I: pbuilder: network access will be disabled during build
I: Current time: Wed Mar 19 13:44:34 +14 2025
I: pbuilder-time-stamp: 1742341474
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [sideretro_1.1.6-2.dsc]
I: copying [./sideretro_1.1.6.orig.tar.gz]
I: copying [./sideretro_1.1.6-2.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./sideretro_1.1.6-2.dsc: unsupported subcommand
dpkg-source: info: extracting sideretro in sideretro-1.1.6
dpkg-source: info: unpacking sideretro_1.1.6.orig.tar.gz
dpkg-source: info: unpacking sideretro_1.1.6-2.debian.tar.xz
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/30680/tmp/hooks/D01_modify_environment starting
debug: Running on ionos2-i386.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Mar 18 23:44 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/30680/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/30680/tmp/hooks/D02_print_environment starting
I: set
  BASH=/bin/sh
  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
  BASH_ALIASES=()
  BASH_ARGC=()
  BASH_ARGV=()
  BASH_CMDS=()
  BASH_LINENO=([0]="12" [1]="0")
  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
  BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
  BASH_VERSION='5.2.37(1)-release'
  BUILDDIR=/build/reproducible-path
  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
  BUILDUSERNAME=pbuilder2
  BUILD_ARCH=i386
  DEBIAN_FRONTEND=noninteractive
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 '
  DIRSTACK=()
  DISTRIBUTION=unstable
  EUID=0
  FUNCNAME=([0]="Echo" [1]="main")
  GROUPS=()
  HOME=/root
  HOSTNAME=i-capture-the-hostname
  HOSTTYPE=i686
  HOST_ARCH=i386
  IFS=' 	
  '
  INVOCATION_ID=8775ad6b74134d88b518b544cbd48dfa
  LANG=C
  LANGUAGE=de_CH:de
  LC_ALL=C
  LD_LIBRARY_PATH=/usr/lib/libeatmydata
  LD_PRELOAD=libeatmydata.so
  MACHTYPE=i686-pc-linux-gnu
  MAIL=/var/mail/root
  OPTERR=1
  OPTIND=1
  OSTYPE=linux-gnu
  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
  PBCURRENTCOMMANDLINEOPERATION=build
  PBUILDER_OPERATION=build
  PBUILDER_PKGDATADIR=/usr/share/pbuilder
  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
  PBUILDER_SYSCONFDIR=/etc
  PIPESTATUS=([0]="0")
  POSIXLY_CORRECT=y
  PPID=30680
  PS4='+ '
  PWD=/
  SHELL=/bin/bash
  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
  SHLVL=3
  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.k2fQlPC3/pbuilderrc_FgDP --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.k2fQlPC3/b2 --logfile b2/build.log sideretro_1.1.6-2.dsc'
  SUDO_GID=112
  SUDO_UID=107
  SUDO_USER=jenkins
  TERM=unknown
  TZ=/usr/share/zoneinfo/Etc/GMT-14
  UID=0
  USER=root
  _='I: set'
  http_proxy=http://46.16.76.132:3128
I: uname -a
  Linux i-capture-the-hostname 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Mar  4 11:20 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/30680/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: check, cmake, debhelper-compat (= 13), libhts-dev, libsqlite3-dev, meson, pkgconf, python3-sphinx, zlib1g-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19770 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on check; however:
  Package check is not installed.
 pbuilder-satisfydepends-dummy depends on cmake; however:
  Package cmake is not installed.
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on libhts-dev; however:
  Package libhts-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however:
  Package libsqlite3-dev is not installed.
 pbuilder-satisfydepends-dummy depends on meson; however:
  Package meson is not installed.
 pbuilder-satisfydepends-dummy depends on pkgconf; however:
  Package pkgconf is not installed.
 pbuilder-satisfydepends-dummy depends on python3-sphinx; however:
  Package python3-sphinx is not installed.
 pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
  Package zlib1g-dev is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} check{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu76{a} libidn2-0{a} libidn2-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsqlite3-dev{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsubunit-dev{a} libsubunit0{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} nettle-dev{a} ninja-build{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-autocommand{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-defusedxml{a} python3-docutils{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pygments{a} python3-requests{a} python3-roman{a} python3-setuptools{a} python3-snowballstemmer{a} python3-sphinx{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tzdata{a} xml-core{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  bzip2-doc curl javascript-common krb5-locales libarchive-cpio-perl libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix python3-pil wget 
0 packages upgraded, 162 newly installed, 0 to remove and 0 not upgraded.
Need to get 80.2 MB of archives. After unpacking 296 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main i386 libpython3.13-minimal i386 3.13.2-2 [859 kB]
Get: 2 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.7.0-1 [109 kB]
Get: 3 http://deb.debian.org/debian unstable/main i386 python3.13-minimal i386 3.13.2-2 [2262 kB]
Get: 4 http://deb.debian.org/debian unstable/main i386 python3-minimal i386 3.13.2-2 [27.1 kB]
Get: 5 http://deb.debian.org/debian unstable/main i386 media-types all 13.0.0 [29.3 kB]
Get: 6 http://deb.debian.org/debian unstable/main i386 netbase all 6.5 [12.4 kB]
Get: 7 http://deb.debian.org/debian unstable/main i386 tzdata all 2025a-2 [259 kB]
Get: 8 http://deb.debian.org/debian unstable/main i386 libffi8 i386 3.4.7-1 [21.4 kB]
Get: 9 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-6 [69.4 kB]
Get: 10 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-6 [173 kB]
Get: 11 http://deb.debian.org/debian unstable/main i386 libpython3.13-stdlib i386 3.13.2-2 [1960 kB]
Get: 12 http://deb.debian.org/debian unstable/main i386 python3.13 i386 3.13.2-2 [746 kB]
Get: 13 http://deb.debian.org/debian unstable/main i386 libpython3-stdlib i386 3.13.2-2 [10.1 kB]
Get: 14 http://deb.debian.org/debian unstable/main i386 python3 i386 3.13.2-2 [28.1 kB]
Get: 15 http://deb.debian.org/debian unstable/main i386 sgml-base all 1.31 [15.4 kB]
Get: 16 http://deb.debian.org/debian unstable/main i386 libproc2-0 i386 2:4.0.4-7 [66.0 kB]
Get: 17 http://deb.debian.org/debian unstable/main i386 procps i386 2:4.0.4-7 [876 kB]
Get: 18 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB]
Get: 19 http://deb.debian.org/debian unstable/main i386 openssl i386 3.4.1-1 [1432 kB]
Get: 20 http://deb.debian.org/debian unstable/main i386 ca-certificates all 20241223 [164 kB]
Get: 21 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.46-2 [337 kB]
Get: 22 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.46-2 [117 kB]
Get: 23 http://deb.debian.org/debian unstable/main i386 file i386 1:5.46-2 [43.4 kB]
Get: 24 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.23.1-1 [245 kB]
Get: 25 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB]
Get: 26 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-7 [1199 kB]
Get: 27 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.4-5 [96.5 kB]
Get: 28 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB]
Get: 29 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB]
Get: 30 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-7 [301 kB]
Get: 31 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB]
Get: 32 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 33 http://deb.debian.org/debian unstable/main i386 automake all 1:1.17-3 [862 kB]
Get: 34 http://deb.debian.org/debian unstable/main i386 autopoint all 0.23.1-1 [770 kB]
Get: 35 http://deb.debian.org/debian unstable/main i386 libsubunit0 i386 1.4.2-3+b1 [6584 B]
Get: 36 http://deb.debian.org/debian unstable/main i386 libsubunit-dev i386 1.4.2-3+b1 [7624 B]
Get: 37 http://deb.debian.org/debian unstable/main i386 check i386 0.15.2-3 [116 kB]
Get: 38 http://deb.debian.org/debian unstable/main i386 cmake-data all 3.31.6-1 [2268 kB]
Get: 39 http://deb.debian.org/debian unstable/main i386 libicu76 i386 76.1-3 [9893 kB]
Get: 40 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.3+b1 [734 kB]
Get: 41 http://deb.debian.org/debian unstable/main i386 libarchive13t64 i386 3.7.4-1.1 [390 kB]
Get: 42 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b7 [299 kB]
Get: 43 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-5 [35.3 kB]
Get: 44 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.2-1+b1 [24.6 kB]
Get: 45 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-5 [84.3 kB]
Get: 46 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-4 [9600 B]
Get: 47 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-5 [355 kB]
Get: 48 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-5 [149 kB]
Get: 49 http://deb.debian.org/debian unstable/main i386 libunistring5 i386 1.3-1 [458 kB]
Get: 50 http://deb.debian.org/debian unstable/main i386 libidn2-0 i386 2.3.8-2 [110 kB]
Get: 51 http://deb.debian.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-9 [20.8 kB]
Get: 52 http://deb.debian.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-9 [61.2 kB]
Get: 53 http://deb.debian.org/debian unstable/main i386 libldap2 i386 2.6.9+dfsg-2 [206 kB]
Get: 54 http://deb.debian.org/debian unstable/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB]
Get: 55 http://deb.debian.org/debian unstable/main i386 libnghttp3-9 i386 1.8.0-1 [78.7 kB]
Get: 56 http://deb.debian.org/debian unstable/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB]
Get: 57 http://deb.debian.org/debian unstable/main i386 libp11-kit0 i386 0.25.5-3 [423 kB]
Get: 58 http://deb.debian.org/debian unstable/main i386 libtasn1-6 i386 4.20.0-2 [51.6 kB]
Get: 59 http://deb.debian.org/debian unstable/main i386 libgnutls30t64 i386 3.8.9-2 [1462 kB]
Get: 60 http://deb.debian.org/debian unstable/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB]
Get: 61 http://deb.debian.org/debian unstable/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB]
Get: 62 http://deb.debian.org/debian unstable/main i386 libcurl4t64 i386 8.13.0~rc2-1 [426 kB]
Get: 63 http://deb.debian.org/debian unstable/main i386 libjsoncpp26 i386 1.9.6-3 [90.0 kB]
Get: 64 http://deb.debian.org/debian unstable/main i386 librhash1 i386 1.4.5-1 [144 kB]
Get: 65 http://deb.debian.org/debian unstable/main i386 libuv1t64 i386 1.50.0-2 [163 kB]
Get: 66 http://deb.debian.org/debian unstable/main i386 cmake i386 3.31.6-1 [13.1 MB]
Get: 67 http://deb.debian.org/debian unstable/main i386 comerr-dev i386 2.1-1.47.2-1+b1 [56.4 kB]
Get: 68 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 69 http://deb.debian.org/debian unstable/main i386 libtool all 2.5.4-4 [539 kB]
Get: 70 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 71 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 72 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 73 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 74 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB]
Get: 75 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB]
Get: 76 http://deb.debian.org/debian unstable/main i386 gettext i386 0.23.1-1 [1714 kB]
Get: 77 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 78 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 79 http://deb.debian.org/debian unstable/main i386 debhelper all 13.24.1 [920 kB]
Get: 80 http://deb.debian.org/debian unstable/main i386 xml-core all 0.19 [20.1 kB]
Get: 81 http://deb.debian.org/debian unstable/main i386 docutils-common all 0.21.2+dfsg-2 [128 kB]
Get: 82 http://deb.debian.org/debian unstable/main i386 libgssrpc4t64 i386 1.21.3-5 [63.6 kB]
Get: 83 http://deb.debian.org/debian unstable/main i386 libkadm5clnt-mit12 i386 1.21.3-5 [44.2 kB]
Get: 84 http://deb.debian.org/debian unstable/main i386 libkdb5-10t64 i386 1.21.3-5 [45.6 kB]
Get: 85 http://deb.debian.org/debian unstable/main i386 libkadm5srv-mit12 i386 1.21.3-5 [57.9 kB]
Get: 86 http://deb.debian.org/debian unstable/main i386 krb5-multidev i386 1.21.3-5 [126 kB]
Get: 87 http://deb.debian.org/debian unstable/main i386 libbrotli-dev i386 1.1.0-2+b7 [313 kB]
Get: 88 http://deb.debian.org/debian unstable/main i386 libbz2-dev i386 1.0.8-6 [32.1 kB]
Get: 89 http://deb.debian.org/debian unstable/main i386 libngtcp2-16 i386 1.11.0-1 [163 kB]
Get: 90 http://deb.debian.org/debian unstable/main i386 libngtcp2-crypto-gnutls8 i386 1.11.0-1 [29.9 kB]
Get: 91 http://deb.debian.org/debian unstable/main i386 libcurl3t64-gnutls i386 8.13.0~rc2-1 [419 kB]
Get: 92 http://deb.debian.org/debian unstable/main i386 libevent-2.1-7t64 i386 2.1.12-stable-10+b1 [195 kB]
Get: 93 http://deb.debian.org/debian unstable/main i386 libunbound8 i386 1.22.0-1+b1 [633 kB]
Get: 94 http://deb.debian.org/debian unstable/main i386 libgnutls-dane0t64 i386 3.8.9-2 [453 kB]
Get: 95 http://deb.debian.org/debian unstable/main i386 libgnutls-openssl27t64 i386 3.8.9-2 [453 kB]
Get: 96 http://deb.debian.org/debian unstable/main i386 libidn2-dev i386 2.3.8-2 [104 kB]
Get: 97 http://deb.debian.org/debian unstable/main i386 libp11-kit-dev i386 0.25.5-3 [208 kB]
Get: 98 http://deb.debian.org/debian unstable/main i386 libtasn1-6-dev i386 4.20.0-2 [103 kB]
Get: 99 http://deb.debian.org/debian unstable/main i386 libgmpxx4ldbl i386 2:6.3.0+dfsg-3 [329 kB]
Get: 100 http://deb.debian.org/debian unstable/main i386 libgmp-dev i386 2:6.3.0+dfsg-3 [661 kB]
Get: 101 http://deb.debian.org/debian unstable/main i386 nettle-dev i386 3.10.1-1 [1335 kB]
Get: 102 http://deb.debian.org/debian unstable/main i386 libgnutls28-dev i386 3.8.9-2 [1464 kB]
Get: 103 http://deb.debian.org/debian unstable/main i386 libkrb5-dev i386 1.21.3-5 [16.1 kB]
Get: 104 http://deb.debian.org/debian unstable/main i386 libldap-dev i386 2.6.9+dfsg-2 [332 kB]
Get: 105 http://deb.debian.org/debian unstable/main i386 libpkgconf3 i386 1.8.1-4 [38.4 kB]
Get: 106 http://deb.debian.org/debian unstable/main i386 pkgconf-bin i386 1.8.1-4 [30.6 kB]
Get: 107 http://deb.debian.org/debian unstable/main i386 pkgconf i386 1.8.1-4 [26.2 kB]
Get: 108 http://deb.debian.org/debian unstable/main i386 libnghttp2-dev i386 1.64.0-1 [123 kB]
Get: 109 http://deb.debian.org/debian unstable/main i386 libnghttp3-dev i386 1.8.0-1 [104 kB]
Get: 110 http://deb.debian.org/debian unstable/main i386 libngtcp2-crypto-gnutls-dev i386 1.11.0-1 [34.9 kB]
Get: 111 http://deb.debian.org/debian unstable/main i386 libngtcp2-dev i386 1.11.0-1 [215 kB]
Get: 112 http://deb.debian.org/debian unstable/main i386 libpsl-dev i386 0.21.2-1.1+b1 [78.4 kB]
Get: 113 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB]
Get: 114 http://deb.debian.org/debian unstable/main i386 librtmp-dev i386 2.4+20151223.gitfa8646d.1-2+b5 [72.3 kB]
Get: 115 http://deb.debian.org/debian unstable/main i386 libssl-dev i386 3.4.1-1 [2837 kB]
Get: 116 http://deb.debian.org/debian unstable/main i386 libssh2-1-dev i386 1.11.1-1 [407 kB]
Get: 117 http://deb.debian.org/debian unstable/main i386 libzstd-dev i386 1.5.7+dfsg-1 [377 kB]
Get: 118 http://deb.debian.org/debian unstable/main i386 libcurl4-gnutls-dev i386 8.13.0~rc2-1 [554 kB]
Get: 119 http://deb.debian.org/debian unstable/main i386 libdeflate0 i386 1.23-1+b1 [48.4 kB]
Get: 120 http://deb.debian.org/debian unstable/main i386 libdeflate-dev i386 1.23-1+b1 [57.5 kB]
Get: 121 http://deb.debian.org/debian unstable/main i386 libhtscodecs2 i386 1.6.1-2 [70.9 kB]
Get: 122 http://deb.debian.org/debian unstable/main i386 libhts3t64 i386 1.21+ds-1 [506 kB]
Get: 123 http://deb.debian.org/debian unstable/main i386 liblzma-dev i386 5.6.4-1 [335 kB]
Get: 124 http://deb.debian.org/debian unstable/main i386 libhts-dev i386 1.21+ds-1 [1725 kB]
Get: 125 http://deb.debian.org/debian unstable/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 126 http://deb.debian.org/debian unstable/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get: 127 http://deb.debian.org/debian unstable/main i386 libjs-sphinxdoc all 8.1.3-5 [30.5 kB]
Get: 128 http://deb.debian.org/debian unstable/main i386 libjson-perl all 4.10000-1 [87.5 kB]
Get: 129 http://deb.debian.org/debian unstable/main i386 libsqlite3-dev i386 3.46.1-2 [1192 kB]
Get: 130 http://deb.debian.org/debian unstable/main i386 ninja-build i386 1.12.1-1 [153 kB]
Get: 131 http://deb.debian.org/debian unstable/main i386 python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 132 http://deb.debian.org/debian unstable/main i386 python3-more-itertools all 10.6.0-1 [65.3 kB]
Get: 133 http://deb.debian.org/debian unstable/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 134 http://deb.debian.org/debian unstable/main i386 python3-typeguard all 4.4.2-1 [37.3 kB]
Get: 135 http://deb.debian.org/debian unstable/main i386 python3-inflect all 7.3.1-2 [32.4 kB]
Get: 136 http://deb.debian.org/debian unstable/main i386 python3-jaraco.context all 6.0.1-1 [8276 B]
Get: 137 http://deb.debian.org/debian unstable/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 138 http://deb.debian.org/debian unstable/main i386 python3-pkg-resources all 75.8.0-1 [222 kB]
Get: 139 http://deb.debian.org/debian unstable/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 140 http://deb.debian.org/debian unstable/main i386 python3-zipp all 3.21.0-1 [10.6 kB]
Get: 141 http://deb.debian.org/debian unstable/main i386 python3-setuptools all 75.8.0-1 [724 kB]
Get: 142 http://deb.debian.org/debian unstable/main i386 meson all 1.7.0-1 [639 kB]
Get: 143 http://deb.debian.org/debian unstable/main i386 python-babel-localedata all 2.17.0-1 [6050 kB]
Get: 144 http://deb.debian.org/debian unstable/main i386 python3-alabaster all 0.7.16-0.1 [27.9 kB]
Get: 145 http://deb.debian.org/debian unstable/main i386 python3-babel all 2.17.0-1 [117 kB]
Get: 146 http://deb.debian.org/debian unstable/main i386 python3-certifi all 2025.1.31+ds-1 [9652 B]
Get: 147 http://deb.debian.org/debian unstable/main i386 python3-chardet all 5.2.0+dfsg-2 [108 kB]
Get: 148 http://deb.debian.org/debian unstable/main i386 python3-charset-normalizer i386 3.4.1-1+b1 [127 kB]
Get: 149 http://deb.debian.org/debian unstable/main i386 python3-defusedxml all 0.7.1-3 [43.4 kB]
Get: 150 http://deb.debian.org/debian unstable/main i386 python3-roman all 5.0-1 [10.6 kB]
Get: 151 http://deb.debian.org/debian unstable/main i386 python3-docutils all 0.21.2+dfsg-2 [403 kB]
Get: 152 http://deb.debian.org/debian unstable/main i386 python3-idna all 3.10-1 [42.0 kB]
Get: 153 http://deb.debian.org/debian unstable/main i386 python3-imagesize all 1.4.1-1 [6688 B]
Get: 154 http://deb.debian.org/debian unstable/main i386 python3-markupsafe i386 2.1.5-1+b3 [14.0 kB]
Get: 155 http://deb.debian.org/debian unstable/main i386 python3-jinja2 all 3.1.5-2 [107 kB]
Get: 156 http://deb.debian.org/debian unstable/main i386 python3-packaging all 24.2-1 [55.3 kB]
Get: 157 http://deb.debian.org/debian unstable/main i386 python3-pygments all 2.18.0+dfsg-2 [836 kB]
Get: 158 http://deb.debian.org/debian unstable/main i386 python3-urllib3 all 2.3.0-2 [114 kB]
Get: 159 http://deb.debian.org/debian unstable/main i386 python3-requests all 2.32.3+dfsg-4 [72.1 kB]
Get: 160 http://deb.debian.org/debian unstable/main i386 python3-snowballstemmer all 2.2.0-4 [58.0 kB]
Get: 161 http://deb.debian.org/debian unstable/main i386 sphinx-common all 8.1.3-5 [617 kB]
Get: 162 http://deb.debian.org/debian unstable/main i386 python3-sphinx all 8.1.3-5 [468 kB]
Fetched 80.2 MB in 3s (27.5 MB/s)
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Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
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Current default time zone: 'Etc/UTC'
Local time is now:      Tue Mar 18 23:46:20 UTC 2025.
Universal Time is now:  Tue Mar 18 23:46:20 UTC 2025.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

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update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
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done.
Reading package lists...
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 -> Finished parsing the build-deps
I: Building the package
I: user script /srv/workspace/pbuilder/30680/tmp/hooks/A99_set_merged_usr starting
Not re-configuring usrmerge for unstable
I: user script /srv/workspace/pbuilder/30680/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/reproducible-path/sideretro-1.1.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../sideretro_1.1.6-2_source.changes
dpkg-buildpackage: info: source package sideretro
dpkg-buildpackage: info: source version 1.1.6-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Daniela Moreira Mombach <danielamombach@gmail.com>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
 debian/rules clean
dh clean
   dh_clean
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
   dh_auto_configure
	cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/i386-linux-gnu -Dpython.bytecompile=-1
The Meson build system
Version: 1.7.0
Source dir: /build/reproducible-path/sideretro-1.1.6
Build dir: /build/reproducible-path/sideretro-1.1.6/obj-i686-linux-gnu
Build type: native build
Project name: sideRETRO
Project version: 1.1.6
C compiler for the host machine: cc (gcc 14.2.0 "cc (Debian 14.2.0-19) 14.2.0")
C linker for the host machine: cc ld.bfd 2.44
Host machine cpu family: x86
Host machine cpu: i686
Configuring config.h.in using configuration
Library m found: YES
Library dl found: YES
Run-time dependency threads found: YES
Found pkg-config: YES (/usr/bin/pkg-config) 1.8.1
Run-time dependency zlib found: YES 1.3.1
Run-time dependency sqlite3 found: YES 3.46.1
Run-time dependency htslib found: YES 1.21
Run-time dependency check found: YES 0.15.2
Program sphinx-build found: YES (/usr/bin/sphinx-build)
Message: Generate man page alongside the executable
Build targets in project: 5

sideRETRO 1.1.6

  User defined options
    buildtype         : plain
    libdir            : lib/i386-linux-gnu
    localstatedir     : /var
    prefix            : /usr
    python.bytecompile: -1
    sysconfdir        : /etc
    wrap_mode         : nodownload

Found ninja-1.12.1 at /usr/bin/ninja
   dh_auto_build
	cd obj-i686-linux-gnu && LC_ALL=C.UTF-8 ninja -j10 -v
[1/70] /usr/bin/meson --internal vcstagger config.h.in config.h 1.1.6 /build/reproducible-path/sideretro-1.1.6 @version@ '(.*)' git describe --tags --dirty=+
[2/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/chr.c.o -MF src/libsider.a.p/chr.c.o.d -o src/libsider.a.p/chr.c.o -c ../src/chr.c
[3/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/blacklist.c.o -MF src/libsider.a.p/blacklist.c.o.d -o src/libsider.a.p/blacklist.c.o -c ../src/blacklist.c
In file included from ../src/blacklist.c:24:
../src/blacklist.c: In function ‘blacklist_index_dump_from_bed’:
../src/blacklist.c:170:36: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 7 has type ‘long int’ [-Wformat=]
  170 |                         log_debug ("Index blacklist '%s' at %s:%zu-%zu", name,
      |                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  171 |                                         chr_std, entry->chrom_start, entry->chrom_end);
      |                                                  ~~~~~~~~~~~~~~~~~~
      |                                                       |
      |                                                       long int
../src/log.h:38:68: note: in definition of macro ‘log_debug’
   38 | #define log_debug(...) log_log (LOG_DEBUG, __FILENAME__, __LINE__, __VA_ARGS__)
      |                                                                    ^~~~~~~~~~~
../src/blacklist.c:170:66: note: format string is defined here
  170 |                         log_debug ("Index blacklist '%s' at %s:%zu-%zu", name,
      |                                                                ~~^
      |                                                                  |
      |                                                                  unsigned int
      |                                                                %lu
../src/blacklist.c:170:36: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 8 has type ‘long int’ [-Wformat=]
  170 |                         log_debug ("Index blacklist '%s' at %s:%zu-%zu", name,
      |                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  171 |                                         chr_std, entry->chrom_start, entry->chrom_end);
      |                                                                      ~~~~~~~~~~~~~~~~
      |                                                                           |
      |                                                                           long int
../src/log.h:38:68: note: in definition of macro ‘log_debug’
   38 | #define log_debug(...) log_log (LOG_DEBUG, __FILENAME__, __LINE__, __VA_ARGS__)
      |                                                                    ^~~~~~~~~~~
../src/blacklist.c:170:70: note: format string is defined here
  170 |                         log_debug ("Index blacklist '%s' at %s:%zu-%zu", name,
      |                                                                    ~~^
      |                                                                      |
      |                                                                      unsigned int
      |                                                                    %lu
[4/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/array.c.o -MF src/libsider.a.p/array.c.o.d -o src/libsider.a.p/array.c.o -c ../src/array.c
[5/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/bed.c.o -MF src/libsider.a.p/bed.c.o.d -o src/libsider.a.p/bed.c.o -c ../src/bed.c
[6/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/bitree.c.o -MF src/libsider.a.p/bitree.c.o.d -o src/libsider.a.p/bitree.c.o -c ../src/bitree.c
[7/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/correlation.c.o -MF src/libsider.a.p/correlation.c.o.d -o src/libsider.a.p/correlation.c.o -c ../src/correlation.c
[8/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/dbscan.c.o -MF src/libsider.a.p/dbscan.c.o.d -o src/libsider.a.p/dbscan.c.o -c ../src/dbscan.c
[9/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/cluster.c.o -MF src/libsider.a.p/cluster.c.o.d -o src/libsider.a.p/cluster.c.o -c ../src/cluster.c
[10/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/fasta.c.o -MF src/libsider.a.p/fasta.c.o.d -o src/libsider.a.p/fasta.c.o -c ../src/fasta.c
[11/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/exon.c.o -MF src/libsider.a.p/exon.c.o.d -o src/libsider.a.p/exon.c.o -c ../src/exon.c
[12/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/abnormal.c.o -MF src/libsider.a.p/abnormal.c.o.d -o src/libsider.a.p/abnormal.c.o -c ../src/abnormal.c
[13/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/db_merge.c.o -MF src/libsider.a.p/db_merge.c.o.d -o src/libsider.a.p/db_merge.c.o -c ../src/db_merge.c
[14/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/dedup.c.o -MF src/libsider.a.p/dedup.c.o.d -o src/libsider.a.p/dedup.c.o -c ../src/dedup.c
[15/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/gz.c.o -MF src/libsider.a.p/gz.c.o.d -o src/libsider.a.p/gz.c.o -c ../src/gz.c
[16/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/io.c.o -MF src/libsider.a.p/io.c.o.d -o src/libsider.a.p/io.c.o -c ../src/io.c
[17/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/log.c.o -MF src/libsider.a.p/log.c.o.d -o src/libsider.a.p/log.c.o -c ../src/log.c
[18/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/list.c.o -MF src/libsider.a.p/list.c.o.d -o src/libsider.a.p/list.c.o -c ../src/list.c
[19/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/db.c.o -MF src/libsider.a.p/db.c.o.d -o src/libsider.a.p/db.c.o -c ../src/db.c
[20/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/logger.c.o -MF src/libsider.a.p/logger.c.o.d -o src/libsider.a.p/logger.c.o -c ../src/logger.c
[21/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/ibitree.c.o -MF src/libsider.a.p/ibitree.c.o.d -o src/libsider.a.p/ibitree.c.o -c ../src/ibitree.c
[22/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/gff.c.o -MF src/libsider.a.p/gff.c.o.d -o src/libsider.a.p/gff.c.o -c ../src/gff.c
[23/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/make_vcf.c.o -MF src/libsider.a.p/make_vcf.c.o.d -o src/libsider.a.p/make_vcf.c.o -c ../src/make_vcf.c
[24/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/genotype.c.o -MF src/libsider.a.p/genotype.c.o.d -o src/libsider.a.p/genotype.c.o -c ../src/genotype.c
[25/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/hash.c.o -MF src/libsider.a.p/hash.c.o.d -o src/libsider.a.p/hash.c.o -c ../src/hash.c
[26/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/sam.c.o -MF src/libsider.a.p/sam.c.o.d -o src/libsider.a.p/sam.c.o -c ../src/sam.c
[27/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/set.c.o -MF src/libsider.a.p/set.c.o.d -o src/libsider.a.p/set.c.o -c ../src/set.c
[28/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/str.c.o -MF src/libsider.a.p/str.c.o.d -o src/libsider.a.p/str.c.o -c ../src/str.c
[29/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/merge_call.c.o -MF src/libsider.a.p/merge_call.c.o.d -o src/libsider.a.p/merge_call.c.o -c ../src/merge_call.c
[30/70] cc -Isrc/sider.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ src/sider.p/main.c.o -MF src/sider.p/main.c.o.d -o src/sider.p/main.c.o -c ../src/main.c
[31/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/process_sample.c.o -MF src/libsider.a.p/process_sample.c.o.d -o src/libsider.a.p/process_sample.c.o -c ../src/process_sample.c
[32/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/thpool.c.o -MF src/libsider.a.p/thpool.c.o.d -o src/libsider.a.p/thpool.c.o -c ../src/thpool.c
[33/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/retrocopy.c.o -MF src/libsider.a.p/retrocopy.c.o.d -o src/libsider.a.p/retrocopy.c.o -c ../src/retrocopy.c
[34/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/utils.c.o -MF src/libsider.a.p/utils.c.o.d -o src/libsider.a.p/utils.c.o -c ../src/utils.c
[35/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/vcf.c.o -MF src/libsider.a.p/vcf.c.o.d -o src/libsider.a.p/vcf.c.o -c ../src/vcf.c
In file included from ../src/vcf.c:30:
../src/vcf.c: In function ‘vcf_print_body’:
../src/vcf.c:578:67: warning: format ‘%li’ expects argument of type ‘long int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
  578 |                                                         log_warn ("Retrocopy at %s:%li is outside contig range %li",
      |                                                                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  579 |                                                                         b.chr, b.insertion_point, seq->len);
      |                                                                                                   ~~~~~~~~
      |                                                                                                      |
      |                                                                                                      size_t {aka unsigned int}
../src/log.h:40:68: note: in definition of macro ‘log_warn’
   40 | #define log_warn(...)  log_log (LOG_WARN,  __FILENAME__, __LINE__, __VA_ARGS__)
      |                                                                    ^~~~~~~~~~~
../src/vcf.c:578:114: note: format string is defined here
  578 |                                                         log_warn ("Retrocopy at %s:%li is outside contig range %li",
      |                                                                                                                ~~^
      |                                                                                                                  |
      |                                                                                                                  long int
      |                                                                                                                %i
[36/70] cc -Isrc/libsider.a.p -Isrc -I../src -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -msse -mfpmath=sse -pthread -MD -MQ src/libsider.a.p/wrapper.c.o -MF src/libsider.a.p/wrapper.c.o.d -o src/libsider.a.p/wrapper.c.o -c ../src/wrapper.c
[37/70] rm -f src/libsider.a && gcc-ar csrDT src/libsider.a src/libsider.a.p/abnormal.c.o src/libsider.a.p/array.c.o src/libsider.a.p/bed.c.o src/libsider.a.p/bitree.c.o src/libsider.a.p/blacklist.c.o src/libsider.a.p/chr.c.o src/libsider.a.p/cluster.c.o src/libsider.a.p/correlation.c.o src/libsider.a.p/db.c.o src/libsider.a.p/db_merge.c.o src/libsider.a.p/dbscan.c.o src/libsider.a.p/dedup.c.o src/libsider.a.p/exon.c.o src/libsider.a.p/fasta.c.o src/libsider.a.p/genotype.c.o src/libsider.a.p/gff.c.o src/libsider.a.p/gz.c.o src/libsider.a.p/hash.c.o src/libsider.a.p/ibitree.c.o src/libsider.a.p/io.c.o src/libsider.a.p/list.c.o src/libsider.a.p/log.c.o src/libsider.a.p/logger.c.o src/libsider.a.p/make_vcf.c.o src/libsider.a.p/merge_call.c.o src/libsider.a.p/process_sample.c.o src/libsider.a.p/retrocopy.c.o src/libsider.a.p/sam.c.o src/libsider.a.p/set.c.o src/libsider.a.p/str.c.o src/libsider.a.p/thpool.c.o src/libsider.a.p/utils.c.o src/libsider.a.p/vcf.c.o src/libsider.a.p/wrapper.c.o
[38/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_chr.c.o -MF tests/check_sider.p/check_sider_chr.c.o.d -o tests/check_sider.p/check_sider_chr.c.o -c ../tests/check_sider_chr.c
[39/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_blacklist.c.o -MF tests/check_sider.p/check_sider_blacklist.c.o.d -o tests/check_sider.p/check_sider_blacklist.c.o -c ../tests/check_sider_blacklist.c
[40/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_bed.c.o -MF tests/check_sider.p/check_sider_bed.c.o.d -o tests/check_sider.p/check_sider_bed.c.o -c ../tests/check_sider_bed.c
[41/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_correlation.c.o -MF tests/check_sider.p/check_sider_correlation.c.o.d -o tests/check_sider.p/check_sider_correlation.c.o -c ../tests/check_sider_correlation.c
[42/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_abnormal.c.o -MF tests/check_sider.p/check_sider_abnormal.c.o.d -o tests/check_sider.p/check_sider_abnormal.c.o -c ../tests/check_sider_abnormal.c
[43/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_bitree.c.o -MF tests/check_sider.p/check_sider_bitree.c.o.d -o tests/check_sider.p/check_sider_bitree.c.o -c ../tests/check_sider_bitree.c
[44/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_cluster.c.o -MF tests/check_sider.p/check_sider_cluster.c.o.d -o tests/check_sider.p/check_sider_cluster.c.o -c ../tests/check_sider_cluster.c
[45/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_array.c.o -MF tests/check_sider.p/check_sider_array.c.o.d -o tests/check_sider.p/check_sider_array.c.o -c ../tests/check_sider_array.c
[46/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_db_merge.c.o -MF tests/check_sider.p/check_sider_db_merge.c.o.d -o tests/check_sider.p/check_sider_db_merge.c.o -c ../tests/check_sider_db_merge.c
[47/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_dedup.c.o -MF tests/check_sider.p/check_sider_dedup.c.o.d -o tests/check_sider.p/check_sider_dedup.c.o -c ../tests/check_sider_dedup.c
[48/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_dbscan.c.o -MF tests/check_sider.p/check_sider_dbscan.c.o.d -o tests/check_sider.p/check_sider_dbscan.c.o -c ../tests/check_sider_dbscan.c
[49/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_fasta.c.o -MF tests/check_sider.p/check_sider_fasta.c.o.d -o tests/check_sider.p/check_sider_fasta.c.o -c ../tests/check_sider_fasta.c
[50/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_genotype.c.o -MF tests/check_sider.p/check_sider_genotype.c.o.d -o tests/check_sider.p/check_sider_genotype.c.o -c ../tests/check_sider_genotype.c
[51/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_db.c.o -MF tests/check_sider.p/check_sider_db.c.o.d -o tests/check_sider.p/check_sider_db.c.o -c ../tests/check_sider_db.c
[52/70] /usr/bin/sphinx-build -b man /build/reproducible-path/sideretro-1.1.6/docs /build/reproducible-path/sideretro-1.1.6/obj-i686-linux-gnu/docs
Running Sphinx v8.1.3
WARNING: Invalid configuration value found: 'language = None'. Update your configuration to a valid language code. Falling back to 'en' (English).
loading translations [en]... done
Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`.
building [mo]: targets for 0 po files that are out of date
writing output... 
building [man]: all manpages
updating environment: [new config] 8 added, 0 changed, 0 removed
reading sources... [ 12%] authors
reading sources... [ 25%] index
reading sources... [ 38%] install
reading sources... [ 50%] intro
reading sources... [ 62%] method
reading sources... [ 75%] result
reading sources... [ 88%] retrocopy
reading sources... [100%] usage

looking for now-outdated files... none found
pickling environment... done
checking consistency... /build/reproducible-path/sideretro-1.1.6/docs/index.rst: WARNING: document isn't included in any toctree
done
preparing documents... done
copying assets... 
copying assets: done
writing... sider.1 { 
} done
build succeeded, 2 warnings.

The manual pages are in docs.
[53/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_exon.c.o -MF tests/check_sider.p/check_sider_exon.c.o.d -o tests/check_sider.p/check_sider_exon.c.o -c ../tests/check_sider_exon.c
[54/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_io.c.o -MF tests/check_sider.p/check_sider_io.c.o.d -o tests/check_sider.p/check_sider_io.c.o -c ../tests/check_sider_io.c
[55/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_process_sample.c.o -MF tests/check_sider.p/check_sider_process_sample.c.o.d -o tests/check_sider.p/check_sider_process_sample.c.o -c ../tests/check_sider_process_sample.c
[56/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_gff.c.o -MF tests/check_sider.p/check_sider_gff.c.o.d -o tests/check_sider.p/check_sider_gff.c.o -c ../tests/check_sider_gff.c
[57/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_gz.c.o -MF tests/check_sider.p/check_sider_gz.c.o.d -o tests/check_sider.p/check_sider_gz.c.o -c ../tests/check_sider_gz.c
[58/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_retrocopy.c.o -MF tests/check_sider.p/check_sider_retrocopy.c.o.d -o tests/check_sider.p/check_sider_retrocopy.c.o -c ../tests/check_sider_retrocopy.c
[59/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_main.c.o -MF tests/check_sider.p/check_sider_main.c.o.d -o tests/check_sider.p/check_sider_main.c.o -c ../tests/check_sider_main.c
[60/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_ibitree.c.o -MF tests/check_sider.p/check_sider_ibitree.c.o.d -o tests/check_sider.p/check_sider_ibitree.c.o -c ../tests/check_sider_ibitree.c
[61/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_list.c.o -MF tests/check_sider.p/check_sider_list.c.o.d -o tests/check_sider.p/check_sider_list.c.o -c ../tests/check_sider_list.c
[62/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_sam.c.o -MF tests/check_sider.p/check_sider_sam.c.o.d -o tests/check_sider.p/check_sider_sam.c.o -c ../tests/check_sider_sam.c
[63/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_vcf.c.o -MF tests/check_sider.p/check_sider_vcf.c.o.d -o tests/check_sider.p/check_sider_vcf.c.o -c ../tests/check_sider_vcf.c
[64/70] cc  -o src/sider src/sider.p/main.c.o -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--start-group src/libsider.a -pthread /usr/lib/i386-linux-gnu/libsqlite3.so /usr/lib/i386-linux-gnu/libhts.so /usr/lib/i386-linux-gnu/libz.so -lm -ldl -Wl,--end-group
[65/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_str.c.o -MF tests/check_sider.p/check_sider_str.c.o.d -o tests/check_sider.p/check_sider_str.c.o -c ../tests/check_sider_str.c
[66/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_set.c.o -MF tests/check_sider.p/check_sider_set.c.o.d -o tests/check_sider.p/check_sider_set.c.o -c ../tests/check_sider_set.c
[67/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_wrapper.c.o -MF tests/check_sider.p/check_sider_wrapper.c.o.d -o tests/check_sider.p/check_sider_wrapper.c.o -c ../tests/check_sider_wrapper.c
../tests/check_sider_wrapper.c: In function ‘test_xfprintf_fn’:
../tests/check_sider_wrapper.c:281:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  281 |         fread (buf, sizeof (char), str_size, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../tests/check_sider_wrapper.c: In function ‘test_xfflush_fn’:
../tests/check_sider_wrapper.c:180:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  180 |         fread (buf, sizeof (char), str_size, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[68/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_hash.c.o -MF tests/check_sider.p/check_sider_hash.c.o.d -o tests/check_sider.p/check_sider_hash.c.o -c ../tests/check_sider_hash.c
[69/70] cc -Itests/check_sider.p -Itests -I../tests -I. -I.. -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -DHAVE_CONFIG_H -D_GNU_SOURCE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -msse -mfpmath=sse -MD -MQ tests/check_sider.p/check_sider_utils.c.o -MF tests/check_sider.p/check_sider_utils.c.o.d -o tests/check_sider.p/check_sider_utils.c.o -c ../tests/check_sider_utils.c
[70/70] cc  -o tests/check_sider tests/check_sider.p/check_sider_abnormal.c.o tests/check_sider.p/check_sider_array.c.o tests/check_sider.p/check_sider_bed.c.o tests/check_sider.p/check_sider_bitree.c.o tests/check_sider.p/check_sider_blacklist.c.o tests/check_sider.p/check_sider_chr.c.o tests/check_sider.p/check_sider_cluster.c.o tests/check_sider.p/check_sider_correlation.c.o tests/check_sider.p/check_sider_db.c.o tests/check_sider.p/check_sider_db_merge.c.o tests/check_sider.p/check_sider_dbscan.c.o tests/check_sider.p/check_sider_dedup.c.o tests/check_sider.p/check_sider_exon.c.o tests/check_sider.p/check_sider_fasta.c.o tests/check_sider.p/check_sider_genotype.c.o tests/check_sider.p/check_sider_gff.c.o tests/check_sider.p/check_sider_gz.c.o tests/check_sider.p/check_sider_hash.c.o tests/check_sider.p/check_sider_ibitree.c.o tests/check_sider.p/check_sider_io.c.o tests/check_sider.p/check_sider_list.c.o tests/check_sider.p/check_sider_main.c.o tests/check_sider.p/check_sider_process_sample.c.o tests/check_sider.p/check_sider_retrocopy.c.o tests/check_sider.p/check_sider_sam.c.o tests/check_sider.p/check_sider_set.c.o tests/check_sider.p/check_sider_str.c.o tests/check_sider.p/check_sider_utils.c.o tests/check_sider.p/check_sider_vcf.c.o tests/check_sider.p/check_sider_wrapper.c.o -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sideretro-1.1.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--start-group src/libsider.a -pthread /usr/lib/i386-linux-gnu/libsqlite3.so /usr/lib/i386-linux-gnu/libhts.so /usr/lib/i386-linux-gnu/libz.so -lm -ldl /usr/lib/i386-linux-gnu/libcheck_pic.a -lrt /usr/lib/i386-linux-gnu/libsubunit.so -Wl,--end-group
   dh_auto_test
	cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 MESON_TESTTHREADS=10 meson test --verbose
ninja: Entering directory `/build/reproducible-path/sideretro-1.1.6/obj-i686-linux-gnu'
[1/65] Generating config.h with a custom command
1/1 all RUNNING       
>>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=188 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/sideretro-1.1.6/obj-i686-linux-gnu/tests/check_sider
――――――――――――――――――――――――――――――――――――― ✀  ―――――――――――――――――――――――――――――――――――――
Running suite(s): ProcessSample
ok 1 - ../tests/check_sider_process_sample.c:Core:test_sider: Passed
 List
ok 2 - ../tests/check_sider_list.c:Core:test_list_new: Passed
ok 3 - ../tests/check_sider_list.c:Core:test_list_ins_prev: Passed
ok 4 - ../tests/check_sider_list.c:Core:test_list_ins_next: Passed
ok 5 - ../tests/check_sider_list.c:Core:test_list_ins_prev_link: Passed
ok 6 - ../tests/check_sider_list.c:Core:test_list_ins_next_link: Passed
ok 7 - ../tests/check_sider_list.c:Core:test_list_remove: Passed
ok 8 - ../tests/check_sider_list.c:Core:test_list_remove_link: Passed
ok 9 - ../tests/check_sider_list.c:Core:test_list_foreach: Passed
 Hash
ok 10 - ../tests/check_sider_hash.c:Core:test_hash_free: Passed
ok 11 - ../tests/check_sider_hash.c:Core:test_hash_insert: Passed
ok 12 - ../tests/check_sider_hash.c:Core:test_hash_lookup: Passed
ok 13 - ../tests/check_sider_hash.c:Core:test_hash_replace: Passed
ok 14 - ../tests/check_sider_hash.c:Core:test_hash_remove: Passed
ok 15 - ../tests/check_sider_hash.c:Core:test_hash_contains: Passed
ok 16 - ../tests/check_sider_hash.c:Core:test_hash_int: Passed
ok 17 - ../tests/check_sider_hash.c:Core:test_hash_direct: Passed
ok 18 - ../tests/check_sider_hash.c:Core:test_hash_many_insertions: Passed
ok 19 - ../tests/check_sider_hash.c:Misc:test_hash_foreach: Passed
ok 20 - ../tests/check_sider_hash.c:Misc:test_hash_iter: Passed
ok 21 - ../tests/check_sider_hash.c:Misc:test_hash_get_keys_as_list: Passed
ok 22 - ../tests/check_sider_hash.c:Misc:test_hash_get_values_as_list: Passed
ok 23 - ../tests/check_sider_hash.c:Misc:test_hash_get_keys_as_array: Passed
ok 24 - ../tests/check_sider_hash.c:Misc:test_hash_get_values_as_array: Passed
 Array
ok 25 - ../tests/check_sider_array.c:CoreFree:test_array: Passed
ok 26 - ../tests/check_sider_array.c:CoreFree:test_array_uniq: Passed
ok 27 - ../tests/check_sider_array.c:CoreFree:test_array_find_with_equal_fun: Passed
ok 28 - ../tests/check_sider_array.c:CoreNull:test_array_find: Passed
ok 29 - ../tests/check_sider_array.c:CoreNull:test_array_remove: Passed
ok 30 - ../tests/check_sider_array.c:CoreNull:test_array_remove_index: Passed
ok 31 - ../tests/check_sider_array.c:Free:test_array_no_free_segment: Passed
 Utils
ok 32 - ../tests/check_sider_utils.c:Core:test_fequal: Passed
ok 33 - ../tests/check_sider_utils.c:Core:test_equalstring: Passed
ok 34 - ../tests/check_sider_utils.c:Core:test_casequalstring: Passed
ok 35 - ../tests/check_sider_utils.c:Core:test_cmpstringp: Passed
ok 36 - ../tests/check_sider_utils.c:Core:test_casecmpstringp: Passed
ok 37 - ../tests/check_sider_utils.c:Core:test_chomp: Passed
ok 38 - ../tests/check_sider_utils.c:Core:test_trimc: Passed
ok 39 - ../tests/check_sider_utils.c:Core:test_trim: Passed
ok 40 - ../tests/check_sider_utils.c:Core:test_upper: Passed
ok 41 - ../tests/check_sider_utils.c:Core:test_lower: Passed
ok 42 - ../tests/check_sider_utils.c:Core:test_path_dir: Passed
ok 43 - ../tests/check_sider_utils.c:Core:test_path_file: Passed
ok 44 - ../tests/check_sider_utils.c:Core:test_which: Passed
ok 45 - ../tests/check_sider_utils.c:Core:test_exists: Passed
ok 46 - ../tests/check_sider_utils.c:Core:test_xstrdup_concat: Passed
ok 47 - ../tests/check_sider_utils.c:Core:test_xasprintf_concat: Passed
ok 48 - ../tests/check_sider_utils.c:Core:test_mkdir_p: Passed
ok 49 - ../tests/check_sider_utils.c:Core:test_setup_signal: Passed
ok 50 - ../tests/check_sider_utils.c:Core:test_buf_expand: Passed
ok 51 - ../tests/check_sider_utils.c:Core:test_entry_size: Passed
 SAM
ok 52 - ../tests/check_sider_sam.c:Core:test_sam_to_bam: Passed
ok 53 - ../tests/check_sider_sam.c:Core:test_sam_to_bam_fp: Passed
ok 54 - ../tests/check_sider_sam.c:Core:test_sam_test_sorted_order: Passed
 BiTree
ok 55 - ../tests/check_sider_bitree.c:Core:test_bitree: Passed
 IBiTree
ok 56 - ../tests/check_sider_ibitree.c:Core:test_ibitree_insert: Passed
ok 57 - ../tests/check_sider_ibitree.c:Core:test_ibitree_lookup: Passed
ok 58 - ../tests/check_sider_ibitree.c:Core:test_ibitree_lookup_frac: Passed
ok 59 - ../tests/check_sider_ibitree.c:Core:test_ibitree_lookup_either: Passed
 String
ok 60 - ../tests/check_sider_str.c:Core:test_string_new: Passed
ok 61 - ../tests/check_sider_str.c:Core:test_string_sized_new: Passed
ok 62 - ../tests/check_sider_str.c:Core:test_string_set: Passed
ok 63 - ../tests/check_sider_str.c:Core:test_string_concat: Passed
ok 64 - ../tests/check_sider_str.c:Core:test_string_printf: Passed
ok 65 - ../tests/check_sider_str.c:Core:test_string_concat_printf: Passed
ok 66 - ../tests/check_sider_str.c:Core:test_string_free: Passed
ok 67 - ../tests/check_sider_str.c:Core:test_string_clear: Passed
 DB
ok 68 - ../tests/check_sider_db.c:Core:test_db_open: Passed
ok 69 - ../tests/check_sider_db.c:Core:test_db_exec: Passed
ok 70 - ../tests/check_sider_db.c:Core:test_db_prepare: Passed
ok 71 - ../tests/check_sider_db.c:Core:test_db_schema: Passed
ok 72 - ../tests/check_sider_db.c:Abort:test_db_open_abort: Passed
ok 73 - ../tests/check_sider_db.c:Abort:test_db_close_abort: Passed
ok 74 - ../tests/check_sider_db.c:Abort:test_db_exec_abort: Passed
ok 75 - ../tests/check_sider_db.c:Abort:test_db_prepare_abort: Passed
ok 76 - ../tests/check_sider_db.c:Abort:test_db_step_abort: Passed
ok 77 - ../tests/check_sider_db.c:Abort:test_db_reset_abort: Passed
ok 78 - ../tests/check_sider_db.c:Abort:test_db_bind_int_abort: Passed
ok 79 - ../tests/check_sider_db.c:Abort:test_db_bind_int64_abort: Passed
ok 80 - ../tests/check_sider_db.c:Abort:test_db_bind_double_abort: Passed
ok 81 - ../tests/check_sider_db.c:Abort:test_db_bind_text_abort: Passed
ok 82 - ../tests/check_sider_db.c:Abort:test_db_column_int_abort: Passed
ok 83 - ../tests/check_sider_db.c:Abort:test_db_column_int64_abort: Passed
ok 84 - ../tests/check_sider_db.c:Abort:test_db_column_double_abort: Passed
ok 85 - ../tests/check_sider_db.c:Abort:test_db_column_text_abort: Passed
 Chr
ok 86 - ../tests/check_sider_chr.c:Core:test_chr_std_lookup: Passed
 Exon
ok 87 - ../tests/check_sider_exon.c:Core:test_exon_tree_index_dump: Passed
ok 88 - ../tests/check_sider_exon.c:Core:test_exon_tree_lookup_dump: Passed
 Abnormal
ok 89 - ../tests/check_sider_abnormal.c:Core:test_abnormal_filter_sorted: Passed
ok 90 - ../tests/check_sider_abnormal.c:Core:test_abnormal_filter_unsorted: Passed
 GFF
ok 91 - ../tests/check_sider_gff.c:Core:test_gff_header: Passed
ok 92 - ../tests/check_sider_gff.c:Core:test_gff_read: Passed
ok 93 - ../tests/check_sider_gff.c:Core:test_gff_filter: Passed
ok 94 - ../tests/check_sider_gff.c:Core:test_gff_looks_like_gff_file: Passed
ok 95 - ../tests/check_sider_gff.c:Abort:test_open_fatal: Passed
ok 96 - ../tests/check_sider_gff.c:Abort:test_seqname_fatal: Passed
ok 97 - ../tests/check_sider_gff.c:Abort:test_source_fatal: Passed
ok 98 - ../tests/check_sider_gff.c:Abort:test_feature_fatal: Passed
ok 99 - ../tests/check_sider_gff.c:Abort:test_start_fatal: Passed
ok 100 - ../tests/check_sider_gff.c:Abort:test_end_fatal: Passed
ok 101 - ../tests/check_sider_gff.c:Abort:test_score_fatal: Passed
ok 102 - ../tests/check_sider_gff.c:Abort:test_strand_fatal: Passed
ok 103 - ../tests/check_sider_gff.c:Abort:test_frame_fatal: Passed
ok 104 - ../tests/check_sider_gff.c:Abort:test_key_value_fatal: Passed
ok 105 - ../tests/check_sider_gff.c:Abort:test_close_fatal: Passed
 IO
ok 106 - ../tests/check_sider_io.c:Core:test_read_file_lines: Passed
 DBSCAN
ok 107 - ../tests/check_sider_dbscan.c:Core:test_dbscan: Passed
 Cluster
ok 108 - ../tests/check_sider_cluster.c:Core:test_cluster_without_genotype_support: Passed
ok 109 - ../tests/check_sider_cluster.c:Core:test_cluster_with_genotype_support: Passed
 Wrapper
ok 110 - ../tests/check_sider_wrapper.c:Core:test_xmalloc: Passed
ok 111 - ../tests/check_sider_wrapper.c:Core:test_xcalloc: Passed
ok 112 - ../tests/check_sider_wrapper.c:Core:test_xrealloc: Passed
ok 113 - ../tests/check_sider_wrapper.c:Core:test_xstrdup: Passed
ok 114 - ../tests/check_sider_wrapper.c:Core:test_xfree: Passed
ok 115 - ../tests/check_sider_wrapper.c:Core:test_xfopen: Passed
ok 116 - ../tests/check_sider_wrapper.c:Core:test_xfdopen: Passed
ok 117 - ../tests/check_sider_wrapper.c:Core:test_xfclose: Passed
ok 118 - ../tests/check_sider_wrapper.c:Core:test_xfflush: Passed
ok 119 - ../tests/check_sider_wrapper.c:Core:test_xpopen: Passed
ok 120 - ../tests/check_sider_wrapper.c:Core:test_xmkdir: Passed
ok 121 - ../tests/check_sider_wrapper.c:Core:test_xasprintf: Passed
ok 122 - ../tests/check_sider_wrapper.c:Core:test_xfprintf: Passed
ok 123 - ../tests/check_sider_wrapper.c:Core:test_xsigaction: Passed
ok 124 - ../tests/check_sider_wrapper.c:Abort:test_xfopen_rw_abort: Passed
ok 125 - ../tests/check_sider_wrapper.c:Abort:test_xfopen_w_abort: Passed
ok 126 - ../tests/check_sider_wrapper.c:Abort:test_xfopen_r_abort: Passed
ok 127 - ../tests/check_sider_wrapper.c:Abort:test_xfdopen_rw_abort: Passed
ok 128 - ../tests/check_sider_wrapper.c:Abort:test_xfdopen_w_abort: Passed
ok 129 - ../tests/check_sider_wrapper.c:Abort:test_xfdopen_r_abort: Passed
ok 130 - ../tests/check_sider_wrapper.c:Abort:test_xmkdir_abort: Passed
ok 131 - ../tests/check_sider_wrapper.c:Abort:test_xsigaction_abort: Passed
ok 132 - ../tests/check_sider_wrapper.c:Abort:test_xpopen_r_abort: Passed
ok 133 - ../tests/check_sider_wrapper.c:Abort:test_xpopen_w_abort: Passed
 DBMerge
ok 134 - ../tests/check_sider_db_merge.c:Core:test_db_merge: Passed
ok 135 - ../tests/check_sider_db_merge.c:Core:test_db_merge_in_line: Passed
 Set
ok 136 - ../tests/check_sider_set.c:Core:test_set_free: Passed
ok 137 - ../tests/check_sider_set.c:Core:test_set_insert: Passed
ok 138 - ../tests/check_sider_set.c:Core:test_set_remove: Passed
ok 139 - ../tests/check_sider_set.c:Core:test_set_union: Passed
ok 140 - ../tests/check_sider_set.c:Core:test_set_intersection: Passed
ok 141 - ../tests/check_sider_set.c:Core:test_set_difference: Passed
ok 142 - ../tests/check_sider_set.c:Core:test_set_is_subset: Passed
ok 143 - ../tests/check_sider_set.c:Core:test_set_is_equal: Passed
ok 144 - ../tests/check_sider_set.c:Core:test_set_is_member: Passed
 Correlation
ok 145 - ../tests/check_sider_correlation.c:Core:test_pearson: Passed
ok 146 - ../tests/check_sider_correlation.c:Core:test_spearman: Passed
ok 147 - ../tests/check_sider_correlation.c:Core:test_spearman_eq: Passed
ok 148 - ../tests/check_sider_correlation.c:Core:test_spearman_permutation_test: Passed
 BED
ok 149 - ../tests/check_sider_bed.c:Core:test_bed_header: Passed
ok 150 - ../tests/check_sider_bed.c:Core:test_beds: Passed
ok 151 - ../tests/check_sider_bed.c:Core:test_beds: Passed
ok 152 - ../tests/check_sider_bed.c:Core:test_beds: Passed
ok 153 - ../tests/check_sider_bed.c:Core:test_beds: Passed
ok 154 - ../tests/check_sider_bed.c:Core:test_beds: Passed
ok 155 - ../tests/check_sider_bed.c:Core:test_beds: Passed
ok 156 - ../tests/check_sider_bed.c:Core:test_beds: Passed
ok 157 - ../tests/check_sider_bed.c:Core:test_beds: Passed
ok 158 - ../tests/check_sider_bed.c:Core:test_beds: Passed
ok 159 - ../tests/check_sider_bed.c:Core:test_beds: Passed
ok 160 - ../tests/check_sider_bed.c:Abort:test_open_fatal: Passed
ok 161 - ../tests/check_sider_bed.c:Abort:test_chrom_fatal: Passed
ok 162 - ../tests/check_sider_bed.c:Abort:test_chrom_start_fatal: Passed
ok 163 - ../tests/check_sider_bed.c:Abort:test_chrom_end_fatal: Passed
ok 164 - ../tests/check_sider_bed.c:Abort:test_close_fatal: Passed
 Blacklist
ok 165 - ../tests/check_sider_blacklist.c:Core:test_blacklist_index_dump_from_gff: Passed
ok 166 - ../tests/check_sider_blacklist.c:Core:test_blacklist_index_dump_from_bed: Passed
ok 167 - ../tests/check_sider_blacklist.c:Core:test_blacklist_lookup: Passed
 Retrocopy
ok 168 - ../tests/check_sider_retrocopy.c:Core:test_retrocopy: Passed
 Dedup
ok 169 - ../tests/check_sider_dedup.c:Core:test_dedup: Passed
 Genotype
[E::idx_find_and_load] Could not retrieve index file for '/tmp/ponga_unsorted.bam.PfkD9Y'
ok 170 - ../tests/check_sider_genotype.c:Core:test_genotype: Passed
 FASTA
ok 171 - ../tests/check_sider_fasta.c:Core:test_fasta_read: Passed
ok 172 - ../tests/check_sider_fasta.c:Core:test_empty_file: Passed
ok 173 - ../tests/check_sider_fasta.c:Abort:test_open_fatal: Passed
ok 174 - ../tests/check_sider_fasta.c:Abort:test_contig_fatal: Passed
ok 175 - ../tests/check_sider_fasta.c:Abort:test_seq1_fatal: Passed
ok 176 - ../tests/check_sider_fasta.c:Abort:test_seq2_fatal: Passed
ok 177 - ../tests/check_sider_fasta.c:Abort:test_close_fatal: Passed
 VCF
ok 178 - ../tests/check_sider_vcf.c:Core:test_vcf: Passed
 GZ
ok 179 - ../tests/check_sider_gz.c:Core:test_read1: Passed
ok 180 - ../tests/check_sider_gz.c:Core:test_read2: Passed
ok 181 - ../tests/check_sider_gz.c:Core:test_read_long_line: Passed
ok 182 - ../tests/check_sider_gz.c:Abort:test_open_fatal: Passed
ok 183 - ../tests/check_sider_gz.c:Abort:test_close_fatal: Passed
ok 184 - ../tests/check_sider_gz.c:Abort:test_read_fatal1: Passed
ok 185 - ../tests/check_sider_gz.c:Abort:test_read_fatal2: Passed
100%: Checks: 185, Failures: 0, Errors: 0
1..185
――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――
1/1 all OK             13.71s


Ok:                 1   
Expected Fail:      0   
Fail:               0   
Unexpected Pass:    0   
Skipped:            0   
Timeout:            0   

Full log written to /build/reproducible-path/sideretro-1.1.6/obj-i686-linux-gnu/meson-logs/testlog.txt
   create-stamp debian/debhelper-build-stamp
   dh_prep
   dh_auto_install --destdir=debian/sideretro/
	cd obj-i686-linux-gnu && DESTDIR=/build/reproducible-path/sideretro-1.1.6/debian/sideretro LC_ALL=C.UTF-8 ninja install
[1/68] Generating config.h with a custom command
[1/2] Installing files
Installing src/sider to /build/reproducible-path/sideretro-1.1.6/debian/sideretro/usr/bin
Installing docs/sider.1 to /build/reproducible-path/sideretro-1.1.6/debian/sideretro/usr/share/man/man1
   dh_installdocs
   dh_installchangelogs
   dh_installman
   dh_perl
   dh_link
   dh_strip_nondeterminism
   dh_compress
   dh_fixperms
   dh_missing
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
   dh_installdeb
   dh_gencontrol
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'sideretro' in '../sideretro_1.1.6-2_i386.deb'.
dpkg-deb: building package 'sideretro-dbgsym' in '../sideretro-dbgsym_1.1.6-2_i386.deb'.
 dpkg-genbuildinfo --build=binary -O../sideretro_1.1.6-2_i386.buildinfo
 dpkg-genchanges --build=binary -O../sideretro_1.1.6-2_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/30680/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/30680/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/30680 and its subdirectories
I: Current time: Wed Mar 19 13:48:33 +14 2025
I: pbuilder-time-stamp: 1742341713