Thu Apr 20 06:49:10 UTC 2023 I: starting to build dwgsim/bookworm/amd64 on jenkins on '2023-04-20 06:49' Thu Apr 20 06:49:10 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_28/6234/console.log Thu Apr 20 06:49:10 UTC 2023 I: Downloading source for bookworm/dwgsim=0.1.14-2 --2023-04-20 06:49:11-- http://cdn-fastly.deb.debian.org/debian/pool/main/d/dwgsim/dwgsim_0.1.14-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1997 (2.0K) [text/prs.lines.tag] Saving to: ‘dwgsim_0.1.14-2.dsc’ 0K . 100% 130M=0s 2023-04-20 06:49:11 (130 MB/s) - ‘dwgsim_0.1.14-2.dsc’ saved [1997/1997] Thu Apr 20 06:49:11 UTC 2023 I: dwgsim_0.1.14-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: dwgsim Binary: dwgsim Architecture: any Version: 0.1.14-2 Maintainer: Debian Med Packaging Team Uploaders: Kevin Murray Homepage: https://github.com/nh13/DWGSIM/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/dwgsim Vcs-Git: https://salsa.debian.org/med-team/dwgsim.git Testsuite: autopkgtest Testsuite-Triggers: samtools Build-Depends: debhelper-compat (= 13), samtools, zlib1g-dev Package-List: dwgsim deb science optional arch=any Checksums-Sha1: d330122e6299ff51e4107af60b3d6cdc8090cc4c 2206455 dwgsim_0.1.14.orig.tar.gz 4317f15dd9b3faf73d094bb1f804160aeb659000 7536 dwgsim_0.1.14-2.debian.tar.xz Checksums-Sha256: a974a253bf6bcd5a2162f9ebc6c78c56a29c541850f375a45ddb2b649574ce1b 2206455 dwgsim_0.1.14.orig.tar.gz 4ccd060af2a5cd7c469c68aab9c330e3ec88bc6351b2dab357fb587946f8b88a 7536 dwgsim_0.1.14-2.debian.tar.xz Files: 741f201d279ad66a0dfe490ac7ed7c7f 2206455 dwgsim_0.1.14.orig.tar.gz b19d6f16ff4ace13776e80e0284a2638 7536 dwgsim_0.1.14-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmL/V6ESHG5pbGVzaEBk ZWJpYW4ub3JnAAoJEAC650s0M2nxdHwQAKprKXtMSZ8lBDTPUtIjjvfDxo7Uju+E JFgBwMLjQuZ97lP0NANzI36NB1AccjzD26+B4Qw7D8zKNiKp04jTxnZ/v6D857Mq 0Au/RT1tAghjQ3PxUotCYztGZUVY1M9XTvXqM8GVIExhF3/Vr+qqrmVAYRJpcojs MyS56s5FBnfMiv1ZocWZYGMpqVGpYxnWhTY2k+d2omzo5tVYSt4KWI1FHL7aUDih gkR5x0tBt1Xzpo1irwuHiX6bEcDohwrY0BWtpcEUZo02DuYUElBQep7rXeZpf+L+ GMG+e2GDymMASLXmQSodSht0EZayOedE90nsyDkqzfmNUJu7iYeqdUpe4eur3fHl 4Ai6MQnTQeAXFaNOAAcqsgCgOxS4GOZJyhGnjUcu/tYG/pBMJB5hnDfucVIWOMGa OGTKoMtDMZBWQPJxl+Pr1H9IH0X1SxzNhYFMAZ4gJ8vw+yCqIkgAQpZfbRiJ1FXX T4Dw8GoA4qHaFh1QWtz7vZOH7/pwOFGC+B8mp2Cj1bovy8V9xDK525MXiRyQ1n41 OFEGAl1ZDGpnYJkrhuM8lXG+pP5hHj4CgBX3/DA+daDOVna9ICmE0wT9UH8Gsk7b a/pXom0FmDzGU7t5LdqyzFdi3mSe70d3lyMvn+l+/+Oo6Uiy1AeYrZMC0QZpchg+ nybyVd6QPBOI =F2ea -----END PGP SIGNATURE----- Thu Apr 20 06:49:11 UTC 2023 I: Checking whether the package is not for us Thu Apr 20 06:49:11 UTC 2023 I: Starting 1st build on remote node ionos15-amd64.debian.net. Thu Apr 20 06:49:11 UTC 2023 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Thu Apr 20 06:49:41 UTC 2023 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed May 22 01:12:12 -12 2024 I: pbuilder-time-stamp: 1716383532 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dwgsim_0.1.14-2.dsc] I: copying [./dwgsim_0.1.14.orig.tar.gz] I: copying [./dwgsim_0.1.14-2.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Aug 18 21:28:01 2022 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./dwgsim_0.1.14-2.dsc: no acceptable signature found dpkg-source: info: extracting dwgsim in dwgsim-0.1.14 dpkg-source: info: unpacking dwgsim_0.1.14.orig.tar.gz dpkg-source: info: unpacking dwgsim_0.1.14-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Debian-ise-makefile.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying remove-privacy-breach-links.patch dpkg-source: info: applying copy-samtools-test-properly.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3702309/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='639ff0897ac8405c92950cfb5c7f1f6e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3702309' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ArpIyJZI/pbuilderrc_2w0l --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ArpIyJZI/b1 --logfile b1/build.log dwgsim_0.1.14-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 6.1.0-0.deb11.5-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.12-1~bpo11+1 (2023-03-05) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Feb 12 2023 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 2023 more -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Feb 12 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/3702309/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), samtools, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libfile-stripnondeterminism-perl{a} libhts3{a} libhtscodecs2{a} libicu72{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} samtools{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 22.2 MB of archives. After unpacking 80.2 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b3 [687 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.88.1-8 [380 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libhtscodecs2 amd64 1.3.0-4 [87.5 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 libhts3 amd64 1.16+ds-3 [430 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libncurses6 amd64 6.4-2 [103 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 samtools amd64 1.16.1-1 [607 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Fetched 22.2 MB in 0s (73.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../02-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/dwgsim-0.1.14/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dwgsim_0.1.14-2_source.changes dpkg-buildpackage: info: source package dwgsim dpkg-buildpackage: info: source version 0.1.14-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j16 clean make[1]: Entering directory '/build/dwgsim-0.1.14' rm -vfr gmon.out *.o a.out *.exe *.dSYM razip bgzip dwgsim *~ *.a *.so.* *.so *.dylib; make[1]: Leaving directory '/build/dwgsim-0.1.14' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/dwgsim-0.1.14' sed -i 's/occour/occur/' src/dwgsim_opt.c sed -i 's/occour/occur/' debian/dwgsim.1 dh_auto_build make -j16 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/dwgsim-0.1.14' cc -c -g -O2 -ffile-prefix-map=/build/dwgsim-0.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.14-2\" src/dwgsim_opt.c -o src/dwgsim_opt.o cc -c -g -O2 -ffile-prefix-map=/build/dwgsim-0.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.14-2\" src/mut.c -o src/mut.o In file included from src/dwgsim_opt.c:36: src/mut.h:62:1: warning: inline function 'mut_get_ins_long_n' declared but never defined 62 | mut_get_ins_long_n(uint8_t *ins, uint32_t *n); | ^~~~~~~~~~~~~~~~~~ src/mut.h:59:1: warning: inline function 'mut_get_ins_bytes' declared but never defined 59 | mut_get_ins_bytes(int32_t n); | ^~~~~~~~~~~~~~~~~ cc -c -g -O2 -ffile-prefix-map=/build/dwgsim-0.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.14-2\" src/contigs.c -o src/contigs.o cc -c -g -O2 -ffile-prefix-map=/build/dwgsim-0.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.14-2\" src/regions_bed.c -o src/regions_bed.o cc -c -g -O2 -ffile-prefix-map=/build/dwgsim-0.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.14-2\" src/mut_txt.c -o src/mut_txt.o cc -c -g -O2 -ffile-prefix-map=/build/dwgsim-0.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.14-2\" src/mut_bed.c -o src/mut_bed.o In file included from src/mut_txt.c:36: src/mut.h:62:1: warning: inline function 'mut_get_ins_long_n' declared but never defined 62 | mut_get_ins_long_n(uint8_t *ins, uint32_t *n); | ^~~~~~~~~~~~~~~~~~ src/mut.h:59:1: warning: inline function 'mut_get_ins_bytes' declared but never defined 59 | mut_get_ins_bytes(int32_t n); | ^~~~~~~~~~~~~~~~~ In file included from src/mut_bed.c:33: src/mut.h:62:1: warning: inline function 'mut_get_ins_long_n' declared but never defined 62 | mut_get_ins_long_n(uint8_t *ins, uint32_t *n); | ^~~~~~~~~~~~~~~~~~ src/mut.h:59:1: warning: inline function 'mut_get_ins_bytes' declared but never defined 59 | mut_get_ins_bytes(int32_t n); | ^~~~~~~~~~~~~~~~~ cc -c -g -O2 -ffile-prefix-map=/build/dwgsim-0.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.14-2\" src/mut_vcf.c -o src/mut_vcf.o cc -c -g -O2 -ffile-prefix-map=/build/dwgsim-0.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.14-2\" src/mut_input.c -o src/mut_input.o In file included from src/mut_vcf.c:36: src/mut.h:62:1: warning: inline function 'mut_get_ins_long_n' declared but never defined 62 | mut_get_ins_long_n(uint8_t *ins, uint32_t *n); | ^~~~~~~~~~~~~~~~~~ src/mut.h:59:1: warning: inline function 'mut_get_ins_bytes' declared but never defined 59 | mut_get_ins_bytes(int32_t n); | ^~~~~~~~~~~~~~~~~ cc -c -g -O2 -ffile-prefix-map=/build/dwgsim-0.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.14-2\" src/dwgsim.c -o src/dwgsim.o In file included from src/mut_input.c:36: src/mut.h:62:1: warning: inline function 'mut_get_ins_long_n' declared but never defined 62 | mut_get_ins_long_n(uint8_t *ins, uint32_t *n); | ^~~~~~~~~~~~~~~~~~ src/mut.h:59:1: warning: inline function 'mut_get_ins_bytes' declared but never defined 59 | mut_get_ins_bytes(int32_t n); | ^~~~~~~~~~~~~~~~~ src/dwgsim.c: In function 'dwgsim_core': src/dwgsim.c:864:35: warning: initialization of 'FILE *' from incompatible pointer type 'struct gzFile_s **' [-Wincompatible-pointer-types] 864 | FILE *fpo = (0 == j) ? opt->fp_bwa1: opt->fp_bwa2; | ^ src/dwgsim.c:867:38: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 867 | gzprintf(fpo, "@%s%s%s_%u_%u_%1u_%1u_%1u_%1u_%d:%d:%d_%d:%d:%d_%llx/%d\n", | ^~~ | | | FILE * In file included from /usr/include/zlib.h:34, from src/dwgsim.c:44: /usr/include/zlib.h:1468:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1468 | ZEXTERN int ZEXPORTVA gzprintf Z_ARG((gzFile file, const char *format, ...)); | ^~~~~ src/dwgsim.c:875:38: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 875 | gzputc(fpo, "ACGTN"[(int)tmp_seq[j][i]]); | ^~~ | | | FILE * /usr/include/zlib.h:1505:28: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1505 | ZEXTERN int ZEXPORT gzputc OF((gzFile file, int c)); | ^~ src/dwgsim.c:876:38: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 876 | gzprintf(fpo, "\n+\n%s\n", qstr); | ^~~ | | | FILE * /usr/include/zlib.h:1468:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1468 | ZEXTERN int ZEXPORTVA gzprintf Z_ARG((gzFile file, const char *format, ...)); | ^~~~~ src/dwgsim.c:885:38: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 885 | gzprintf(fpo, "@%s%s%s_%u_%u_%1u_%1u_%1u_%1u_%d:%d:%d_%d:%d:%d_%llx/%d\n", | ^~~ | | | FILE * /usr/include/zlib.h:1468:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1468 | ZEXTERN int ZEXPORTVA gzprintf Z_ARG((gzFile file, const char *format, ...)); | ^~~~~ src/dwgsim.c:894:38: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 894 | gzputc(fpo, "ACGTN"[(int)tmp_seq[j][i]]); | ^~~ | | | FILE * /usr/include/zlib.h:1505:28: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1505 | ZEXTERN int ZEXPORT gzputc OF((gzFile file, int c)); | ^~ src/dwgsim.c:895:38: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 895 | gzprintf(fpo, "\n+\n"); | ^~~ | | | FILE * /usr/include/zlib.h:1468:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1468 | ZEXTERN int ZEXPORTVA gzprintf Z_ARG((gzFile file, const char *format, ...)); | ^~~~~ src/dwgsim.c:897:38: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 897 | gzputc(fpo, qstr[i]); | ^~~ | | | FILE * /usr/include/zlib.h:1505:28: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1505 | ZEXTERN int ZEXPORT gzputc OF((gzFile file, int c)); | ^~ src/dwgsim.c:898:38: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 898 | gzprintf(fpo, "\n"); | ^~~ | | | FILE * /usr/include/zlib.h:1468:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1468 | ZEXTERN int ZEXPORTVA gzprintf Z_ARG((gzFile file, const char *format, ...)); | ^~~~~ src/dwgsim.c:904:39: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 904 | gzprintf(opt->fp_bfast, "@%s%s%s_%u_%u_%1u_%1u_%1u_%1u_%d:%d:%d_%d:%d:%d_%llx\n", | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1468:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1468 | ZEXTERN int ZEXPORTVA gzprintf Z_ARG((gzFile file, const char *format, ...)); | ^~~~~ src/dwgsim.c:912:43: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 912 | gzputc(opt->fp_bfast, "ACGTN"[(int)tmp_seq[j][i]]); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1505:28: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1505 | ZEXTERN int ZEXPORT gzputc OF((gzFile file, int c)); | ^~ src/dwgsim.c:913:43: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 913 | gzprintf(opt->fp_bfast, "\n+\n%s\n", qstr); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1468:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1468 | ZEXTERN int ZEXPORTVA gzprintf Z_ARG((gzFile file, const char *format, ...)); | ^~~~~ src/dwgsim.c:916:41: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 916 | gzputc(opt->fp_bfast, 'A'); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1505:28: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1505 | ZEXTERN int ZEXPORT gzputc OF((gzFile file, int c)); | ^~ src/dwgsim.c:918:43: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 918 | gzputc(opt->fp_bfast, "01234"[(int)tmp_seq[j][i]]); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1505:28: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1505 | ZEXTERN int ZEXPORT gzputc OF((gzFile file, int c)); | ^~ src/dwgsim.c:919:43: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 919 | gzprintf(opt->fp_bfast, "\n+\n"); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1468:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1468 | ZEXTERN int ZEXPORTVA gzprintf Z_ARG((gzFile file, const char *format, ...)); | ^~~~~ src/dwgsim.c:921:43: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 921 | gzputc(opt->fp_bfast, qstr[i]); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1505:28: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1505 | ZEXTERN int ZEXPORT gzputc OF((gzFile file, int c)); | ^~ src/dwgsim.c:922:43: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 922 | gzprintf(opt->fp_bfast, "\n"); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1468:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1468 | ZEXTERN int ZEXPORTVA gzprintf Z_ARG((gzFile file, const char *format, ...)); | ^~~~~ src/dwgsim.c:972:35: warning: initialization of 'FILE *' from incompatible pointer type 'struct gzFile_s **' [-Wincompatible-pointer-types] 972 | FILE *fpo = (0 == j) ? opt->fp_bwa1: opt->fp_bwa2; | ^ src/dwgsim.c:975:40: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 975 | gzprintf(fpo, "@%s%s%s_%u_%u_%1u_%1u_%1u_%1u_%d:%d:%d_%d:%d:%d_%llx/%d\n", | ^~~ | | | FILE * /usr/include/zlib.h:1468:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1468 | ZEXTERN int ZEXPORTVA gzprintf Z_ARG((gzFile file, const char *format, ...)); | ^~~~~ src/dwgsim.c:983:40: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 983 | gzputc(fpo, "ACGTN"[(int)tmp_seq[j][i]]); | ^~~ | | | FILE * /usr/include/zlib.h:1505:28: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1505 | ZEXTERN int ZEXPORT gzputc OF((gzFile file, int c)); | ^~ src/dwgsim.c:984:40: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 984 | gzprintf(fpo, "\n+\n%s\n", qstr); | ^~~ | | | FILE * /usr/include/zlib.h:1468:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1468 | ZEXTERN int ZEXPORTVA gzprintf Z_ARG((gzFile file, const char *format, ...)); | ^~~~~ src/dwgsim.c:993:40: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 993 | gzprintf(fpo, "@%s%s%s_%u_%u_%1u_%1u_%1u_%1u_%d:%d:%d_%d:%d:%d_%llx/%d\n", | ^~~ | | | FILE * /usr/include/zlib.h:1468:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1468 | ZEXTERN int ZEXPORTVA gzprintf Z_ARG((gzFile file, const char *format, ...)); | ^~~~~ src/dwgsim.c:1002:40: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 1002 | gzputc(fpo, "ACGTN"[(int)tmp_seq[j][i]]); | ^~~ | | | FILE * /usr/include/zlib.h:1505:28: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1505 | ZEXTERN int ZEXPORT gzputc OF((gzFile file, int c)); | ^~ src/dwgsim.c:1003:40: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 1003 | gzprintf(fpo, "\n+\n"); | ^~~ | | | FILE * /usr/include/zlib.h:1468:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1468 | ZEXTERN int ZEXPORTVA gzprintf Z_ARG((gzFile file, const char *format, ...)); | ^~~~~ src/dwgsim.c:1005:40: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 1005 | gzputc(fpo, qstr[i]); | ^~~ | | | FILE * /usr/include/zlib.h:1505:28: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1505 | ZEXTERN int ZEXPORT gzputc OF((gzFile file, int c)); | ^~ src/dwgsim.c:1006:40: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 1006 | gzprintf(fpo, "\n"); | ^~~ | | | FILE * /usr/include/zlib.h:1468:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1468 | ZEXTERN int ZEXPORTVA gzprintf Z_ARG((gzFile file, const char *format, ...)); | ^~~~~ src/dwgsim.c:1012:39: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 1012 | gzprintf(opt->fp_bfast, "@%s%s%s_%u_%u_%1u_%1u_%1u_%1u_%d:%d:%d_%d:%d:%d_%llx\n", | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1468:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1468 | ZEXTERN int ZEXPORTVA gzprintf Z_ARG((gzFile file, const char *format, ...)); | ^~~~~ src/dwgsim.c:1020:43: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 1020 | gzputc(opt->fp_bfast, "ACGTN"[(int)tmp_seq[j][i]]); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1505:28: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1505 | ZEXTERN int ZEXPORT gzputc OF((gzFile file, int c)); | ^~ src/dwgsim.c:1021:43: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 1021 | gzprintf(opt->fp_bfast, "\n+\n%s\n", qstr); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1468:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1468 | ZEXTERN int ZEXPORTVA gzprintf Z_ARG((gzFile file, const char *format, ...)); | ^~~~~ src/dwgsim.c:1024:41: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 1024 | gzputc(opt->fp_bfast, 'A'); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1505:28: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1505 | ZEXTERN int ZEXPORT gzputc OF((gzFile file, int c)); | ^~ src/dwgsim.c:1026:43: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 1026 | gzputc(opt->fp_bfast, "01234"[(int)tmp_seq[j][i]]); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1505:28: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1505 | ZEXTERN int ZEXPORT gzputc OF((gzFile file, int c)); | ^~ src/dwgsim.c:1027:43: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 1027 | gzprintf(opt->fp_bfast, "\n+\n"); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1468:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1468 | ZEXTERN int ZEXPORTVA gzprintf Z_ARG((gzFile file, const char *format, ...)); | ^~~~~ src/dwgsim.c:1029:43: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 1029 | gzputc(opt->fp_bfast, qstr[i]); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1505:28: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1505 | ZEXTERN int ZEXPORT gzputc OF((gzFile file, int c)); | ^~ src/dwgsim.c:1030:43: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 1030 | gzprintf(opt->fp_bfast, "\n"); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1468:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1468 | ZEXTERN int ZEXPORTVA gzprintf Z_ARG((gzFile file, const char *format, ...)); | ^~~~~ src/dwgsim.c: In function 'main': src/dwgsim.c:1088:25: warning: assignment to 'struct gzFile_s **' from incompatible pointer type 'gzFile' {aka 'struct gzFile_s *'} [-Wincompatible-pointer-types] 1088 | opt->fp_bfast = gzopen(fn_tmp, "w"); | ^ src/dwgsim.c:1092:24: warning: assignment to 'struct gzFile_s **' from incompatible pointer type 'gzFile' {aka 'struct gzFile_s *'} [-Wincompatible-pointer-types] 1092 | opt->fp_bwa1 = gzopen(fn_tmp, "w"); | ^ src/dwgsim.c:1094:24: warning: assignment to 'struct gzFile_s **' from incompatible pointer type 'gzFile' {aka 'struct gzFile_s *'} [-Wincompatible-pointer-types] 1094 | opt->fp_bwa2 = gzopen(fn_tmp, "w"); | ^ src/dwgsim.c:1104:22: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] 1104 | gzclose(opt->fp_bfast); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1631:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1631 | ZEXTERN int ZEXPORT gzclose OF((gzFile file)); | ^~ src/dwgsim.c:1107:22: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] 1107 | gzclose(opt->fp_bwa1); gzclose(opt->fp_bwa2); | ~~~^~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1631:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1631 | ZEXTERN int ZEXPORT gzclose OF((gzFile file)); | ^~ src/dwgsim.c:1107:45: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] 1107 | gzclose(opt->fp_bwa1); gzclose(opt->fp_bwa2); | ~~~^~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1631:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1631 | ZEXTERN int ZEXPORT gzclose OF((gzFile file)); | ^~ In file included from src/dwgsim.c:46: src/mut.h: At top level: src/mut.h:62:1: warning: inline function 'mut_get_ins_long_n' declared but never defined 62 | mut_get_ins_long_n(uint8_t *ins, uint32_t *n); | ^~~~~~~~~~~~~~~~~~ src/mut.h:59:1: warning: inline function 'mut_get_ins_bytes' declared but never defined 59 | mut_get_ins_bytes(int32_t n); | ^~~~~~~~~~~~~~~~~ cc -g -O2 -ffile-prefix-map=/build/dwgsim-0.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -I. -Wl,-z,relro -Wl,-z,now -o dwgsim src/dwgsim_opt.o src/mut.o src/contigs.o src/regions_bed.o src/mut_txt.o src/mut_bed.o src/mut_vcf.o src/mut_input.o src/dwgsim.o -lm -lz -lpthread make[2]: Leaving directory '/build/dwgsim-0.1.14' make[1]: Leaving directory '/build/dwgsim-0.1.14' debian/rules override_dh_auto_test make[1]: Entering directory '/build/dwgsim-0.1.14' ln -s /usr/share/doc/samtools/examples samtools dh_auto_test make -j16 test make[2]: Entering directory '/build/dwgsim-0.1.14' if [ -d tmp ]; then rm -r tmp; fi /bin/bash testdata/test.sh /build/dwgsim-0.1.14/testdata /build/dwgsim-0.1.14 /build/dwgsim-0.1.14 [dwgsim_core] seq1 length: 1575 [dwgsim_core] seq2 length: 1584 [dwgsim_core] 2 sequences, total length: 3159 [dwgsim_core] Currently on: 0 [dwgsim_core] 0 [dwgsim_core] 4986 [dwgsim_core] 10000 [dwgsim_core] Complete! make[2]: Leaving directory '/build/dwgsim-0.1.14' make[1]: Leaving directory '/build/dwgsim-0.1.14' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/dwgsim/ dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dwgsim' in '../dwgsim_0.1.14-2_amd64.deb'. dpkg-deb: building package 'dwgsim-dbgsym' in '../dwgsim-dbgsym_0.1.14-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../dwgsim_0.1.14-2_amd64.buildinfo dpkg-genchanges --build=binary -O../dwgsim_0.1.14-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3702309 and its subdirectories I: Current time: Wed May 22 01:12:41 -12 2024 I: pbuilder-time-stamp: 1716383561 Thu Apr 20 06:49:41 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Thu Apr 20 06:49:41 UTC 2023 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Thu Apr 20 06:51:07 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Thu Apr 20 06:51:08 UTC 2023 I: dwgsim_0.1.14-2_amd64.changes: Format: 1.8 Date: Fri, 19 Aug 2022 14:55:28 +0530 Source: dwgsim Binary: dwgsim dwgsim-dbgsym Architecture: amd64 Version: 0.1.14-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: dwgsim - short sequencing read simulator Changes: dwgsim (0.1.14-2) unstable; urgency=medium . * Team upload. * Get package cross-building + Stop generating html from readme, install rest of docs * Stop B-D on debhelper (there is a B-D on debhelper-compat already) Checksums-Sha1: 1f9be00cea49da64a7519de5ea3672ff9b6a4895 79124 dwgsim-dbgsym_0.1.14-2_amd64.deb 9097728122e87e5e8c8ba12dd91ea8215658738a 5738 dwgsim_0.1.14-2_amd64.buildinfo fb4cc4ff0a4b7a4614d22d5e8e1e2a44832fd796 42632 dwgsim_0.1.14-2_amd64.deb Checksums-Sha256: f0d7b82409a25131be0092d5a06a92d2fa644ed9fc136a609ae2bc905fb72087 79124 dwgsim-dbgsym_0.1.14-2_amd64.deb afbe03b30261109f6dca36059958149157096850e1d26f98df1e105c0dddab86 5738 dwgsim_0.1.14-2_amd64.buildinfo 2fa248dc53172a2ef5cceec3f201e416bbcc8f41edf2845880a073c661060c2b 42632 dwgsim_0.1.14-2_amd64.deb Files: 5f4f22e9b2f109877e616e0da0bc78b1 79124 debug optional dwgsim-dbgsym_0.1.14-2_amd64.deb c2d55fa60307484d118bd11819465ea4 5738 science optional dwgsim_0.1.14-2_amd64.buildinfo 7e22c4f4d2a6cc315394cedad0b9da7c 42632 science optional dwgsim_0.1.14-2_amd64.deb Thu Apr 20 06:51:09 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ArpIyJZI/dwgsim_0.1.14-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ArpIyJZI/dwgsim_0.1.14-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ArpIyJZI/dwgsim_0.1.14-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ArpIyJZI/b1/dwgsim_0.1.14-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ArpIyJZI/b2/dwgsim_0.1.14-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.431s) 0.431s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.021s) 0.021s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Thu Apr 20 06:51:10 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Thu Apr 20 06:51:10 UTC 2023 I: dwgsim from bookworm built successfully and reproducibly on amd64. Thu Apr 20 06:51:11 UTC 2023 I: Submitting .buildinfo files to external archives: Thu Apr 20 06:51:12 UTC 2023 I: Submitting 8.0K b1/dwgsim_0.1.14-2_amd64.buildinfo.asc Thu Apr 20 06:51:12 UTC 2023 I: Submitting 8.0K b2/dwgsim_0.1.14-2_amd64.buildinfo.asc Thu Apr 20 06:51:13 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Apr 20 06:51:13 UTC 2023 I: Done submitting .buildinfo files. Thu Apr 20 06:51:13 UTC 2023 I: Removing signed dwgsim_0.1.14-2_amd64.buildinfo.asc files: removed './b1/dwgsim_0.1.14-2_amd64.buildinfo.asc' removed './b2/dwgsim_0.1.14-2_amd64.buildinfo.asc'