Sun Jun 11 14:58:00 UTC 2023 I: starting to build apophenia/bookworm/amd64 on jenkins on '2023-06-11 14:57' Sun Jun 11 14:58:00 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_23/584/console.log Sun Jun 11 14:58:00 UTC 2023 I: Downloading source for bookworm/apophenia=1.0+ds-8 --2023-06-11 14:58:00-- http://cdn-fastly.deb.debian.org/debian/pool/main/a/apophenia/apophenia_1.0%2bds-8.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 3115 (3.0K) [text/prs.lines.tag] Saving to: ‘apophenia_1.0+ds-8.dsc’ 0K ... 100% 179M=0s 2023-06-11 14:58:01 (179 MB/s) - ‘apophenia_1.0+ds-8.dsc’ saved [3115/3115] Sun Jun 11 14:58:01 UTC 2023 I: apophenia_1.0+ds-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: apophenia Binary: libapophenia2, libapophenia2-dev, apophenia-bin, apophenia-doc Architecture: any all Version: 1.0+ds-8 Maintainer: Debian Science Maintainers Uploaders: Jerome Benoit Homepage: http://apophenia.info/ Standards-Version: 4.4.0 Vcs-Browser: https://salsa.debian.org/science-team/apophenia Vcs-Git: https://salsa.debian.org/science-team/apophenia.git Build-Depends: debhelper-compat (= 12), autoconf-archive, gnulib, libtool, pkg-config, help2man, zlib1g-dev, default-libmysqlclient-dev, libsqlite3-dev, libgsl-dev, bc, sqlite3 Build-Depends-Indep: graphviz, doxygen, texlive-latex-recommended, texlive-fonts-recommended, ghostscript, rdfind, symlinks Package-List: apophenia-bin deb math optional arch=any apophenia-doc deb doc optional arch=all libapophenia2 deb libs optional arch=any libapophenia2-dev deb libdevel optional arch=any Checksums-Sha1: d18768809148efdda9e4bde563e9beeac697570d 526500 apophenia_1.0+ds.orig.tar.gz 4545973e53b0df91963422f0fd2f4c7f235bd611 13220 apophenia_1.0+ds-8.debian.tar.xz Checksums-Sha256: 27b8f22c92be8a2ae33af2e7bdad3342bc880c25f0ebd6531c0e585549dd27a1 526500 apophenia_1.0+ds.orig.tar.gz ba30dccb1c3b628467814c0f0b08ad9033548c0b337a82e4b33b30d23fea51b1 13220 apophenia_1.0+ds-8.debian.tar.xz Files: 2e04be48d6567a4c309cb3b56d0b4540 526500 apophenia_1.0+ds.orig.tar.gz 00ff709e3c131e52fb61708c73e2aa5e 13220 apophenia_1.0+ds-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQRJBAEBCgAzFiEEriiuFXEN/x2H5adiP5IZpn82xosFAl1WytoVHGNhbGN1bHVz QHJlem96ZXIubmV0AAoJED+SGaZ/NsaLmLkf/0BKTU5axN0mq3BkECl5cS0WNXy7 8WL3duJZLJmfBSjqoBEfmG1wDHBz1g/lsiws6WVYf3ax5ZyKFozIX2VRlkO6OZIO xJeWPG5jXCxCw3nkB/7HuM9vKTrxyLrV113/wTjuu8wTBglomFeTk92gqTvBtzcE 5PP3KGC3Z7Kn9sz1uf5TSh4bF/10lZF5cFAOlwAb6drz7U2s4kYUeX6pcnQ9naN1 aRng4W+a0WHv6L3viwkHOpJWi6sMSZ3NYqCdeWLkcojpgOVkLWgF+0760qholTqP BB17yaJZj1ne9GRjFAS+fz86M8iWmatNAs3KAIgOpqGBMDbMnvJf8oObk+HYnrYb 4zY2c6SAMsPv2ZMnBXPaVzMDDrp5uMBpAtyPr+or6vdth9x0ur+Tr3C2BRyTOTWc kaVgam2+VG97SJx3Si3HcNmNa+yCaN/bDaVAG6giz3gQ5WiSNTy02uiOTzZm4hRy I6GVFwFVlpFaYkrLmnQBT7W6ZVDZjj6HcRZDUIBLcvxo6XIX5h14BR8IOlExkfFC 8F/qrTy9m/iJ25a2GVxIa4CASl0SMxkd/PrBP1zTaJBr0DFB1T59YaH6MQIRHJ3C QZTJAwVJblyYmXp9LfnF46aCJropHskU+VYi53pZ5YgkNO6FTWvAVvtFQJHBuQR1 dSLT+02HZHHRjNUKaXBLWdh4RjsLYicFNzMjxodubyRh1lK+vmkcIugs+NSdSxyK YF9CE1kdOXFl7auCGwIe/MfYwU8AksOTOM7c2YtZZXRJls2qo0zvEfXytCjFOKfe Q1PpIPxySpxZ7J5XMCOM5NKCeM5TBAcve4t3JDl5Yz+xLYSoeOMPQT7Wumlu2J/h rbbJsv049JMoo2wS+Hu1fkEcoe50FlQQDSVh2e4l5p86pu+1W0LeWQv66/Q+bauS /CA8jk7eAzM3XEdlH7TTmKmr3YyEmI6PiBdfRdMconWYY9fGhQBz5Pwjl2Gx85KX dZL0qQOjWx9uPdNIqqulFzbfiYVMDzrZazLIIe0F4Pu2hkkGi00j1IsgHwbykSMg qFDI5b5PUvNY6Oqcqd2BHIW+pJWUA43bJAgGXz6YDTQ0drkB5Fm6zUIKaKK7Rfkt Prk08vIXARVjULpXYDGvE3xcgr7k+Nf/H36zJwzxjOjTdVagfYxtVBBwzH6rTsUc pTcBtAIlu9Ti2CRYClUXJpgxKyz+C7kCLfHYJa3y1k8so0NdIypvFN/MQ7blG6Sf y6Sx0qwRm2Ge6zRhYojhDdtlGzM2Jd95lxnkixtbw41M8kB35GzLCLjf2hgNP2Jk nbZD82jbopcaEdFq+SSNmSmmquA6/zVe9rUb093XDi7XwA0OSx81WmnqOHg= =TYL2 -----END PGP SIGNATURE----- Sun Jun 11 14:58:01 UTC 2023 I: Checking whether the package is not for us Sun Jun 11 14:58:01 UTC 2023 I: Starting 1st build on remote node ionos11-amd64.debian.net. Sun Jun 11 14:58:01 UTC 2023 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Sun Jun 11 16:57:34 UTC 2023 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jun 11 02:58:03 -12 2023 I: pbuilder-time-stamp: 1686495483 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [apophenia_1.0+ds-8.dsc] I: copying [./apophenia_1.0+ds.orig.tar.gz] I: copying [./apophenia_1.0+ds-8.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Aug 16 03:25:14 2019 -12 gpgv: using RSA key AE28AE15710DFF1D87E5A7623F9219A67F36C68B gpgv: issuer "calculus@rezozer.net" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./apophenia_1.0+ds-8.dsc: no acceptable signature found dpkg-source: info: extracting apophenia in apophenia-1.0+ds dpkg-source: info: unpacking apophenia_1.0+ds.orig.tar.gz dpkg-source: info: unpacking apophenia_1.0+ds-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying upstream-fix-implicit-model-ols_log_likelihood.patch dpkg-source: info: applying upstream-mysql-8.0.patch dpkg-source: info: applying upstream-bug-793998-tests_distribution_tests-2.patch dpkg-source: info: applying upstream-fix-typo.patch dpkg-source: info: applying upstream-enhancement-eg_test_updating.patch dpkg-source: info: applying upstream-correction-spelling-error-in-source.patch dpkg-source: info: applying debianization.patch dpkg-source: info: applying debianization-help2man.patch dpkg-source: info: applying debianization-documentation.patch dpkg-source: info: applying debianization-bug-597187_757967_841636-mysql_config.patch dpkg-source: info: applying debianization-adhoc.patch dpkg-source: info: applying debianization-bug-gcc9-XXX.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2228713/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='de5785870a524948aa18a55f93b86f85' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2228713' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Y5ytnUHg/pbuilderrc_p0PK --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Y5ytnUHg/b1 --logfile b1/build.log apophenia_1.0+ds-8.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 5.10.0-23-amd64 #1 SMP Debian 5.10.179-1 (2023-05-12) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/2228713/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), autoconf-archive, gnulib, libtool, pkg-config, help2man, zlib1g-dev, default-libmysqlclient-dev, libsqlite3-dev, libgsl-dev, bc, sqlite3, graphviz, doxygen, texlive-latex-recommended, texlive-fonts-recommended, ghostscript, rdfind, symlinks dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19591 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on autoconf-archive; however: Package autoconf-archive is not installed. pbuilder-satisfydepends-dummy depends on gnulib; however: Package gnulib is not installed. pbuilder-satisfydepends-dummy depends on libtool; however: Package libtool is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on default-libmysqlclient-dev; however: Package default-libmysqlclient-dev is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however: Package libsqlite3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on bc; however: Package bc is not installed. pbuilder-satisfydepends-dummy depends on sqlite3; however: Package sqlite3 is not installed. pbuilder-satisfydepends-dummy depends on graphviz; however: Package graphviz is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on rdfind; however: Package rdfind is not installed. pbuilder-satisfydepends-dummy depends on symlinks; however: Package symlinks is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} autoconf-archive{a} automake{a} autopoint{a} autotools-dev{a} bc{a} bsdextrautils{a} debhelper{a} default-libmysqlclient-dev{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} gnulib{a} graphviz{a} groff-base{a} help2man{a} intltool-debian{a} libabsl20220623{a} libann0{a} libaom3{a} libarchive-zip-perl{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libavif15{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcdt5{a} libcgraph6{a} libclang-cpp14{a} libclang1-14{a} libcups2{a} libdatrie1{a} libdav1d6{a} libdbus-1-3{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libglib2.0-0{a} libgraphite2-3{a} libgs-common{a} libgs10{a} libgs10-common{a} libgsl-dev{a} libgsl27{a} libgslcblas0{a} libgts-0.7-5{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libheif1{a} libice6{a} libicu72{a} libidn12{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libkpathsea6{a} liblab-gamut1{a} liblcms2-2{a} liblerc4{a} libllvm14{a} liblocale-gettext-perl{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmariadb-dev{a} libmariadb-dev-compat{a} libmariadb3{a} libnuma1{a} libopenjp2-7{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpathplan4{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng16-16{a} libptexenc1{a} librav1e0{a} libreadline8{a} libsm6{a} libsqlite3-dev{a} libssl-dev{a} libsub-override-perl{a} libsvtav1enc1{a} libsynctex2{a} libteckit0{a} libtexlua53-5{a} libtexluajit2{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx265-199{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6{a} libyuv0{a} libz3-4{a} libzzip-0-13{a} m4{a} man-db{a} mariadb-common{a} mysql-common{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} poppler-data{a} rdfind{a} readline-common{a} sensible-utils{a} sqlite3{a} symlinks{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-recommended{a} ucf{a} x11-common{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bison curl dbus dvisvgm fonts-droid-fallback fonts-liberation2 gperf libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libgts-bin libltdl-dev libmail-sendmail-perl libnet-dbus-perl libx11-protocol-perl lmodern lynx shared-mime-info tex-gyre texinfo tipa wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 167 newly installed, 0 to remove and 0 not upgraded. Need to get 178 MB of archives. After unpacking 706 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 autoconf-archive all 20220903-3 [775 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 liblocale-gettext-perl amd64 1.07-5 [15.4 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 poppler-data all 0.4.12-1 [1601 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 bc amd64 1.07.1-3+b1 [110 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 mysql-common all 5.8+1.1.0 [6636 B] Get: 39 http://deb.debian.org/debian bookworm/main amd64 mariadb-common all 1:10.11.3-1 [24.0 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libmariadb3 amd64 1:10.11.3-1 [172 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libssl-dev amd64 3.0.9-1 [2428 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libmariadb-dev amd64 1:10.11.3-1 [264 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 libmariadb-dev-compat amd64 1:10.11.3-1 [22.8 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 default-libmysqlclient-dev amd64 1.1.0 [3092 B] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libz3-4 amd64 4.8.12-3.1 [7216 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 libllvm14 amd64 1:14.0.6-12 [21.8 MB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 libclang-cpp14 amd64 1:14.0.6-12 [11.1 MB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libclang1-14 amd64 1:14.0.6-12 [6157 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 doxygen amd64 1.9.4-4 [4611 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5 [399 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libfontenc1 amd64 1:1.1.4-1 [24.3 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 fonts-urw-base35 all 20200910-7 [10.8 MB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 fontconfig amd64 2.14.1-4 [449 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 fonts-lmodern all 2.005-1 [4540 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 libgs-common all 10.0.0~dfsg-11 [148 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 libgs10-common all 10.0.0~dfsg-11 [586 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 libavahi-common-data amd64 0.8-10 [107 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 libavahi-common3 amd64 0.8-10 [41.6 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 libdbus-1-3 amd64 1.14.6-1 [200 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 libavahi-client3 amd64 0.8-10 [45.5 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 libcups2 amd64 2.4.2-3 [244 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 libidn12 amd64 1.41-1 [83.8 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 libijs-0.35 amd64 0.35-15 [16.4 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libjbig2dec0 amd64 0.19-3 [67.2 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-2 [189 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 libpaper1 amd64 1.1.29 [12.5 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.2 [285 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-6 [316 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 88 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 89 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2 [292 kB] Get: 90 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2 [759 kB] Get: 91 http://deb.debian.org/debian bookworm/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 libxt6 amd64 1:1.2.1-1.1 [186 kB] Get: 94 http://deb.debian.org/debian bookworm/main amd64 libgs10 amd64 10.0.0~dfsg-11 [2465 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 ghostscript amd64 10.0.0~dfsg-11 [56.6 kB] Get: 96 http://deb.debian.org/debian bookworm/main amd64 gnulib all 20230209+stable-1 [6060 kB] Get: 97 http://deb.debian.org/debian bookworm/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB] Get: 98 http://deb.debian.org/debian bookworm/main amd64 libcdt5 amd64 2.42.2-7+b3 [39.8 kB] Get: 99 http://deb.debian.org/debian bookworm/main amd64 libcgraph6 amd64 2.42.2-7+b3 [63.2 kB] Get: 100 http://deb.debian.org/debian bookworm/main amd64 libaom3 amd64 3.6.0-1 [1851 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 libdav1d6 amd64 1.0.0-2 [495 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 libabsl20220623 amd64 20220623.1-1 [391 kB] Get: 103 http://deb.debian.org/debian bookworm/main amd64 libgav1-1 amd64 0.18.0-1+b1 [332 kB] Get: 104 http://deb.debian.org/debian bookworm/main amd64 librav1e0 amd64 0.5.1-6 [763 kB] Get: 105 http://deb.debian.org/debian bookworm/main amd64 libsvtav1enc1 amd64 1.4.1+dfsg-1 [2121 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 libyuv0 amd64 0.0~git20230123.b2528b0-1 [168 kB] Get: 107 http://deb.debian.org/debian bookworm/main amd64 libavif15 amd64 0.11.1-1 [93.8 kB] Get: 108 http://deb.debian.org/debian bookworm/main amd64 libde265-0 amd64 1.0.11-1 [185 kB] Get: 109 http://deb.debian.org/debian bookworm/main amd64 libnuma1 amd64 2.0.16-1 [21.0 kB] Get: 110 http://deb.debian.org/debian bookworm/main amd64 libx265-199 amd64 3.5-2+b1 [1150 kB] Get: 111 http://deb.debian.org/debian bookworm/main amd64 libheif1 amd64 1.15.1-1 [215 kB] Get: 112 http://deb.debian.org/debian bookworm/main amd64 libxpm4 amd64 1:3.5.12-1.1 [48.4 kB] Get: 113 http://deb.debian.org/debian bookworm/main amd64 libgd3 amd64 2.3.3-9 [124 kB] Get: 114 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB] Get: 115 http://deb.debian.org/debian bookworm/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-5+b1 [160 kB] Get: 116 http://deb.debian.org/debian bookworm/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB] Get: 117 http://deb.debian.org/debian bookworm/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get: 118 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get: 119 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 120 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get: 121 http://deb.debian.org/debian bookworm/main amd64 libcairo2 amd64 1.16.0-7 [575 kB] Get: 122 http://deb.debian.org/debian bookworm/main amd64 libltdl7 amd64 2.4.7-5 [393 kB] Get: 123 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get: 124 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get: 125 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get: 126 http://deb.debian.org/debian bookworm/main amd64 libthai-data all 0.1.29-1 [176 kB] Get: 127 http://deb.debian.org/debian bookworm/main amd64 libdatrie1 amd64 0.2.13-2+b1 [43.3 kB] Get: 128 http://deb.debian.org/debian bookworm/main amd64 libthai0 amd64 0.1.29-1 [57.5 kB] Get: 129 http://deb.debian.org/debian bookworm/main amd64 libpango-1.0-0 amd64 1.50.12+ds-1 [212 kB] Get: 130 http://deb.debian.org/debian bookworm/main amd64 libpangoft2-1.0-0 amd64 1.50.12+ds-1 [47.4 kB] Get: 131 http://deb.debian.org/debian bookworm/main amd64 libpangocairo-1.0-0 amd64 1.50.12+ds-1 [34.2 kB] Get: 132 http://deb.debian.org/debian bookworm/main amd64 libpathplan4 amd64 2.42.2-7+b3 [42.2 kB] Get: 133 http://deb.debian.org/debian bookworm/main amd64 libgvc6 amd64 2.42.2-7+b3 [678 kB] Get: 134 http://deb.debian.org/debian bookworm/main amd64 libgvpr2 amd64 2.42.2-7+b3 [189 kB] Get: 135 http://deb.debian.org/debian bookworm/main amd64 liblab-gamut1 amd64 2.42.2-7+b3 [198 kB] Get: 136 http://deb.debian.org/debian bookworm/main amd64 libxmu6 amd64 2:1.1.3-3 [60.1 kB] Get: 137 http://deb.debian.org/debian bookworm/main amd64 libxaw7 amd64 2:1.0.14-1 [201 kB] Get: 138 http://deb.debian.org/debian bookworm/main amd64 graphviz amd64 2.42.2-7+b3 [611 kB] Get: 139 http://deb.debian.org/debian bookworm/main amd64 help2man amd64 1.49.3 [198 kB] Get: 140 http://deb.debian.org/debian bookworm/main amd64 libgslcblas0 amd64 2.7.1+dfsg-5 [108 kB] Get: 141 http://deb.debian.org/debian bookworm/main amd64 libgsl27 amd64 2.7.1+dfsg-5 [941 kB] Get: 142 http://deb.debian.org/debian bookworm/main amd64 libgsl-dev amd64 2.7.1+dfsg-5 [1152 kB] Get: 143 http://deb.debian.org/debian bookworm/main amd64 libkpathsea6 amd64 2022.20220321.62855-5.1 [152 kB] Get: 144 http://deb.debian.org/debian bookworm/main amd64 libpaper-utils amd64 1.1.29 [8868 B] Get: 145 http://deb.debian.org/debian bookworm/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB] Get: 146 http://deb.debian.org/debian bookworm/main amd64 libptexenc1 amd64 2022.20220321.62855-5.1 [43.6 kB] Get: 147 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-dev amd64 3.40.1-2 [1025 kB] Get: 148 http://deb.debian.org/debian bookworm/main amd64 libsynctex2 amd64 2022.20220321.62855-5.1 [59.7 kB] Get: 149 http://deb.debian.org/debian bookworm/main amd64 libteckit0 amd64 2.5.11+ds1-1+b1 [335 kB] Get: 150 http://deb.debian.org/debian bookworm/main amd64 libtexlua53-5 amd64 2022.20220321.62855-5.1 [110 kB] Get: 151 http://deb.debian.org/debian bookworm/main amd64 libtexluajit2 amd64 2022.20220321.62855-5.1 [246 kB] Get: 152 http://deb.debian.org/debian bookworm/main amd64 libxi6 amd64 2:1.8-1+b1 [84.2 kB] Get: 153 http://deb.debian.org/debian bookworm/main amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [58.3 kB] Get: 154 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get: 155 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB] Get: 156 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB] Get: 157 http://deb.debian.org/debian bookworm/main amd64 rdfind amd64 1.5.0-1.1+b1 [41.3 kB] Get: 158 http://deb.debian.org/debian bookworm/main amd64 sqlite3 amd64 3.40.1-2 [353 kB] Get: 159 http://deb.debian.org/debian bookworm/main amd64 symlinks amd64 1.4-4 [11.3 kB] Get: 160 http://deb.debian.org/debian bookworm/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get: 161 http://deb.debian.org/debian bookworm/main amd64 tex-common all 6.18 [32.5 kB] Get: 162 http://deb.debian.org/debian bookworm/main amd64 texlive-binaries amd64 2022.20220321.62855-5.1 [10.5 MB] Get: 163 http://deb.debian.org/debian bookworm/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 164 http://deb.debian.org/debian bookworm/main amd64 texlive-base all 2022.20230122-3 [21.9 MB] Get: 165 http://deb.debian.org/debian bookworm/main amd64 texlive-fonts-recommended all 2022.20230122-3 [4988 kB] Get: 166 http://deb.debian.org/debian bookworm/main amd64 texlive-latex-base all 2022.20230122-3 [1182 kB] Get: 167 http://deb.debian.org/debian bookworm/main amd64 texlive-latex-recommended all 2022.20230122-3 [8880 kB] Fetched 178 MB in 7s (25.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package autoconf-archive. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19591 files and directories currently installed.) Preparing to unpack .../000-autoconf-archive_20220903-3_all.deb ... Unpacking autoconf-archive (20220903-3) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../001-liblocale-gettext-perl_1.07-5_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package poppler-data. Preparing to unpack .../002-poppler-data_0.4.12-1_all.deb ... Unpacking poppler-data (0.4.12-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../003-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../006-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.21-12_amd64.deb ... 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Setting up texlive-binaries (2022.20220321.62855-5.1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2022.20230122-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up graphviz (2.42.2-7+b3) ... Setting up libgs10-common (10.0.0~dfsg-11) ... Setting up texlive-latex-base (2022.20230122-3) ... Setting up texlive-latex-recommended (2022.20230122-3) ... Setting up texlive-fonts-recommended (2022.20230122-3) ... Setting up libgs10:amd64 (10.0.0~dfsg-11) ... Setting up ghostscript (10.0.0~dfsg-11) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.31-1.2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/apophenia-1.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../apophenia_1.0+ds-8_source.changes dpkg-buildpackage: info: source package apophenia dpkg-buildpackage: info: source version 1.0+ds-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Jerome Benoit dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --builddirectory=_build dh_auto_clean -O--builddirectory=_build dh_autoreconf_clean -O--builddirectory=_build dh_clean -O--builddirectory=_build debian/rules build dh build --builddirectory=_build dh_update_autotools_config -O--builddirectory=_build dh_autoreconf -O--builddirectory=_build aclocal: warning: couldn't open directory 'm4': No such file or directory libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:10: warning: The macro `AC_CONFIG_HEADER' is obsolete. configure.ac:10: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:10: the top level configure.ac:27: warning: The macro `AC_PROG_CC_C99' is obsolete. configure.ac:27: You should run autoupdate. ./lib/autoconf/c.m4:1659: AC_PROG_CC_C99 is expanded from... configure.ac:27: the top level configure.ac:29: warning: The macro `ACX_PTHREAD' is obsolete. configure.ac:29: You should run autoupdate. aclocal.m4:491: ACX_PTHREAD is expanded from... configure.ac:29: the top level configure.ac:36: warning: The macro `AC_TRY_RUN' is obsolete. configure.ac:36: You should run autoupdate. ./lib/autoconf/general.m4:2997: AC_TRY_RUN is expanded from... aclocal.m4:927: AX_PATH_GSL is expanded from... configure.ac:36: the top level configure.ac:36: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:36: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... aclocal.m4:927: AX_PATH_GSL is expanded from... configure.ac:36: the top level configure.ac:45: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:45: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:45: the top level configure.ac:19: installing 'build-aux/compile' configure.ac:19: installing 'build-aux/config.guess' configure.ac:19: installing 'build-aux/config.sub' configure.ac:12: installing 'build-aux/install-sh' configure.ac:12: installing 'build-aux/missing' Makefile.am: installing 'build-aux/depcomp' cmd/Makefile.am:27: warning: '%'-style pattern rules are a GNU make extension docs/Makefile.am:84: warning: '%'-style pattern rules are a GNU make extension automake: warning: source file '$(top_builddir)/eg/apop_map_row.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/apop_map_row' automake: warning: possible forward-incompatibility. automake: At least one source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, this automake: behavior may change in a future Automake major version, with object automake: files being placed in the same subdirectory as the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. automake: warning: source file '$(top_builddir)/eg/binning.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/binning' automake: warning: source file '$(top_builddir)/eg/boot_clt.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/boot_clt' automake: warning: source file '$(top_builddir)/eg/cross_models.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/cross_models' automake: warning: source file '$(top_builddir)/eg/data_fill.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/data_fill' automake: warning: source file '$(top_builddir)/eg/db_fns.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/db_fns' automake: warning: source file '$(top_builddir)/eg/dconstrain.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/dconstrain' automake: warning: source file '$(top_builddir)/eg/dot_products.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/dot_products' automake: warning: source file '$(top_builddir)/eg/draw_to_db.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/draw_to_db' automake: warning: source file '$(top_builddir)/eg/entropy_model.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/entropy_model' automake: warning: source file '$(top_builddir)/eg/entropy_vector.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/entropy_vector' automake: warning: source file '$(top_builddir)/eg/f_test.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/f_test' automake: warning: source file '$(top_builddir)/eg/fake_logit.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/fake_logit' automake: warning: source file '$(top_builddir)/eg/fix_params.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/fix_params' automake: warning: source file '$(top_builddir)/eg/hills2.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/hills2' automake: warning: source file '$(top_builddir)/eg/iv.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/iv' automake: warning: source file '$(top_builddir)/eg/jack.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/jack' automake: warning: source file '$(top_builddir)/eg/jacobian.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/jacobian' automake: warning: source file '$(top_builddir)/eg/ks_tests.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/ks_tests' automake: warning: source file '$(top_builddir)/eg/logit.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/logit' automake: warning: source file '$(top_builddir)/eg/ml_imputation.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/ml_imputation' automake: warning: source file '$(top_builddir)/eg/normalization_demo.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/normalization_demo' automake: warning: source file '$(top_builddir)/eg/ols.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/ols' automake: warning: source file '$(top_builddir)/eg/ols_oneliner.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/ols_oneliner' automake: warning: source file '$(top_builddir)/eg/parameterization.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/parameterization' automake: warning: source file '$(top_builddir)/eg/pmf_test.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/pmf_test' automake: warning: source file '$(top_builddir)/eg/simple_subsets.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/simple_subsets' automake: warning: source file '$(top_builddir)/eg/some_cdfs.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/some_cdfs' automake: warning: source file '$(top_builddir)/eg/t_test_by_rows.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/t_test_by_rows' automake: warning: source file '$(top_builddir)/eg/test_distances.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/test_distances' automake: warning: source file '$(top_builddir)/eg/test_fisher.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/test_fisher' automake: warning: source file '$(top_builddir)/eg/test_harmonic.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/test_harmonic' automake: warning: source file '$(top_builddir)/eg/test_kl_divergence.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/test_kl_divergence' automake: warning: source file '$(top_builddir)/eg/test_pruning.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/test_pruning' automake: warning: source file '$(top_builddir)/eg/test_ranks.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/test_ranks' automake: warning: source file '$(top_builddir)/eg/test_regex.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:27: while processing program '$(top_builddir)/eg/test_regex' automake: warning: source file '$(top_builddir)/eg/test_updating.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/test_updating' automake: warning: source file '$(top_builddir)/eg/transform.c' is in a subdirectory, automake: but option 'subdir-objects' is disabled tests/Makefile.am:3: while processing program '$(top_builddir)/eg/transform' parallel-tests: installing 'build-aux/test-driver' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/apophenia-1.0+ds' dh_auto_configure -- --enable-maintainer-mode cd _build && ../configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-maintainer-mode checking whether make supports nested variables... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking if LD -Wl,--version-script works... yes checking for help2man... /usr/bin/help2man checking for gcc... (cached) gcc checking whether the compiler supports GNU C... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to enable C11 features... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking how to run the C preprocessor... gcc -E checking whether gcc is Clang... no checking whether pthreads work with "-pthread" and "-lpthread"... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking for gcc option to support OpenMP... -fopenmp checking for cos in -lm... yes checking for gsl-config... /usr/bin/gsl-config checking for GSL - version >= 1.12.0... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for mysqlclient... yes checking for SQLite3 library >= 3.0.0... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking for egrep... (cached) /bin/grep -E checking for float.h... yes checking for inttypes.h... (cached) yes checking for limits.h... yes checking for stddef.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for wchar.h... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... (cached) yes checking whether struct tm is in sys/time.h or time.h... time.h checking for ptrdiff_t... yes checking for __attribute__... yes checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for working strtod... yes checking for floor... no checking for memset... yes checking for pow... no checking for regcomp... yes checking for sqrt... no checking for strcasecmp... yes checking for asprintf... yes checking for bc... /usr/bin/bc checking for sqlite3... /usr/bin/sqlite3 checking whether to run extended tests... no dpkg-parsechangelog: error: cannot open file debian/changelog: No such file or directory checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating apophenia.pc config.status: creating apop.h config.status: creating Makefile config.status: creating transform/Makefile config.status: creating model/Makefile config.status: creating cmd/Makefile config.status: creating tests/Makefile config.status: creating docs/doxygen.conf config.status: creating docs/Makefile config.status: creating eg/Makefile config.status: creating tests/utilities_test config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make[1]: Leaving directory '/build/apophenia-1.0+ds' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/apophenia-1.0+ds' /usr/bin/make -C _build/docs doc make[2]: Entering directory '/build/apophenia-1.0+ds/_build/docs' cat ../../model/apop_bernoulli.c ../../model/apop_beta.c ../../model/apop_dirichlet.c ../../model/apop_exponential.c ../../model/apop_gamma.c ../../model/apop_kerneld.c ../../model/apop_loess.c ../../model/apop_multinomial.c ../../model/apop_multivariate_normal.c ../../model/apop_normal.c ../../model/apop_ols.c ../../model/apop_pmf.c ../../model/apop_poisson.c ../../model/apop_probit.c ../../model/apop_t.c ../../model/apop_uniform.c ../../model/apop_wishart.c ../../model/apop_yule.c ../../model/apop_zipf.c ../../transform/apop_coordinate_transform.c ../../transform/apop_cross.c ../../transform/apop_dconstrain.c ../../transform/apop_fix_params.c ../../transform/apop_mixture.c | awk -f ../../docs/make_model_doc.awk > model_doc.h /usr/bin/dot -Tpng < ../../docs/structs.dot > structs.png Fontconfig error: No writable cache directories /bin/mkdir -p include sed -e 's/__attribute.*;/;/;s/extern //' ../apop.h > include/apop.h doxygen doxygen.conf warning: Tag 'TCL_SUBST' at line 237 of file 'doxygen.conf' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 1001 of file 'doxygen.conf' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1703 of file 'doxygen.conf' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'RTF_SOURCE_CODE' at line 1777 of file 'doxygen.conf' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 1875 of file 'doxygen.conf' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 2055 of file 'doxygen.conf' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 2068 of file 'doxygen.conf' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 2077 of file 'doxygen.conf' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" for f in flake.gif search.gif right.png down.png tree.js ; do \ test -f ../../docs/$f && cp ../../docs/$f html/ ;\ done cp structs.png html/ sed -i -f ../../docs/edit_outline.sed html/index.html html/outline.html sed -i -f ../../docs/edit_group.sed html/group__models.html sed -i -f ../../docs/edit_width.sed html/*.html /build/apophenia-1.0+ds/_build/../docs/adjust sed: can't read latex/Makefile: No such file or directory sed: can't read latex/refman.tex: No such file or directory sed: can't read latex/refman.tex: No such file or directory sed: can't read latex/refman.tex: No such file or directory sed: can't read latex/refman.tex: No such file or directory sed: can't read latex/Makefile: No such file or directory sed: couldn't open file edit_group.sed: No such file or directory sed: can't read latex/group__models.tex: No such file or directory grep: latex/group__all__public.tex: No such file or directory sed: -e expression #1, char 37: unexpected `,' sed: can't read latex/*tex: No such file or directory sed: can't read latex/*tex: No such file or directory sed: can't read latex/*tex: No such file or directory sed: can't read latex/doxygen.sty: No such file or directory sed: can't read latex/doxygen.sty: No such file or directory sed: can't read latex/doxygen.sty: No such file or directory rdfind -outputname /dev/null -makesymlinks true html Now scanning "html", found 272 files. Now have 272 files in total. Removed 0 files due to nonunique device and inode. Total size is 3759239 bytes or 4 MiB Removed 175 files due to unique sizes from list. 97 files left. Now eliminating candidates based on first bytes: removed 14 files from list. 83 files left. Now eliminating candidates based on last bytes: removed 0 files from list. 83 files left. Now eliminating candidates based on sha1 checksum: removed 69 files from list. 14 files left. It seems like you have 14 files that are not unique Totally, 3 KiB can be reduced. Now making results file /dev/null Now making symbolic links. creating Making 7 links. symlinks -r -c -s -v html absolute: /build/apophenia-1.0+ds/_build/docs/html/search/variables_1.js -> /build/apophenia-1.0+ds/_build/docs/html/search/all_1.js changed: /build/apophenia-1.0+ds/_build/docs/html/search/variables_1.js -> all_1.js absolute: /build/apophenia-1.0+ds/_build/docs/html/search/variables_13.js -> /build/apophenia-1.0+ds/_build/docs/html/search/all_14.js changed: /build/apophenia-1.0+ds/_build/docs/html/search/variables_13.js -> all_14.js absolute: /build/apophenia-1.0+ds/_build/docs/html/search/variables_9.js -> /build/apophenia-1.0+ds/_build/docs/html/search/all_a.js changed: /build/apophenia-1.0+ds/_build/docs/html/search/variables_9.js -> all_a.js absolute: /build/apophenia-1.0+ds/_build/docs/html/search/variables_7.js -> /build/apophenia-1.0+ds/_build/docs/html/search/all_8.js changed: /build/apophenia-1.0+ds/_build/docs/html/search/variables_7.js -> all_8.js absolute: /build/apophenia-1.0+ds/_build/docs/html/search/variables_8.js -> /build/apophenia-1.0+ds/_build/docs/html/search/all_9.js changed: /build/apophenia-1.0+ds/_build/docs/html/search/variables_8.js -> all_9.js absolute: /build/apophenia-1.0+ds/_build/docs/html/search/variables_5.js -> /build/apophenia-1.0+ds/_build/docs/html/search/all_6.js changed: /build/apophenia-1.0+ds/_build/docs/html/search/variables_5.js -> all_6.js absolute: /build/apophenia-1.0+ds/_build/docs/html/search/variables_11.js -> /build/apophenia-1.0+ds/_build/docs/html/search/all_12.js changed: /build/apophenia-1.0+ds/_build/docs/html/search/variables_11.js -> all_12.js rm -f html/jquery.js rm -f html/formula.repository rm -f html/_formulas.tex html/_formulas.log make[2]: Leaving directory '/build/apophenia-1.0+ds/_build/docs' make[1]: Leaving directory '/build/apophenia-1.0+ds' dh_auto_build -O--builddirectory=_build -Napophenia-doc cd _build && make -j15 make[1]: Entering directory '/build/apophenia-1.0+ds/_build' make all-recursive make[2]: Entering directory '/build/apophenia-1.0+ds/_build' Making all in transform make[3]: Entering directory '/build/apophenia-1.0+ds/_build/transform' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../transform -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o libapoptransform_la-apop_dconstrain.lo `test -f 'apop_dconstrain.c' || echo '../../transform/'`apop_dconstrain.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../transform -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o libapoptransform_la-apop_fix_params.lo `test -f 'apop_fix_params.c' || echo '../../transform/'`apop_fix_params.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../transform -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o libapoptransform_la-apop_coordinate_transform.lo `test -f 'apop_coordinate_transform.c' || echo '../../transform/'`apop_coordinate_transform.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../transform -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o libapoptransform_la-apop_mixture.lo `test -f 'apop_mixture.c' || echo '../../transform/'`apop_mixture.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../transform -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o libapoptransform_la-apop_cross.lo `test -f 'apop_cross.c' || echo '../../transform/'`apop_cross.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../transform -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../transform/apop_coordinate_transform.c -fPIC -DPIC -o .libs/libapoptransform_la-apop_coordinate_transform.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../transform -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../transform/apop_dconstrain.c -fPIC -DPIC -o .libs/libapoptransform_la-apop_dconstrain.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../transform -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../transform/apop_fix_params.c -fPIC -DPIC -o .libs/libapoptransform_la-apop_fix_params.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../transform -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../transform/apop_mixture.c -fPIC -DPIC -o .libs/libapoptransform_la-apop_mixture.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../transform -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../transform/apop_cross.c -fPIC -DPIC -o .libs/libapoptransform_la-apop_cross.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../transform -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../transform/apop_coordinate_transform.c -o libapoptransform_la-apop_coordinate_transform.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../transform -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../transform/apop_dconstrain.c -o libapoptransform_la-apop_dconstrain.o >/dev/null 2>&1 ../../transform/apop_fix_params.c: In function 'apop_model_fix_params': ../../transform/apop_fix_params.c:266:39: warning: ', with some params fixed' directive output may be truncated writing 24 bytes into a region of size between 0 and 100 [-Wformat-truncation=] 266 | snprintf(model_out->name, 100, "%s, with some params fixed", model_in->name); | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:906, from /usr/include/gsl/gsl_errno.h:23, from /usr/include/gsl/gsl_rng.h:24, from ../apop.h:32, from ../../apop_internal.h:83, from ../../transform/apop_fix_params.c:8: In function 'snprintf', inlined from 'apop_model_fix_params' at ../../transform/apop_fix_params.c:266:5: /usr/include/x86_64-linux-gnu/bits/stdio2.h:54:10: note: '__builtin___snprintf_chk' output between 25 and 125 bytes into a destination of size 100 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../transform -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../transform/apop_cross.c -o libapoptransform_la-apop_cross.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../transform -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../transform/apop_mixture.c -o libapoptransform_la-apop_mixture.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../transform -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security 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-D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_bernoulli.c -fPIC -DPIC -o .libs/libapopmodel_la-apop_bernoulli.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_loess.c -fPIC -DPIC -o .libs/libapopmodel_la-apop_loess.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_multivariate_normal.c -fPIC -DPIC -o .libs/libapopmodel_la-apop_multivariate_normal.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_normal.c -fPIC -DPIC -o .libs/libapopmodel_la-apop_normal.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_multinomial.c -fPIC -DPIC -o .libs/libapopmodel_la-apop_multinomial.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_poisson.c -fPIC -DPIC -o .libs/libapopmodel_la-apop_poisson.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_ols.c -fPIC -DPIC -o .libs/libapopmodel_la-apop_ols.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_t.c -fPIC -DPIC -o .libs/libapopmodel_la-apop_t.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_probit.c -fPIC -DPIC -o .libs/libapopmodel_la-apop_probit.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_pmf.c -fPIC -DPIC -o .libs/libapopmodel_la-apop_pmf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_exponential.c -o libapopmodel_la-apop_exponential.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 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-D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_gamma.c -o libapopmodel_la-apop_gamma.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_beta.c -o libapopmodel_la-apop_beta.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_poisson.c -o libapopmodel_la-apop_poisson.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_t.c -o libapopmodel_la-apop_t.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_multinomial.c -o libapopmodel_la-apop_multinomial.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_kerneld.c -o libapopmodel_la-apop_kerneld.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o libapopmodel_la-apop_uniform.lo `test -f 'apop_uniform.c' || echo '../../model/'`apop_uniform.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o libapopmodel_la-apop_wishart.lo `test -f 'apop_wishart.c' || echo '../../model/'`apop_wishart.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 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../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_probit.c -o libapopmodel_la-apop_probit.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_normal.c -o libapopmodel_la-apop_normal.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_yule.c -fPIC -DPIC -o .libs/libapopmodel_la-apop_yule.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o libapopmodel_la-apop_zipf.lo `test -f 'apop_zipf.c' || echo '../../model/'`apop_zipf.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_pmf.c -o libapopmodel_la-apop_pmf.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_wishart.c -o libapopmodel_la-apop_wishart.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_zipf.c -fPIC -DPIC -o .libs/libapopmodel_la-apop_zipf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_uniform.c -o libapopmodel_la-apop_uniform.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_ols.c -o libapopmodel_la-apop_ols.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_yule.c -o libapopmodel_la-apop_yule.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_zipf.c -o libapopmodel_la-apop_zipf.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../model -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../../model/apop_loess.c -o libapopmodel_la-apop_loess.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link gcc -I ../.. -pthread -fopenmp -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o libapopmodel.la libapopmodel_la-apop_bernoulli.lo libapopmodel_la-apop_beta.lo libapopmodel_la-apop_dirichlet.lo libapopmodel_la-apop_exponential.lo libapopmodel_la-apop_gamma.lo libapopmodel_la-apop_kerneld.lo libapopmodel_la-apop_loess.lo libapopmodel_la-apop_multinomial.lo libapopmodel_la-apop_multivariate_normal.lo libapopmodel_la-apop_normal.lo libapopmodel_la-apop_ols.lo libapopmodel_la-apop_pmf.lo libapopmodel_la-apop_poisson.lo libapopmodel_la-apop_probit.lo libapopmodel_la-apop_t.lo libapopmodel_la-apop_uniform.lo libapopmodel_la-apop_wishart.lo libapopmodel_la-apop_yule.lo libapopmodel_la-apop_zipf.lo libtool: link: ar cr .libs/libapopmodel.a .libs/libapopmodel_la-apop_bernoulli.o .libs/libapopmodel_la-apop_beta.o .libs/libapopmodel_la-apop_dirichlet.o .libs/libapopmodel_la-apop_exponential.o .libs/libapopmodel_la-apop_gamma.o .libs/libapopmodel_la-apop_kerneld.o .libs/libapopmodel_la-apop_loess.o .libs/libapopmodel_la-apop_multinomial.o .libs/libapopmodel_la-apop_multivariate_normal.o .libs/libapopmodel_la-apop_normal.o .libs/libapopmodel_la-apop_ols.o .libs/libapopmodel_la-apop_pmf.o .libs/libapopmodel_la-apop_poisson.o .libs/libapopmodel_la-apop_probit.o .libs/libapopmodel_la-apop_t.o .libs/libapopmodel_la-apop_uniform.o .libs/libapopmodel_la-apop_wishart.o .libs/libapopmodel_la-apop_yule.o .libs/libapopmodel_la-apop_zipf.o libtool: link: ranlib .libs/libapopmodel.a libtool: link: ( cd ".libs" && rm -f "libapopmodel.la" && ln -s "../libapopmodel.la" "libapopmodel.la" ) make[3]: Leaving directory '/build/apophenia-1.0+ds/_build/model' Making all in . make[3]: Entering directory '/build/apophenia-1.0+ds/_build' /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o asprintf.lo ../asprintf.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o libapopkernel_la-apop_arms.lo `test -f 'apop_arms.c' || echo '../'`apop_arms.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o 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'../'`apop_fexact.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o libapopkernel_la-apop_hist.lo `test -f 'apop_hist.c' || echo '../'`apop_hist.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o libapopkernel_la-apop_linear_algebra.lo `test -f 'apop_linear_algebra.c' || echo '../'`apop_linear_algebra.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 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/bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o libapopkernel_la-apop_missing_data.lo `test -f 'apop_missing_data.c' || echo '../'`apop_missing_data.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o libapopkernel_la-apop_mle.lo `test -f 'apop_mle.c' || echo '../'`apop_mle.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../asprintf.c -fPIC -DPIC -o .libs/asprintf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_bootstrap.c -fPIC -DPIC -o .libs/libapopkernel_la-apop_bootstrap.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_conversions.c -fPIC -DPIC -o .libs/libapopkernel_la-apop_conversions.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_data.c -fPIC -DPIC -o .libs/libapopkernel_la-apop_data.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_asst.c -fPIC -DPIC -o .libs/libapopkernel_la-apop_asst.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_arms.c -fPIC -DPIC -o .libs/libapopkernel_la-apop_arms.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_fexact.c -fPIC -DPIC -o .libs/libapopkernel_la-apop_fexact.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_db.c -fPIC -DPIC -o .libs/libapopkernel_la-apop_db.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_linear_constraint.c -fPIC -DPIC -o .libs/libapopkernel_la-apop_linear_constraint.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_mle.c -fPIC -DPIC -o .libs/libapopkernel_la-apop_mle.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_missing_data.c -fPIC -DPIC -o .libs/libapopkernel_la-apop_missing_data.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_linear_algebra.c -fPIC -DPIC -o .libs/libapopkernel_la-apop_linear_algebra.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_mcmc.c -fPIC -DPIC -o .libs/libapopkernel_la-apop_mcmc.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../asprintf.c -o asprintf.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_hist.c -fPIC -DPIC -o .libs/libapopkernel_la-apop_hist.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_mapply.c -fPIC -DPIC -o .libs/libapopkernel_la-apop_mapply.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o libapopkernel_la-apop_model.lo `test -f 'apop_model.c' || echo '../'`apop_model.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_model.c -fPIC -DPIC -o .libs/libapopkernel_la-apop_model.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_missing_data.c -o libapopkernel_la-apop_missing_data.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_linear_constraint.c -o libapopkernel_la-apop_linear_constraint.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_bootstrap.c -o libapopkernel_la-apop_bootstrap.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_asst.c -o libapopkernel_la-apop_asst.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_mcmc.c -o libapopkernel_la-apop_mcmc.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o libapopkernel_la-apop_name.lo `test -f 'apop_name.c' || echo '../'`apop_name.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_linear_algebra.c -o libapopkernel_la-apop_linear_algebra.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o libapopkernel_la-apop_output.lo `test -f 'apop_output.c' || echo '../'`apop_output.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_hist.c -o libapopkernel_la-apop_hist.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_arms.c -o libapopkernel_la-apop_arms.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_name.c -fPIC -DPIC -o .libs/libapopkernel_la-apop_name.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_mapply.c -o libapopkernel_la-apop_mapply.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_output.c -fPIC -DPIC -o .libs/libapopkernel_la-apop_output.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_model.c -o libapopkernel_la-apop_model.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_conversions.c -o libapopkernel_la-apop_conversions.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o libapopkernel_la-apop_rake.lo `test -f 'apop_rake.c' || echo '../'`apop_rake.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o libapopkernel_la-apop_regression.lo `test -f 'apop_regression.c' || echo '../'`apop_regression.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o libapopkernel_la-apop_settings.lo `test -f 'apop_settings.c' || echo '../'`apop_settings.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_mle.c -o libapopkernel_la-apop_mle.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_name.c -o libapopkernel_la-apop_name.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_rake.c -fPIC -DPIC -o .libs/libapopkernel_la-apop_rake.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_regression.c -fPIC -DPIC -o .libs/libapopkernel_la-apop_regression.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_settings.c -fPIC -DPIC -o .libs/libapopkernel_la-apop_settings.o ../apop_output.c: In function 'apop_data_print_core': ../apop_output.c:260:18: warning: argument 1 null where non-null expected [-Wnonnull] 260 | !strcmp(apop_opts.db_name_column, "row_names")) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./apop.h:31, from ../apop_internal.h:83, from ../apop_output.c:7: /usr/include/string.h:156:12: note: in a call to function 'strcmp' declared 'nonnull' 156 | extern int strcmp (const char *__s1, const char *__s2) | ^~~~~~ /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o libapopkernel_la-apop_sort.lo `test -f 'apop_sort.c' || echo '../'`apop_sort.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_sort.c -fPIC -DPIC -o .libs/libapopkernel_la-apop_sort.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_output.c -o libapopkernel_la-apop_output.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o libapopkernel_la-apop_stats.lo `test -f 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-fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o libapopkernel_la-apop_update.lo `test -f 'apop_update.c' || echo '../'`apop_update.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o libapopkernel_la-apop_vtables.lo `test -f 'apop_vtables.c' || echo '../'`apop_vtables.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_db.c -o libapopkernel_la-apop_db.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_stats.c -fPIC -DPIC -o .libs/libapopkernel_la-apop_stats.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_tests.c -fPIC -DPIC -o .libs/libapopkernel_la-apop_tests.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_vtables.c -fPIC -DPIC -o .libs/libapopkernel_la-apop_vtables.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_update.c -fPIC -DPIC -o .libs/libapopkernel_la-apop_update.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_data.c -o libapopkernel_la-apop_data.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_vtables.c -o libapopkernel_la-apop_vtables.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_regression.c -o libapopkernel_la-apop_regression.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_rake.c -o libapopkernel_la-apop_rake.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_sort.c -o libapopkernel_la-apop_sort.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_update.c -o libapopkernel_la-apop_update.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_tests.c -o libapopkernel_la-apop_tests.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_stats.c -o libapopkernel_la-apop_stats.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c ../apop_fexact.c -o libapopkernel_la-apop_fexact.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=link gcc -pthread -fopenmp -I/usr/include/mariadb/ -I/usr/include -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o libapopkernel.la libapopkernel_la-apop_arms.lo libapopkernel_la-apop_asst.lo libapopkernel_la-apop_bootstrap.lo libapopkernel_la-apop_conversions.lo libapopkernel_la-apop_data.lo libapopkernel_la-apop_db.lo libapopkernel_la-apop_fexact.lo libapopkernel_la-apop_hist.lo libapopkernel_la-apop_linear_algebra.lo libapopkernel_la-apop_linear_constraint.lo libapopkernel_la-apop_mapply.lo libapopkernel_la-apop_mcmc.lo libapopkernel_la-apop_missing_data.lo libapopkernel_la-apop_mle.lo libapopkernel_la-apop_model.lo libapopkernel_la-apop_name.lo libapopkernel_la-apop_output.lo libapopkernel_la-apop_rake.lo libapopkernel_la-apop_regression.lo libapopkernel_la-apop_settings.lo libapopkernel_la-apop_sort.lo libapopkernel_la-apop_stats.lo libapopkernel_la-apop_tests.lo libapopkernel_la-apop_update.lo libapopkernel_la-apop_vtables.lo libtool: link: ar cr .libs/libapopkernel.a .libs/libapopkernel_la-apop_arms.o .libs/libapopkernel_la-apop_asst.o .libs/libapopkernel_la-apop_bootstrap.o .libs/libapopkernel_la-apop_conversions.o .libs/libapopkernel_la-apop_data.o .libs/libapopkernel_la-apop_db.o .libs/libapopkernel_la-apop_fexact.o .libs/libapopkernel_la-apop_hist.o .libs/libapopkernel_la-apop_linear_algebra.o .libs/libapopkernel_la-apop_linear_constraint.o .libs/libapopkernel_la-apop_mapply.o .libs/libapopkernel_la-apop_mcmc.o .libs/libapopkernel_la-apop_missing_data.o .libs/libapopkernel_la-apop_mle.o .libs/libapopkernel_la-apop_model.o .libs/libapopkernel_la-apop_name.o .libs/libapopkernel_la-apop_output.o .libs/libapopkernel_la-apop_rake.o .libs/libapopkernel_la-apop_regression.o .libs/libapopkernel_la-apop_settings.o .libs/libapopkernel_la-apop_sort.o .libs/libapopkernel_la-apop_stats.o .libs/libapopkernel_la-apop_tests.o .libs/libapopkernel_la-apop_update.o .libs/libapopkernel_la-apop_vtables.o libtool: link: ranlib .libs/libapopkernel.a libtool: link: ( cd ".libs" && rm -f "libapopkernel.la" && ln -s "../libapopkernel.la" "libapopkernel.la" ) /bin/bash ./libtool --tag=CC --mode=link gcc -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -version-info 2:0:0 -Wl,--version-script=../apophenia.map -Wl,-z,relro -Wl,-z,now -o libapophenia.la -rpath /usr/lib/x86_64-linux-gnu asprintf.lo libapopkernel.la transform/libapoptransform.la model/libapopmodel.la -L/usr/lib/x86_64-linux-gnu/ -lmariadb -L/usr/lib -lsqlite3 -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -lpthread -lm libtool: link: gcc -shared -fPIC -DPIC .libs/asprintf.o -Wl,--whole-archive ./.libs/libapopkernel.a transform/.libs/libapoptransform.a model/.libs/libapopmodel.a -Wl,--no-whole-archive -L/usr/lib/x86_64-linux-gnu/ -lmariadb -L/usr/lib -lsqlite3 -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lpthread -lm -g -O3 -fstack-protector-strong -fopenmp -Wl,--version-script=../apophenia.map -Wl,-z -Wl,relro -Wl,-z -Wl,now -fopenmp -pthread -Wl,-soname -Wl,libapophenia.so.2 -o .libs/libapophenia.so.2.0.0 libtool: link: (cd ".libs" && rm -f "libapophenia.so.2" && ln -s "libapophenia.so.2.0.0" "libapophenia.so.2") libtool: link: (cd ".libs" && rm -f "libapophenia.so" && ln -s "libapophenia.so.2.0.0" "libapophenia.so") libtool: link: (cd .libs/libapophenia.lax/libapopkernel.a && ar x "/build/apophenia-1.0+ds/_build/./.libs/libapopkernel.a") libtool: link: (cd .libs/libapophenia.lax/libapoptransform.a && ar x "/build/apophenia-1.0+ds/_build/transform/.libs/libapoptransform.a") libtool: link: (cd .libs/libapophenia.lax/libapopmodel.a && ar x "/build/apophenia-1.0+ds/_build/model/.libs/libapopmodel.a") libtool: link: ar cr .libs/libapophenia.a asprintf.o .libs/libapophenia.lax/libapopkernel.a/libapopkernel_la-apop_arms.o .libs/libapophenia.lax/libapopkernel.a/libapopkernel_la-apop_asst.o .libs/libapophenia.lax/libapopkernel.a/libapopkernel_la-apop_bootstrap.o .libs/libapophenia.lax/libapopkernel.a/libapopkernel_la-apop_conversions.o .libs/libapophenia.lax/libapopkernel.a/libapopkernel_la-apop_data.o .libs/libapophenia.lax/libapopkernel.a/libapopkernel_la-apop_db.o .libs/libapophenia.lax/libapopkernel.a/libapopkernel_la-apop_fexact.o .libs/libapophenia.lax/libapopkernel.a/libapopkernel_la-apop_hist.o .libs/libapophenia.lax/libapopkernel.a/libapopkernel_la-apop_linear_algebra.o .libs/libapophenia.lax/libapopkernel.a/libapopkernel_la-apop_linear_constraint.o 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"libapophenia.la" ) make[3]: Leaving directory '/build/apophenia-1.0+ds/_build' Making all in cmd make[3]: Entering directory '/build/apophenia-1.0+ds/_build/cmd' gcc -DHAVE_CONFIG_H -I. -I../../cmd -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o apop_text_to_db.o ../../cmd/apop_text_to_db.c gcc -DHAVE_CONFIG_H -I. -I../../cmd -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o apop_db_to_crosstab.o ../../cmd/apop_db_to_crosstab.c gcc -DHAVE_CONFIG_H -I. -I../../cmd -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I ../.. -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o apop_plot_query.o ../../cmd/apop_plot_query.c /bin/bash ../libtool --tag=CC --mode=link gcc -I ../.. -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o apop_text_to_db apop_text_to_db.o ../libapophenia.la -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm /bin/bash ../libtool --tag=CC --mode=link gcc -I ../.. -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o apop_db_to_crosstab apop_db_to_crosstab.o ../libapophenia.la -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm /bin/bash ../libtool --tag=CC --mode=link gcc -I ../.. -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z,relro -Wl,-z,now -o apop_plot_query apop_plot_query.o ../libapophenia.la -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm libtool: link: gcc -I ../.. -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/apop_text_to_db apop_text_to_db.o ../.libs/libapophenia.so -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -pthread -fopenmp libtool: link: gcc -I ../.. -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/apop_db_to_crosstab apop_db_to_crosstab.o ../.libs/libapophenia.so -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -pthread -fopenmp /usr/bin/help2man \ -s 1 \ --manual="Apophenia" --version-string="1.0" --source="Apophenia (Debian )" --libtool --no-info \ -I ../../debian/man/apop_text_to_db.h2m \ -n "command line utility to convert a text file into a database table" \ -o apop_text_to_db.1 \ ../cmd/apop_text_to_db libtool: link: gcc -I ../.. -I/usr/include -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/apop_plot_query apop_plot_query.o ../.libs/libapophenia.so -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -pthread -fopenmp /usr/bin/help2man \ -s 1 \ --manual="Apophenia" --version-string="1.0" --source="Apophenia (Debian )" --libtool --no-info \ -I ../../debian/man/apop_db_to_crosstab.h2m \ -n "command line utility to convert a three-column table to a crosstab" \ -o apop_db_to_crosstab.1 \ ../cmd/apop_db_to_crosstab /usr/bin/help2man \ -s 1 \ --manual="Apophenia" --version-string="1.0" --source="Apophenia (Debian )" --libtool --no-info \ -I ../../debian/man/apop_plot_query.h2m \ -n "command line utility to take in a query and put out a Gnuplot table file" \ -o apop_plot_query.1 \ ../cmd/apop_plot_query make[3]: Leaving directory '/build/apophenia-1.0+ds/_build/cmd' Making all in eg make[3]: Entering directory '/build/apophenia-1.0+ds/_build/eg' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/apophenia-1.0+ds/_build/eg' Making all in tests make[3]: Entering directory '/build/apophenia-1.0+ds/_build/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/apophenia-1.0+ds/_build/tests' Making all in docs make[3]: Entering directory '/build/apophenia-1.0+ds/_build/docs' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/apophenia-1.0+ds/_build/docs' make[2]: Leaving directory '/build/apophenia-1.0+ds/_build' make[1]: Leaving directory '/build/apophenia-1.0+ds/_build' dh_auto_test -O--builddirectory=_build -Napophenia-doc cd _build && make -j15 check "TESTSUITEFLAGS=-j15 --verbose" VERBOSE=1 make[1]: Entering directory '/build/apophenia-1.0+ds/_build' Making check in transform make[2]: Entering directory '/build/apophenia-1.0+ds/_build/transform' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/apophenia-1.0+ds/_build/transform' Making check in model make[2]: Entering directory '/build/apophenia-1.0+ds/_build/model' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/apophenia-1.0+ds/_build/model' Making check in . make[2]: Entering directory '/build/apophenia-1.0+ds/_build' make[2]: Leaving directory '/build/apophenia-1.0+ds/_build' Making check in cmd make[2]: Entering directory '/build/apophenia-1.0+ds/_build/cmd' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/apophenia-1.0+ds/_build/cmd' Making check in eg make[2]: Entering directory '/build/apophenia-1.0+ds/_build/eg' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/apophenia-1.0+ds/_build/eg' Making check in tests make[2]: Entering directory '/build/apophenia-1.0+ds/_build/tests' make db_tests error_test factors nist_tests sort_example test_apop ../eg/apop_map_row ../eg/binning ../eg/boot_clt ../eg/data_fill ../eg/draw_to_db ../eg/db_fns ../eg/dot_products ../eg/entropy_vector ../eg/iv ../eg/ks_tests ../eg/logit ../eg/fake_logit ../eg/normalization_demo ../eg/ols ../eg/ols_oneliner ../eg/parameterization ../eg/simple_subsets ../eg/t_test_by_rows ../eg/test_distances ../eg/test_fisher ../eg/test_harmonic ../eg/test_pruning ../eg/test_regex make[3]: Entering directory '/build/apophenia-1.0+ds/_build/tests' gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o db_tests.o ../../tests/db_tests.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o error_test.o ../../tests/error_test.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o factors.o ../../tests/factors.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o nist_tests.o ../../tests/nist_tests.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o sort_example.o ../../tests/sort_example.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o test_apop.o ../../tests/test_apop.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o apop_map_row.o `test -f '../eg/apop_map_row.c' || echo '../../tests/'`../eg/apop_map_row.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o binning.o `test -f '../eg/binning.c' || echo '../../tests/'`../eg/binning.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o boot_clt.o `test -f '../eg/boot_clt.c' || echo '../../tests/'`../eg/boot_clt.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o data_fill.o `test -f '../eg/data_fill.c' || echo '../../tests/'`../eg/data_fill.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o draw_to_db.o `test -f '../eg/draw_to_db.c' || echo '../../tests/'`../eg/draw_to_db.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o db_fns.o `test -f '../eg/db_fns.c' || echo '../../tests/'`../eg/db_fns.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o dot_products.o `test -f '../eg/dot_products.c' || echo '../../tests/'`../eg/dot_products.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o entropy_vector.o `test -f '../eg/entropy_vector.c' || echo '../../tests/'`../eg/entropy_vector.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o iv.o `test -f '../eg/iv.c' || echo '../../tests/'`../eg/iv.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o ks_tests.o `test -f '../eg/ks_tests.c' || echo '../../tests/'`../eg/ks_tests.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o logit.o `test -f '../eg/logit.c' || echo '../../tests/'`../eg/logit.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o fake_logit.o `test -f '../eg/fake_logit.c' || echo '../../tests/'`../eg/fake_logit.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o normalization_demo.o `test -f '../eg/normalization_demo.c' || echo '../../tests/'`../eg/normalization_demo.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o ols.o `test -f '../eg/ols.c' || echo '../../tests/'`../eg/ols.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o ols_oneliner.o `test -f '../eg/ols_oneliner.c' || echo '../../tests/'`../eg/ols_oneliner.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o parameterization.o `test -f '../eg/parameterization.c' || echo '../../tests/'`../eg/parameterization.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o simple_subsets.o `test -f '../eg/simple_subsets.c' || echo '../../tests/'`../eg/simple_subsets.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o t_test_by_rows.o `test -f '../eg/t_test_by_rows.c' || echo '../../tests/'`../eg/t_test_by_rows.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o test_distances.o `test -f '../eg/test_distances.c' || echo '../../tests/'`../eg/test_distances.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o test_fisher.o `test -f '../eg/test_fisher.c' || echo '../../tests/'`../eg/test_fisher.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o test_harmonic.o `test -f '../eg/test_harmonic.c' || echo '../../tests/'`../eg/test_harmonic.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o test_pruning.o `test -f '../eg/test_pruning.c' || echo '../../tests/'`../eg/test_pruning.c gcc -DHAVE_CONFIG_H -I. -I../../tests -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -c -o test_regex.o `test -f '../eg/test_regex.c' || echo '../../tests/'`../eg/test_regex.c /bin/bash ../libtool --tag=CC --mode=link gcc -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp ../libapophenia.la -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -Wl,-z,relro -Wl,-z,now -o error_test error_test.o /bin/bash ../libtool --tag=CC --mode=link gcc -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp ../libapophenia.la -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -Wl,-z,relro -Wl,-z,now -o factors factors.o /bin/bash ../libtool --tag=CC --mode=link gcc -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp ../libapophenia.la -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -Wl,-z,relro -Wl,-z,now -o nist_tests nist_tests.o /bin/bash ../libtool --tag=CC --mode=link gcc -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp ../libapophenia.la -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -Wl,-z,relro -Wl,-z,now -o sort_example sort_example.o /bin/bash ../libtool --tag=CC --mode=link gcc -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp ../libapophenia.la -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -Wl,-z,relro -Wl,-z,now -o ../eg/apop_map_row apop_map_row.o 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-fstack-protector-strong -Wformat -Werror=format-security -fopenmp ../libapophenia.la -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -Wl,-z,relro -Wl,-z,now -o db_tests db_tests.o libtool: link: gcc -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o ../eg/.libs/t_test_by_rows t_test_by_rows.o ../.libs/libapophenia.so -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -pthread -fopenmp libtool: link: gcc -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o ../eg/.libs/test_pruning test_pruning.o ../.libs/libapophenia.so -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -pthread -fopenmp libtool: link: gcc -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o ../eg/.libs/test_harmonic test_harmonic.o ../.libs/libapophenia.so -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -pthread -fopenmp libtool: link: gcc -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o ../eg/.libs/test_distances test_distances.o ../.libs/libapophenia.so -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -pthread -fopenmp libtool: link: gcc -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o ../eg/.libs/test_regex test_regex.o ../.libs/libapophenia.so -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -pthread -fopenmp libtool: link: gcc -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o ../eg/.libs/test_fisher test_fisher.o ../.libs/libapophenia.so -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -pthread -fopenmp libtool: link: gcc -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/db_tests db_tests.o ../.libs/libapophenia.so -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -pthread -fopenmp /bin/bash ../libtool --tag=CC --mode=link gcc -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp ../libapophenia.la -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -Wl,-z,relro -Wl,-z,now -o test_apop test_apop.o libtool: link: gcc -DTesting -DDatadir=\"../../tests/\" -I../../tests -I../.. -I/usr/include -Wno-unused-result -g -O3 -ffile-prefix-map=/build/apophenia-1.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/test_apop test_apop.o ../.libs/libapophenia.so -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -pthread -fopenmp make[3]: Leaving directory '/build/apophenia-1.0+ds/_build/tests' make check-TESTS make[3]: Entering directory '/build/apophenia-1.0+ds/_build/tests' make[4]: Entering directory '/build/apophenia-1.0+ds/_build/tests' PASS: factors PASS: nist_tests PASS: error_test PASS: db_tests PASS: ../eg/binning PASS: ../eg/data_fill PASS: sort_example PASS: ../eg/apop_map_row PASS: ../eg/draw_to_db PASS: ../eg/entropy_vector PASS: ../eg/normalization_demo PASS: ../eg/ols_oneliner PASS: ../eg/ols PASS: ../eg/iv PASS: ../eg/simple_subsets PASS: ../eg/test_distances PASS: ../eg/test_fisher PASS: ../eg/dot_products PASS: ../eg/test_harmonic PASS: ../eg/test_pruning PASS: ../eg/parameterization PASS: ../eg/test_regex PASS: utilities_test PASS: ../eg/t_test_by_rows PASS: ../eg/ks_tests PASS: ../eg/fake_logit PASS: ../eg/db_fns PASS: ../eg/boot_clt PASS: ../eg/logit PASS: test_apop ============================================================================ Testsuite summary for apophenia 1.0 ============================================================================ # TOTAL: 30 # PASS: 30 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/build/apophenia-1.0+ds/_build/tests' make[3]: Leaving directory '/build/apophenia-1.0+ds/_build/tests' make[2]: Leaving directory '/build/apophenia-1.0+ds/_build/tests' Making check in docs make[2]: Entering directory '/build/apophenia-1.0+ds/_build/docs' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/apophenia-1.0+ds/_build/docs' make[1]: Leaving directory '/build/apophenia-1.0+ds/_build' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --builddirectory=_build dh_testroot -O--builddirectory=_build dh_prep -O--builddirectory=_build dh_auto_install -O--builddirectory=_build -Napophenia-doc cd _build && make -j1 install DESTDIR=/build/apophenia-1.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/apophenia-1.0+ds/_build' Making install in transform make[2]: Entering directory '/build/apophenia-1.0+ds/_build/transform' make[3]: Entering directory '/build/apophenia-1.0+ds/_build/transform' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/apophenia-1.0+ds/_build/transform' make[2]: Leaving directory '/build/apophenia-1.0+ds/_build/transform' Making install in model make[2]: Entering directory '/build/apophenia-1.0+ds/_build/model' make[3]: Entering directory '/build/apophenia-1.0+ds/_build/model' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/apophenia-1.0+ds/_build/model' make[2]: Leaving directory '/build/apophenia-1.0+ds/_build/model' Making install in . make[2]: Entering directory '/build/apophenia-1.0+ds/_build' make[3]: Entering directory '/build/apophenia-1.0+ds/_build' /bin/mkdir -p '/build/apophenia-1.0+ds/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c libapophenia.la '/build/apophenia-1.0+ds/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libapophenia.so.2.0.0 /build/apophenia-1.0+ds/debian/tmp/usr/lib/x86_64-linux-gnu/libapophenia.so.2.0.0 libtool: install: (cd /build/apophenia-1.0+ds/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libapophenia.so.2.0.0 libapophenia.so.2 || { rm -f libapophenia.so.2 && ln -s libapophenia.so.2.0.0 libapophenia.so.2; }; }) libtool: install: (cd /build/apophenia-1.0+ds/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libapophenia.so.2.0.0 libapophenia.so || { rm -f libapophenia.so && ln -s libapophenia.so.2.0.0 libapophenia.so; }; }) libtool: install: /usr/bin/install -c .libs/libapophenia.lai /build/apophenia-1.0+ds/debian/tmp/usr/lib/x86_64-linux-gnu/libapophenia.la libtool: install: /usr/bin/install -c .libs/libapophenia.a /build/apophenia-1.0+ds/debian/tmp/usr/lib/x86_64-linux-gnu/libapophenia.a libtool: install: chmod 644 /build/apophenia-1.0+ds/debian/tmp/usr/lib/x86_64-linux-gnu/libapophenia.a libtool: install: ranlib /build/apophenia-1.0+ds/debian/tmp/usr/lib/x86_64-linux-gnu/libapophenia.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/apophenia-1.0+ds/debian/tmp/usr/include' /usr/bin/install -c -m 644 apop.h '/build/apophenia-1.0+ds/debian/tmp/usr/include' /bin/mkdir -p '/build/apophenia-1.0+ds/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 apophenia.pc '/build/apophenia-1.0+ds/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[3]: Leaving directory '/build/apophenia-1.0+ds/_build' make[2]: Leaving directory '/build/apophenia-1.0+ds/_build' Making install in cmd make[2]: Entering directory '/build/apophenia-1.0+ds/_build/cmd' make[3]: Entering directory '/build/apophenia-1.0+ds/_build/cmd' /bin/mkdir -p '/build/apophenia-1.0+ds/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c apop_text_to_db apop_db_to_crosstab apop_plot_query '/build/apophenia-1.0+ds/debian/tmp/usr/bin' libtool: warning: '../libapophenia.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/apop_text_to_db /build/apophenia-1.0+ds/debian/tmp/usr/bin/apop_text_to_db libtool: warning: '../libapophenia.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/apop_db_to_crosstab /build/apophenia-1.0+ds/debian/tmp/usr/bin/apop_db_to_crosstab libtool: warning: '../libapophenia.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/apop_plot_query /build/apophenia-1.0+ds/debian/tmp/usr/bin/apop_plot_query /bin/mkdir -p '/build/apophenia-1.0+ds/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 apop_text_to_db.1 apop_db_to_crosstab.1 apop_plot_query.1 '/build/apophenia-1.0+ds/debian/tmp/usr/share/man/man1' make[3]: Leaving directory '/build/apophenia-1.0+ds/_build/cmd' make[2]: Leaving directory '/build/apophenia-1.0+ds/_build/cmd' Making install in eg make[2]: Entering directory '/build/apophenia-1.0+ds/_build/eg' make[3]: Entering directory '/build/apophenia-1.0+ds/_build/eg' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/apophenia-1.0+ds/_build/eg' make[2]: Leaving directory '/build/apophenia-1.0+ds/_build/eg' Making install in tests make[2]: Entering directory '/build/apophenia-1.0+ds/_build/tests' make[3]: Entering directory '/build/apophenia-1.0+ds/_build/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/apophenia-1.0+ds/_build/tests' make[2]: Leaving directory '/build/apophenia-1.0+ds/_build/tests' Making install in docs make[2]: Entering directory '/build/apophenia-1.0+ds/_build/docs' make[3]: Entering directory '/build/apophenia-1.0+ds/_build/docs' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/apophenia-1.0+ds/_build/docs' make[2]: Leaving directory '/build/apophenia-1.0+ds/_build/docs' make[1]: Leaving directory '/build/apophenia-1.0+ds/_build' dh_install -O--builddirectory=_build dh_installdocs -O--builddirectory=_build dh_installdocs: warning: Cannot auto-detect main package for apophenia-doc. If the default is wrong, please use --doc-main-package dh_installchangelogs -O--builddirectory=_build dh_installexamples -O--builddirectory=_build dh_installexamples: warning: Cannot auto-detect main package for apophenia-doc. If the default is wrong, please use --doc-main-package dh_installman -O--builddirectory=_build dh_installinit -O--builddirectory=_build dh_installsystemduser -O--builddirectory=_build dh_perl -O--builddirectory=_build dh_link -O--builddirectory=_build dh_strip_nondeterminism -O--builddirectory=_build debian/rules override_dh_compress-indep make[1]: Entering directory '/build/apophenia-1.0+ds' dh_compress -X.pdf -Xexamples make[1]: Leaving directory '/build/apophenia-1.0+ds' dh_compress -O--builddirectory=_build -Napophenia-doc dh_fixperms -O--builddirectory=_build dh_missing -O--builddirectory=_build dh_missing: warning: usr/lib/x86_64-linux-gnu/libapophenia.la exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: apophenia-bin (3), apophenia-doc (0), libapophenia2 (2), libapophenia2-dev (4) * dh_installdocs: apophenia-bin (0), apophenia-doc (1), libapophenia2 (0), libapophenia2-dev (0) * dh_installexamples: apophenia-bin (0), apophenia-doc (49), libapophenia2 (0), libapophenia2-dev (0) * dh_installman: apophenia-bin (3), apophenia-doc (0), libapophenia2 (0), libapophenia2-dev (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. Remember to be careful with paths containing "x86_64-linux-gnu", where you might need to use a wildcard or (assuming compat 13+) e.g. ${DEB_HOST_MULTIARCH} in debian/not-installed to ensure it works on all architectures (see #961104). dh_dwz -O--builddirectory=_build dh_strip -O--builddirectory=_build dh_makeshlibs -O--builddirectory=_build dh_shlibdeps -O--builddirectory=_build dh_installdeb -O--builddirectory=_build dh_gencontrol -O--builddirectory=_build dh_md5sums -O--builddirectory=_build dh_builddeb -O--builddirectory=_build dpkg-deb: building package 'libapophenia2-dbgsym' in '../libapophenia2-dbgsym_1.0+ds-8_amd64.deb'. dpkg-deb: building package 'libapophenia2' in '../libapophenia2_1.0+ds-8_amd64.deb'. dpkg-deb: building package 'libapophenia2-dev' in '../libapophenia2-dev_1.0+ds-8_amd64.deb'. dpkg-deb: building package 'apophenia-bin' in '../apophenia-bin_1.0+ds-8_amd64.deb'. dpkg-deb: building package 'apophenia-bin-dbgsym' in '../apophenia-bin-dbgsym_1.0+ds-8_amd64.deb'. dpkg-deb: building package 'apophenia-doc' in '../apophenia-doc_1.0+ds-8_all.deb'. dpkg-genbuildinfo --build=binary -O../apophenia_1.0+ds-8_amd64.buildinfo dpkg-genchanges --build=binary -O../apophenia_1.0+ds-8_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2228713 and its subdirectories I: Current time: Sun Jun 11 04:57:33 -12 2023 I: pbuilder-time-stamp: 1686502653 Sun Jun 11 16:57:34 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Sun Jun 11 16:57:34 UTC 2023 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Sun Jun 11 17:44:53 UTC 2023 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Sun Jun 11 17:44:54 UTC 2023 I: apophenia_1.0+ds-8_amd64.changes: Format: 1.8 Date: Fri, 16 Aug 2019 15:20:10 +0000 Source: apophenia Binary: apophenia-bin apophenia-bin-dbgsym apophenia-doc libapophenia2 libapophenia2-dbgsym libapophenia2-dev Architecture: amd64 all Version: 1.0+ds-8 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Jerome Benoit Description: apophenia-bin - Apophenia Statistical C Library -- binary package apophenia-doc - Apophenia Statistical C Library -- reference manual libapophenia2 - Apophenia Statistical C Library -- library package libapophenia2-dev - Apophenia Statistical C Library -- development package Closes: 925634 Changes: apophenia (1.0+ds-8) unstable; urgency=medium . * RC fix release (Closes: #925634), implement workaround that works (this looks like a gcc9 compiler issue). * Debianization: - debian/copyright: - Copyright year tuples, refresh; - Format URI, secure; - debian/control: - debhelper, bump to 12; - Standards-Version, bump to 4.4.0 (no change); - Vcs-*, migration to Salsa; - debian/rules: - get-orig-source target, discard; - debian/patches/*: - d/p/upstream-{mysql-8.0,fix-implicit-model-ols_log_likelihood}.patch, introduce; - d/p/debianization-bug-gcc9-XXX.patch, introduce; - debian/source/*: - d/s/lintian-overrides, refresh; - d/s/options, discard; - debian/compat, delete. Checksums-Sha1: 19d42e67007386e70c79b0396d54938b07d33d9c 19640 apophenia-bin-dbgsym_1.0+ds-8_amd64.deb 13aacbdec2d102f9be0376a4877f8614d5f02ecb 33080 apophenia-bin_1.0+ds-8_amd64.deb df92308f1da13c6854ba27a69c90bdd27e2d2499 404188 apophenia-doc_1.0+ds-8_all.deb 1970f743a8d4a2d0fb0224ffa359e1d89afbddc5 10511 apophenia_1.0+ds-8_amd64.buildinfo 0339ac1a9702c0600dde8bd0c7c5749321f2ee80 605448 libapophenia2-dbgsym_1.0+ds-8_amd64.deb a41f4dd6210382d33d806b99f8ff58dac8f8b970 329496 libapophenia2-dev_1.0+ds-8_amd64.deb 4fd2880c8209a17cf3190d686efd33aa365553ee 278700 libapophenia2_1.0+ds-8_amd64.deb Checksums-Sha256: ff59dc9584801e661d7418e411db33cab031e10fbee1091d51c643d26958055d 19640 apophenia-bin-dbgsym_1.0+ds-8_amd64.deb eb119c3369cfde1101ce15a7245ae79f55c14735c772f5204c21d26bb48db107 33080 apophenia-bin_1.0+ds-8_amd64.deb 2593c09adcbce099d3470919e953652dbf9729a8d364dcb5a359c454a0757de8 404188 apophenia-doc_1.0+ds-8_all.deb 8d23d578ede234818ff118f135a9c781d67537f7387d4366c1dac8458ca806d3 10511 apophenia_1.0+ds-8_amd64.buildinfo 860f43f3316683a5c514f0d8c0b193e8fe72782ef12da72e0f13e8203bab7c4a 605448 libapophenia2-dbgsym_1.0+ds-8_amd64.deb 07365398affd910d608bfbb851072ff395fc13aec4a695ec4d529b7b468eb8a3 329496 libapophenia2-dev_1.0+ds-8_amd64.deb ae2e003c937df8805746fcbf51f3bf3e13edab3d8f8f71fa908afe25d45aa196 278700 libapophenia2_1.0+ds-8_amd64.deb Files: 53026d7b9e850c8c505dcec3734174d4 19640 debug optional apophenia-bin-dbgsym_1.0+ds-8_amd64.deb 625a87b131674dcfaee9195a684b8bd9 33080 math optional apophenia-bin_1.0+ds-8_amd64.deb 56400a43e332fff7f8e105e317fcdf7f 404188 doc optional apophenia-doc_1.0+ds-8_all.deb 5b0fb0a0d1d3c11bdbeb5f56538bdc40 10511 math optional apophenia_1.0+ds-8_amd64.buildinfo 734fb65af7e2ba68ec6c2b2e0f787e5e 605448 debug optional libapophenia2-dbgsym_1.0+ds-8_amd64.deb 6ee731673251d1549d87dabd5340b283 329496 libdevel optional libapophenia2-dev_1.0+ds-8_amd64.deb 8a680075b3223c1d992cf83cedd80694 278700 libs optional libapophenia2_1.0+ds-8_amd64.deb Sun Jun 11 17:44:55 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Y5ytnUHg/apophenia_1.0+ds-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Y5ytnUHg/apophenia_1.0+ds-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Y5ytnUHg/apophenia_1.0+ds-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Y5ytnUHg/b1/apophenia_1.0+ds-8_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Y5ytnUHg/b2/apophenia_1.0+ds-8_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.347s) 0.347s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.039s) 0.039s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Sun Jun 11 17:44:56 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Sun Jun 11 17:44:56 UTC 2023 I: apophenia from bookworm built successfully and reproducibly on amd64. Sun Jun 11 17:44:59 UTC 2023 I: Submitting .buildinfo files to external archives: Sun Jun 11 17:44:59 UTC 2023 I: Submitting 12K b1/apophenia_1.0+ds-8_amd64.buildinfo.asc Sun Jun 11 17:45:00 UTC 2023 I: Submitting 12K b2/apophenia_1.0+ds-8_amd64.buildinfo.asc Sun Jun 11 17:45:01 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Jun 11 17:45:01 UTC 2023 I: Done submitting .buildinfo files. Sun Jun 11 17:45:01 UTC 2023 I: Removing signed apophenia_1.0+ds-8_amd64.buildinfo.asc files: removed './b1/apophenia_1.0+ds-8_amd64.buildinfo.asc' removed './b2/apophenia_1.0+ds-8_amd64.buildinfo.asc'