Mon May 15 16:08:34 UTC 2023 I: starting to build abpoa/bookworm/amd64 on jenkins on '2023-05-15 16:08' Mon May 15 16:08:34 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_29/12059/console.log Mon May 15 16:08:34 UTC 2023 I: Downloading source for bookworm/abpoa=1.4.1-3 --2023-05-15 16:08:35-- http://cdn-fastly.deb.debian.org/debian/pool/main/a/abpoa/abpoa_1.4.1-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2217 (2.2K) [text/prs.lines.tag] Saving to: ‘abpoa_1.4.1-3.dsc’ 0K .. 100% 154M=0s 2023-05-15 16:08:35 (154 MB/s) - ‘abpoa_1.4.1-3.dsc’ saved [2217/2217] Mon May 15 16:08:35 UTC 2023 I: abpoa_1.4.1-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: abpoa Binary: abpoa, python3-pyabpoa Architecture: any Version: 1.4.1-3 Maintainer: Debian Med Packaging Team Uploaders: Étienne Mollier Homepage: https://github.com/yangao07/abPOA Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/abpoa Vcs-Git: https://salsa.debian.org/med-team/abpoa.git Testsuite: autopkgtest, autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-python, cython3, graphviz , libsimde-dev, python3-all-dev, zlib1g-dev Package-List: abpoa deb science optional arch=any python3-pyabpoa deb python optional arch=any Checksums-Sha1: d11e785505ae957bbd010d4961d8ed6207cf7e4b 195608 abpoa_1.4.1.orig.tar.gz a3741143676afbfc7622427c9f07087659ad21a6 8544 abpoa_1.4.1-3.debian.tar.xz Checksums-Sha256: b16b58e260026dd7daa75cea46c75e7c418cc1b1c681dd864d37d925157dd677 195608 abpoa_1.4.1.orig.tar.gz 0d7fbd6fcc4049b0af648013f8d791c4d5f8345ffe9b4f7d50b6a942b53171c5 8544 abpoa_1.4.1-3.debian.tar.xz Files: ddf73a1c15032ded89c33b30cf48352b 195608 abpoa_1.4.1.orig.tar.gz f836cf129b68db4b15ccf90a61ffdd58 8544 abpoa_1.4.1-3.debian.tar.xz Dgit: efc778c3ebfa8f38a1a140d80c50e560c6fcbefc debian archive/debian/1.4.1-3 https://git.dgit.debian.org/abpoa -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmLqXO0UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpisw//dOFR6Yf7twB9fn3GsgQxcfYQasUc mZaXDcCxn2iSWPiHsUieMgnK62rMoK0e5ngyI5TRt+cG0iw9Igy+9r3M1GpP9Ul+ 0yYso4DNMjpA0+zuwUpCPg3Oa68WkK9b738ca94C7w9Ic6qN9FWoDcUY8PiR4fJ8 Q6+vk0nXgfAum23ZYkq88h/LmNxOypY3NU7axzD4iKb7TKtrOFyZoKDtHrMNvgAd lv4VU7qZNU6U+5GpgReeTfI4ok3naok1LkAjUbn5kkhugWrn11YqF6W8J3CUvypX xG9gvn1KwCLtcuS3nSTOXG/JggfxVctoWgFFJhCGAQEdj/VyJE6noy+11hSL4oke o9sGNmYfj44TAZErksVzRHy7LS9+0Rzg7MO95Rzh6Q9/HWmUKG5et6kNgombM7yS ptLLucDxbiycXv/0RL8wtVkIAMA44vRN7Jd117PXLpsGFy7t8XxYuVQz6mvp1nYO aPvaqk1w4gKIUqmQR2ajVjo42k67uqLPb76JBFAMHiCw2DpDB5SHafnsQ9ys6y+n VjXZRSPvaJYl/A18YbbUh5Pnd0ITBfFHgqNhun5JTQ/vaCuMGNgwpY1RaZcfWgwL GeMcbWviqH1KAMJQtI9PnmQzu8TZ7O5WZ8AO6BRrNQlrc8Kx71zpql7QpmTa1bMW mlLTZfHXpbx6CnQ= =TIU5 -----END PGP SIGNATURE----- Mon May 15 16:08:35 UTC 2023 I: Checking whether the package is not for us Mon May 15 16:08:35 UTC 2023 I: Starting 1st build on remote node ionos11-amd64.debian.net. Mon May 15 16:08:35 UTC 2023 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Mon May 15 16:12:59 UTC 2023 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 15 04:08:39 -12 2023 I: pbuilder-time-stamp: 1684166919 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [abpoa_1.4.1-3.dsc] I: copying [./abpoa_1.4.1.orig.tar.gz] I: copying [./abpoa_1.4.1-3.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Aug 2 23:33:01 2022 -12 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./abpoa_1.4.1-3.dsc: no acceptable signature found dpkg-source: info: extracting abpoa in abpoa-1.4.1 dpkg-source: info: unpacking abpoa_1.4.1.orig.tar.gz dpkg-source: info: unpacking abpoa_1.4.1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian-simde.patch dpkg-source: info: applying buildflags.patch dpkg-source: info: applying typos.patch dpkg-source: info: applying baseline.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1936544/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='6dda06c3265547a48b22a815385f9689' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1936544' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.FuxPfXq0/pbuilderrc_KKQB --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.FuxPfXq0/b1 --logfile b1/build.log abpoa_1.4.1-3.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 5.10.0-23-amd64 #1 SMP Debian 5.10.179-1 (2023-05-12) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/1936544/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, cython3, graphviz, libsimde-dev, python3-all-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on graphviz; however: Package graphviz is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} intltool-debian{a} libabsl20220623{a} libann0{a} libaom3{a} libarchive-zip-perl{a} libavif15{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcdt5{a} libcgraph6{a} libdatrie1{a} libdav1d6{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libglib2.0-0{a} libgraphite2-3{a} libgts-0.7-5{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libheif1{a} libice6{a} libicu72{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblab-gamut1{a} liblerc4{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libnuma1{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpathplan4{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} librav1e0{a} libreadline8{a} libsimde-dev{a} libsm6{a} libsub-override-perl{a} libsvtav1enc1{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx265-199{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6{a} libyuv0{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-liberation2 javascript-common libarchive-cpio-perl libglib2.0-data libgts-bin libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 124 newly installed, 0 to remove and 0 not upgraded. Need to get 57.6 MB of archives. After unpacking 224 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 cython3 amd64 0.29.32-2+b1 [1302 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130 [104 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5 [399 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 fontconfig amd64 2.14.1-4 [449 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libcdt5 amd64 2.42.2-7+b3 [39.8 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libcgraph6 amd64 2.42.2-7+b3 [63.2 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libaom3 amd64 3.6.0-1 [1851 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libdav1d6 amd64 1.0.0-2 [495 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libabsl20220623 amd64 20220623.1-1 [391 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 libgav1-1 amd64 0.18.0-1+b1 [332 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 librav1e0 amd64 0.5.1-6 [763 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libsvtav1enc1 amd64 1.4.1+dfsg-1 [2121 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libyuv0 amd64 0.0~git20230123.b2528b0-1 [168 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libavif15 amd64 0.11.1-1 [93.8 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 libde265-0 amd64 1.0.11-1 [185 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 libnuma1 amd64 2.0.16-1 [21.0 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 libx265-199 amd64 3.5-2+b1 [1150 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 libheif1 amd64 1.15.1-1 [215 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.1 [285 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-5 [316 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2 [292 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2 [759 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 libxpm4 amd64 1:3.5.12-1.1 [48.4 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libgd3 amd64 2.3.3-9 [124 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-5+b1 [160 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 88 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get: 89 http://deb.debian.org/debian bookworm/main amd64 libcairo2 amd64 1.16.0-7 [575 kB] Get: 90 http://deb.debian.org/debian bookworm/main amd64 libltdl7 amd64 2.4.7-5 [393 kB] Get: 91 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get: 94 http://deb.debian.org/debian bookworm/main amd64 libthai-data all 0.1.29-1 [176 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 libdatrie1 amd64 0.2.13-2+b1 [43.3 kB] Get: 96 http://deb.debian.org/debian bookworm/main amd64 libthai0 amd64 0.1.29-1 [57.5 kB] Get: 97 http://deb.debian.org/debian bookworm/main amd64 libpango-1.0-0 amd64 1.50.12+ds-1 [212 kB] Get: 98 http://deb.debian.org/debian bookworm/main amd64 libpangoft2-1.0-0 amd64 1.50.12+ds-1 [47.4 kB] Get: 99 http://deb.debian.org/debian bookworm/main amd64 libpangocairo-1.0-0 amd64 1.50.12+ds-1 [34.2 kB] Get: 100 http://deb.debian.org/debian bookworm/main amd64 libpathplan4 amd64 2.42.2-7+b3 [42.2 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 libgvc6 amd64 2.42.2-7+b3 [678 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 libgvpr2 amd64 2.42.2-7+b3 [189 kB] Get: 103 http://deb.debian.org/debian bookworm/main amd64 liblab-gamut1 amd64 2.42.2-7+b3 [198 kB] Get: 104 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 105 http://deb.debian.org/debian bookworm/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 107 http://deb.debian.org/debian bookworm/main amd64 libxt6 amd64 1:1.2.1-1.1 [186 kB] Get: 108 http://deb.debian.org/debian bookworm/main amd64 libxmu6 amd64 2:1.1.3-3 [60.1 kB] Get: 109 http://deb.debian.org/debian bookworm/main amd64 libxaw7 amd64 2:1.0.14-1 [201 kB] Get: 110 http://deb.debian.org/debian bookworm/main amd64 graphviz amd64 2.42.2-7+b3 [611 kB] Get: 111 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get: 112 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 113 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 114 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 115 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get: 116 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 117 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6 [4738 kB] Get: 118 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get: 119 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get: 120 http://deb.debian.org/debian bookworm/main amd64 libsimde-dev all 0.7.4~rc2-2 [377 kB] Get: 121 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get: 122 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6 [615 kB] Get: 123 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get: 124 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Fetched 57.6 MB in 2s (34.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19912 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../3-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_amd64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20346 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../003-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../006-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../008-bsdextrautils_2.38.1-5+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../009-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../010-man-db_2.11.2-2_amd64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../011-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../012-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../013-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../014-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../015-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package cython3. Preparing to unpack .../016-cython3_0.29.32-2+b1_amd64.deb ... Unpacking cython3 (0.29.32-2+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../017-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../018-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../019-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../020-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../021-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../022-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../023-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../024-libelf1_0.188-2.1_amd64.deb ... Unpacking libelf1:amd64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../025-dwz_0.15-1_amd64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../026-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../027-libxml2_2.9.14+dfsg-1.2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../028-gettext_0.21-12_amd64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../029-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../030-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../031-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../032-python3-lib2to3_3.11.2-3_all.deb ... Unpacking python3-lib2to3 (3.11.2-3) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../033-python3-distutils_3.11.2-3_all.deb ... Unpacking python3-distutils (3.11.2-3) ... Selecting previously unselected package dh-python. Preparing to unpack .../034-dh-python_5.20230130_all.deb ... Unpacking dh-python (5.20230130) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../035-libbrotli1_1.0.9-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b6) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../036-libpng16-16_1.6.39-2_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.39-2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../037-libfreetype6_2.12.1+dfsg-5_amd64.deb ... Unpacking libfreetype6:amd64 (2.12.1+dfsg-5) ... Selecting previously unselected package fonts-dejavu-core. 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Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libxpm4:amd64 (1:3.5.12-1.1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up libpango-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libheif1:amd64 (1.15.1-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.16.0-7) ... Setting up libgd3:amd64 (2.3.3-9) ... Setting up libxt6:amd64 (1:1.2.1-1.1) ... Setting up libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libxmu6:amd64 (2:1.1.3-3) ... Setting up libpython3.11:amd64 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up libxaw7:amd64 (2:1.0.14-1) ... Setting up libpython3.11-dev:amd64 (3.11.2-6) ... Setting up libgvc6 (2.42.2-7+b3) ... Setting up cython3 (0.29.32-2+b1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130) ... Setting up graphviz (2.42.2-7+b3) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up python3.11-dev (3.11.2-6) ... Setting up python3-all (3.11.2-1+b1) ... Setting up libpython3-all-dev:amd64 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-all-dev (3.11.2-1+b1) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/abpoa-1.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../abpoa_1.4.1-3_source.changes dpkg-buildpackage: info: source package abpoa dpkg-buildpackage: info: source version 1.4.1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with=python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py clean /build/abpoa-1.4.1/setup.py:6: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup /usr/lib/python3.11/distutils/dist.py:274: UserWarning: Unknown distribution option: 'long_description_content_type' warnings.warn(msg) /usr/lib/python3.11/distutils/dist.py:274: UserWarning: Unknown distribution option: 'install_requires' warnings.warn(msg) running clean removing '/build/abpoa-1.4.1/.pybuild/cpython3_3.11_pyabpoa/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with=python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config /build/abpoa-1.4.1/setup.py:6: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup /usr/lib/python3.11/distutils/dist.py:274: UserWarning: Unknown distribution option: 'long_description_content_type' warnings.warn(msg) /usr/lib/python3.11/distutils/dist.py:274: UserWarning: Unknown distribution option: 'install_requires' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build /build/abpoa-1.4.1/setup.py:6: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup /usr/lib/python3.11/distutils/dist.py:274: UserWarning: Unknown distribution option: 'long_description_content_type' warnings.warn(msg) /usr/lib/python3.11/distutils/dist.py:274: UserWarning: Unknown distribution option: 'install_requires' warnings.warn(msg) running build running build_ext cythoning python/pyabpoa.pyx to python/pyabpoa.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/abpoa-1.4.1/python/pyabpoa.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'pyabpoa' extension creating build creating build/temp.linux-x86_64-3.11 creating build/temp.linux-x86_64-3.11/python creating build/temp.linux-x86_64-3.11/src x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.11 -c python/pyabpoa.c -o build/temp.linux-x86_64-3.11/python/pyabpoa.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.11 -c src/abpoa_align.c -o build/temp.linux-x86_64-3.11/src/abpoa_align.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa_align.c:6: src/abpoa_align.h: In function ‘abpoa_push_cigar’: src/abpoa_align.h:56:103: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if (*n_cigar == 0 || (op != ABPOA_CINS && op != ABPOA_CSOFT_CLIP && op != ABPOA_CHARD_CLIP) || op != (cigar[(*n_cigar)-1] & 0xf)) { | ^~ src/abpoa_align.c: In function ‘abpoa_msa’: src/abpoa_align.c:435:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 435 | for (i = 0; i < n_seq; ++i) free(weights[i]); free(weights); | ^~~ src/abpoa_align.c:435:51: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 435 | for (i = 0; i < n_seq; ++i) free(weights[i]); free(weights); | ^~~~ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.11 -c src/abpoa_graph.c -o build/temp.linux-x86_64-3.11/src/abpoa_graph.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa_graph.c:4: src/abpoa_align.h: In function ‘abpoa_push_cigar’: src/abpoa_align.h:56:103: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if (*n_cigar == 0 || (op != ABPOA_CINS && op != ABPOA_CSOFT_CLIP && op != ABPOA_CHARD_CLIP) || op != (cigar[(*n_cigar)-1] & 0xf)) { | ^~ src/abpoa_graph.c: In function ‘abpoa_free_cons’: src/abpoa_graph.c:145:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 145 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_node_ids[i]); free(abc->cons_node_ids); | ^~~ src/abpoa_graph.c:145:76: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 145 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_node_ids[i]); free(abc->cons_node_ids); | ^~~~ src/abpoa_graph.c:148:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 148 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_base[i]); free(abc->cons_base); | ^~~ src/abpoa_graph.c:148:72: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 148 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_base[i]); free(abc->cons_base); | ^~~~ src/abpoa_graph.c:151:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 151 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_cov[i]); free(abc->cons_cov); | ^~~ src/abpoa_graph.c:151:71: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 151 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_cov[i]); free(abc->cons_cov); | ^~~~ src/abpoa_graph.c:154:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 154 | for (i = 0; i < abc->n_cons; ++i) free(abc->clu_read_ids[i]); free(abc->clu_read_ids); | ^~~ src/abpoa_graph.c:154:75: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 154 | for (i = 0; i < abc->n_cons; ++i) free(abc->clu_read_ids[i]); free(abc->clu_read_ids); | ^~~~ src/abpoa_graph.c:157:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 157 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_phred_score[i]); free(abc->cons_phred_score); | ^~~ src/abpoa_graph.c:157:79: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 157 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_phred_score[i]); free(abc->cons_phred_score); | ^~~~ src/abpoa_graph.c: In function ‘abpoa_reset’: src/abpoa_graph.c:721:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 721 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_node_ids[i]); free(abc->cons_node_ids); | ^~~ src/abpoa_graph.c:721:76: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 721 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_node_ids[i]); free(abc->cons_node_ids); | ^~~~ src/abpoa_graph.c:724:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 724 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_base[i]); free(abc->cons_base); | ^~~ src/abpoa_graph.c:724:72: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 724 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_base[i]); free(abc->cons_base); | ^~~~ src/abpoa_graph.c:727:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 727 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_cov[i]); free(abc->cons_cov); | ^~~ src/abpoa_graph.c:727:71: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 727 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_cov[i]); free(abc->cons_cov); | ^~~~ src/abpoa_graph.c:730:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 730 | for (i = 0; i < abc->n_cons; ++i) free(abc->clu_read_ids[i]); free(abc->clu_read_ids); | ^~~ src/abpoa_graph.c:730:75: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 730 | for (i = 0; i < abc->n_cons; ++i) free(abc->clu_read_ids[i]); free(abc->clu_read_ids); | ^~~~ src/abpoa_graph.c:733:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 733 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_phred_score[i]); free(abc->cons_phred_score); | ^~~ src/abpoa_graph.c:733:79: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 733 | for (i = 0; i < abc->n_cons; ++i) free(abc->cons_phred_score[i]); free(abc->cons_phred_score); | ^~~~ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.11 -c src/abpoa_output.c -o build/temp.linux-x86_64-3.11/src/abpoa_output.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_output.c: In function ‘abpoa_multip_heaviest_bundling’: src/abpoa_output.c:492:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 492 | for (i = 0; i < n_clu; ++i) free(max_out_id[i]); free(max_out_id); | ^~~ src/abpoa_output.c:492:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 492 | for (i = 0; i < n_clu; ++i) free(max_out_id[i]); free(max_out_id); | ^~~~ src/abpoa_output.c: In function ‘abpoa_collect_clu_hap_read_ids’: src/abpoa_output.c:854:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 854 | for (i = 0; i < m_clu; ++i) free(clu_haps[i]); free(clu_haps); free(clu_size); | ^~~ src/abpoa_output.c:854:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 854 | for (i = 0; i < m_clu; ++i) free(clu_haps[i]); free(clu_haps); free(clu_size); | ^~~~ src/abpoa_output.c: In function ‘abpoa_generate_consensus’: src/abpoa_output.c:916:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 916 | for (i = 0; i < m_clu; ++i) free(clu_read_ids[i]); free(clu_read_ids); | ^~~ src/abpoa_output.c:916:60: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 916 | for (i = 0; i < m_clu; ++i) free(clu_read_ids[i]); free(clu_read_ids); | ^~~~ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.11 -c src/abpoa_plot.c -o build/temp.linux-x86_64-3.11/src/abpoa_plot.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_plot.c: In function ‘abpoa_dump_pog’: src/abpoa_plot.c:111:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 111 | for (i = 0; i < abg->node_n; ++i) free(node_label[i]); free(node_label); | ^~~ src/abpoa_plot.c:111:60: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 111 | for (i = 0; i < abg->node_n; ++i) free(node_label[i]); free(node_label); | ^~~~ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.11 -c src/abpoa_seed.c -o build/temp.linux-x86_64-3.11/src/abpoa_seed.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seed.c: In function ‘abpoa_dp_chaining_of_local_chains’: src/abpoa_seed.c:396:44: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 396 | if ((local_chains[st].x) >> 63 != istrand) ++st; | ^~ src/abpoa_seed.c: In function ‘abpoa_dp_chaining’: src/abpoa_seed.c:499:30: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 499 | if ((st_a >> 63) != i_tstrand || (int)((st_a >> 32) & 0x7fffffff) + max_dis < i_tpos) ++st; | ^~ src/abpoa_seed.c: In function ‘collect_anchors1’: src/abpoa_seed.c:338:34: warning: ‘j’ may be used uninitialized [-Wmaybe-uninitialized] 338 | xi = mm.a[i].x, xj = mm.a[j].x; | ^ src/abpoa_seed.c:332:12: note: ‘j’ was declared here 332 | int i, j, _i, _j; uint64_t xi, xj, _xi, _xj, _yi, _yj, a; | ^ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.11 -c src/abpoa_seq.c -o build/temp.linux-x86_64-3.11/src/abpoa_seq.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa_seq.c:5: src/abpoa_align.h: In function ‘abpoa_push_cigar’: src/abpoa_align.h:56:103: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if (*n_cigar == 0 || (op != ABPOA_CINS && op != ABPOA_CSOFT_CLIP && op != ABPOA_CHARD_CLIP) || op != (cigar[(*n_cigar)-1] & 0xf)) { | ^~ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.11 -c src/kalloc.c -o build/temp.linux-x86_64-3.11/src/kalloc.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.11 -c src/kstring.c -o build/temp.linux-x86_64-3.11/src/kstring.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kstring.c: In function ‘kvsprintf’: src/kstring.c:15:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 15 | if (l + 1 > s->m - s->l) { | ^ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.11 -c src/simd_abpoa_align.c -o build/temp.linux-x86_64-3.11/src/simd_abpoa_align.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/simd_abpoa_align.c:4: src/abpoa_align.h: In function ‘abpoa_push_cigar’: src/abpoa_align.h:56:103: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if (*n_cigar == 0 || (op != ABPOA_CINS && op != ABPOA_CSOFT_CLIP && op != ABPOA_CHARD_CLIP) || op != (cigar[(*n_cigar)-1] & 0xf)) { | ^~ src/simd_abpoa_align.c: In function ‘abpoa_cg_global_align_sequence_to_graph_core’: src/simd_abpoa_align.c:1587:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1587 | for (i = 1; i < pn; ++i) SUF_MIN[i] = SIMDShiftLeft(SUF_MIN[i-1], SIMDShiftOneNi32); SUF_MIN[pn] = SUF_MIN[pn-1]; | ^~~ src/simd_abpoa_align.c:1587:90: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1587 | for (i = 1; i < pn; ++i) SUF_MIN[i] = SIMDShiftLeft(SUF_MIN[i-1], SIMDShiftOneNi32); SUF_MIN[pn] = SUF_MIN[pn-1]; | ^~~~~~~ src/simd_abpoa_align.c: In function ‘simd_abpoa_align_sequence_to_subgraph’: src/simd_abpoa_align.c:460:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 460 | for (i = 1; i < pn; ++i) \ | ^~~ src/simd_abpoa_align.c:539:5: note: in expansion of macro ‘simd_abpoa_var’ 539 | simd_abpoa_var(score_t, sp, SIMDSetOne, SIMDShiftOneN); \ | ^~~~~~~~~~~~~~ src/simd_abpoa_align.c:1073:5: note: in expansion of macro ‘simd_abpoa_lg_var’ 1073 | simd_abpoa_lg_var(score_t, sp, SIMDSetOne, SIMDShiftOneN, SIMDAdd); \ | ^~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:461:66: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 461 | SUF_MIN[i] = SIMDShiftLeft(SUF_MIN[i-1], SIMDShiftOneN); SUF_MIN[pn] = SUF_MIN[pn-1]; \ | ^~~~~~~ src/simd_abpoa_align.c:539:5: note: in expansion of macro ‘simd_abpoa_var’ 539 | simd_abpoa_var(score_t, sp, SIMDSetOne, SIMDShiftOneN); \ | ^~~~~~~~~~~~~~ src/simd_abpoa_align.c:1073:5: note: in expansion of macro ‘simd_abpoa_lg_var’ 1073 | simd_abpoa_lg_var(score_t, sp, SIMDSetOne, SIMDShiftOneN, SIMDAdd); \ | ^~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:534:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 534 | for (i = 0; i < matrix_row_n; ++i) free(pre_index[i]); free(pre_index); free(pre_n); \ | ^~~ src/simd_abpoa_align.c:1097:5: note: in expansion of macro ‘simd_abpoa_free_var’ 1097 | simd_abpoa_free_var; SIMDFree(GAP_E1S); \ | ^~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:534:60: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 534 | for (i = 0; i < matrix_row_n; ++i) free(pre_index[i]); free(pre_index); free(pre_n); \ | ^~~~ src/simd_abpoa_align.c:1097:5: note: in expansion of macro ‘simd_abpoa_free_var’ 1097 | simd_abpoa_free_var; SIMDFree(GAP_E1S); \ | ^~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:460:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 460 | for (i = 1; i < pn; ++i) \ | ^~~ src/simd_abpoa_align.c:544:5: note: in expansion of macro ‘simd_abpoa_var’ 544 | simd_abpoa_var(score_t, sp, SIMDSetOne, SIMDShiftOneN); \ | ^~~~~~~~~~~~~~ src/simd_abpoa_align.c:1103:5: note: in expansion of macro ‘simd_abpoa_ag_var’ 1103 | simd_abpoa_ag_var(score_t, sp, SIMDSetOne, SIMDShiftOneN, SIMDAdd); \ | ^~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:461:66: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 461 | SUF_MIN[i] = SIMDShiftLeft(SUF_MIN[i-1], SIMDShiftOneN); SUF_MIN[pn] = SUF_MIN[pn-1]; \ | ^~~~~~~ src/simd_abpoa_align.c:544:5: note: in expansion of macro ‘simd_abpoa_var’ 544 | simd_abpoa_var(score_t, sp, SIMDSetOne, SIMDShiftOneN); \ | ^~~~~~~~~~~~~~ src/simd_abpoa_align.c:1103:5: note: in expansion of macro ‘simd_abpoa_ag_var’ 1103 | simd_abpoa_ag_var(score_t, sp, SIMDSetOne, SIMDShiftOneN, SIMDAdd); \ | ^~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:534:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 534 | for (i = 0; i < matrix_row_n; ++i) free(pre_index[i]); free(pre_index); free(pre_n); \ | ^~~ src/simd_abpoa_align.c:1126:5: note: in expansion of macro ‘simd_abpoa_free_var’ 1126 | simd_abpoa_free_var; SIMDFree(GAP_E1S); \ | ^~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:534:60: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 534 | for (i = 0; i < matrix_row_n; ++i) free(pre_index[i]); free(pre_index); free(pre_n); \ | ^~~~ src/simd_abpoa_align.c:1126:5: note: in expansion of macro ‘simd_abpoa_free_var’ 1126 | simd_abpoa_free_var; SIMDFree(GAP_E1S); \ | ^~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:460:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 460 | for (i = 1; i < pn; ++i) \ | ^~~ src/simd_abpoa_align.c:549:5: note: in expansion of macro ‘simd_abpoa_var’ 549 | simd_abpoa_var(score_t, sp, SIMDSetOne, SIMDShiftOneN); \ | ^~~~~~~~~~~~~~ src/simd_abpoa_align.c:1132:5: note: in expansion of macro ‘simd_abpoa_cg_var’ 1132 | simd_abpoa_cg_var(score_t, sp, SIMDSetOne, SIMDShiftOneN, SIMDAdd); \ | ^~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1694:13: note: in expansion of macro ‘simd_abpoa_cg_align_sequence_to_graph_core’ 1694 | simd_abpoa_cg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:461:66: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 461 | SUF_MIN[i] = SIMDShiftLeft(SUF_MIN[i-1], SIMDShiftOneN); SUF_MIN[pn] = SUF_MIN[pn-1]; \ | ^~~~~~~ src/simd_abpoa_align.c:549:5: note: in expansion of macro ‘simd_abpoa_var’ 549 | simd_abpoa_var(score_t, sp, SIMDSetOne, SIMDShiftOneN); \ | ^~~~~~~~~~~~~~ src/simd_abpoa_align.c:1132:5: note: in expansion of macro ‘simd_abpoa_cg_var’ 1132 | simd_abpoa_cg_var(score_t, sp, SIMDSetOne, SIMDShiftOneN, SIMDAdd); \ | ^~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1694:13: note: in expansion of macro ‘simd_abpoa_cg_align_sequence_to_graph_core’ 1694 | simd_abpoa_cg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:534:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 534 | for (i = 0; i < matrix_row_n; ++i) free(pre_index[i]); free(pre_index); free(pre_n); \ | ^~~ src/simd_abpoa_align.c:1156:5: note: in expansion of macro ‘simd_abpoa_free_var’ 1156 | simd_abpoa_free_var; SIMDFree(GAP_E1S); SIMDFree(GAP_E2S); \ | ^~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1694:13: note: in expansion of macro ‘simd_abpoa_cg_align_sequence_to_graph_core’ 1694 | simd_abpoa_cg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:534:60: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 534 | for (i = 0; i < matrix_row_n; ++i) free(pre_index[i]); free(pre_index); free(pre_n); \ | ^~~~ src/simd_abpoa_align.c:1156:5: note: in expansion of macro ‘simd_abpoa_free_var’ 1156 | simd_abpoa_free_var; SIMDFree(GAP_E1S); SIMDFree(GAP_E2S); \ | ^~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1694:13: note: in expansion of macro ‘simd_abpoa_cg_align_sequence_to_graph_core’ 1694 | simd_abpoa_cg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:460:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 460 | for (i = 1; i < pn; ++i) \ | ^~~ src/simd_abpoa_align.c:539:5: note: in expansion of macro ‘simd_abpoa_var’ 539 | simd_abpoa_var(score_t, sp, SIMDSetOne, SIMDShiftOneN); \ | ^~~~~~~~~~~~~~ src/simd_abpoa_align.c:1073:5: note: in expansion of macro ‘simd_abpoa_lg_var’ 1073 | simd_abpoa_lg_var(score_t, sp, SIMDSetOne, SIMDShiftOneN, SIMDAdd); \ | ^~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1699:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1699 | simd_abpoa_lg_align_sequence_to_graph_core(int32_t, _simd_p32, SIMDSetOnei32, SIMDMaxi32, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:461:66: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 461 | SUF_MIN[i] = SIMDShiftLeft(SUF_MIN[i-1], SIMDShiftOneN); SUF_MIN[pn] = SUF_MIN[pn-1]; \ | ^~~~~~~ src/simd_abpoa_align.c:539:5: note: in expansion of macro ‘simd_abpoa_var’ 539 | simd_abpoa_var(score_t, sp, SIMDSetOne, SIMDShiftOneN); \ | ^~~~~~~~~~~~~~ src/simd_abpoa_align.c:1073:5: note: in expansion of macro ‘simd_abpoa_lg_var’ 1073 | simd_abpoa_lg_var(score_t, sp, SIMDSetOne, SIMDShiftOneN, SIMDAdd); \ | ^~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1699:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1699 | simd_abpoa_lg_align_sequence_to_graph_core(int32_t, _simd_p32, SIMDSetOnei32, SIMDMaxi32, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:534:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 534 | for (i = 0; i < matrix_row_n; ++i) free(pre_index[i]); free(pre_index); free(pre_n); \ | ^~~ src/simd_abpoa_align.c:1097:5: note: in expansion of macro ‘simd_abpoa_free_var’ 1097 | simd_abpoa_free_var; SIMDFree(GAP_E1S); \ | ^~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1699:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1699 | simd_abpoa_lg_align_sequence_to_graph_core(int32_t, _simd_p32, SIMDSetOnei32, SIMDMaxi32, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:534:60: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 534 | for (i = 0; i < matrix_row_n; ++i) free(pre_index[i]); free(pre_index); free(pre_n); \ | ^~~~ src/simd_abpoa_align.c:1097:5: note: in expansion of macro ‘simd_abpoa_free_var’ 1097 | simd_abpoa_free_var; SIMDFree(GAP_E1S); \ | ^~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1699:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1699 | simd_abpoa_lg_align_sequence_to_graph_core(int32_t, _simd_p32, SIMDSetOnei32, SIMDMaxi32, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:460:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 460 | for (i = 1; i < pn; ++i) \ | ^~~ src/simd_abpoa_align.c:544:5: note: in expansion of macro ‘simd_abpoa_var’ 544 | simd_abpoa_var(score_t, sp, SIMDSetOne, SIMDShiftOneN); \ | ^~~~~~~~~~~~~~ src/simd_abpoa_align.c:1103:5: note: in expansion of macro ‘simd_abpoa_ag_var’ 1103 | simd_abpoa_ag_var(score_t, sp, SIMDSetOne, SIMDShiftOneN, SIMDAdd); \ | ^~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1702:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1702 | simd_abpoa_ag_align_sequence_to_graph_core(int32_t, _simd_p32, SIMDSetOnei32, SIMDMaxi32, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:461:66: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 461 | SUF_MIN[i] = SIMDShiftLeft(SUF_MIN[i-1], SIMDShiftOneN); SUF_MIN[pn] = SUF_MIN[pn-1]; \ | ^~~~~~~ src/simd_abpoa_align.c:544:5: note: in expansion of macro ‘simd_abpoa_var’ 544 | simd_abpoa_var(score_t, sp, SIMDSetOne, SIMDShiftOneN); \ | ^~~~~~~~~~~~~~ src/simd_abpoa_align.c:1103:5: note: in expansion of macro ‘simd_abpoa_ag_var’ 1103 | simd_abpoa_ag_var(score_t, sp, SIMDSetOne, SIMDShiftOneN, SIMDAdd); \ | ^~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1702:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1702 | simd_abpoa_ag_align_sequence_to_graph_core(int32_t, _simd_p32, SIMDSetOnei32, SIMDMaxi32, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:534:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 534 | for (i = 0; i < matrix_row_n; ++i) free(pre_index[i]); free(pre_index); free(pre_n); \ | ^~~ src/simd_abpoa_align.c:1126:5: note: in expansion of macro ‘simd_abpoa_free_var’ 1126 | simd_abpoa_free_var; SIMDFree(GAP_E1S); \ | ^~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1702:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1702 | simd_abpoa_ag_align_sequence_to_graph_core(int32_t, _simd_p32, SIMDSetOnei32, SIMDMaxi32, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:534:60: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 534 | for (i = 0; i < matrix_row_n; ++i) free(pre_index[i]); free(pre_index); free(pre_n); \ | ^~~~ src/simd_abpoa_align.c:1126:5: note: in expansion of macro ‘simd_abpoa_free_var’ 1126 | simd_abpoa_free_var; SIMDFree(GAP_E1S); \ | ^~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1702:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1702 | simd_abpoa_ag_align_sequence_to_graph_core(int32_t, _simd_p32, SIMDSetOnei32, SIMDMaxi32, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:460:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 460 | for (i = 1; i < pn; ++i) \ | ^~~ src/simd_abpoa_align.c:549:5: note: in expansion of macro ‘simd_abpoa_var’ 549 | simd_abpoa_var(score_t, sp, SIMDSetOne, SIMDShiftOneN); \ | ^~~~~~~~~~~~~~ src/simd_abpoa_align.c:1132:5: note: in expansion of macro ‘simd_abpoa_cg_var’ 1132 | simd_abpoa_cg_var(score_t, sp, SIMDSetOne, SIMDShiftOneN, SIMDAdd); \ | ^~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1705:13: note: in expansion of macro ‘simd_abpoa_cg_align_sequence_to_graph_core’ 1705 | simd_abpoa_cg_align_sequence_to_graph_core(int32_t, _simd_p32, SIMDSetOnei32, SIMDMaxi32, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:461:66: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 461 | SUF_MIN[i] = SIMDShiftLeft(SUF_MIN[i-1], SIMDShiftOneN); SUF_MIN[pn] = SUF_MIN[pn-1]; \ | ^~~~~~~ src/simd_abpoa_align.c:549:5: note: in expansion of macro ‘simd_abpoa_var’ 549 | simd_abpoa_var(score_t, sp, SIMDSetOne, SIMDShiftOneN); \ | ^~~~~~~~~~~~~~ src/simd_abpoa_align.c:1132:5: note: in expansion of macro ‘simd_abpoa_cg_var’ 1132 | simd_abpoa_cg_var(score_t, sp, SIMDSetOne, SIMDShiftOneN, SIMDAdd); \ | ^~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1705:13: note: in expansion of macro ‘simd_abpoa_cg_align_sequence_to_graph_core’ 1705 | simd_abpoa_cg_align_sequence_to_graph_core(int32_t, _simd_p32, SIMDSetOnei32, SIMDMaxi32, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:534:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 534 | for (i = 0; i < matrix_row_n; ++i) free(pre_index[i]); free(pre_index); free(pre_n); \ | ^~~ src/simd_abpoa_align.c:1156:5: note: in expansion of macro ‘simd_abpoa_free_var’ 1156 | simd_abpoa_free_var; SIMDFree(GAP_E1S); SIMDFree(GAP_E2S); \ | ^~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1705:13: note: in expansion of macro ‘simd_abpoa_cg_align_sequence_to_graph_core’ 1705 | simd_abpoa_cg_align_sequence_to_graph_core(int32_t, _simd_p32, SIMDSetOnei32, SIMDMaxi32, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:534:60: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 534 | for (i = 0; i < matrix_row_n; ++i) free(pre_index[i]); free(pre_index); free(pre_n); \ | ^~~~ src/simd_abpoa_align.c:1156:5: note: in expansion of macro ‘simd_abpoa_free_var’ 1156 | simd_abpoa_free_var; SIMDFree(GAP_E1S); SIMDFree(GAP_E2S); \ | ^~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1705:13: note: in expansion of macro ‘simd_abpoa_cg_align_sequence_to_graph_core’ 1705 | simd_abpoa_cg_align_sequence_to_graph_core(int32_t, _simd_p32, SIMDSetOnei32, SIMDMaxi32, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.11 -c src/simd_check.c -o build/temp.linux-x86_64-3.11/src/simd_check.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.11 -c src/utils.c -o build/temp.linux-x86_64-3.11/src/utils.o -O3 -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES build/temp.linux-x86_64-3.11/python/pyabpoa.o build/temp.linux-x86_64-3.11/src/abpoa_align.o build/temp.linux-x86_64-3.11/src/abpoa_graph.o build/temp.linux-x86_64-3.11/src/abpoa_output.o build/temp.linux-x86_64-3.11/src/abpoa_plot.o build/temp.linux-x86_64-3.11/src/abpoa_seed.o build/temp.linux-x86_64-3.11/src/abpoa_seq.o build/temp.linux-x86_64-3.11/src/kalloc.o build/temp.linux-x86_64-3.11/src/kstring.o build/temp.linux-x86_64-3.11/src/simd_abpoa_align.o build/temp.linux-x86_64-3.11/src/simd_check.o build/temp.linux-x86_64-3.11/src/utils.o -lz -lm -lpthread -o /build/abpoa-1.4.1/.pybuild/cpython3_3.11_pyabpoa/build/pyabpoa.cpython-311-x86_64-linux-gnu.so debian/rules execute_after_dh_auto_build make[1]: Entering directory '/build/abpoa-1.4.1' set -e \ ; for SIMDE in avx2 avx sse4.1 ssse3 sse3 \ ; do CFLAGS="-g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -m${SIMDE}" \ CXXFLAGS="-g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -m${SIMDE}" \ dh_auto_build --buildsystem=makefile -- all \ ; mv -v bin/abpoa bin/abpoa.${SIMDE} \ ; dh_auto_clean --buildsystem=makefile -- clean \ ; done make -j15 "INSTALL=install --strip-program=true" all make[2]: Entering directory '/build/abpoa-1.4.1' cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/abpoa.c -o src/abpoa.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_align.c -I./include -o src/abpoa_align.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_graph.c -I./include -o src/abpoa_graph.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_plot.c -I./include -o src/abpoa_plot.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seed.c -I./include -o src/abpoa_seed.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seq.c -I./include -o src/abpoa_seq.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_output.c -I./include -o src/abpoa_output.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kalloc.c -I./include -o src/kalloc.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kstring.c -I./include -o src/kstring.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/simd_abpoa_align.c -o src/simd_abpoa_align.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/simd_check.c -o src/simd_check.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/utils.c -I./include -o src/utils.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C src/abpoa_seed.c: In function ‘collect_anchors1’: src/abpoa_seed.c:338:34: warning: ‘j’ may be used uninitialized [-Wmaybe-uninitialized] 338 | xi = mm.a[i].x, xj = mm.a[j].x; | ^ src/abpoa_seed.c:332:12: note: ‘j’ was declared here 332 | int i, j, _i, _j; uint64_t xi, xj, _xi, _xj, _yi, _yj, a; | ^ src/simd_abpoa_align.c: In function ‘simd_abpoa_align_sequence_to_subgraph’: src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ if [ ! -d ./lib ]; then mkdir ./lib; fi ar -csr lib/libabpoa.a ./src/abpoa_align.o ./src/abpoa_graph.o ./src/abpoa_plot.o ./src/abpoa_seed.o ./src/abpoa_seq.o ./src/abpoa_output.o ./src/kalloc.o ./src/kstring.o ./src/simd_abpoa_align.o ./src/simd_check.o ./src/utils.o if [ ! -d ./bin ]; then mkdir ./bin; fi cc -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa.o -I./include -L./lib -labpoa -lm -lz -lpthread -o bin/abpoa make[2]: Leaving directory '/build/abpoa-1.4.1' renamed 'bin/abpoa' -> 'bin/abpoa.avx2' make -j15 clean clean make[2]: Entering directory '/build/abpoa-1.4.1' rm -f ./src/*.[oa] ./lib/*.[oa] ./bin/abpoa make[2]: 'clean' is up to date. make[2]: Leaving directory '/build/abpoa-1.4.1' make -j15 "INSTALL=install --strip-program=true" all make[2]: Entering directory '/build/abpoa-1.4.1' cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/abpoa.c -o src/abpoa.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_align.c -I./include -o src/abpoa_align.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_graph.c -I./include -o src/abpoa_graph.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_plot.c -I./include -o src/abpoa_plot.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seed.c -I./include -o src/abpoa_seed.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seq.c -I./include -o src/abpoa_seq.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_output.c -I./include -o src/abpoa_output.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kalloc.c -I./include -o src/kalloc.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kstring.c -I./include -o src/kstring.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/simd_abpoa_align.c -o src/simd_abpoa_align.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/simd_check.c -o src/simd_check.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/utils.c -I./include -o src/utils.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C src/abpoa_seed.c: In function ‘collect_anchors1’: src/abpoa_seed.c:338:34: warning: ‘j’ may be used uninitialized [-Wmaybe-uninitialized] 338 | xi = mm.a[i].x, xj = mm.a[j].x; | ^ src/abpoa_seed.c:332:12: note: ‘j’ was declared here 332 | int i, j, _i, _j; uint64_t xi, xj, _xi, _xj, _yi, _yj, a; | ^ src/simd_abpoa_align.c: In function ‘simd_abpoa_align_sequence_to_subgraph’: src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ if [ ! -d ./lib ]; then mkdir ./lib; fi ar -csr lib/libabpoa.a ./src/abpoa_align.o ./src/abpoa_graph.o ./src/abpoa_plot.o ./src/abpoa_seed.o ./src/abpoa_seq.o ./src/abpoa_output.o ./src/kalloc.o ./src/kstring.o ./src/simd_abpoa_align.o ./src/simd_check.o ./src/utils.o if [ ! -d ./bin ]; then mkdir ./bin; fi cc -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa.o -I./include -L./lib -labpoa -lm -lz -lpthread -o bin/abpoa make[2]: Leaving directory '/build/abpoa-1.4.1' renamed 'bin/abpoa' -> 'bin/abpoa.avx' make -j15 clean clean make[2]: Entering directory '/build/abpoa-1.4.1' rm -f ./src/*.[oa] ./lib/*.[oa] ./bin/abpoa make[2]: 'clean' is up to date. make[2]: Leaving directory '/build/abpoa-1.4.1' make -j15 "INSTALL=install --strip-program=true" all make[2]: Entering directory '/build/abpoa-1.4.1' cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/abpoa.c -o src/abpoa.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_align.c -I./include -o src/abpoa_align.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_graph.c -I./include -o src/abpoa_graph.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_plot.c -I./include -o src/abpoa_plot.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seed.c -I./include -o src/abpoa_seed.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seq.c -I./include -o src/abpoa_seq.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_output.c -I./include -o src/abpoa_output.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kalloc.c -I./include -o src/kalloc.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kstring.c -I./include -o src/kstring.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/simd_abpoa_align.c -o src/simd_abpoa_align.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/simd_check.c -o src/simd_check.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/utils.c -I./include -o src/utils.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C src/abpoa_seed.c: In function ‘collect_anchors1’: src/abpoa_seed.c:338:34: warning: ‘j’ may be used uninitialized [-Wmaybe-uninitialized] 338 | xi = mm.a[i].x, xj = mm.a[j].x; | ^ src/abpoa_seed.c:332:12: note: ‘j’ was declared here 332 | int i, j, _i, _j; uint64_t xi, xj, _xi, _xj, _yi, _yj, a; | ^ src/simd_abpoa_align.c: In function ‘simd_abpoa_align_sequence_to_subgraph’: src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ if [ ! -d ./lib ]; then mkdir ./lib; fi ar -csr lib/libabpoa.a ./src/abpoa_align.o ./src/abpoa_graph.o ./src/abpoa_plot.o ./src/abpoa_seed.o ./src/abpoa_seq.o ./src/abpoa_output.o ./src/kalloc.o ./src/kstring.o ./src/simd_abpoa_align.o ./src/simd_check.o ./src/utils.o if [ ! -d ./bin ]; then mkdir ./bin; fi cc -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa.o -I./include -L./lib -labpoa -lm -lz -lpthread -o bin/abpoa make[2]: Leaving directory '/build/abpoa-1.4.1' renamed 'bin/abpoa' -> 'bin/abpoa.sse4.1' make -j15 clean clean make[2]: Entering directory '/build/abpoa-1.4.1' rm -f ./src/*.[oa] ./lib/*.[oa] ./bin/abpoa make[2]: 'clean' is up to date. make[2]: Leaving directory '/build/abpoa-1.4.1' make -j15 "INSTALL=install --strip-program=true" all make[2]: Entering directory '/build/abpoa-1.4.1' cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/abpoa.c -o src/abpoa.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_align.c -I./include -o src/abpoa_align.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_graph.c -I./include -o src/abpoa_graph.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_plot.c -I./include -o src/abpoa_plot.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seed.c -I./include -o src/abpoa_seed.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seq.c -I./include -o src/abpoa_seq.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_output.c -I./include -o src/abpoa_output.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kalloc.c -I./include -o src/kalloc.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kstring.c -I./include -o src/kstring.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/simd_abpoa_align.c -o src/simd_abpoa_align.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/simd_check.c -o src/simd_check.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/utils.c -I./include -o src/utils.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C src/abpoa_seed.c: In function ‘collect_anchors1’: src/abpoa_seed.c:338:34: warning: ‘j’ may be used uninitialized [-Wmaybe-uninitialized] 338 | xi = mm.a[i].x, xj = mm.a[j].x; | ^ src/abpoa_seed.c:332:12: note: ‘j’ was declared here 332 | int i, j, _i, _j; uint64_t xi, xj, _xi, _xj, _yi, _yj, a; | ^ src/simd_abpoa_align.c: In function ‘simd_abpoa_align_sequence_to_subgraph’: src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ if [ ! -d ./lib ]; then mkdir ./lib; fi ar -csr lib/libabpoa.a ./src/abpoa_align.o ./src/abpoa_graph.o ./src/abpoa_plot.o ./src/abpoa_seed.o ./src/abpoa_seq.o ./src/abpoa_output.o ./src/kalloc.o ./src/kstring.o ./src/simd_abpoa_align.o ./src/simd_check.o ./src/utils.o if [ ! -d ./bin ]; then mkdir ./bin; fi cc -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa.o -I./include -L./lib -labpoa -lm -lz -lpthread -o bin/abpoa make[2]: Leaving directory '/build/abpoa-1.4.1' renamed 'bin/abpoa' -> 'bin/abpoa.ssse3' make -j15 clean clean make[2]: Entering directory '/build/abpoa-1.4.1' rm -f ./src/*.[oa] ./lib/*.[oa] ./bin/abpoa make[2]: 'clean' is up to date. make[2]: Leaving directory '/build/abpoa-1.4.1' make -j15 "INSTALL=install --strip-program=true" all make[2]: Entering directory '/build/abpoa-1.4.1' cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/abpoa.c -o src/abpoa.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_align.c -I./include -o src/abpoa_align.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_graph.c -I./include -o src/abpoa_graph.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_plot.c -I./include -o src/abpoa_plot.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seed.c -I./include -o src/abpoa_seed.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seq.c -I./include -o src/abpoa_seq.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_output.c -I./include -o src/abpoa_output.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kalloc.c -I./include -o src/kalloc.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kstring.c -I./include -o src/kstring.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/simd_abpoa_align.c -o src/simd_abpoa_align.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/simd_check.c -o src/simd_check.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/utils.c -I./include -o src/utils.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C src/abpoa_seed.c: In function ‘collect_anchors1’: src/abpoa_seed.c:338:34: warning: ‘j’ may be used uninitialized [-Wmaybe-uninitialized] 338 | xi = mm.a[i].x, xj = mm.a[j].x; | ^ src/abpoa_seed.c:332:12: note: ‘j’ was declared here 332 | int i, j, _i, _j; uint64_t xi, xj, _xi, _xj, _yi, _yj, a; | ^ src/simd_abpoa_align.c: In function ‘simd_abpoa_align_sequence_to_subgraph’: src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ if [ ! -d ./lib ]; then mkdir ./lib; fi ar -csr lib/libabpoa.a ./src/abpoa_align.o ./src/abpoa_graph.o ./src/abpoa_plot.o ./src/abpoa_seed.o ./src/abpoa_seq.o ./src/abpoa_output.o ./src/kalloc.o ./src/kstring.o ./src/simd_abpoa_align.o ./src/simd_check.o ./src/utils.o if [ ! -d ./bin ]; then mkdir ./bin; fi cc -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa.o -I./include -L./lib -labpoa -lm -lz -lpthread -o bin/abpoa make[2]: Leaving directory '/build/abpoa-1.4.1' renamed 'bin/abpoa' -> 'bin/abpoa.sse3' make -j15 clean clean make[2]: Entering directory '/build/abpoa-1.4.1' rm -f ./src/*.[oa] ./lib/*.[oa] ./bin/abpoa make[2]: 'clean' is up to date. make[2]: Leaving directory '/build/abpoa-1.4.1' dh_auto_build --buildsystem=makefile -- all make -j15 "INSTALL=install --strip-program=true" all make[2]: Entering directory '/build/abpoa-1.4.1' cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/abpoa.c -o src/abpoa.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_align.c -I./include -o src/abpoa_align.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_graph.c -I./include -o src/abpoa_graph.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_plot.c -I./include -o src/abpoa_plot.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seed.c -I./include -o src/abpoa_seed.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seq.c -I./include -o src/abpoa_seq.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_output.c -I./include -o src/abpoa_output.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kalloc.c -I./include -o src/kalloc.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kstring.c -I./include -o src/kstring.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/simd_abpoa_align.c -o src/simd_abpoa_align.o cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -I./include src/simd_check.c -o src/simd_check.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc -c -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/utils.c -I./include -o src/utils.o cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C cc1: warning: command-line option ‘-frelease’ is valid for D but not for C src/abpoa_seed.c: In function ‘collect_anchors1’: src/abpoa_seed.c:338:34: warning: ‘j’ may be used uninitialized [-Wmaybe-uninitialized] 338 | xi = mm.a[i].x, xj = mm.a[j].x; | ^ src/abpoa_seed.c:332:12: note: ‘j’ was declared here 332 | int i, j, _i, _j; uint64_t xi, xj, _xi, _xj, _yi, _yj, a; | ^ src/simd_abpoa_align.c: In function ‘simd_abpoa_align_sequence_to_subgraph’: src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1079:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1079 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1083:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1083 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1088:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1088 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1688:13: note: in expansion of macro ‘simd_abpoa_lg_align_sequence_to_graph_core’ 1688 | simd_abpoa_lg_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1109:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1109 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1112:13: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1112 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1053:18: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 1053 | if (_dp_h[i] > max) { \ | ^ src/simd_abpoa_align.c:1046:11: note: ‘a’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1054:40: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized] 1054 | max = _dp_h[i]; max_i = _qi[i]; \ | ^ src/simd_abpoa_align.c:1046:29: note: ‘b’ declared here 1046 | SIMDi a = dp_h[end_sn], b = qi[end_sn]; \ | ^ src/simd_abpoa_align.c:1117:17: note: in expansion of macro ‘simd_abpoa_max_in_row’ 1117 | simd_abpoa_max_in_row(score_t, SIMDSetIfGreater, SIMDGetIfGreater); \ | ^~~~~~~~~~~~~~~~~~~~~ src/simd_abpoa_align.c:1691:13: note: in expansion of macro ‘simd_abpoa_ag_align_sequence_to_graph_core’ 1691 | simd_abpoa_ag_align_sequence_to_graph_core(int16_t, _simd_p16, SIMDSetOnei16, SIMDMaxi16, \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ if [ ! -d ./lib ]; then mkdir ./lib; fi ar -csr lib/libabpoa.a ./src/abpoa_align.o ./src/abpoa_graph.o ./src/abpoa_plot.o ./src/abpoa_seed.o ./src/abpoa_seq.o ./src/abpoa_output.o ./src/kalloc.o ./src/kstring.o ./src/simd_abpoa_align.o ./src/simd_check.o ./src/utils.o if [ ! -d ./bin ]; then mkdir ./bin; fi cc -g -O2 -ffile-prefix-map=/build/abpoa-1.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -Wall -O3 -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -Wall -O3 -frelease -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa.o -I./include -L./lib -labpoa -lm -lz -lpthread -o bin/abpoa make[2]: Leaving directory '/build/abpoa-1.4.1' mv -v bin/abpoa bin/abpoa.generic renamed 'bin/abpoa' -> 'bin/abpoa.generic' cp debian/abpoa-dispatch.sh bin/abpoa make[1]: Leaving directory '/build/abpoa-1.4.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/abpoa-1.4.1' # Tests from the README.md document ./bin/abpoa ./test_data/seq.fa > cons.fa [main] CMD: ./bin/abpoa.avx ./test_data/seq.fa [abpoa_main] Real time: 0.001 sec; CPU: 0.004 sec; Peak RSS: 0.002 GB. ./bin/abpoa ./test_data/heter.fa > 2cons.fa [main] CMD: ./bin/abpoa.avx ./test_data/heter.fa [abpoa_main] Real time: 0.053 sec; CPU: 0.035 sec; Peak RSS: 0.010 GB. ./bin/abpoa -r1 ./test_data/seq.fa > out.msa [main] CMD: ./bin/abpoa.avx -r1 ./test_data/seq.fa [abpoa_main] Real time: 0.001 sec; CPU: 0.004 sec; Peak RSS: 0.002 GB. ./bin/abpoa -r2 ./test_data/seq.fa > out_cons.msa [main] CMD: ./bin/abpoa.avx -r2 ./test_data/seq.fa [abpoa_main] Real time: 0.001 sec; CPU: 0.004 sec; Peak RSS: 0.003 GB. ./bin/abpoa -r3 ./test_data/seq.fa > out.gfa [main] CMD: ./bin/abpoa.avx -r3 ./test_data/seq.fa [abpoa_main] Real time: 0.001 sec; CPU: 0.004 sec; Peak RSS: 0.003 GB. ./bin/abpoa -r4 ./test_data/seq.fa > out4.gfa [main] CMD: ./bin/abpoa.avx -r4 ./test_data/seq.fa [abpoa_main] Real time: 0.001 sec; CPU: 0.004 sec; Peak RSS: 0.003 GB. cp out.gfa in.gfa cp out.msa in.msa ./bin/abpoa -i in.gfa ./test_data/seq.fa -r3 > out.gfa [main] CMD: ./bin/abpoa.avx -i in.gfa -r3 ./test_data/seq.fa [abpoa_main] Real time: 0.002 sec; CPU: 0.004 sec; Peak RSS: 0.003 GB. ./bin/abpoa -i in.msa ./test_data/seq.fa -r1 > out.msa [main] CMD: ./bin/abpoa.avx -i in.msa -r1 ./test_data/seq.fa [abpoa_main] Real time: 0.001 sec; CPU: 0.004 sec; Peak RSS: 0.002 GB. ./bin/abpoa ./test_data/seq.fa -g poa.png > cons.fa [main] CMD: ./bin/abpoa.avx -g poa.png ./test_data/seq.fa [abpoa_main] Real time: 0.887 sec; CPU: 0.004 sec; Peak RSS: 0.003 GB. ./bin/abpoa ./test_data/heter.fa -d2 [main] CMD: ./bin/abpoa.avx -d2 ./test_data/heter.fa [abpoa_main] Real time: 0.036 sec; CPU: 0.037 sec; Peak RSS: 0.009 GB. >Consensus_sequence_1 0,2,3,4,6,8,9,11,12 CCATTCCCACCATCCTTACCATCAACATCACCATCCCCACCATCCCCAACACCATTCCCACCATCCCTACCATCACCATCACCATCCCCACCAACATCCCCACCACCATCCTCACTACCATCCCCACCACCATTTCCACCATTCCCACCACAGTCACCATCACCCCCACCATCCCCATCATCATCCGCACCATCCCCACCATCCCCACCACCATCTCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCTCGTTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCTCGTTACCATCCCCACCACCTTTTCCACCATTCCCACCATCATCCCCACCGCCATCCTCGTTACCATCCCCACCACCTTTTCCACCATTCCCACCATCTCCAACACCTCCTCCACCATCATCCCCACCATCCCCACCACCTTCTCCACCATCATTCTCACCATCCCCACCACCATCTCCACCACCATTCTCACCATCTCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCATCATCCCCACCATCC >Consensus_sequence_2 1,5,7,10,13,14 CCATTCCCACCATCCTTACCATCAACATCACCATCCCCACCATCCCCAACACCATTCCCACCATCCCTACCATCACCATCACCATCCCCACCAACATCCCCACCACCATCCTCACTACCATCCCCACCACCATTTCCACCATTCCCACCACAGTCACCATCACCCCCACCATCCCCATCAACATCCGCACCATCCCCACCATCCCCAACACCATTCCCACCATCCCTACCATCACCATCACCATCCCCACCAACATCCCCACCACCATCCTCACTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCTCAGTCACCATCACCACCACCATCCCCATCATCATCCCCACCACCATTTCCACCATTCCCCACCATCATCCCCACCACCATCTCCATTACCATCCCCACCACCATCTCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCTCGTTACCATCCCCACCACCTTTTCCACCATTCCCACCATCTCCAACACCTCCCCCACCATCATTCCCACCATCTCCAACACCTCCCCCACCATCATCCCCACCATCCCCACCACCTTCTCCACCATCATTCTCACCATCCCCACCACCATCTCCACCATCCCCATTCTCACCATGCCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCATCATCCCCACCATCC make[1]: Leaving directory '/build/abpoa-1.4.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/abpoa-1.4.1/debian/python3-pyabpoa /build/abpoa-1.4.1/setup.py:6: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup /usr/lib/python3.11/distutils/dist.py:274: UserWarning: Unknown distribution option: 'long_description_content_type' warnings.warn(msg) /usr/lib/python3.11/distutils/dist.py:274: UserWarning: Unknown distribution option: 'install_requires' warnings.warn(msg) running install running build running build_ext skipping 'python/pyabpoa.c' Cython extension (up-to-date) running install_lib creating /build/abpoa-1.4.1/debian/python3-pyabpoa creating /build/abpoa-1.4.1/debian/python3-pyabpoa/usr creating /build/abpoa-1.4.1/debian/python3-pyabpoa/usr/lib creating /build/abpoa-1.4.1/debian/python3-pyabpoa/usr/lib/python3.11 creating /build/abpoa-1.4.1/debian/python3-pyabpoa/usr/lib/python3.11/dist-packages copying /build/abpoa-1.4.1/.pybuild/cpython3_3.11_pyabpoa/build/pyabpoa.cpython-311-x86_64-linux-gnu.so -> /build/abpoa-1.4.1/debian/python3-pyabpoa/usr/lib/python3.11/dist-packages running install_egg_info Writing /build/abpoa-1.4.1/debian/python3-pyabpoa/usr/lib/python3.11/dist-packages/pyabpoa-1.4.1.egg-info dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild debian/rules override_dh_gencontrol make[1]: Entering directory '/build/abpoa-1.4.1' dh_gencontrol -- \ -Vsimde:Built-Using="simde (= 0.7.4~rc2-2), " make[1]: Leaving directory '/build/abpoa-1.4.1' dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pyabpoa-dbgsym' in '../python3-pyabpoa-dbgsym_1.4.1-3_amd64.deb'. dpkg-deb: building package 'python3-pyabpoa' in '../python3-pyabpoa_1.4.1-3_amd64.deb'. dpkg-deb: building package 'abpoa' in '../abpoa_1.4.1-3_amd64.deb'. dpkg-deb: building package 'abpoa-dbgsym' in '../abpoa-dbgsym_1.4.1-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../abpoa_1.4.1-3_amd64.buildinfo dpkg-genchanges --build=binary -O../abpoa_1.4.1-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1936544 and its subdirectories I: Current time: Mon May 15 04:12:59 -12 2023 I: pbuilder-time-stamp: 1684167179 Mon May 15 16:13:00 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Mon May 15 16:13:00 UTC 2023 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Mon May 15 16:16:09 UTC 2023 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Mon May 15 16:16:10 UTC 2023 I: abpoa_1.4.1-3_amd64.changes: Format: 1.8 Date: Wed, 03 Aug 2022 13:15:25 +0200 Source: abpoa Binary: abpoa abpoa-dbgsym python3-pyabpoa python3-pyabpoa-dbgsym Architecture: amd64 Version: 1.4.1-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: abpoa - adaptive banded Partial Order Alignment python3-pyabpoa - adaptive banded Partial Order Alignment - python3 module Closes: 1016207 Changes: abpoa (1.4.1-3) unstable; urgency=medium . * d/t/run-unit-test: do not run if a simd specific file is missing. * d/t/run-unit-test: compare deterministic results to reference data. * d/rules: move preprocessor flags definition to CPPFLAGS. * d/rules: SIMDe: enable native aliases in CPPFLAGS. (Closes: #1016207) Checksums-Sha1: 600c8d849bfdba58eed161f73931cae12131de47 1690012 abpoa-dbgsym_1.4.1-3_amd64.deb ef077db7780e1069b2c1591bb2e19fb30c0cae9c 8455 abpoa_1.4.1-3_amd64.buildinfo 0cc457de4fab398ed329551aa2fd545c9515df3b 262540 abpoa_1.4.1-3_amd64.deb 5e5d33bb2b7d0432e72bd732b8293c3487264d40 547924 python3-pyabpoa-dbgsym_1.4.1-3_amd64.deb b40b173654938620935494b34a9b6f355bc56fbb 145548 python3-pyabpoa_1.4.1-3_amd64.deb Checksums-Sha256: 715bb202ed29ac2f2d60b6b1905acde93e9577fe0e0f30f8d51a88baa5df7227 1690012 abpoa-dbgsym_1.4.1-3_amd64.deb be8378238298a0e9f40603f507a308476114c0e970c636f98f5a1a7964dd72df 8455 abpoa_1.4.1-3_amd64.buildinfo f47f8e56bd83ec80fe3c99a88ccac0810a295480463922c1af85fed0c71a981d 262540 abpoa_1.4.1-3_amd64.deb 2fabe976991612b748dea88632e20ab09da5df7537778f234049aef64278ccb6 547924 python3-pyabpoa-dbgsym_1.4.1-3_amd64.deb ad2cd9206e35ccd2af138853bc38e0deb07b7d198665f7ad1d22e348bea0f20e 145548 python3-pyabpoa_1.4.1-3_amd64.deb Files: 0e0018acce9aedb8da4b2af5bc113bbc 1690012 debug optional abpoa-dbgsym_1.4.1-3_amd64.deb 29cf810afd2d8dbf2ab759ac50e95c66 8455 science optional abpoa_1.4.1-3_amd64.buildinfo 244ccb014b5567aa4da38a91cb9b487d 262540 science optional abpoa_1.4.1-3_amd64.deb 8399b8fd3779183e1e16b29d4b16b474 547924 debug optional python3-pyabpoa-dbgsym_1.4.1-3_amd64.deb 0aca8ab10412872f93ec01110c34132f 145548 python optional python3-pyabpoa_1.4.1-3_amd64.deb Mon May 15 16:16:11 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.FuxPfXq0/abpoa_1.4.1-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.FuxPfXq0/abpoa_1.4.1-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.FuxPfXq0/abpoa_1.4.1-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.FuxPfXq0/b1/abpoa_1.4.1-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.FuxPfXq0/b2/abpoa_1.4.1-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.426s) 0.426s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.056s) 0.055s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Mon May 15 16:16:12 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Mon May 15 16:16:12 UTC 2023 I: abpoa from bookworm built successfully and reproducibly on amd64. Mon May 15 16:16:13 UTC 2023 I: Submitting .buildinfo files to external archives: Mon May 15 16:16:13 UTC 2023 I: Submitting 12K b1/abpoa_1.4.1-3_amd64.buildinfo.asc Mon May 15 16:16:15 UTC 2023 I: Submitting 12K b2/abpoa_1.4.1-3_amd64.buildinfo.asc Mon May 15 16:16:16 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon May 15 16:16:16 UTC 2023 I: Done submitting .buildinfo files. Mon May 15 16:16:16 UTC 2023 I: Removing signed abpoa_1.4.1-3_amd64.buildinfo.asc files: removed './b1/abpoa_1.4.1-3_amd64.buildinfo.asc' removed './b2/abpoa_1.4.1-3_amd64.buildinfo.asc'