| Building mesh dual graph 2023-05-10 15:44:09.862 ( 0.786s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2023-05-10 15:44:10.159 ( 1.083s) [RANK: 0 ] graphbuild.cpp:89 INFO| Build nonlocal part of mesh dual graph 2023-05-10 15:44:10.171 ( 1.095s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:44:10.194 ( 1.118s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:44:10.194 ( 1.118s) [RANK: 0 ] graphbuild.cpp:203 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2023-05-10 15:44:10.292 ( 1.216s) [RANK: 0 ] graphbuild.cpp:545 INFO| Graph edges (local: 210000, non-local: 1800) 2023-05-10 15:44:10.292 ( 1.216s) [RANK: 0 ] partitioners.cpp:316 INFO| Compute graph partition using PT-SCOTCH 2023-05-10 15:44:29.120 ( 20.044s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2023-05-10 15:44:29.142 ( 20.066s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2023-05-10 15:44:29.238 ( 20.161s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2023-05-10 15:44:29.532 ( 20.455s) [RANK: 0 ] ordering.cpp:202 INFO| GPS pseudo-diameter:(162) 1626-51330 2023-05-10 15:44:29.583 ( 20.507s) [RANK: 0 ] Topology.cpp:923 INFO| Create topology 2023-05-10 15:44:29.659 ( 20.582s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2023-05-10 15:44:29.686 ( 20.610s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2023-05-10 15:44:30.038 ( 20.962s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:44:30.126 ( 21.050s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:44:30.171 ( 21.094s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:44:30.198 ( 21.122s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:44:30.299 ( 21.223s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:44:30.330 ( 21.254s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:44:30.442 ( 21.366s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-10 15:44:30.462 ( 21.386s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-10 15:44:30.619 ( 21.542s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:44:30.658 ( 21.582s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:44:30.775 ( 21.698s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-10 15:44:30.806 ( 21.730s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-10 15:44:30.807 ( 21.730s) [RANK: 0 ] MPI.h:368 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2023-05-10 15:44:30.855 ( 21.779s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:44:30.886 ( 21.810s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:44:30.886 ( 21.810s) [RANK: 0 ] MPI.h:500 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 2023-05-10 15:44:31.111 ( 22.035s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 2 UnitCube (30x30x30) to be refined 0 times 2023-05-10 15:44:31.255 ( 22.179s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:44:31.282 ( 22.206s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:44:32.003 ( 22.926s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:44:32.035 ( 22.958s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:44:32.154 ( 23.078s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-10 15:44:32.154 ( 23.078s) [RANK: 0 ]topologycomputation.cpp:650 INFO| Computing mesh connectivity 2 - 3 from transpose. 2023-05-10 15:44:32.158 ( 23.081s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 0 2023-05-10 15:44:32.207 ( 23.131s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:44:32.258 ( 23.182s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:44:32.387 ( 23.310s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:44:32.414 ( 23.338s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:44:32.499 ( 23.422s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-10 15:44:32.518 ( 23.442s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-10 15:44:32.799 ( 23.722s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:44:32.830 ( 23.754s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:44:33.070 ( 23.994s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2023-05-10 15:44:33.072 ( 23.995s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2023-05-10 15:44:33.072 ( 23.995s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 0 2023-05-10 15:44:33.073 ( 23.996s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-10 15:44:33.667 ( 24.591s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-10 15:44:33.667 ( 24.591s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 2 2023-05-10 15:44:33.667 ( 24.591s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:44:33.718 ( 24.642s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:44:34.172 ( 25.095s) [RANK: 0 ] SparsityPattern.cpp:389 INFO| Column ghost size increased from 465 to 1296 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.5.2 dolfinx hash: debian_1:0.5.2-2+b1 ufl hash: da4f06cb7b24fd71359bedaeafbca801c698ea33 petsc version: Petsc Release Version 3.18.5, Feb 27, 2023 Problem type: poisson Scaling type: weak Num processes: 3 Num cells: 162000 (162 thousand) Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- 2023-05-10 15:44:35.479 ( 26.402s) [RANK: 0 ] petsc.cpp:677 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical SpGEMM type cusparse linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=29791, cols=29791 total: nonzeros=424171, allocated nonzeros=424171 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh | 1 21.283498 21.283498 Build dofmap data | 2 0.605650 1.211300 Build sparsity | 1 0.120214 0.120214 Compute connectivity 2-3 | 1 0.011561 0.011561 Compute dof reordering map | 2 0.000806 0.001613 Compute entities of dim = 2 | 1 1.059322 1.059322 Compute graph partition (SCOTCH) | 1 18.791633 18.791633 Compute local part of mesh dual graph | 2 0.289185 0.578371 Compute local-to-local map | 1 0.013855 0.013855 Compute non-local part of mesh dual graph | 1 0.154788 0.154788 Compute-local-to-global links for global/local adjacency list | 1 0.001526 0.001526 Distribute AdjacencyList nodes to destination ranks | 1 0.153009 0.153009 Distribute row-wise data (scalable) | 1 0.276614 0.276614 Extract partition boundaries from SCOTCH graph | 1 0.002126 0.002126 GPS: create_level_structure | 2 0.006375 0.038250 Get SCOTCH graph data | 1 0.000020 0.000020 Gibbs-Poole-Stockmeyer ordering | 1 0.079163 0.079163 Init MPI | 1 0.622770 0.622770 Init PETSc | 1 0.152659 0.152659 Init dofmap from element dofmap | 2 0.030576 0.061152 Init logging | 1 0.000064 0.000064 PETSc Krylov solver | 1 14.419807 14.419807 SCOTCH: call SCOTCH_dgraphBuild | 1 0.027126 0.027126 SCOTCH: call SCOTCH_dgraphHalo | 1 0.107892 0.107892 SCOTCH: call SCOTCH_dgraphPart | 1 18.726697 18.726697 SparsityPattern::assemble | 1 0.276586 0.276586 Topology: create | 1 0.705318 0.705318 Topology: determine shared index ownership | 1 0.187367 0.187367 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.033626 0.033626 ZZZ Assemble | 1 2.098891 2.098891 ZZZ Assemble matrix | 1 0.547210 0.547210 ZZZ Assemble vector | 1 0.087950 0.087950 ZZZ Create Mesh | 1 21.283662 21.283662 ZZZ Create RHS function | 1 0.543246 0.543246 ZZZ Create boundary conditions | 1 0.223021 0.223021 ZZZ Create facets and facet->cell connectivity | 1 1.071006 1.071006 ZZZ FunctionSpace | 1 0.766559 0.766559 ZZZ Solve | 1 14.720252 14.720252 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos1-amd64 with 3 processors, by pbuilder1 Wed May 10 15:44:49 2023 Using Petsc Release Version 3.18.5, Feb 27, 2023 Max Max/Min Avg Total Time (sec): 4.010e+01 1.000 4.009e+01 Objects: 3.200e+01 1.000 3.200e+01 Flops: 3.500e+06 1.026 3.449e+06 1.035e+07 Flops/sec: 8.730e+04 1.026 8.602e+04 2.581e+05 MPI Msg Count: 2.800e+01 1.000 2.800e+01 8.400e+01 MPI Msg Len (bytes): 1.919e+05 1.181 6.462e+03 5.428e+05 MPI Reductions: 6.700e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 4.0092e+01 100.0% 1.0346e+07 100.0% 8.400e+01 100.0% 6.462e+03 100.0% 4.900e+01 73.1% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 4 1.0 1.1671e-01 1.6 0.00e+00 0.0 1.8e+01 4.0e+00 4.0e+00 0 0 21 0 6 0 0 21 0 8 0 BuildTwoSidedF 2 1.0 5.7266e-02 1.8 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 14 49 3 0 0 14 49 4 0 MatMult 7 1.0 1.3213e-01 1.0 1.94e+06 1.0 5.4e+01 4.8e+03 1.0e+00 0 55 64 47 1 0 55 64 47 2 43 MatConvert 1 1.0 2.8778e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 3 1 0 0 0 4 0 MatAssemblyBegin 3 1.0 6.8650e-02 1.5 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 14 49 3 0 0 14 49 4 0 MatAssemblyEnd 3 1.0 3.4546e-01 1.1 3.74e+03 1.2 0.0e+00 0.0e+00 6.0e+00 1 0 0 0 9 1 0 0 0 12 0 MatGetRowIJ 2 1.0 4.4850e-06 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 2.4037e-02 2.0 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 VecTDot 14 1.0 1.1139e-01 1.1 2.82e+05 1.0 0.0e+00 0.0e+00 1.4e+01 0 8 0 0 21 0 8 0 0 29 7 VecNorm 8 1.0 1.1346e-01 1.4 1.61e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 12 0 5 0 0 16 4 VecCopy 2 1.0 1.1286e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 9 1.0 1.4276e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 6.4598e-04 1.1 2.82e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 1291 VecAYPX 6 1.0 6.6746e-04 2.2 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 536 VecScatterBegin 8 1.0 9.2155e-02 1.4 0.00e+00 0.0 7.2e+01 3.8e+03 2.0e+00 0 0 86 51 3 0 0 86 51 4 0 VecScatterEnd 8 1.0 1.0233e-01 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 8.4940e-05 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 2 1.0 9.1712e-02 1.4 0.00e+00 0.0 2.4e+01 9.8e+02 2.0e+00 0 0 29 4 3 0 0 29 4 4 0 SFPack 8 1.0 1.3668e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 8 1.0 3.6591e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 1 1.0 1.5573e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 6.0039e+00 1.0 2.78e+06 1.0 5.4e+01 4.8e+03 2.3e+01 15 80 64 47 34 15 80 64 47 47 1 PCSetUp 1 1.0 8.3517e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 21 0 0 0 3 21 0 0 0 4 0 PCApply 8 1.0 5.6800e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 14 0 0 0 0 14 0 0 0 0 0 --- Event Stage 1: Unknown ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 4 4 Index Set 6 6 IS L to G Mapping 3 3 Vector 12 12 Star Forest Graph 3 3 Krylov Solver 1 1 Preconditioner 1 1 Viewer 2 1 --- Event Stage 1: Unknown ======================================================================================================================== Average time to get PetscTime(): 7.44e-08 Average time for MPI_Barrier(): 3.2548e-06 Average time for zero size MPI_Send(): 6.37233e-06 #PETSc Option Table entries: --ndofs 10000 --problem_type poisson --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2023-03-05 14:16:00 on reproducible Machine characteristics: Linux-5.10.0-21-amd64-x86_64-with-glibc2.36 Using PETSc directory: /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/trilinos -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/x86_64-linux-gnu/12 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -ltrilinos_ml -lfftw3 -lfftw3_mpi -llapack -lblas -ltrilinos_zoltan -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 --problem_type poisson --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 10000 Option left: name:--problem_type value: poisson Option left: name:--scaling_type value: weak 2023-05-10 15:44:50.513 ( 41.437s) [RANK: 0 ] loguru.cpp:526 INFO| atexit ==== poisson strong scaling (3 processes with ndofs=30000) ==== 2023-05-10 15:44:52.082 ( 0.876s) [RANK: 0 ] utils.cpp:612 INFO| Compute partition of cells across ranks 2023-05-10 15:44:52.082 ( 0.876s) [RANK: 0 ] graphbuild.cpp:533 INFO| Building mesh dual graph 2023-05-10 15:44:52.082 ( 0.876s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2023-05-10 15:44:52.480 ( 1.273s) [RANK: 0 ] graphbuild.cpp:89 INFO| Build nonlocal part of mesh dual graph 2023-05-10 15:44:52.495 ( 1.289s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:44:52.526 ( 1.320s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:44:52.526 ( 1.320s) [RANK: 0 ] graphbuild.cpp:203 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2023-05-10 15:44:52.640 ( 1.434s) [RANK: 0 ] graphbuild.cpp:545 INFO| Graph edges (local: 210000, non-local: 1800) 2023-05-10 15:44:52.640 ( 1.434s) [RANK: 0 ] partitioners.cpp:316 INFO| Compute graph partition using PT-SCOTCH 2023-05-10 15:45:12.317 ( 21.110s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2023-05-10 15:45:12.338 ( 21.132s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2023-05-10 15:45:12.398 ( 21.192s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2023-05-10 15:45:12.619 ( 21.413s) [RANK: 0 ] ordering.cpp:202 INFO| GPS pseudo-diameter:(169) 50547-237 2023-05-10 15:45:12.653 ( 21.447s) [RANK: 0 ] Topology.cpp:923 INFO| Create topology 2023-05-10 15:45:12.668 ( 21.462s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2023-05-10 15:45:12.694 ( 21.488s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2023-05-10 15:45:12.930 ( 21.724s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:45:12.942 ( 21.736s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:45:12.966 ( 21.760s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:45:12.982 ( 21.776s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:45:13.025 ( 21.819s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:45:13.038 ( 21.832s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:45:13.078 ( 21.872s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-10 15:45:13.090 ( 21.884s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-10 15:45:13.151 ( 21.945s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:45:13.166 ( 21.960s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:45:13.231 ( 22.024s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-10 15:45:13.242 ( 22.036s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-10 15:45:13.242 ( 22.036s) [RANK: 0 ] MPI.h:368 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2023-05-10 15:45:13.275 ( 22.069s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:45:13.290 ( 22.084s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:45:13.290 ( 22.084s) [RANK: 0 ] MPI.h:500 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 2023-05-10 15:45:13.383 ( 22.176s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 2 UnitCube (30x30x30) to be refined 0 times 2023-05-10 15:45:13.462 ( 22.256s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:45:13.463 ( 22.257s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:45:13.855 ( 22.649s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:45:13.890 ( 22.684s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:45:13.946 ( 22.740s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-10 15:45:13.954 ( 22.748s) [RANK: 0 ]topologycomputation.cpp:650 INFO| Computing mesh connectivity 2 - 3 from transpose. 2023-05-10 15:45:13.958 ( 22.752s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 0 2023-05-10 15:45:13.973 ( 22.767s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:45:13.998 ( 22.792s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:45:14.043 ( 22.836s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:45:14.062 ( 22.856s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:45:14.122 ( 22.916s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-10 15:45:14.138 ( 22.932s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-10 15:45:14.250 ( 23.044s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:45:14.266 ( 23.060s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:45:14.390 ( 23.184s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2023-05-10 15:45:14.392 ( 23.186s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2023-05-10 15:45:14.392 ( 23.186s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 0 2023-05-10 15:45:14.393 ( 23.187s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-10 15:45:14.867 ( 23.660s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-10 15:45:14.867 ( 23.660s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 2 2023-05-10 15:45:14.867 ( 23.661s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-10 15:45:14.886 ( 23.680s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-10 15:45:15.186 ( 23.980s) [RANK: 0 ] SparsityPattern.cpp:389 INFO| Column ghost size increased from 451 to 1248 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.5.2 dolfinx hash: debian_1:0.5.2-2+b1 ufl hash: da4f06cb7b24fd71359bedaeafbca801c698ea33 petsc version: Petsc Release Version 3.18.5, Feb 27, 2023 Problem type: poisson Scaling type: strong Num processes: 3 Num cells: 162000 (162 thousand) Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- 2023-05-10 15:45:16.203 ( 24.996s) [RANK: 0 ] petsc.cpp:677 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical SpGEMM type cusparse linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=29791, cols=29791 total: nonzeros=424171, allocated nonzeros=424171 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh | 1 21.331487 21.331487 Build dofmap data | 2 0.270792 0.541584 Build sparsity | 1 0.084778 0.084778 Compute connectivity 2-3 | 1 0.011478 0.011478 Compute dof reordering map | 2 0.000756 0.001511 Compute entities of dim = 2 | 1 0.575563 0.575563 Compute graph partition (SCOTCH) | 1 19.638600 19.638600 Compute local part of mesh dual graph | 2 0.295074 0.590147 Compute local-to-local map | 1 0.001817 0.001817 Compute non-local part of mesh dual graph | 1 0.202193 0.202193 Compute-local-to-global links for global/local adjacency list | 1 0.001555 0.001555 Distribute AdjacencyList nodes to destination ranks | 1 0.117276 0.117276 Distribute row-wise data (scalable) | 1 0.124418 0.124418 Extract partition boundaries from SCOTCH graph | 1 0.002302 0.002302 GPS: create_level_structure | 6 0.006414 0.019687 Get SCOTCH graph data | 1 0.000015 0.000015 Gibbs-Poole-Stockmeyer ordering | 1 0.039052 0.039052 Init MPI | 1 0.723874 0.723874 Init PETSc | 1 0.128901 0.128901 Init dofmap from element dofmap | 2 0.017693 0.035387 Init logging | 1 0.000062 0.000062 PETSc Krylov solver | 1 4.156851 4.156851 SCOTCH: call SCOTCH_dgraphBuild | 1 0.019118 0.019118 SCOTCH: call SCOTCH_dgraphHalo | 1 0.035939 0.035939 SCOTCH: call SCOTCH_dgraphPart | 1 19.580934 19.580934 SparsityPattern::assemble | 1 0.165577 0.165577 Topology: create | 1 0.399227 0.399227 Topology: determine shared index ownership | 1 0.142292 0.142292 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.016142 0.016142 ZZZ Assemble | 1 1.586902 1.586902 ZZZ Assemble matrix | 1 0.404177 0.404177 ZZZ Assemble vector | 1 0.055991 0.055991 ZZZ Create Mesh | 1 21.331621 21.331621 ZZZ Create RHS function | 1 0.419625 0.419625 ZZZ Create boundary conditions | 1 0.155003 0.155003 ZZZ Create facets and facet->cell connectivity | 1 0.578638 0.578638 ZZZ FunctionSpace | 1 0.346261 0.346261 ZZZ Solve | 1 4.373046 4.373046 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos1-amd64 with 3 processors, by pbuilder1 Wed May 10 15:45:20 2023 Using Petsc Release Version 3.18.5, Feb 27, 2023 Max Max/Min Avg Total Time (sec): 2.830e+01 1.000 2.830e+01 Objects: 3.200e+01 1.000 3.200e+01 Flops: 3.518e+06 1.032 3.449e+06 1.035e+07 Flops/sec: 1.243e+05 1.032 1.219e+05 3.656e+05 MPI Msg Count: 2.800e+01 1.000 2.800e+01 8.400e+01 MPI Msg Len (bytes): 1.888e+05 1.198 6.312e+03 5.302e+05 MPI Reductions: 6.700e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 2.8301e+01 100.0% 1.0348e+07 100.0% 8.400e+01 100.0% 6.312e+03 100.0% 4.900e+01 73.1% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 4 1.0 5.2845e-02 1.5 0.00e+00 0.0 1.8e+01 4.0e+00 4.0e+00 0 0 21 0 6 0 0 21 0 8 0 BuildTwoSidedF 2 1.0 5.2838e-02 1.5 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 14 49 3 0 0 14 49 4 0 MatMult 7 1.0 3.0357e-02 1.2 1.95e+06 1.0 5.4e+01 4.6e+03 1.0e+00 0 55 64 47 1 0 55 64 47 2 189 MatConvert 1 1.0 2.2770e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 3 1 0 0 0 4 0 MatAssemblyBegin 3 1.0 6.7517e-02 1.5 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 14 49 3 0 0 14 49 4 0 MatAssemblyEnd 3 1.0 2.4095e-01 1.1 3.74e+03 1.2 0.0e+00 0.0e+00 6.0e+00 1 0 0 0 9 1 0 0 0 12 0 MatGetRowIJ 2 1.0 4.4740e-06 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 3.8885e-03 20.1 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 VecTDot 14 1.0 2.0254e-02 2.4 2.83e+05 1.0 0.0e+00 0.0e+00 1.4e+01 0 8 0 0 21 0 8 0 0 29 41 VecNorm 8 1.0 2.4555e-02 44.5 1.62e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 12 0 5 0 0 16 19 VecCopy 2 1.0 8.1436e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 9 1.0 1.2033e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 5.1039e-04 1.2 2.83e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 1634 VecAYPX 6 1.0 1.7967e-04 1.2 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 1990 VecScatterBegin 8 1.0 5.9977e-04 1.2 0.00e+00 0.0 7.2e+01 3.7e+03 2.0e+00 0 0 86 51 3 0 0 86 51 4 0 VecScatterEnd 8 1.0 1.9857e-02 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 7.7722e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 2 1.0 3.3242e-04 1.4 0.00e+00 0.0 2.4e+01 9.6e+02 2.0e+00 0 0 29 4 3 0 0 29 4 4 0 SFPack 8 1.0 9.4712e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 8 1.0 1.5931e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 1 1.0 1.7039e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 8.1221e-01 1.0 2.80e+06 1.0 5.4e+01 4.6e+03 2.3e+01 3 80 64 47 34 3 80 64 47 47 10 PCSetUp 1 1.0 3.3434e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 12 0 0 0 3 12 0 0 0 4 0 PCApply 8 1.0 7.6107e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 3 0 0 0 0 3 0 0 0 0 0 --- Event Stage 1: Unknown ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 4 4 Index Set 6 6 IS L to G Mapping 3 3 Vector 12 12 Star Forest Graph 3 3 Krylov Solver 1 1 Preconditioner 1 1 Viewer 2 1 --- Event Stage 1: Unknown ======================================================================================================================== Average time to get PetscTime(): 8.59e-08 Average time for MPI_Barrier(): 3.8128e-06 Average time for zero size MPI_Send(): 6.505e-06 #PETSc Option Table entries: --ndofs 30000 --problem_type poisson --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2023-03-05 14:16:00 on reproducible Machine characteristics: Linux-5.10.0-21-amd64-x86_64-with-glibc2.36 Using PETSc directory: /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/trilinos -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/x86_64-linux-gnu/12 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -ltrilinos_ml -lfftw3 -lfftw3_mpi -llapack -lblas -ltrilinos_zoltan -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 30000 --problem_type poisson --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 30000 Option left: name:--problem_type value: poisson Option left: name:--scaling_type value: strong 2023-05-10 15:45:20.520 ( 29.314s) [RANK: 0 ] loguru.cpp:526 INFO| atexit make[1]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake -O--sourcedirectory=src dh_prep -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_install -O--buildsystem=cmake -O--sourcedirectory=src cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/fenicsx-performance-tests-0.5.0\~git20220731.821823b/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' /usr/bin/cmake -S"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -B"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/debian/tmp/usr/bin/dolfinx-scaling-test make[1]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' dh_install -O--buildsystem=cmake -O--sourcedirectory=src dh_installdocs -O--buildsystem=cmake -O--sourcedirectory=src dh_installchangelogs -O--buildsystem=cmake -O--sourcedirectory=src dh_installman -O--buildsystem=cmake -O--sourcedirectory=src dh_installsystemduser -O--buildsystem=cmake -O--sourcedirectory=src dh_perl -O--buildsystem=cmake -O--sourcedirectory=src dh_link -O--buildsystem=cmake -O--sourcedirectory=src dh_strip_nondeterminism -O--buildsystem=cmake -O--sourcedirectory=src dh_compress -O--buildsystem=cmake -O--sourcedirectory=src dh_fixperms -O--buildsystem=cmake -O--sourcedirectory=src dh_missing -O--buildsystem=cmake -O--sourcedirectory=src dh_dwz -a -O--buildsystem=cmake -O--sourcedirectory=src dh_strip -a -O--buildsystem=cmake -O--sourcedirectory=src dh_makeshlibs -a -O--buildsystem=cmake -O--sourcedirectory=src dh_shlibdeps -a -O--buildsystem=cmake -O--sourcedirectory=src dh_installdeb -O--buildsystem=cmake -O--sourcedirectory=src dh_gencontrol -O--buildsystem=cmake -O--sourcedirectory=src dh_md5sums -O--buildsystem=cmake -O--sourcedirectory=src dh_builddeb -O--buildsystem=cmake -O--sourcedirectory=src dpkg-deb: building package 'fenicsx-performance-tests-source' in '../fenicsx-performance-tests-source_0.5.0~git20220731.821823b-1_all.deb'. dpkg-deb: building package 'fenicsx-performance-tests-dbgsym' in '../fenicsx-performance-tests-dbgsym_0.5.0~git20220731.821823b-1_amd64.deb'. dpkg-deb: building package 'fenicsx-performance-tests' in '../fenicsx-performance-tests_0.5.0~git20220731.821823b-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../fenicsx-performance-tests_0.5.0~git20220731.821823b-1_amd64.buildinfo dpkg-genchanges --build=binary -O../fenicsx-performance-tests_0.5.0~git20220731.821823b-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1990128 and its subdirectories I: Current time: Wed May 10 15:45:58 -12 2023 I: pbuilder-time-stamp: 1683776758 Thu May 11 03:45:58 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Thu May 11 03:45:58 UTC 2023 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Thu May 11 03:54:11 UTC 2023 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Thu May 11 03:54:12 UTC 2023 I: fenicsx-performance-tests_0.5.0~git20220731.821823b-1_amd64.changes: Format: 1.8 Date: Thu, 22 Sep 2022 13:53:55 +0200 Source: fenicsx-performance-tests Binary: fenicsx-performance-tests fenicsx-performance-tests-dbgsym fenicsx-performance-tests-source Architecture: amd64 all Version: 0.5.0~git20220731.821823b-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Team Changed-By: Drew Parsons Description: fenicsx-performance-tests - Performance test codes for FEniCS/DOLFIN-X (binaries) fenicsx-performance-tests-source - Performance test codes for FEniCS/DOLFIN-X (source) Changes: fenicsx-performance-tests (0.5.0~git20220731.821823b-1) unstable; urgency=medium . * New upstream snapshot for dolfinx 0.5 Checksums-Sha1: 6c0b04b2b5168e7c4de64cfb189acac4079fd933 5182920 fenicsx-performance-tests-dbgsym_0.5.0~git20220731.821823b-1_amd64.deb abe38b32e157cf151f678d464c54d419aadf2772 14500 fenicsx-performance-tests-source_0.5.0~git20220731.821823b-1_all.deb 81bd3241e15d14e27b111eef2d85861450b50bf0 15026 fenicsx-performance-tests_0.5.0~git20220731.821823b-1_amd64.buildinfo 75878579f100f23cb55078b8e87d6798cc7217e0 221712 fenicsx-performance-tests_0.5.0~git20220731.821823b-1_amd64.deb Checksums-Sha256: cdf128aaedac6dbf6b5925e92a0fa566ccd4771e6b2431f34134a1c99988017e 5182920 fenicsx-performance-tests-dbgsym_0.5.0~git20220731.821823b-1_amd64.deb 708d7fae8b5a21d4fa23c15e54f7b166427a46ac7b16a4563871aebde377a21a 14500 fenicsx-performance-tests-source_0.5.0~git20220731.821823b-1_all.deb 83b702f3b2f455eef661aa2459cbb3b25b365dc9f043086883c27ef91ee46c19 15026 fenicsx-performance-tests_0.5.0~git20220731.821823b-1_amd64.buildinfo e993ebe4ca8c0dfbabafc760af3e36d68303edd5c4d305095f10a14ebb659acf 221712 fenicsx-performance-tests_0.5.0~git20220731.821823b-1_amd64.deb Files: 23ed4d36697120ca7ce08e145fe719fd 5182920 debug optional fenicsx-performance-tests-dbgsym_0.5.0~git20220731.821823b-1_amd64.deb d3d1745908a2f23000a820b00f536331 14500 libdevel optional fenicsx-performance-tests-source_0.5.0~git20220731.821823b-1_all.deb 49abb80a57dd91bb11b28813ce36f103 15026 libdevel optional fenicsx-performance-tests_0.5.0~git20220731.821823b-1_amd64.buildinfo 2f8a5dba4fbcaf5c092f627fc9822741 221712 libdevel optional fenicsx-performance-tests_0.5.0~git20220731.821823b-1_amd64.deb Thu May 11 03:54:13 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.TkNc4fkX/fenicsx-performance-tests_0.5.0~git20220731.821823b-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.TkNc4fkX/fenicsx-performance-tests_0.5.0~git20220731.821823b-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.TkNc4fkX/fenicsx-performance-tests_0.5.0~git20220731.821823b-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.TkNc4fkX/b1/fenicsx-performance-tests_0.5.0~git20220731.821823b-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.TkNc4fkX/b2/fenicsx-performance-tests_0.5.0~git20220731.821823b-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.376s) 0.376s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.074s) 0.074s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Thu May 11 03:54:15 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Thu May 11 03:54:15 UTC 2023 I: fenicsx-performance-tests from bookworm built successfully and reproducibly on amd64. Thu May 11 03:54:15 UTC 2023 I: Submitting .buildinfo files to external archives: Thu May 11 03:54:15 UTC 2023 I: Submitting 16K b1/fenicsx-performance-tests_0.5.0~git20220731.821823b-1_amd64.buildinfo.asc Thu May 11 03:54:17 UTC 2023 I: Submitting 16K b2/fenicsx-performance-tests_0.5.0~git20220731.821823b-1_amd64.buildinfo.asc Thu May 11 03:54:18 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu May 11 03:54:18 UTC 2023 I: Done submitting .buildinfo files. Thu May 11 03:54:18 UTC 2023 I: Removing signed fenicsx-performance-tests_0.5.0~git20220731.821823b-1_amd64.buildinfo.asc files: removed './b1/fenicsx-performance-tests_0.5.0~git20220731.821823b-1_amd64.buildinfo.asc' removed './b2/fenicsx-performance-tests_0.5.0~git20220731.821823b-1_amd64.buildinfo.asc'