Mon Apr 17 12:44:01 UTC 2023 I: starting to build dialign-t/bookworm/amd64 on jenkins on '2023-04-17 12:43' Mon Apr 17 12:44:01 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_12/31341/console.log Mon Apr 17 12:44:01 UTC 2023 I: Downloading source for bookworm/dialign-t=1.0.2-14 --2023-04-17 12:44:02-- http://cdn-fastly.deb.debian.org/debian/pool/main/d/dialign-t/dialign-t_1.0.2-14.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2081 (2.0K) [text/prs.lines.tag] Saving to: ‘dialign-t_1.0.2-14.dsc’ 0K .. 100% 148M=0s 2023-04-17 12:44:02 (148 MB/s) - ‘dialign-t_1.0.2-14.dsc’ saved [2081/2081] Mon Apr 17 12:44:02 UTC 2023 I: dialign-t_1.0.2-14.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: dialign-t Binary: dialign-tx, dialign-tx-data Architecture: any all Version: 1.0.2-14 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: https://dialign-tx.gobics.de/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/dialign-t Vcs-Git: https://salsa.debian.org/med-team/dialign-t.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: dialign-tx deb science optional arch=any dialign-tx-data deb science optional arch=all Checksums-Sha1: 4d4e50070f019b88078105ec21f22b1005a010af 1765296 dialign-t_1.0.2.orig.tar.gz 3f1a11d841c8ba86d85bd953efe1a1ad47f8a4ec 18844 dialign-t_1.0.2-14.debian.tar.xz Checksums-Sha256: fb3940a48a12875332752a298f619f0da62593189cd257d28932463c7cebcb8f 1765296 dialign-t_1.0.2.orig.tar.gz 19a1ad3674302e923fad06e248d9df1c7be6e1a1a373a36377d2dd3f7fd78a09 18844 dialign-t_1.0.2-14.debian.tar.xz Files: 8ccfb1d91136157324d1e513f184ca29 1765296 dialign-t_1.0.2.orig.tar.gz 43043aac86651f602560f830725cb42d 18844 dialign-t_1.0.2-14.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmHFsWURHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFk5w/+LjmQOGgX8QWX5LbP1HvECjUIdixOWmH9 p3JEOsT3IiolbDVQls/zyF7/jqvtspDudaVYfxS0+ShAjY3PzJhN4/+F/m8wQkEO lYQnhOWNVEAFlcNpCtHP+sxKCmg72ZDq+Yz3EUdJhg380NPwtOtwyqn7TvBzZH7M rwCWy/zYjYJnaJqWKBsmCzpB413tS4jeTwiBySYILJ/mGtaQ4koDrtozm2hkMy1A 9vMjnuCwTVXTBzHz0Yv+KLhlgTuF+dtZhpzRuYFWYd1SZaRsn/l1u3G5yF5tbmZI jwYzkG/4GvOCKVoteMV8jyuIPbAJWypM/PbDQV7llFGjnMg6C20NJPW53QKzOaU8 OZMVHC2mhEOMVcc9eJB+8+2dou+yTgLzpiK+cs9E24MpioLn+QUDoMellJHu55tg gcxeiB4P2M/w4nQxblVwF4iiUKIzdxM0KYNsth1hgKzBgS4XUeGodNbwL7O2idW9 6UCw4T5cdOCLiOXZbh9Shp5WPOEHYpOGrzXeOFrARaVsmPLAFKCEHx26AZWYCpdf gkbbas5/hs+w9qrnqC3qzMP+Ajhi+fyd5OKGij0FgxaG0Rio+dCoqxfSHdGwA8kN rISrohRaG4XN61T+ML/z5dY95nJliuf4LbCrc/brQczNq3+at4Kud8XVJHckZ/qQ 451lAjMZyXA= =h8zV -----END PGP SIGNATURE----- Mon Apr 17 12:44:02 UTC 2023 I: Checking whether the package is not for us Mon Apr 17 12:44:02 UTC 2023 I: Starting 1st build on remote node ionos15-amd64.debian.net. Mon Apr 17 12:44:02 UTC 2023 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Mon Apr 17 12:44:56 UTC 2023 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun May 19 07:07:05 -12 2024 I: pbuilder-time-stamp: 1716145625 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dialign-t_1.0.2-14.dsc] I: copying [./dialign-t_1.0.2.orig.tar.gz] I: copying [./dialign-t_1.0.2-14.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Dec 23 23:39:17 2021 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./dialign-t_1.0.2-14.dsc: no acceptable signature found dpkg-source: info: extracting dialign-t in dialign-t-1.0.2 dpkg-source: info: unpacking dialign-t_1.0.2.orig.tar.gz dpkg-source: info: unpacking dialign-t_1.0.2-14.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying prevent_enforcing_arch.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying consistent_declarations.patch dpkg-source: info: applying clang-ftbfs.diff dpkg-source: info: applying spelling.patch dpkg-source: info: applying mayhem.patch dpkg-source: info: applying gcc10.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/190350/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='3a4a6e3b503b4b45a685618aab1d6a07' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='190350' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.g8sMyJAH/pbuilderrc_bouc --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.g8sMyJAH/b1 --logfile b1/build.log dialign-t_1.0.2-14.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 6.1.0-0.deb11.5-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.12-1~bpo11+1 (2023-03-05) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Feb 12 2023 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 2023 more -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Feb 12 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/190350/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 18.7 MB of archives. After unpacking 72.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b3 [687 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Fetched 18.7 MB in 0s (58.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../02-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_amd64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../22-libelf1_0.188-2.1_amd64.deb ... Unpacking libelf1:amd64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_amd64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../24-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.1+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.1+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-12_amd64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Setting up libpipeline1:amd64 (1.5.7-1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-12) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.1+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/dialign-t-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dialign-t_1.0.2-14_source.changes dpkg-buildpackage: info: source package dialign-t dpkg-buildpackage: info: source version 1.0.2-14 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --sourcedirectory=/build/dialign-t-1.0.2/source dh_auto_clean -O--sourcedirectory=/build/dialign-t-1.0.2/source cd source && make -j16 clean make[1]: Entering directory '/build/dialign-t-1.0.2/source' rm -rf *.o *rtl *jump *addre* *cfg *life *reg *reload *flow* *stack museq dialign-tx make[1]: Leaving directory '/build/dialign-t-1.0.2/source' dh_autoreconf_clean -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_clean -O--sourcedirectory=/build/dialign-t-1.0.2/source debian/rules binary dh binary --sourcedirectory=/build/dialign-t-1.0.2/source dh_update_autotools_config -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_autoreconf -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_auto_configure -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_auto_build -O--sourcedirectory=/build/dialign-t-1.0.2/source cd source && make -j16 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/dialign-t-1.0.2/source' gcc -g -O2 -ffile-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o museq.o museq.c gcc -g -O2 -ffile-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o parameters.o parameters.c gcc -g -O2 -ffile-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o io.o io.c gcc -g -O2 -ffile-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o diag.o diag.c gcc -g -O2 -ffile-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o alig.o alig.c gcc -g -O2 -ffile-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o assemble.o assemble.c gcc -g -O2 -ffile-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o prob.o prob.c gcc -g -O2 -ffile-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o orf.o orf.c gcc -g -O2 -ffile-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o translate.o translate.c diag.c:1456:17: warning: 'real_calc_weight' is static but used in inline function 'find_diags_dyn' which is not static 1456 | real_calc_weight(dg, smatrix, pdist,1,tmp_dist,algn); | ^~~~~~~~~~~~~~~~ museq.c: In function 'main': museq.c:168:9: warning: implicit declaration of function 'free_diag'; did you mean 'free_diag_col'? [-Wimplicit-function-declaration] 168 | free_diag(adcol.diags[i]); | ^~~~~~~~~ | free_diag_col museq.c:278:27: warning: implicit declaration of function 'free_alignment' [-Wimplicit-function-declaration] 278 | if(! para->FAST_MODE) free_alignment(algn); | ^~~~~~~~~~~~~~ io.c: In function 'read_anchors': io.c:535:23: warning: format '%li' expects argument of type 'long int *', but argument 3 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~ | | | | long int * int * | %i io.c:535:27: warning: format '%li' expects argument of type 'long int *', but argument 4 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~ | | | | long int * int * | %i io.c:535:31: warning: format '%li' expects argument of type 'long int *', but argument 5 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~~ | | | | long int * int * | %i io.c:535:35: warning: format '%li' expects argument of type 'long int *', but argument 6 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~~ | | | | long int * int * | %i io.c:535:39: warning: format '%li' expects argument of type 'long int *', but argument 7 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~~ | | | | long int * int * | %i io.c: In function 'read_scr_matrix': io.c:270:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 270 | fscanf( fp, "%i", &is); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:282:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 282 | fscanf(fp, "%s\n", rline); | ^~~~~~~~~~~~~~~~~~~~~~~~~ io.c: In function 'read_diag_prob_dist': io.c:371:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 371 | fscanf( fp, "%li %li %Le\n", &ti,&tscr,&weight ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alig.c:15:20: warning: inline function 'calc_ov_weight' declared but never defined 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix, | ^~~~~~~~~~~~~~ alig.c:13:20: warning: inline function 'calc_weight' declared but never defined 13 | extern inline void calc_weight(struct diag* dg, struct scr_matrix* smatrix, | ^~~~~~~~~~~ assemble.c:37:32: warning: inline function 'find_eqc' declared but never defined 37 | extern inline struct algn_pos *find_eqc(struct algn_pos **ap, int seqnum, int pos); | ^~~~~~~~ assemble.c:25:39: warning: inline function 'find_diags_guided' declared but never defined 25 | extern inline struct simple_diag_col* find_diags_guided(struct scr_matrix *smatrix, | ^~~~~~~~~~~~~~~~~ assemble.c:15:20: warning: inline function 'calc_ov_weight' declared but never defined 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix, | ^~~~~~~~~~~~~~ rm -f ./museq gcc -o ./museq \ ./museq.o ./parameters.o ./io.o ./diag.o ./alig.o ./assemble.o ./prob.o ./orf.o ./translate.o \ -pipe -Wall -lm -Wl,-z,relro -Wl,-z,now mv museq dialign-tx make[1]: Leaving directory '/build/dialign-t-1.0.2/source' dh_auto_test -O--sourcedirectory=/build/dialign-t-1.0.2/source create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_prep -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_auto_install -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_install -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_installdocs -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_installchangelogs -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_installman -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_installsystemduser -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_perl -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_link -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_strip_nondeterminism -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_compress -O--sourcedirectory=/build/dialign-t-1.0.2/source debian/rules override_dh_fixperms-indep make[1]: Entering directory '/build/dialign-t-1.0.2' dh_fixperms chmod 644 /build/dialign-t-1.0.2/debian/dialign-tx-data/usr/share/dialign-tx/* make[1]: Leaving directory '/build/dialign-t-1.0.2' dh_fixperms -O--sourcedirectory=/build/dialign-t-1.0.2/source -Ndialign-tx-data dh_missing -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_dwz -a -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_strip -a -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_makeshlibs -a -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_shlibdeps -a -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_installdeb -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_gencontrol -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_md5sums -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_builddeb -O--sourcedirectory=/build/dialign-t-1.0.2/source dpkg-deb: building package 'dialign-tx' in '../dialign-tx_1.0.2-14_amd64.deb'. dpkg-deb: building package 'dialign-tx-dbgsym' in '../dialign-tx-dbgsym_1.0.2-14_amd64.deb'. dpkg-deb: building package 'dialign-tx-data' in '../dialign-tx-data_1.0.2-14_all.deb'. dpkg-genbuildinfo --build=binary -O../dialign-t_1.0.2-14_amd64.buildinfo dpkg-genchanges --build=binary -O../dialign-t_1.0.2-14_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/190350 and its subdirectories I: Current time: Sun May 19 07:07:57 -12 2024 I: pbuilder-time-stamp: 1716145677 Mon Apr 17 12:44:57 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Mon Apr 17 12:44:57 UTC 2023 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Mon Apr 17 12:46:16 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Mon Apr 17 12:46:17 UTC 2023 I: dialign-t_1.0.2-14_amd64.changes: Format: 1.8 Date: Fri, 24 Dec 2021 12:31:48 +0100 Source: dialign-t Binary: dialign-tx dialign-tx-data dialign-tx-dbgsym Architecture: all amd64 Version: 1.0.2-14 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: dialign-tx - Segment-based multiple sequence alignment dialign-tx-data - Segment-based multiple sequence alignment (data files) Changes: dialign-t (1.0.2-14) unstable; urgency=medium . * d/watch: Use http instead of https * Standards-Version: 4.6.0 (routine-update) Checksums-Sha1: a276e3bd080993ef1b330aa19f5ffdf82bb5ea50 5431 dialign-t_1.0.2-14_amd64.buildinfo 2172165cb37a5bd66e4faab60408f4b47d0b7cdd 872684 dialign-tx-data_1.0.2-14_all.deb 44de5f0ebb15f6f4f1aa1caa62b662810ce2d9c8 158652 dialign-tx-dbgsym_1.0.2-14_amd64.deb 93ca3bbf826a0d7a6151b1af8b36942713b77d1b 84888 dialign-tx_1.0.2-14_amd64.deb Checksums-Sha256: 0f5a0589a1d07bd08be4471f026db0acf142d95a16979ca72db90c071b30d2bf 5431 dialign-t_1.0.2-14_amd64.buildinfo 20c6faddb3bf98a225fe5b396a52e9362a114c19e97e9d695e8898ff335f7dab 872684 dialign-tx-data_1.0.2-14_all.deb 4c11b6bb8b37a3884af5b2df5dec1ac92509fb1288d6cad76bd5e9a482473e2f 158652 dialign-tx-dbgsym_1.0.2-14_amd64.deb 081af1bd6805d9f85eb841d839bfc91d354f26660e4775ba1aaaa4d47899b085 84888 dialign-tx_1.0.2-14_amd64.deb Files: a982e8a969304df22f5a2092f33d3cc9 5431 science optional dialign-t_1.0.2-14_amd64.buildinfo d169649ad0ce1e99e032bfb7dbfccd8d 872684 science optional dialign-tx-data_1.0.2-14_all.deb 09b840128079db972095ce29efe3f510 158652 debug optional dialign-tx-dbgsym_1.0.2-14_amd64.deb fb70348e76baead2b21768c470642d70 84888 science optional dialign-tx_1.0.2-14_amd64.deb Mon Apr 17 12:46:18 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.g8sMyJAH/dialign-t_1.0.2-14.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.g8sMyJAH/dialign-t_1.0.2-14.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.g8sMyJAH/dialign-t_1.0.2-14.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.g8sMyJAH/b1/dialign-t_1.0.2-14_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.g8sMyJAH/b2/dialign-t_1.0.2-14_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.517s) 0.517s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.050s) 0.050s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Mon Apr 17 12:46:19 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Mon Apr 17 12:46:19 UTC 2023 I: dialign-t from bookworm built successfully and reproducibly on amd64. Mon Apr 17 12:46:20 UTC 2023 I: Submitting .buildinfo files to external archives: Mon Apr 17 12:46:20 UTC 2023 I: Submitting 8.0K b1/dialign-t_1.0.2-14_amd64.buildinfo.asc Mon Apr 17 12:46:22 UTC 2023 I: Submitting 8.0K b2/dialign-t_1.0.2-14_amd64.buildinfo.asc Mon Apr 17 12:46:24 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Apr 17 12:46:24 UTC 2023 I: Done submitting .buildinfo files. Mon Apr 17 12:46:24 UTC 2023 I: Removing signed dialign-t_1.0.2-14_amd64.buildinfo.asc files: removed './b1/dialign-t_1.0.2-14_amd64.buildinfo.asc' removed './b2/dialign-t_1.0.2-14_amd64.buildinfo.asc'