Fri Apr 14 17:31:32 UTC 2023 I: starting to build dextractor/bookworm/amd64 on jenkins on '2023-04-14 17:31' Fri Apr 14 17:31:32 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_12/31073/console.log Fri Apr 14 17:31:32 UTC 2023 I: Downloading source for bookworm/dextractor=1.0-6 --2023-04-14 17:31:32-- http://cdn-fastly.deb.debian.org/debian/pool/main/d/dextractor/dextractor_1.0-6.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1965 (1.9K) [text/prs.lines.tag] Saving to: ‘dextractor_1.0-6.dsc’ 0K . 100% 117M=0s 2023-04-14 17:31:32 (117 MB/s) - ‘dextractor_1.0-6.dsc’ saved [1965/1965] Fri Apr 14 17:31:32 UTC 2023 I: dextractor_1.0-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: dextractor Binary: dextractor Architecture: any Version: 1.0-6 Maintainer: Debian Med Packaging Team Uploaders: Shayan Doust Homepage: https://github.com/thegenemyers/DEXTRACTOR Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/dextractor Vcs-Git: https://salsa.debian.org/med-team/dextractor.git Build-Depends: debhelper-compat (= 13), libhdf5-dev Package-List: dextractor deb science optional arch=any Checksums-Sha1: 9c8c1efe7555d54a49b1937296b86d5c890ad2b9 37833 dextractor_1.0.orig.tar.gz b028612c202979f9650a0eeb5e651be7a2114b47 5524 dextractor_1.0-6.debian.tar.xz Checksums-Sha256: 5f45ab8944f857fc30b7a0e762fbdc63d9b61f3303412deee29d7580c53272bc 37833 dextractor_1.0.orig.tar.gz 403c7548a456fb5c4f5f5b54194fff04665437a8eaf9437b802073eba2238221 5524 dextractor_1.0-6.debian.tar.xz Files: 23c33f1871b792f35359323325614c94 37833 dextractor_1.0.orig.tar.gz 701aef56dc4809d154863f3cad2e51bb 5524 dextractor_1.0-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmNjtmcRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHkZg//UjxwTQlhyGZW6X1QAXMZ/NO96LIoZbM8 DewqzqY19QFQUtSKO0IMZthC4RGgWFGCkiynX6THFK7bAsSe0dBxWeZ4LDT9Vkei Rii44s3AogrfN9+EwR69fMARXky/+ertElnREI3HrIOq0+DO9attw81Sg2pQvGsh D8Mp6N5/NIQpije+r8XASsuUOlbR9M2Vd/8byF2WQUjQv+123D9E2725rqGxrZxz s31IVsfWBX6wktRMZon6g7vzy/YWgs9PKptqrs7x3OrIhWYj+1bUAXfH7xVrnXIp a/TQI43t1OQNa0pagFiKWuGs4r+nTUf8bZ+MO02h13x8Xem5hbf+r1+vKsbgX/4U 28INk58rcZjF/WPqDtLaGcWLpMV9uPKa2r6W5qMZ2Qkz03sbMrRfm4unknRF9RKb DVtPIdn4rMCKKtx3CaQyQRUaeb9reTQplPZKvheoT0R4osxMMMq5KBeyYTUpAXmv qXVhILgkTq8Xb5/Y1Cm+8ZsjtkDE0DWPZ0hu+CdspvRw/BybePwI4/hczdQ+glcY ubLWezPnkZp8KKtRnaaFEOAtzly6WHqLZ2ol4bZBFefe+giKJDVAUR1cw8j9qsMm gR6JwaFB8lAucSLH7cycCLFDHDfOo3bMh8W56i/OQTg0uGOjBtO59oz6uxIk6EZd nOmWW1iPBPQ= =MwFK -----END PGP SIGNATURE----- Fri Apr 14 17:31:32 UTC 2023 I: Checking whether the package is not for us Fri Apr 14 17:31:32 UTC 2023 I: Starting 1st build on remote node ionos15-amd64.debian.net. Fri Apr 14 17:31:32 UTC 2023 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Fri Apr 14 17:33:36 UTC 2023 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu May 16 11:54:34 -12 2024 I: pbuilder-time-stamp: 1715903674 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dextractor_1.0-6.dsc] I: copying [./dextractor_1.0.orig.tar.gz] I: copying [./dextractor_1.0-6.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Nov 3 00:39:03 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./dextractor_1.0-6.dsc: no acceptable signature found dpkg-source: info: extracting dextractor in dextractor-1.0 dpkg-source: info: unpacking dextractor_1.0.orig.tar.gz dpkg-source: info: unpacking dextractor_1.0-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_system_packaged_libhdf5-dev.patch dpkg-source: info: applying cross.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/39236/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f06b047ce1ee47819a3acf736e5da367' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='39236' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.q7G17YMz/pbuilderrc_s586 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.q7G17YMz/b1 --logfile b1/build.log dextractor_1.0-6.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 6.1.0-0.deb11.5-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.12-1~bpo11+1 (2023-03-05) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Feb 12 08:05 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Feb 12 08:05 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 04:31 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar -rwxr-xr-x 1 root root 14520 Nov 2 04:31 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/39236/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libhdf5-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libbrotli1{a} libcurl4{a} libcurl4-openssl-dev{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libicu72{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libssl-dev{a} libsub-override-perl{a} libsz2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 57 newly installed, 0 to remove and 0 not upgraded. Need to get 29.5 MB of archives. After unpacking 115 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b3 [687 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 hdf5-helpers amd64 1.10.8+repack1-1 [27.9 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libaec0 amd64 1.0.6-1+b1 [21.1 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libsz2 amd64 1.0.6-1+b1 [7804 B] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libaec-dev amd64 1.0.6-1+b1 [19.9 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-8 [386 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 libcurl4-openssl-dev amd64 7.88.1-8 [486 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libhdf5-103-1 amd64 1.10.8+repack1-1 [1237 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libhdf5-cpp-103-1 amd64 1.10.8+repack1-1 [128 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libhdf5-fortran-102 amd64 1.10.8+repack1-1 [93.3 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 libhdf5-hl-100 amd64 1.10.8+repack1-1 [67.8 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 libhdf5-hl-fortran-100 amd64 1.10.8+repack1-1 [44.5 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libhdf5-hl-cpp-100 amd64 1.10.8+repack1-1 [25.5 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-2 [290 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libjpeg-dev amd64 1:2.1.5-2 [71.8 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libssl-dev amd64 3.0.8-1 [2427 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libhdf5-dev amd64 1.10.8+repack1-1 [2615 kB] Fetched 29.5 MB in 1s (44.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../02-libmagic1_1%3a5.44-3_amd64.deb ... 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Setting up libjpeg62-turbo:amd64 (1:2.1.5-2) ... Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libssl-dev:amd64 (3.0.8-1) ... Setting up autopoint (0.21-12) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.1+b3) ... Setting up libsz2:amd64 (1.0.6-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libaec-dev:amd64 (1.0.6-1+b1) ... Setting up libjpeg-dev:amd64 (1:2.1.5-2) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libcurl4:amd64 (7.88.1-8) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcurl4-openssl-dev:amd64 (7.88.1-8) ... Setting up libhdf5-103-1:amd64 (1.10.8+repack1-1) ... Setting up libhdf5-cpp-103-1:amd64 (1.10.8+repack1-1) ... Setting up libhdf5-hl-100:amd64 (1.10.8+repack1-1) ... Setting up debhelper (13.11.4) ... Setting up libhdf5-hl-cpp-100:amd64 (1.10.8+repack1-1) ... Setting up libhdf5-fortran-102:amd64 (1.10.8+repack1-1) ... Setting up libhdf5-hl-fortran-100:amd64 (1.10.8+repack1-1) ... Setting up libhdf5-dev (1.10.8+repack1-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Processing triggers for libc-bin (2.36-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/dextractor-1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dextractor_1.0-6_source.changes dpkg-buildpackage: info: source package dextractor dpkg-buildpackage: info: source version 1.0-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/dextractor-1.0' dh_auto_clean make -j16 clean make[2]: Entering directory '/build/dextractor-1.0' rm -f dextract dexta undexta dexqv undexqv dextract.tar.gz rm -fr *.dSYM rm -f dextract.tar.gz make[2]: Leaving directory '/build/dextractor-1.0' rm -rf bin make[1]: Leaving directory '/build/dextractor-1.0' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/dextractor-1.0' dh_auto_build -- ARGS="-I/usr/include/hdf5/serial -L/usr/lib/x86_64-linux-gnu/hdf5/serial" make -j16 "INSTALL=install --strip-program=true" "ARGS=-I/usr/include/hdf5/serial -L/usr/lib/x86_64-linux-gnu/hdf5/serial" make[2]: Entering directory '/build/dextractor-1.0' #gcc -g -O3 -Wall -Wextra -fno-strict-aliasing -I/usr/include/hdf5/serial/ -L/usr/lib/x86_64-linux-gnu/hdf5/serial/ -o dextract dextract.c DB.c QV.c -lhdf5 cc -g -O3 -Wall -Wextra -fno-strict-aliasing -I/usr/include/hdf5/serial -L/usr/lib/x86_64-linux-gnu/hdf5/serial -o dextract dextract.c DB.c QV.c -lhdf5 cc -g -O3 -Wall -Wextra -fno-strict-aliasing -o dexta dexta.c DB.c QV.c cc -g -O3 -Wall -Wextra -fno-strict-aliasing -o undexta undexta.c DB.c QV.c cc -g -O3 -Wall -Wextra -fno-strict-aliasing -o dexqv dexqv.c DB.c QV.c cc -g -O3 -Wall -Wextra -fno-strict-aliasing -o undexqv undexqv.c DB.c QV.c In function ‘writeBaxReads’, inlined from ‘main’ at dextract.c:603:13: dextract.c:399:30: warning: ‘b.delLimit’ may be used uninitialized [-Wmaybe-uninitialized] 399 | { if (delQV[a] == d) | ^ dextract.c: In function ‘main’: dextract.c:488:11: note: ‘b.delLimit’ was declared here 488 | BaxData b; | ^ DB.c: In function ‘Open_DB’: DB.c:530:11: warning: ‘free’ called on pointer ‘p’ with nonzero offset 40 [-Wfree-nonheap-object] 530 | free(reads); | ^~~~~~~~~~~ In function ‘Malloc’, inlined from ‘Open_DB’ at DB.c:524:30: DB.c:85:12: note: returned from ‘malloc’ 85 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function ‘Open_DB’: DB.c:530:11: warning: ‘free’ called on pointer ‘p’ with nonzero offset 40 [-Wfree-nonheap-object] 530 | free(reads); | ^~~~~~~~~~~ In function ‘Malloc’, inlined from ‘Open_DB’ at DB.c:524:30: DB.c:85:12: note: returned from ‘malloc’ 85 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function ‘Open_DB’: DB.c:530:11: warning: ‘free’ called on pointer ‘p’ with nonzero offset 40 [-Wfree-nonheap-object] 530 | free(reads); | ^~~~~~~~~~~ In function ‘Malloc’, inlined from ‘Open_DB’ at DB.c:524:30: DB.c:85:12: note: returned from ‘malloc’ 85 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function ‘Open_DB’: DB.c:530:11: warning: ‘free’ called on pointer ‘p’ with nonzero offset 40 [-Wfree-nonheap-object] 530 | free(reads); | ^~~~~~~~~~~ In function ‘Malloc’, inlined from ‘Open_DB’ at DB.c:524:30: DB.c:85:12: note: returned from ‘malloc’ 85 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function ‘Open_DB’: DB.c:530:11: warning: ‘free’ called on pointer ‘p’ with nonzero offset 40 [-Wfree-nonheap-object] 530 | free(reads); | ^~~~~~~~~~~ In function ‘Malloc’, inlined from ‘Open_DB’ at DB.c:524:30: DB.c:85:12: note: returned from ‘malloc’ 85 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function ‘Read_All_Sequences’: DB.c:1455:15: warning: ‘free’ called on pointer ‘p’ with nonzero offset 1 [-Wfree-nonheap-object] 1455 | free(seq); | ^~~~~~~~~ In function ‘Malloc’, inlined from ‘Read_All_Sequences’ at DB.c:1432:18: DB.c:85:12: note: returned from ‘malloc’ 85 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function ‘Read_All_Sequences’: DB.c:1455:15: warning: ‘free’ called on pointer ‘p’ with nonzero offset 1 [-Wfree-nonheap-object] 1455 | free(seq); | ^~~~~~~~~ In function ‘Malloc’, inlined from ‘Read_All_Sequences’ at DB.c:1432:18: DB.c:85:12: note: returned from ‘malloc’ 85 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function ‘Read_All_Sequences’: DB.c:1455:15: warning: ‘free’ called on pointer ‘p’ with nonzero offset 1 [-Wfree-nonheap-object] 1455 | free(seq); | ^~~~~~~~~ In function ‘Malloc’, inlined from ‘Read_All_Sequences’ at DB.c:1432:18: DB.c:85:12: note: returned from ‘malloc’ 85 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function ‘Read_All_Sequences’: DB.c:1455:15: warning: ‘free’ called on pointer ‘p’ with nonzero offset 1 [-Wfree-nonheap-object] 1455 | free(seq); | ^~~~~~~~~ In function ‘Malloc’, inlined from ‘Read_All_Sequences’ at DB.c:1432:18: DB.c:85:12: note: returned from ‘malloc’ 85 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function ‘Read_All_Sequences’: DB.c:1455:15: warning: ‘free’ called on pointer ‘p’ with nonzero offset 1 [-Wfree-nonheap-object] 1455 | free(seq); | ^~~~~~~~~ In function ‘Malloc’, inlined from ‘Read_All_Sequences’ at DB.c:1432:18: DB.c:85:12: note: returned from ‘malloc’ 85 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ make[2]: Leaving directory '/build/dextractor-1.0' make[1]: Leaving directory '/build/dextractor-1.0' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/dextractor/ make -j16 install DESTDIR=/build/dextractor-1.0/debian/dextractor AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/dextractor-1.0' mkdir bin/ cp dextract dexta undexta dexqv undexqv bin/ make[1]: Leaving directory '/build/dextractor-1.0' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dextractor' in '../dextractor_1.0-6_amd64.deb'. dpkg-deb: building package 'dextractor-dbgsym' in '../dextractor-dbgsym_1.0-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../dextractor_1.0-6_amd64.buildinfo dpkg-genchanges --build=binary -O../dextractor_1.0-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/39236 and its subdirectories I: Current time: Thu May 16 11:56:35 -12 2024 I: pbuilder-time-stamp: 1715903796 Fri Apr 14 17:33:36 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Fri Apr 14 17:33:36 UTC 2023 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Fri Apr 14 17:42:44 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Fri Apr 14 17:42:44 UTC 2023 I: dextractor_1.0-6_amd64.changes: Format: 1.8 Date: Thu, 03 Nov 2022 12:49:08 +0100 Source: dextractor Binary: dextractor dextractor-dbgsym Architecture: amd64 Version: 1.0-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: dextractor - (d)extractor and compression command library Changes: dextractor (1.0-6) unstable; urgency=medium . * Team upload. * Fix watch file * Standards-Version: 4.6.1 (routine-update) * Set upstream metadata fields: Repository-Browse. Checksums-Sha1: d79e79ba4a67d9996d664b4bc4906b0745ca4a05 254564 dextractor-dbgsym_1.0-6_amd64.deb 4b6030a829933cfa010c9ca5fa6e46cc8888ff25 6206 dextractor_1.0-6_amd64.buildinfo fea58179371c3c820f6e92f62e0cb3196f4e6cb6 49856 dextractor_1.0-6_amd64.deb Checksums-Sha256: 74728f0239f57f7b38fd25c36bcfc88e33063ecb360f67eac5a7a76844238835 254564 dextractor-dbgsym_1.0-6_amd64.deb 388dcedf3244ca398103018d58bf15ce7dee8f58341e216322096aa61b870112 6206 dextractor_1.0-6_amd64.buildinfo ae6e3a0cbb4872effa772865bdf5992f6b959ba91dc01e1d37455a4ae4738312 49856 dextractor_1.0-6_amd64.deb Files: b36ba1577388367fee5f503f42d0721e 254564 debug optional dextractor-dbgsym_1.0-6_amd64.deb 0174e6ae69c2b67ad1bbaeb714a1b748 6206 science optional dextractor_1.0-6_amd64.buildinfo 0d17d8befdde2cadcc3b0ff129fdbcdb 49856 science optional dextractor_1.0-6_amd64.deb Fri Apr 14 17:42:45 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.q7G17YMz/dextractor_1.0-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.q7G17YMz/dextractor_1.0-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.q7G17YMz/dextractor_1.0-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.q7G17YMz/b1/dextractor_1.0-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.q7G17YMz/b2/dextractor_1.0-6_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.362s) 0.362s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.029s) 0.029s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Fri Apr 14 17:44:11 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Fri Apr 14 17:44:11 UTC 2023 I: dextractor from bookworm built successfully and reproducibly on amd64. Fri Apr 14 17:44:14 UTC 2023 I: Submitting .buildinfo files to external archives: Fri Apr 14 17:44:14 UTC 2023 I: Submitting 8.0K b1/dextractor_1.0-6_amd64.buildinfo.asc Fri Apr 14 17:44:15 UTC 2023 I: Submitting 8.0K b2/dextractor_1.0-6_amd64.buildinfo.asc Fri Apr 14 17:44:19 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Apr 14 17:44:19 UTC 2023 I: Done submitting .buildinfo files. Fri Apr 14 17:44:19 UTC 2023 I: Removing signed dextractor_1.0-6_amd64.buildinfo.asc files: removed './b1/dextractor_1.0-6_amd64.buildinfo.asc' removed './b2/dextractor_1.0-6_amd64.buildinfo.asc'