I: pbuilder: network access will be disabled during build I: Current time: Wed Jun 11 02:39:26 +14 2025 I: pbuilder-time-stamp: 1749559166 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [twopaco_1.0.0+dfsg-1.dsc] I: copying [./twopaco_1.0.0+dfsg.orig.tar.xz] I: copying [./twopaco_1.0.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Sep 29 05:53:28 2022 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./twopaco_1.0.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting twopaco in twopaco-1.0.0+dfsg dpkg-source: info: unpacking twopaco_1.0.0+dfsg.orig.tar.xz dpkg-source: info: unpacking twopaco_1.0.0+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/113845/tmp/hooks/D01_modify_environment starting debug: Running on ionos16-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jun 10 12:39 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/113845/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/113845/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=29c468f64fc545a7a862f14251fc0286 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=113845 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.htYSRAMp/pbuilderrc_w1Jl --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.htYSRAMp/b2 --logfile b2/build.log twopaco_1.0.0+dfsg-1.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 8 14:05 /bin -> usr/bin I: user script /srv/workspace/pbuilder/113845/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libtbb-dev, libtclap-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19684 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libtbb-dev; however: Package libtbb-dev is not installed. pbuilder-satisfydepends-dummy depends on libtclap-dev; however: Package libtclap-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhwloc15{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsub-override-perl{a} libtbb-dev{a} libtbb12{a} libtbbbind-2-5{a} libtbbmalloc2{a} libtclap-dev{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libhwloc-plugins libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 60 newly installed, 0 to remove and 0 not upgraded. Need to get 41.2 MB of archives. After unpacking 154 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 libproc2-0 i386 2:4.0.4-4 [65.4 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 procps i386 2:4.0.4-4 [876 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3 [42.9 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-4 [1194 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40-8 [97.2 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 man-db i386 2.12.1-1 [1421 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 autopoint all 0.21-14 [496 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.9.14+dfsg-1.3+b3 [727 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 libarchive13t64 i386 3.7.2-2 [387 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b3 [314 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.20.1-6+b1 [36.1 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.1~rc2-1 [22.8 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.20.1-6+b1 [83.2 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-3 [9432 B] Get: 26 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.20.1-6+b1 [360 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.20.1-6+b1 [145 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-6 [20.5 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-6 [60.6 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 libldap-2.5-0 i386 2.5.17+dfsg-1 [198 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 libnghttp2-14 i386 1.61.0-1+b1 [84.0 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 libssh2-1t64 i386 1.11.0-4.1+b2 [225 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 libcurl4t64 i386 8.7.1-5 [478 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.2-1 [107 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 libjsoncpp25 i386 1.9.5-6+b2 [89.2 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 librhash0 i386 1.4.3-3+b1 [143 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 libuv1t64 i386 1.48.0-1.1 [156 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 cmake-data all 3.29.2-2 [2167 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 cmake i386 3.29.2-2 [11.9 MB] Get: 42 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-7 [517 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 49 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.191-1+b1 [194 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 debhelper all 13.15.3 [901 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 libhwloc15 i386 2.10.0-1+b1 [175 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 libtbbmalloc2 i386 2021.11.0-2 [48.3 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 libtbbbind-2-5 i386 2021.11.0-2 [14.2 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 libtbb12 i386 2021.11.0-2 [89.3 kB] Get: 59 http://deb.debian.org/debian unstable/main i386 libtbb-dev i386 2021.11.0-2 [193 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 libtclap-dev i386 1.2.5-1+b1 [3360 kB] Fetched 41.2 MB in 1s (66.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19684 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_i386.deb ... Unpacking libproc2-0:i386 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-4_i386.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-14+b1_i386.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-4_i386.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40-8_i386.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../10-libpipeline1_1.5.7-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.12.1-1_i386.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../17-libicu72_72.1-4+b1_i386.deb ... Unpacking libicu72:i386 (72.1-4+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../18-libxml2_2.9.14+dfsg-1.3+b3_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package libarchive13t64:i386. Preparing to unpack .../19-libarchive13t64_3.7.2-2_i386.deb ... Unpacking libarchive13t64:i386 (3.7.2-2) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../20-libbrotli1_1.1.0-2+b3_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b3) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../21-libkrb5support0_1.20.1-6+b1_i386.deb ... Unpacking libkrb5support0:i386 (1.20.1-6+b1) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../22-libcom-err2_1.47.1~rc2-1_i386.deb ... Unpacking libcom-err2:i386 (1.47.1~rc2-1) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../23-libk5crypto3_1.20.1-6+b1_i386.deb ... Unpacking libk5crypto3:i386 (1.20.1-6+b1) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../24-libkeyutils1_1.6.3-3_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../25-libkrb5-3_1.20.1-6+b1_i386.deb ... Unpacking libkrb5-3:i386 (1.20.1-6+b1) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../26-libgssapi-krb5-2_1.20.1-6+b1_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.20.1-6+b1) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../27-libsasl2-modules-db_2.1.28+dfsg1-6_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg1-6) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../28-libsasl2-2_2.1.28+dfsg1-6_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg1-6) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../29-libldap-2.5-0_2.5.17+dfsg-1_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.17+dfsg-1) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../30-libnghttp2-14_1.61.0-1+b1_i386.deb ... Unpacking libnghttp2-14:i386 (1.61.0-1+b1) ... Selecting previously unselected package libpsl5t64:i386. Preparing to unpack .../31-libpsl5t64_0.21.2-1.1_i386.deb ... Unpacking libpsl5t64:i386 (0.21.2-1.1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../32-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:i386. Preparing to unpack .../33-libssh2-1t64_1.11.0-4.1+b2_i386.deb ... Unpacking libssh2-1t64:i386 (1.11.0-4.1+b2) ... Selecting previously unselected package libcurl4t64:i386. Preparing to unpack .../34-libcurl4t64_8.7.1-5_i386.deb ... Unpacking libcurl4t64:i386 (8.7.1-5) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../35-libexpat1_2.6.2-1_i386.deb ... Unpacking libexpat1:i386 (2.6.2-1) ... Selecting previously unselected package libjsoncpp25:i386. Preparing to unpack .../36-libjsoncpp25_1.9.5-6+b2_i386.deb ... Unpacking libjsoncpp25:i386 (1.9.5-6+b2) ... Selecting previously unselected package librhash0:i386. Preparing to unpack .../37-librhash0_1.4.3-3+b1_i386.deb ... Unpacking librhash0:i386 (1.4.3-3+b1) ... Selecting previously unselected package libuv1t64:i386. Preparing to unpack .../38-libuv1t64_1.48.0-1.1_i386.deb ... Unpacking libuv1t64:i386 (1.48.0-1.1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../39-cmake-data_3.29.2-2_all.deb ... Unpacking cmake-data (3.29.2-2) ... Selecting previously unselected package cmake. Preparing to unpack .../40-cmake_3.29.2-2_i386.deb ... Unpacking cmake (3.29.2-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../41-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../42-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../43-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../44-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. 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Setting up procps (2:4.0.4-4) ... Setting up libsub-override-perl (0.10-1) ... Setting up cmake-data (3.29.2-2) ... Setting up libkrb5-3:i386 (1.20.1-6+b1) ... Setting up libssh2-1t64:i386 (1.11.0-4.1+b2) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libldap-2.5-0:i386 (2.5.17+dfsg-1) ... Setting up libtbbbind-2-5:i386 (2021.11.0-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:i386 (1.20.1-6+b1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up libarchive13t64:i386 (3.7.2-2) ... Setting up libcurl4t64:i386 (8.7.1-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtbb12:i386 (2021.11.0-2) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up cmake (3.29.2-2) ... Setting up libtbb-dev:i386 (2021.11.0-2) ... Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.38-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/113845/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/113845/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/twopaco-1.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../twopaco_1.0.0+dfsg-1_source.changes dpkg-buildpackage: info: source package twopaco dpkg-buildpackage: info: source version 1.0.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --sourcedir=src dh_auto_clean -O--sourcedir=src dh_autoreconf_clean -O--sourcedir=src dh_clean -O--sourcedir=src debian/rules binary dh binary --sourcedir=src dh_update_autotools_config -O--sourcedir=src dh_autoreconf -O--sourcedir=src dh_auto_configure -O--sourcedir=src cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu ../src -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (0.5s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu dh_auto_build -O--sourcedir=src cd obj-i686-linux-gnu && make -j21 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/twopaco-1.0.0+dfsg/src -B/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' make -f graphdump/CMakeFiles/graphdump.dir/build.make graphdump/CMakeFiles/graphdump.dir/depend make -f graphconstructor/CMakeFiles/twopaco.dir/build.make graphconstructor/CMakeFiles/twopaco.dir/depend make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/twopaco-1.0.0+dfsg/src /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphdump /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphdump/CMakeFiles/graphdump.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/twopaco-1.0.0+dfsg/src /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor/CMakeFiles/twopaco.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' make -f graphdump/CMakeFiles/graphdump.dir/build.make graphdump/CMakeFiles/graphdump.dir/build make -f graphconstructor/CMakeFiles/twopaco.dir/build.make graphconstructor/CMakeFiles/twopaco.dir/build make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' [ 7%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/constructor.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security 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-std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/graphdump.cpp.o -MF CMakeFiles/graphdump.dir/graphdump.cpp.o.d -o CMakeFiles/graphdump.dir/graphdump.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp [ 42%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphdump && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/streamfastaparser.cpp cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -MF CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o.d -o CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/concurrentbitvector.cpp cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -MF CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/dnachar.cpp [ 50%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o -MF CMakeFiles/twopaco.dir/compressedstring.cpp.o.d -o CMakeFiles/twopaco.dir/compressedstring.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/compressedstring.cpp [ 71%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o [ 71%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o [ 78%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/streamfastaparser.cpp [ 78%] Building CXX object graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o [ 85%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -MF CMakeFiles/twopaco.dir/vertexenumerator.cpp.o.d -o CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/vertexenumerator.cpp cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphdump && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -MF CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/dnachar.cpp cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o -MF CMakeFiles/twopaco.dir/test.cpp.o.d -o CMakeFiles/twopaco.dir/test.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/test.cpp cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -MF CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/spooky/SpookyV2.cpp cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o -MF CMakeFiles/twopaco.dir/common.cpp.o.d -o CMakeFiles/twopaco.dir/common.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/common.cpp /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/constructor.cpp: In function ‘int main(int, char**)’: /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/constructor.cpp:112:25: warning: conversion from ‘long long unsigned int’ to ‘unsigned int’ changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 112 | UINT64_MAX, | ^~~~~~~~~~ /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp: In function ‘void GenerateFastaOutput(const std::string&, const std::vector >&, size_t)’: /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:519:32: warning: unsigned conversion from ‘int64_t’ {aka ‘long long int’} to ‘std::vector::size_type’ {aka ‘unsigned int’} changes value from ‘34359738368’ to ‘0’ [-Woverflow] 519 | std::vector seen(MAX_SEGMENT_NUMBER, 0); | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp: In instantiation of ‘void GenerateGfaOutput(const std::string&, const std::vector >&, size_t, bool, G) [with G = Gfa1Generator; std::string = std::__cxx11::basic_string; size_t = unsigned int]’: /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:676:21: required from here /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:401:32: warning: unsigned conversion from ‘int64_t’ {aka ‘long long int’} to ‘std::vector::size_type’ {aka ‘unsigned int’} changes value from ‘34359738368’ to ‘0’ [-Woverflow] 401 | std::vector seen(MAX_SEGMENT_NUMBER, 0); | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp: In instantiation of ‘void GenerateGfaOutput(const std::string&, const std::vector >&, size_t, bool, G) [with G = Gfa2Generator; std::string = std::__cxx11::basic_string; size_t = unsigned int]’: /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:685:21: required from here /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:401:32: warning: unsigned conversion from ‘int64_t’ {aka ‘long long int’} to ‘std::vector::size_type’ {aka ‘unsigned int’} changes value from ‘34359738368’ to ‘0’ [-Woverflow] [ 92%] Linking CXX executable graphdump cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphdump && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphdump.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro CMakeFiles/graphdump.dir/graphdump.cpp.o CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -o graphdump -ltbb -lpthread make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' [ 92%] Built target graphdump [100%] Linking CXX executable twopaco cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/graphconstructor && /usr/bin/cmake -E cmake_link_script CMakeFiles/twopaco.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o CMakeFiles/twopaco.dir/constructor.cpp.o CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o CMakeFiles/twopaco.dir/compressedstring.cpp.o CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o CMakeFiles/twopaco.dir/test.cpp.o CMakeFiles/twopaco.dir/vertexenumerator.cpp.o CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o CMakeFiles/twopaco.dir/common.cpp.o -o twopaco -ltbb -ltbbmalloc -ltbbmalloc_proxy -lpthread make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' [100%] Built target twopaco make[2]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg' obj-*/graphconstructor/twopaco --test -f 34 example/example.fa ERROR at chr 0 pos 94, 1 != 0 ERROR at chr 0 pos 142, 1 != 0 ERROR at chr 0 pos 202, 1 != 0 ERROR at chr 0 pos 242, 1 != 0 ERROR at chr 0 pos 281, 1 != 0 ERROR at chr 0 pos 355, 1 != 0 ERROR at chr 0 pos 435, 1 != 0 ERROR at chr 0 pos 452, 1 != 0 ERROR at chr 0 pos 619, 1 != 0 ERROR at chr 0 pos 907, 1 != 0 ERROR at chr 0 pos 1013, 1 != 0 ERROR at chr 0 pos 1097, 1 != 0 ERROR at chr 0 pos 1139, 1 != 0 ERROR at chr 0 pos 1154, 1 != 0 ERROR at chr 0 pos 1612, 1 != 0 ERROR at chr 0 pos 1657, 1 != 0 ERROR at chr 0 pos 2728, 1 != 0 ERROR at chr 0 pos 2770, 1 != 0 ERROR at chr 0 pos 3228, 1 != 0 ERROR at chr 0 pos 3329, 1 != 0 ERROR at chr 0 pos 3432, 1 != 0 ERROR at chr 0 pos 3491, 1 != 0 ERROR at chr 0 pos 3745, 1 != 0 ERROR at chr 0 pos 3766, 1 != 0 ERROR at chr 0 pos 4145, 1 != 0 ERROR at chr 0 pos 4373, 1 != 0 ERROR at chr 0 pos 4431, 1 != 0 ERROR at chr 0 pos 4631, 1 != 0 ERROR at chr 0 pos 4635, 1 != 0 ERROR at chr 0 pos 5110, 1 != 0 ERROR at chr 0 pos 5140, 1 != 0 ERROR at chr 0 pos 5157, 1 != 0 ERROR at chr 0 pos 5197, 1 != 0 ERROR at chr 0 pos 5424, 1 != 0 ERROR at chr 0 pos 5428, 1 != 0 ERROR at chr 0 pos 5458, 1 != 0 ERROR at chr 0 pos 5460, 1 != 0 ERROR at chr 0 pos 5552, 1 != 0 ERROR at chr 0 pos 5678, 1 != 0 ERROR at chr 0 pos 5810, 1 != 0 ERROR at chr 0 pos 5986, 1 != 0 ERROR at chr 0 pos 6468, 1 != 0 ERROR at chr 0 pos 6480, 1 != 0 ERROR at chr 0 pos 6816, 1 != 0 ERROR at chr 0 pos 6857, 1 != 0 ERROR at chr 0 pos 6906, 1 != 0 ERROR at chr 0 pos 7256, 1 != 0 ERROR at chr 0 pos 7303, 1 != 0 ERROR at chr 0 pos 7479, 1 != 0 ERROR at chr 0 pos 7565, 1 != 0 ERROR at chr 0 pos 7734, 1 != 0 ERROR at chr 0 pos 8237, 1 != 0 ERROR at chr 0 pos 8328, 1 != 0 ERROR at chr 0 pos 8333, 1 != 0 ERROR at chr 0 pos 8394, 1 != 0 ERROR at chr 0 pos 8791, 1 != 0 ERROR at chr 0 pos 8880, 1 != 0 ERROR at chr 0 pos 8931, 1 != 0 ERROR at chr 1 pos 95, 1 != 0 ERROR at chr 1 pos 145, 1 != 0 ERROR at chr 1 pos 204, 1 != 0 ERROR at chr 1 pos 246, 1 != 0 ERROR at chr 1 pos 285, 1 != 0 ERROR at chr 1 pos 436, 1 != 0 ERROR at chr 1 pos 453, 1 != 0 ERROR at chr 1 pos 576, 1 != 0 ERROR at chr 1 pos 899, 1 != 0 ERROR at chr 1 pos 915, 1 != 0 ERROR at chr 1 pos 1023, 1 != 0 ERROR at chr 1 pos 1105, 1 != 0 ERROR at chr 1 pos 1164, 1 != 0 ERROR at chr 1 pos 1614, 1 != 0 ERROR at chr 1 pos 1659, 1 != 0 ERROR at chr 1 pos 1969, 1 != 0 ERROR at chr 1 pos 2035, 1 != 0 ERROR at chr 1 pos 2102, 1 != 0 ERROR at chr 1 pos 2771, 1 != 0 ERROR at chr 1 pos 3233, 1 != 0 ERROR at chr 1 pos 3436, 1 != 0 ERROR at chr 1 pos 3497, 1 != 0 ERROR at chr 1 pos 3743, 1 != 0 ERROR at chr 1 pos 3751, 1 != 0 ERROR at chr 1 pos 3771, 1 != 0 ERROR at chr 1 pos 4154, 1 != 0 ERROR at chr 1 pos 4438, 1 != 0 ERROR at chr 1 pos 4640, 1 != 0 ERROR at chr 1 pos 4644, 1 != 0 ERROR at chr 1 pos 5116, 1 != 0 ERROR at chr 1 pos 5146, 1 != 0 ERROR at chr 1 pos 5163, 1 != 0 ERROR at chr 1 pos 5426, 1 != 0 ERROR at chr 1 pos 5430, 1 != 0 ERROR at chr 1 pos 5460, 1 != 0 ERROR at chr 1 pos 5462, 1 != 0 ERROR at chr 1 pos 5550, 1 != 0 ERROR at chr 1 pos 5584, 1 != 0 ERROR at chr 1 pos 5678, 1 != 0 ERROR at chr 1 pos 5808, 1 != 0 ERROR at chr 1 pos 5985, 1 != 0 ERROR at chr 1 pos 6171, 1 != 0 ERROR at chr 1 pos 6467, 1 != 0 ERROR at chr 1 pos 6479, 1 != 0 ERROR at chr 1 pos 6849, 1 != 0 ERROR at chr 1 pos 6896, 1 != 0 ERROR at chr 1 pos 7097, 1 != 0 ERROR at chr 1 pos 7557, 1 != 0 ERROR at chr 1 pos 7725, 1 != 0 ERROR at chr 1 pos 7766, 1 != 0 ERROR at chr 1 pos 8026, 1 != 0 ERROR at chr 1 pos 8104, 1 != 0 ERROR at chr 1 pos 8226, 1 != 0 ERROR at chr 1 pos 8319, 1 != 0 ERROR at chr 1 pos 8380, 1 != 0 ERROR at chr 1 pos 8780, 1 != 0 ERROR at chr 1 pos 8918, 1 != 0 ERROR at chr 2 pos 91, 1 != 0 ERROR at chr 2 pos 199, 1 != 0 ERROR at chr 2 pos 233, 1 != 0 ERROR at chr 2 pos 240, 1 != 0 ERROR at chr 2 pos 253, 1 != 0 ERROR at chr 2 pos 279, 1 != 0 ERROR at chr 2 pos 354, 1 != 0 ERROR at chr 2 pos 434, 1 != 0 ERROR at chr 2 pos 451, 1 != 0 ERROR at chr 2 pos 621, 1 != 0 ERROR at chr 2 pos 781, 1 != 0 ERROR at chr 2 pos 1007, 1 != 0 ERROR at chr 2 pos 1092, 1 != 0 ERROR at chr 2 pos 1134, 1 != 0 ERROR at chr 2 pos 1149, 1 != 0 ERROR at chr 2 pos 1601, 1 != 0 ERROR at chr 2 pos 1829, 1 != 0 ERROR at chr 2 pos 1832, 1 != 0 ERROR at chr 2 pos 2134, 1 != 0 ERROR at chr 2 pos 2502, 1 != 0 ERROR at chr 2 pos 2769, 1 != 0 ERROR at chr 2 pos 2978, 1 != 0 ERROR at chr 2 pos 3228, 1 != 0 ERROR at chr 2 pos 3370, 1 != 0 ERROR at chr 2 pos 3408, 1 != 0 ERROR at chr 2 pos 3426, 1 != 0 ERROR at chr 2 pos 3483, 1 != 0 ERROR at chr 2 pos 3725, 1 != 0 ERROR at chr 2 pos 3736, 1 != 0 ERROR at chr 2 pos 3757, 1 != 0 ERROR at chr 2 pos 3994, 1 != 0 ERROR at chr 2 pos 4132, 1 != 0 ERROR at chr 2 pos 4358, 1 != 0 ERROR at chr 2 pos 4418, 1 != 0 ERROR at chr 2 pos 4622, 1 != 0 ERROR at chr 2 pos 4626, 1 != 0 ERROR at chr 2 pos 4760, 1 != 0 ERROR at chr 2 pos 4891, 1 != 0 ERROR at chr 2 pos 5130, 1 != 0 ERROR at chr 2 pos 5147, 1 != 0 ERROR at chr 2 pos 5151, 1 != 0 ERROR at chr 2 pos 5186, 1 != 0 ERROR at chr 2 pos 5414, 1 != 0 ERROR at chr 2 pos 5418, 1 != 0 ERROR at chr 2 pos 5448, 1 != 0 ERROR at chr 2 pos 5450, 1 != 0 ERROR at chr 2 pos 5539, 1 != 0 ERROR at chr 2 pos 5663, 1 != 0 ERROR at chr 2 pos 5799, 1 != 0 ERROR at chr 2 pos 6276, 1 != 0 ERROR at chr 2 pos 6661, 1 != 0 ERROR at chr 2 pos 6777, 1 != 0 ERROR at chr 2 pos 6841, 1 != 0 ERROR at chr 2 pos 6889, 1 != 0 ERROR at chr 2 pos 7236, 1 != 0 ERROR at chr 2 pos 7281, 1 != 0 ERROR at chr 2 pos 7311, 1 != 0 ERROR at chr 2 pos 7458, 1 != 0 ERROR at chr 2 pos 7544, 1 != 0 ERROR at chr 2 pos 7696, 1 != 0 ERROR at chr 2 pos 7718, 1 != 0 ERROR at chr 2 pos 8220, 1 != 0 ERROR at chr 2 pos 8310, 1 != 0 ERROR at chr 2 pos 8315, 1 != 0 ERROR at chr 2 pos 8376, 1 != 0 ERROR at chr 2 pos 8765, 1 != 0 ERROR at chr 2 pos 8852, 1 != 0 ERROR at chr 3 pos 95, 1 != 0 ERROR at chr 3 pos 142, 1 != 0 ERROR at chr 3 pos 204, 1 != 0 ERROR at chr 3 pos 244, 1 != 0 ERROR at chr 3 pos 282, 1 != 0 ERROR at chr 3 pos 290, 1 != 0 ERROR at chr 3 pos 354, 1 != 0 ERROR at chr 3 pos 620, 1 != 0 ERROR at chr 3 pos 1015, 1 != 0 ERROR at chr 3 pos 1101, 1 != 0 ERROR at chr 3 pos 1143, 1 != 0 ERROR at chr 3 pos 1158, 1 != 0 ERROR at chr 3 pos 1663, 1 != 0 ERROR at chr 3 pos 2124, 1 != 0 ERROR at chr 3 pos 2729, 1 != 0 ERROR at chr 3 pos 3084, 1 != 0 ERROR at chr 3 pos 3227, 1 != 0 ERROR at chr 3 pos 3327, 1 != 0 ERROR at chr 3 pos 3487, 1 != 0 ERROR at chr 3 pos 3501, 1 != 0 ERROR at chr 3 pos 3502, 1 != 0 ERROR at chr 3 pos 3503, 1 != 0 ERROR at chr 3 pos 3761, 1 != 0 ERROR at chr 3 pos 3865, 1 != 0 ERROR at chr 3 pos 3988, 1 != 0 ERROR at chr 3 pos 4139, 1 != 0 ERROR at chr 3 pos 4368, 1 != 0 ERROR at chr 3 pos 4409, 1 != 0 ERROR at chr 3 pos 4626, 1 != 0 ERROR at chr 3 pos 4630, 1 != 0 ERROR at chr 3 pos 4650, 1 != 0 ERROR at chr 3 pos 4855, 1 != 0 ERROR at chr 3 pos 5139, 1 != 0 ERROR at chr 3 pos 5152, 1 != 0 ERROR at chr 3 pos 5186, 1 != 0 ERROR at chr 3 pos 5292, 1 != 0 ERROR at chr 3 pos 5344, 1 != 0 ERROR at chr 3 pos 5447, 1 != 0 ERROR at chr 3 pos 5449, 1 != 0 ERROR at chr 3 pos 5543, 1 != 0 ERROR at chr 3 pos 5665, 1 != 0 ERROR at chr 3 pos 5668, 1 != 0 ERROR at chr 3 pos 5716, 1 != 0 ERROR at chr 3 pos 5982, 1 != 0 ERROR at chr 3 pos 6080, 1 != 0 ERROR at chr 3 pos 6463, 1 != 0 ERROR at chr 3 pos 6474, 1 != 0 ERROR at chr 3 pos 6805, 1 != 0 ERROR at chr 3 pos 6892, 1 != 0 ERROR at chr 3 pos 7289, 1 != 0 ERROR at chr 3 pos 7465, 1 != 0 ERROR at chr 3 pos 7721, 1 != 0 ERROR at chr 3 pos 8225, 1 != 0 ERROR at chr 3 pos 8322, 1 != 0 ERROR at chr 3 pos 8449, 1 != 0 ERROR at chr 3 pos 8784, 1 != 0 ERROR at chr 3 pos 8874, 1 != 0 ERROR at chr 4 pos 96, 1 != 0 ERROR at chr 4 pos 134, 1 != 0 ERROR at chr 4 pos 142, 1 != 0 ERROR at chr 4 pos 204, 1 != 0 ERROR at chr 4 pos 286, 1 != 0 ERROR at chr 4 pos 472, 1 != 0 ERROR at chr 4 pos 624, 1 != 0 ERROR at chr 4 pos 811, 1 != 0 ERROR at chr 4 pos 914, 1 != 0 ERROR at chr 4 pos 1017, 1 != 0 ERROR at chr 4 pos 1099, 1 != 0 ERROR at chr 4 pos 1139, 1 != 0 ERROR at chr 4 pos 1153, 1 != 0 ERROR at chr 4 pos 1442, 1 != 0 ERROR at chr 4 pos 1547, 1 != 0 ERROR at chr 4 pos 1599, 1 != 0 ERROR at chr 4 pos 1612, 1 != 0 ERROR at chr 4 pos 1656, 1 != 0 ERROR at chr 4 pos 1700, 1 != 0 ERROR at chr 4 pos 1703, 1 != 0 ERROR at chr 4 pos 1763, 1 != 0 ERROR at chr 4 pos 1861, 1 != 0 ERROR at chr 4 pos 2477, 1 != 0 ERROR at chr 4 pos 2628, 1 != 0 ERROR at chr 4 pos 2723, 1 != 0 ERROR at chr 4 pos 2764, 1 != 0 ERROR at chr 4 pos 2921, 1 != 0 ERROR at chr 4 pos 3221, 1 != 0 ERROR at chr 4 pos 3330, 1 != 0 ERROR at chr 4 pos 3423, 1 != 0 ERROR at chr 4 pos 3482, 1 != 0 ERROR at chr 4 pos 3736, 1 != 0 ERROR at chr 4 pos 3757, 1 != 0 ERROR at chr 4 pos 4139, 1 != 0 ERROR at chr 4 pos 4348, 1 != 0 ERROR at chr 4 pos 4369, 1 != 0 ERROR at chr 4 pos 4426, 1 != 0 ERROR at chr 4 pos 4621, 1 != 0 ERROR at chr 4 pos 4625, 1 != 0 ERROR at chr 4 pos 5093, 1 != 0 ERROR at chr 4 pos 5124, 1 != 0 ERROR at chr 4 pos 5181, 1 != 0 ERROR at chr 4 pos 5447, 1 != 0 ERROR at chr 4 pos 5449, 1 != 0 ERROR at chr 4 pos 5592, 1 != 0 ERROR at chr 4 pos 5795, 1 != 0 ERROR at chr 4 pos 5901, 1 != 0 ERROR at chr 4 pos 5967, 1 != 0 ERROR at chr 4 pos 6011, 1 != 0 ERROR at chr 4 pos 6012, 1 != 0 ERROR at chr 4 pos 6337, 1 != 0 ERROR at chr 4 pos 6444, 1 != 0 ERROR at chr 4 pos 6456, 1 != 0 ERROR at chr 4 pos 6530, 1 != 0 ERROR at chr 4 pos 6786, 1 != 0 ERROR at chr 4 pos 6828, 1 != 0 ERROR at chr 4 pos 6878, 1 != 0 ERROR at chr 4 pos 7278, 1 != 0 ERROR at chr 4 pos 7452, 1 != 0 ERROR at chr 4 pos 7500, 1 != 0 ERROR at chr 4 pos 7711, 1 != 0 ERROR at chr 4 pos 7825, 1 != 0 ERROR at chr 4 pos 7844, 1 != 0 ERROR at chr 4 pos 7846, 1 != 0 ERROR at chr 4 pos 7985, 1 != 0 ERROR at chr 4 pos 8207, 1 != 0 ERROR at chr 4 pos 8297, 1 != 0 ERROR at chr 4 pos 8899, 1 != 0 ERROR at chr 5 pos 92, 1 != 0 ERROR at chr 5 pos 140, 1 != 0 ERROR at chr 5 pos 205, 1 != 0 ERROR at chr 5 pos 277, 1 != 0 ERROR at chr 5 pos 353, 1 != 0 ERROR at chr 5 pos 454, 1 != 0 ERROR at chr 5 pos 617, 1 != 0 ERROR at chr 5 pos 906, 1 != 0 ERROR at chr 5 pos 982, 1 != 0 ERROR at chr 5 pos 1099, 1 != 0 ERROR at chr 5 pos 1141, 1 != 0 ERROR at chr 5 pos 1156, 1 != 0 ERROR at chr 5 pos 1654, 1 != 0 ERROR at chr 5 pos 2549, 1 != 0 ERROR at chr 5 pos 2701, 1 != 0 ERROR at chr 5 pos 2702, 1 != 0 ERROR at chr 5 pos 2726, 1 != 0 ERROR at chr 5 pos 2767, 1 != 0 ERROR at chr 5 pos 3316, 1 != 0 ERROR at chr 5 pos 3418, 1 != 0 ERROR at chr 5 pos 3747, 1 != 0 ERROR at chr 5 pos 4125, 1 != 0 ERROR at chr 5 pos 4351, 1 != 0 ERROR at chr 5 pos 4412, 1 != 0 ERROR at chr 5 pos 5097, 1 != 0 ERROR at chr 5 pos 5126, 1 != 0 ERROR at chr 5 pos 5404, 1 != 0 ERROR at chr 5 pos 5408, 1 != 0 ERROR at chr 5 pos 5450, 1 != 0 ERROR at chr 5 pos 5792, 1 != 0 ERROR at chr 5 pos 6034, 1 != 0 ERROR at chr 5 pos 6325, 1 != 0 ERROR at chr 5 pos 6454, 1 != 0 ERROR at chr 5 pos 6466, 1 != 0 ERROR at chr 5 pos 6639, 1 != 0 ERROR at chr 5 pos 6894, 1 != 0 ERROR at chr 5 pos 7040, 1 != 0 ERROR at chr 5 pos 7240, 1 != 0 ERROR at chr 5 pos 7287, 1 != 0 ERROR at chr 5 pos 7466, 1 != 0 ERROR at chr 5 pos 7551, 1 != 0 ERROR at chr 5 pos 7648, 1 != 0 ERROR at chr 5 pos 7672, 1 != 0 ERROR at chr 5 pos 7719, 1 != 0 ERROR at chr 5 pos 7806, 1 != 0 ERROR at chr 5 pos 8090, 1 != 0 ERROR at chr 5 pos 8310, 1 != 0 ERROR at chr 5 pos 8315, 1 != 0 ERROR at chr 5 pos 8327, 1 != 0 ERROR at chr 5 pos 8376, 1 != 0 ERROR at chr 5 pos 8806, 1 != 0 ERROR at chr 5 pos 8863, 1 != 0 ERROR at chr 5 pos 8967, 1 != 0 Test # 0 FAILED obj-*/graphconstructor/twopaco -f 20 -k 11 example/example.fa -o example/example.dbg Threads = 1 Vertex length = 11 Hash functions = 5 Filter size = 1048576 Capacity = 1 Files: example/example.fa -------------------------------------------------------------------------------- Round 0, 0:1048576 Pass Filling Filtering 1 0 0 2 0 0 True junctions count = 7 False junctions count = 0 Hash table size = 7 Candidate marks count = 16 -------------------------------------------------------------------------------- Reallocating bifurcations time: 0 True marks count: 16 Edges construction time: 0 -------------------------------------------------------------------------------- Distinct junctions = 7 TwoPaCo::buildGraphMain:: allocated with scalable_malloc; freeing. TwoPaCo::buildGraphMain:: Calling scalable_allocation_command(TBBMALLOC_CLEAN_ALL_BUFFERS, 0); obj-*/graphdump/graphdump -f dot example/example.dbg -k 11 > example/example.dot make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedir=src dh_prep -O--sourcedir=src dh_auto_install --destdir=debian/twopaco/ -O--sourcedir=src cd obj-i686-linux-gnu && make -j21 install DESTDIR=/build/reproducible-path/twopaco-1.0.0\+dfsg/debian/twopaco AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/twopaco-1.0.0+dfsg/src -B/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RELEASE" -- Installing: /build/reproducible-path/twopaco-1.0.0+dfsg/debian/twopaco/usr/bin/graphdump -- Installing: /build/reproducible-path/twopaco-1.0.0+dfsg/debian/twopaco/usr/bin/twopaco make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-i686-linux-gnu' dh_installdocs -O--sourcedir=src dh_installchangelogs -O--sourcedir=src debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg' dh_installexamples --sourcedir=/build/reproducible-path/twopaco-1.0.0+dfsg make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg' debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg' dh_installman --sourcedir=/build/reproducible-path/twopaco-1.0.0+dfsg make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg' dh_installsystemduser -O--sourcedir=src dh_perl -O--sourcedir=src dh_link -O--sourcedir=src dh_strip_nondeterminism -O--sourcedir=src dh_compress -O--sourcedir=src dh_fixperms -O--sourcedir=src debian/rules override_dh_missing make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg' dh_missing --list-missing dh_missing: warning: CMakeLists.txt exists in src but is not installed to anywhere dh_missing: warning: common/dnachar.cpp exists in src but is not installed to anywhere dh_missing: warning: common/dnachar.h exists in src but is not installed to anywhere dh_missing: warning: common/junctionapi.h exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/Makefile exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/README.md exists in src but is not installed to anywhere (related file: "/build/reproducible-path/twopaco-1.0.0+dfsg/example/README.md") dh_missing: warning: common/ngramhashing/characterhash.h exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/cyclichash.h exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/example.cpp exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/example2.cpp exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/example3.cpp exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/example4.cpp exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/example64bits.cpp exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/generalhash.h exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/mersennetwister.h exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/rabinkarphash.h exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/speedtesting.cpp exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/threewisehash.h exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/unit.cpp exists in src but is not installed to anywhere dh_missing: warning: common/ngramhashing/ztimer.h exists in src but is not installed to anywhere dh_missing: warning: common/spooky/SpookyV2.cpp exists in src but is not installed to anywhere dh_missing: warning: common/spooky/SpookyV2.h exists in src but is not installed to anywhere dh_missing: warning: common/streamfastaparser.cpp exists in src but is not installed to anywhere dh_missing: warning: common/streamfastaparser.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/CMakeLists.txt exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/assemblyedgeconstructor.cpp exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/assemblyedgeconstructor.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/bifurcationstorage.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/candidateoccurence.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/common.cpp exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/common.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/compressedstring.cpp exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/compressedstring.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/concurrentbitvector.cpp exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/concurrentbitvector.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/constructor.cpp exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/test.cpp exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/test.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/vertexenumerator.cpp exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/vertexenumerator.h exists in src but is not installed to anywhere dh_missing: warning: graphconstructor/vertexrollinghash.h exists in src but is not installed to anywhere dh_missing: warning: graphdump/CMakeLists.txt exists in src but is not installed to anywhere dh_missing: warning: graphdump/glueGfa1.py exists in src but is not installed to anywhere dh_missing: warning: graphdump/glueGfa2.py exists in src but is not installed to anywhere dh_missing: warning: graphdump/graphdump.cpp exists in src but is not installed to anywhere dh_missing: warning: naiveconstructor/naiveconstructor.cpp exists in src but is not installed to anywhere While detecting missing files, dh_missing noted some files with a similar name to those that were missing. This warning /might/ be resolved by replacing references to the missing files with the similarly named ones that dh_missing found - assuming the content is identical. As an example, you might want to replace: * /build/reproducible-path/twopaco-1.0.0+dfsg/example/README.md with: * common/ngramhashing/README.md in a file in debian/ or as argument to one of the dh_* tools called from debian/rules. (Note it is possible the paths are not used verbatim but instead directories containing or globs matching them are used instead) Alternatively, add the missing file to debian/not-installed if it cannot and should not be used. The following debhelper tools have reported what they installed (with files per package) * dh_installdocs: twopaco (0) * dh_installexamples: twopaco (10) * dh_installman: twopaco (2) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.md.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. make[1]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg' dh_dwz -a -O--sourcedir=src dh_strip -a -O--sourcedir=src dh_makeshlibs -a -O--sourcedir=src dh_shlibdeps -a -O--sourcedir=src dh_installdeb -O--sourcedir=src dh_gencontrol -O--sourcedir=src dh_md5sums -O--sourcedir=src dh_builddeb -O--sourcedir=src dpkg-deb: building package 'twopaco' in '../twopaco_1.0.0+dfsg-1_i386.deb'. dpkg-deb: building package 'twopaco-dbgsym' in '../twopaco-dbgsym_1.0.0+dfsg-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../twopaco_1.0.0+dfsg-1_i386.buildinfo dpkg-genchanges --build=binary -O../twopaco_1.0.0+dfsg-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/113845/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/113845/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/113845 and its subdirectories I: Current time: Wed Jun 11 02:41:27 +14 2025 I: pbuilder-time-stamp: 1749559287