I: pbuilder: network access will be disabled during build I: Current time: Thu Apr 18 11:35:29 +14 2024 I: pbuilder-time-stamp: 1713389729 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [seer_1.1.4-7.dsc] I: copying [./seer_1.1.4.orig.tar.gz] I: copying [./seer_1.1.4-7.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Nov 6 14:42:46 2022 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./seer_1.1.4-7.dsc: no acceptable signature found dpkg-source: info: extracting seer in seer-1.1.4 dpkg-source: info: unpacking seer_1.1.4.orig.tar.gz dpkg-source: info: unpacking seer_1.1.4-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_lib_location.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying gcc11.patch dpkg-source: info: applying typos.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/62725/tmp/hooks/D01_modify_environment starting debug: Running on ionos2-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Apr 17 21:35 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/62725/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/62725/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=ccb242e0d13e45f6b4dd4924a422b0a8 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=62725 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.laOU6gB3/pbuilderrc_rDds --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.laOU6gB3/b2 --logfile b2/build.log seer_1.1.4-7.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://78.137.99.97:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 16 07:42 /bin -> usr/bin I: user script /srv/workspace/pbuilder/62725/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libarmadillo-dev, libdlib-dev, libhdf5-dev, libgzstream-dev, libboost-dev, libboost-program-options-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19681 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libarmadillo-dev; however: Package libarmadillo-dev is not installed. pbuilder-satisfydepends-dummy depends on libdlib-dev; however: Package libdlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libgzstream-dev; however: Package libgzstream-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarmadillo-dev{a} libarmadillo12{a} libarpack2-dev{a} libarpack2t64{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libbsd0{a} libcom-err2{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdebhelper-perl{a} libdlib-data{a} libdlib-dev{a} libdlib19.1t64{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgssapi-krb5-2{a} libgzstream-dev{a} libgzstream0{a} libhdf5-103-1t64{a} libhdf5-cpp-103-1t64{a} libhdf5-dev{a} libhdf5-fortran-102t64{a} libhdf5-hl-100t64{a} libhdf5-hl-cpp-100t64{a} libhdf5-hl-fortran-100t64{a} libhwloc15{a} libicu72{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} libllvm17t64{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libopencv-core-dev{a} libopencv-core406t64{a} libpciaccess0{a} libpipeline1{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libpthread-stubs0-dev{a} libpython3-dev{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsqlite3-dev{a} libssh2-1t64{a} libssl-dev{a} libsub-override-perl{a} libsuperlu-dev{a} libsuperlu6{a} libsz2{a} libtbb-dev{a} libtbb12{a} libtbbbind-2-5{a} libtbbmalloc2{a} libtool{a} libuchardet0{a} libvulkan1{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxml2{a} libxshmfence1{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} pybind11-dev{a} readline-common{a} sensible-utils{a} tzdata{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libeigen3-dev libhwloc-plugins libldap-common libltdl-dev libmail-sendmail-perl libpng-tools libsasl2-modules lynx mesa-vulkan-drivers publicsuffix wget 0 packages upgraded, 151 newly installed, 0 to remove and 0 not upgraded. Need to get 185 MB of archives. After unpacking 730 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 tzdata all 2024a-2 [255 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 netbase all 6.4 [12.8 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-4 [69.3 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3 [42.9 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-3+b1 [1195 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40-6 [96.7 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 man-db i386 2.12.1-1 [1421 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 media-types all 10.1.0 [26.9 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 autoconf all 2.71-3 [332 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 autopoint all 0.21-14 [496 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-7 [517 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 27 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.191-1+b1 [194 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.9.14+dfsg-1.3+b2 [727 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 debhelper all 13.15.3 [901 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 hdf5-helpers i386 1.10.10+repack-3.3 [23.4 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 libaec0 i386 1.1.3-1 [24.5 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 libsz2 i386 1.1.3-1 [7824 B] Get: 38 http://deb.debian.org/debian unstable/main i386 libaec-dev i386 1.1.3-1 [22.4 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 libblas3 i386 3.12.0-3 [140 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 libgfortran5 i386 14-20240330-1 [735 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 liblapack3 i386 3.12.0-3 [2167 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 libarpack2t64 i386 3.9.1-1.1+b1 [101 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 libsuperlu6 i386 6.0.1+dfsg1-1+b1 [172 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 libarmadillo12 i386 1:12.6.7+dfsg-1+b1 [107 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 libblas-dev i386 3.12.0-3 [152 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 liblapack-dev i386 3.12.0-3 [4400 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 libarpack2-dev i386 3.9.1-1.1+b1 [120 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b3 [314 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.20.1-6+b1 [36.1 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.0-2.4 [20.6 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.20.1-6+b1 [83.2 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-3 [9432 B] Get: 53 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.20.1-6+b1 [360 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.20.1-6+b1 [145 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-6 [20.5 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-6 [60.6 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 libldap-2.5-0 i386 2.5.16+dfsg-2 [198 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 libnghttp2-14 i386 1.61.0-1 [83.7 kB] Get: 59 http://deb.debian.org/debian unstable/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] Get: 61 http://deb.debian.org/debian unstable/main i386 libssh2-1t64 i386 1.11.0-4.1+b2 [225 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 libcurl4t64 i386 8.7.1-2 [477 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 libhdf5-103-1t64 i386 1.10.10+repack-3.3 [1178 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 libhdf5-fortran-102t64 i386 1.10.10+repack-3.3 [98.2 kB] Get: 65 http://deb.debian.org/debian unstable/main i386 libhdf5-hl-100t64 i386 1.10.10+repack-3.3 [74.4 kB] Get: 66 http://deb.debian.org/debian unstable/main i386 libhdf5-hl-fortran-100t64 i386 1.10.10+repack-3.3 [41.8 kB] Get: 67 http://deb.debian.org/debian unstable/main i386 libhdf5-cpp-103-1t64 i386 1.10.10+repack-3.3 [138 kB] Get: 68 http://deb.debian.org/debian unstable/main i386 libhdf5-hl-cpp-100t64 i386 1.10.10+repack-3.3 [21.8 kB] Get: 69 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg-3.1 [915 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 libjpeg62-turbo i386 1:2.1.5-2+b2 [169 kB] Get: 71 http://deb.debian.org/debian unstable/main i386 libjpeg62-turbo-dev i386 1:2.1.5-2+b2 [303 kB] Get: 72 http://deb.debian.org/debian unstable/main i386 libjpeg-dev i386 1:2.1.5-2+b2 [72.1 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 libcurl4-openssl-dev i386 8.7.1-2 [599 kB] Get: 74 http://deb.debian.org/debian unstable/main i386 libssl-dev i386 3.2.1-3 [2744 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 libhdf5-dev i386 1.10.10+repack-3.3 [2772 kB] Get: 76 http://deb.debian.org/debian unstable/main i386 libsuperlu-dev i386 6.0.1+dfsg1-1+b1 [21.8 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 libarmadillo-dev i386 1:12.6.7+dfsg-1+b1 [409 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 libboost1.83-dev i386 1.83.0-2.1+b1 [10.6 MB] Get: 79 http://deb.debian.org/debian unstable/main i386 libboost-dev i386 1.83.0.2+b2 [3840 B] Get: 80 http://deb.debian.org/debian unstable/main i386 libboost-program-options1.83.0 i386 1.83.0-2.1+b1 [358 kB] Get: 81 http://deb.debian.org/debian unstable/main i386 libboost-program-options1.83-dev i386 1.83.0-2.1+b1 [388 kB] Get: 82 http://deb.debian.org/debian unstable/main i386 libboost-program-options-dev i386 1.83.0.2+b2 [3616 B] Get: 83 http://deb.debian.org/debian unstable/main i386 libbsd0 i386 0.12.2-1 [134 kB] Get: 84 http://deb.debian.org/debian unstable/main i386 libdlib-data all 19.24+dfsg-1.1 [63.4 MB] Get: 85 http://deb.debian.org/debian unstable/main i386 libpng16-16t64 i386 1.6.43-5 [286 kB] Get: 86 http://deb.debian.org/debian unstable/main i386 libdlib19.1t64 i386 19.24+dfsg-1.1 [3781 kB] Get: 87 http://deb.debian.org/debian unstable/main i386 libglvnd0 i386 1.7.0-1 [43.7 kB] Get: 88 http://deb.debian.org/debian unstable/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 89 http://deb.debian.org/debian unstable/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 90 http://deb.debian.org/debian unstable/main i386 libxcb1 i386 1.15-1 [148 kB] Get: 91 http://deb.debian.org/debian unstable/main i386 libx11-data all 2:1.8.7-1 [328 kB] Get: 92 http://deb.debian.org/debian unstable/main i386 libx11-6 i386 2:1.8.7-1 [822 kB] Get: 93 http://deb.debian.org/debian unstable/main i386 libdrm-common all 2.4.120-2 [7688 B] Get: 94 http://deb.debian.org/debian unstable/main i386 libdrm2 i386 2.4.120-2 [41.4 kB] Get: 95 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.2-1 [107 kB] Get: 96 http://deb.debian.org/debian unstable/main i386 libglapi-mesa i386 24.0.5-1 [36.7 kB] Get: 97 http://deb.debian.org/debian unstable/main i386 libx11-xcb1 i386 2:1.8.7-1 [232 kB] Get: 98 http://deb.debian.org/debian unstable/main i386 libxcb-dri2-0 i386 1.15-1 [107 kB] Get: 99 http://deb.debian.org/debian unstable/main i386 libxcb-dri3-0 i386 1.15-1 [107 kB] Get: 100 http://deb.debian.org/debian unstable/main i386 libxcb-glx0 i386 1.15-1 [124 kB] Get: 101 http://deb.debian.org/debian unstable/main i386 libxcb-present0 i386 1.15-1 [106 kB] Get: 102 http://deb.debian.org/debian unstable/main i386 libxcb-randr0 i386 1.15-1 [118 kB] Get: 103 http://deb.debian.org/debian unstable/main i386 libxcb-shm0 i386 1.15-1 [106 kB] Get: 104 http://deb.debian.org/debian unstable/main i386 libxcb-sync1 i386 1.15-1 [109 kB] Get: 105 http://deb.debian.org/debian unstable/main i386 libxcb-xfixes0 i386 1.15-1 [110 kB] Get: 106 http://deb.debian.org/debian unstable/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB] Get: 107 http://deb.debian.org/debian unstable/main i386 libxfixes3 i386 1:6.0.0-2 [23.0 kB] Get: 108 http://deb.debian.org/debian unstable/main i386 libxshmfence1 i386 1.3-1 [8976 B] Get: 109 http://deb.debian.org/debian unstable/main i386 libxxf86vm1 i386 1:1.1.4-1+b2 [21.7 kB] Get: 110 http://deb.debian.org/debian unstable/main i386 libvulkan1 i386 1.3.280.0-1 [132 kB] Get: 111 http://deb.debian.org/debian unstable/main i386 libdrm-amdgpu1 i386 2.4.120-2 [24.4 kB] Get: 112 http://deb.debian.org/debian unstable/main i386 libpciaccess0 i386 0.17-3 [53.6 kB] Get: 113 http://deb.debian.org/debian unstable/main i386 libdrm-intel1 i386 2.4.120-2 [66.5 kB] Get: 114 http://deb.debian.org/debian unstable/main i386 libdrm-nouveau2 i386 2.4.120-2 [20.8 kB] Get: 115 http://deb.debian.org/debian unstable/main i386 libdrm-radeon1 i386 2.4.120-2 [23.0 kB] Get: 116 http://deb.debian.org/debian unstable/main i386 libedit2 i386 3.1-20230828-1 [97.5 kB] Get: 117 http://deb.debian.org/debian unstable/main i386 libz3-4 i386 4.8.12-3.1+b2 [7989 kB] Get: 118 http://deb.debian.org/debian unstable/main i386 libllvm17t64 i386 1:17.0.6-9+b2 [27.7 MB] Get: 119 http://deb.debian.org/debian unstable/main i386 libsensors-config all 1:3.6.0-9 [14.6 kB] Get: 120 http://deb.debian.org/debian unstable/main i386 libsensors5 i386 1:3.6.0-9 [35.4 kB] Get: 121 http://deb.debian.org/debian unstable/main i386 libgl1-mesa-dri i386 24.0.5-1 [8455 kB] Get: 122 http://deb.debian.org/debian unstable/main i386 libglx-mesa0 i386 24.0.5-1 [158 kB] Get: 123 http://deb.debian.org/debian unstable/main i386 libglx0 i386 1.7.0-1 [37.8 kB] Get: 124 http://deb.debian.org/debian unstable/main i386 libtbbmalloc2 i386 2021.11.0-2 [48.3 kB] Get: 125 http://deb.debian.org/debian unstable/main i386 libhwloc15 i386 2.10.0-1+b1 [175 kB] Get: 126 http://deb.debian.org/debian unstable/main i386 libtbbbind-2-5 i386 2021.11.0-2 [14.2 kB] Get: 127 http://deb.debian.org/debian unstable/main i386 libtbb12 i386 2021.11.0-2 [89.3 kB] Get: 128 http://deb.debian.org/debian unstable/main i386 libopencv-core406t64 i386 4.6.0+dfsg-13.1+b2 [1067 kB] Get: 129 http://deb.debian.org/debian unstable/main i386 libtbb-dev i386 2021.11.0-2 [193 kB] Get: 130 http://deb.debian.org/debian unstable/main i386 libopencv-core-dev i386 4.6.0+dfsg-13.1+b2 [1794 kB] Get: 131 http://deb.debian.org/debian unstable/main i386 libpng-dev i386 1.6.43-5 [369 kB] Get: 132 http://deb.debian.org/debian unstable/main i386 libsqlite3-dev i386 3.45.3-1 [1173 kB] Get: 133 http://deb.debian.org/debian unstable/main i386 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 134 http://deb.debian.org/debian unstable/main i386 x11proto-dev all 2023.2-1 [598 kB] Get: 135 http://deb.debian.org/debian unstable/main i386 libxau-dev i386 1:1.0.9-1 [23.3 kB] Get: 136 http://deb.debian.org/debian unstable/main i386 libxdmcp-dev i386 1:1.1.2-3 [42.7 kB] Get: 137 http://deb.debian.org/debian unstable/main i386 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 138 http://deb.debian.org/debian unstable/main i386 libpthread-stubs0-dev i386 0.4-1 [5340 B] Get: 139 http://deb.debian.org/debian unstable/main i386 libxcb1-dev i386 1.15-1 [185 kB] Get: 140 http://deb.debian.org/debian unstable/main i386 libx11-dev i386 2:1.8.7-1 [901 kB] Get: 141 http://deb.debian.org/debian unstable/main i386 libpython3.11-minimal i386 3.11.9-1 [817 kB] Get: 142 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-4 [171 kB] Get: 143 http://deb.debian.org/debian unstable/main i386 libpython3.11-stdlib i386 3.11.9-1 [1795 kB] Get: 144 http://deb.debian.org/debian unstable/main i386 libpython3.11t64 i386 3.11.9-1 [1982 kB] Get: 145 http://deb.debian.org/debian unstable/main i386 libexpat1-dev i386 2.6.2-1 [165 kB] Get: 146 http://deb.debian.org/debian unstable/main i386 libpython3.11-dev i386 3.11.9-1 [4632 kB] Get: 147 http://deb.debian.org/debian unstable/main i386 libpython3-dev i386 3.11.8-1 [9600 B] Get: 148 http://deb.debian.org/debian unstable/main i386 pybind11-dev all 2.11.1-2 [191 kB] Get: 149 http://deb.debian.org/debian unstable/main i386 libdlib-dev i386 19.24+dfsg-1.1 [2099 kB] Get: 150 http://deb.debian.org/debian unstable/main i386 libgzstream0 i386 1.5+git20171107.9a20658-2 [7384 B] Get: 151 http://deb.debian.org/debian unstable/main i386 libgzstream-dev i386 1.5+git20171107.9a20658-2 [7576 B] Fetched 185 MB in 3s (59.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19681 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024a-2_all.deb ... Unpacking tzdata (2024a-2) ... Selecting previously unselected package netbase. Preparing to unpack .../001-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../002-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... 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Unpacking liblapack-dev:i386 (3.12.0-3) ... Selecting previously unselected package libarpack2-dev:i386. Preparing to unpack .../046-libarpack2-dev_3.9.1-1.1+b1_i386.deb ... Unpacking libarpack2-dev:i386 (3.9.1-1.1+b1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../047-libbrotli1_1.1.0-2+b3_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b3) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../048-libkrb5support0_1.20.1-6+b1_i386.deb ... Unpacking libkrb5support0:i386 (1.20.1-6+b1) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../049-libcom-err2_1.47.0-2.4_i386.deb ... Unpacking libcom-err2:i386 (1.47.0-2.4) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../050-libk5crypto3_1.20.1-6+b1_i386.deb ... Unpacking libk5crypto3:i386 (1.20.1-6+b1) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../051-libkeyutils1_1.6.3-3_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../052-libkrb5-3_1.20.1-6+b1_i386.deb ... Unpacking libkrb5-3:i386 (1.20.1-6+b1) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../053-libgssapi-krb5-2_1.20.1-6+b1_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.20.1-6+b1) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../054-libsasl2-modules-db_2.1.28+dfsg1-6_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg1-6) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../055-libsasl2-2_2.1.28+dfsg1-6_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg1-6) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../056-libldap-2.5-0_2.5.16+dfsg-2_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.16+dfsg-2) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../057-libnghttp2-14_1.61.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.61.0-1) ... Selecting previously unselected package libpsl5t64:i386. Preparing to unpack .../058-libpsl5t64_0.21.2-1.1_i386.deb ... Unpacking libpsl5t64:i386 (0.21.2-1.1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../059-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:i386. Preparing to unpack .../060-libssh2-1t64_1.11.0-4.1+b2_i386.deb ... Unpacking libssh2-1t64:i386 (1.11.0-4.1+b2) ... Selecting previously unselected package libcurl4t64:i386. Preparing to unpack .../061-libcurl4t64_8.7.1-2_i386.deb ... Unpacking libcurl4t64:i386 (8.7.1-2) ... Selecting previously unselected package libhdf5-103-1t64:i386. Preparing to unpack .../062-libhdf5-103-1t64_1.10.10+repack-3.3_i386.deb ... Unpacking libhdf5-103-1t64:i386 (1.10.10+repack-3.3) ... Selecting previously unselected package libhdf5-fortran-102t64:i386. Preparing to unpack .../063-libhdf5-fortran-102t64_1.10.10+repack-3.3_i386.deb ... Unpacking libhdf5-fortran-102t64:i386 (1.10.10+repack-3.3) ... Selecting previously unselected package libhdf5-hl-100t64:i386. Preparing to unpack .../064-libhdf5-hl-100t64_1.10.10+repack-3.3_i386.deb ... Unpacking libhdf5-hl-100t64:i386 (1.10.10+repack-3.3) ... Selecting previously unselected package libhdf5-hl-fortran-100t64:i386. Preparing to unpack .../065-libhdf5-hl-fortran-100t64_1.10.10+repack-3.3_i386.deb ... Unpacking libhdf5-hl-fortran-100t64:i386 (1.10.10+repack-3.3) ... Selecting previously unselected package libhdf5-cpp-103-1t64:i386. Preparing to unpack .../066-libhdf5-cpp-103-1t64_1.10.10+repack-3.3_i386.deb ... Unpacking libhdf5-cpp-103-1t64:i386 (1.10.10+repack-3.3) ... 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Setting up bsdextrautils (2.40-6) ... Setting up hdf5-helpers (1.10.10+repack-3.3) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglvnd0:i386 (1.7.0-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:i386 (1.1.0-2+b3) ... Setting up libmagic1t64:i386 (1:5.45-3) ... Setting up libboost-program-options1.83-dev:i386 (1.83.0-2.1+b1) ... Setting up libsensors-config (1:3.6.0-9) ... Setting up libpsl5t64:i386 (0.21.2-1.1) ... Setting up libnghttp2-14:i386 (1.61.0-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:i386 (1.47.0-2.4) ... Setting up file (1:5.45-3) ... Setting up libpthread-stubs0-dev:i386 (0.4-1) ... Setting up libaec0:i386 (1.1.3-1) ... Setting up libelf1t64:i386 (0.191-1+b1) ... Setting up libkrb5support0:i386 (1.20.1-6+b1) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-6) ... Setting up tzdata (2024a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Apr 17 21:36:11 UTC 2024. Universal Time is now: Wed Apr 17 21:36:11 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:i386 (4.8.12-3.1+b2) ... Setting up libblas3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libexpat1-dev:i386 (2.6.2-1) ... Setting up libjpeg62-turbo:i386 (1:2.1.5-2+b2) ... Setting up libsqlite3-dev:i386 (3.45.3-1) ... Setting up libboost-program-options-dev:i386 (1.83.0.2+b2) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjpeg62-turbo-dev:i386 (1:2.1.5-2+b2) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libssl-dev:i386 (3.2.1-3) ... Setting up libpng16-16t64:i386 (1.6.43-5) ... Setting up libhwloc15:i386 (2.10.0-1+b1) ... Setting up autopoint (0.21-14) ... Setting up libsensors5:i386 (1:3.6.0-9) ... Setting up libk5crypto3:i386 (1.20.1-6+b1) ... Setting up libglapi-mesa:i386 (24.0.5-1) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-6) ... Setting up libgfortran5:i386 (14-20240330-1) ... Setting up libvulkan1:i386 (1.3.280.0-1) ... Setting up autoconf (2.71-3) ... Setting up libgzstream0:i386 (1.5+git20171107.9a20658-2) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libxshmfence1:i386 (1.3-1) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.4) ... Setting up libkrb5-3:i386 (1.20.1-6+b1) ... Setting up libboost-dev:i386 (1.83.0.2+b2) ... Setting up libpython3.11-minimal:i386 (3.11.9-1) ... Setting up libssh2-1t64:i386 (1.11.0-4.1+b2) ... Setting up libbsd0:i386 (0.12.2-1) ... Setting up libdrm-common (2.4.120-2) ... Setting up readline-common (8.2-4) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3+b2) ... Setting up libdlib-data (19.24+dfsg-1.1) ... Setting up libblas-dev:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up libsz2:i386 (1.1.3-1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2023.2-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up liblapack3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libxcb1:i386 (1.15-1) ... Setting up gettext (0.21-14+b1) ... Setting up libarpack2t64:i386 (3.9.1-1.1+b1) ... Setting up libxcb-xfixes0:i386 (1.15-1) ... Setting up libxau-dev:i386 (1:1.0.9-1) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-glx0:i386 (1.15-1) ... Setting up libedit2:i386 (3.1-20230828-1) ... Setting up libpng-dev:i386 (1.6.43-5) ... Setting up libaec-dev:i386 (1.1.3-1) ... Setting up libjpeg-dev:i386 (1:2.1.5-2+b2) ... Setting up libxcb-shm0:i386 (1.15-1) ... Setting up libsuperlu6:i386 (6.0.1+dfsg1-1+b1) ... Setting up libldap-2.5-0:i386 (2.5.16+dfsg-2) ... Setting up libtbbbind-2-5:i386 (2021.11.0-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libxcb-present0:i386 (1.15-1) ... Setting up libgzstream-dev:i386 (1.5+git20171107.9a20658-2) ... Setting up dh-autoreconf (20) ... Setting up libxdmcp-dev:i386 (1:1.1.2-3) ... Setting up libdlib19.1t64:i386 (19.24+dfsg-1.1) ... Setting up libllvm17t64:i386 (1:17.0.6-9+b2) ... Setting up libxcb-sync1:i386 (1.15-1) ... Setting up liblapack-dev:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up libgssapi-krb5-2:i386 (1.20.1-6+b1) ... Setting up libreadline8t64:i386 (8.2-4) ... Setting up libxcb-dri2-0:i386 (1.15-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libdrm2:i386 (2.4.120-2) ... Setting up groff-base (1.23.0-3+b1) ... Setting up libxcb-randr0:i386 (1.15-1) ... Setting up libx11-6:i386 (2:1.8.7-1) ... Setting up libsuperlu-dev:i386 (6.0.1+dfsg1-1+b1) ... Setting up libarmadillo12 (1:12.6.7+dfsg-1+b1) ... Setting up libdrm-amdgpu1:i386 (2.4.120-2) ... Setting up libxcb-dri3-0:i386 (1.15-1) ... Setting up libx11-xcb1:i386 (2:1.8.7-1) ... Setting up libdrm-nouveau2:i386 (2.4.120-2) ... Setting up libarpack2-dev:i386 (3.9.1-1.1+b1) ... Setting up libxcb1-dev:i386 (1.15-1) ... Setting up libcurl4t64:i386 (8.7.1-2) ... Setting up libdrm-radeon1:i386 (2.4.120-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:i386 (3.11.9-1) ... Setting up libdrm-intel1:i386 (2.4.120-2) ... Setting up libgl1-mesa-dri:i386 (24.0.5-1) ... Setting up libpython3.11t64:i386 (3.11.9-1) ... Setting up libx11-dev:i386 (2:1.8.7-1) ... Setting up libxext6:i386 (2:1.3.4-1+b1) ... Setting up libtbb12:i386 (2021.11.0-2) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxxf86vm1:i386 (1:1.1.4-1+b2) ... Setting up libxfixes3:i386 (1:6.0.0-2) ... Setting up libcurl4-openssl-dev:i386 (8.7.1-2) ... Setting up libpython3.11-dev:i386 (3.11.9-1) ... Setting up libtbb-dev:i386 (2021.11.0-2) ... Setting up libhdf5-103-1t64:i386 (1.10.10+repack-3.3) ... Setting up libhdf5-hl-100t64:i386 (1.10.10+repack-3.3) ... Setting up libglx-mesa0:i386 (24.0.5-1) ... Setting up libpython3-dev:i386 (3.11.8-1) ... Setting up libglx0:i386 (1.7.0-1) ... Setting up libhdf5-cpp-103-1t64:i386 (1.10.10+repack-3.3) ... Setting up libhdf5-fortran-102t64:i386 (1.10.10+repack-3.3) ... Setting up debhelper (13.15.3) ... Setting up pybind11-dev (2.11.1-2) ... Setting up libhdf5-hl-cpp-100t64:i386 (1.10.10+repack-3.3) ... Setting up libopencv-core406t64:i386 (4.6.0+dfsg-13.1+b2) ... Setting up libhdf5-hl-fortran-100t64:i386 (1.10.10+repack-3.3) ... Setting up libhdf5-dev (1.10.10+repack-3.3) ... update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libopencv-core-dev:i386 (4.6.0+dfsg-13.1+b2) ... Setting up libarmadillo-dev (1:12.6.7+dfsg-1+b1) ... Setting up libdlib-dev:i386 (19.24+dfsg-1.1) ... Processing triggers for libc-bin (2.37-17) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/62725/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/62725/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/seer-1.1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seer_1.1.4-7_source.changes dpkg-buildpackage: info: source package seer dpkg-buildpackage: info: source version 1.1.4-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_auto_clean make -j10 clean make[1]: Entering directory '/build/reproducible-path/seer-1.1.4' cd src && make clean make[2]: Entering directory '/build/reproducible-path/seer-1.1.4/src' rm -f *.o ~* seer kmds map_back combineKmers filter_seer make[2]: Leaving directory '/build/reproducible-path/seer-1.1.4/src' cd test && make clean make[2]: Entering directory '/build/reproducible-path/seer-1.1.4/test' rm -f *.o ~* tests_passed make[2]: Leaving directory '/build/reproducible-path/seer-1.1.4/test' make[1]: Leaving directory '/build/reproducible-path/seer-1.1.4' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/seer-1.1.4' dh_auto_build -- LDFLAGS+=-L/usr/lib/i386-linux-gnu/hdf5/serial make -j10 "INSTALL=install --strip-program=true" LDFLAGS\+=-L/usr/lib/i386-linux-gnu/hdf5/serial make[2]: Entering directory '/build/reproducible-path/seer-1.1.4' cd src && make all make[3]: Entering directory '/build/reproducible-path/seer-1.1.4/src' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o sample.o sample.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o significant_kmer.o significant_kmer.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmer.o kmer.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o covar.o covar.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerCommon.o seerCommon.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerErr.o seerErr.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerIO.o seerIO.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerBasicFilter.o seerBasicFilter.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerMain.o seerMain.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerCmdLine.o seerCmdLine.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerStats.o seerStats.cpp In file included from /usr/include/armadillo:26, from kmer.hpp:9, from kmer.cpp:8: /usr/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/erf.hpp:13, from /usr/include/boost/math/distributions/normal.hpp:19, from seercommon.hpp:30, from seerErr.cpp:8: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/erf.hpp:13, from /usr/include/boost/math/distributions/normal.hpp:19, from seercommon.hpp:30, from seerIO.cpp:12: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/erf.hpp:13, from /usr/include/boost/math/distributions/normal.hpp:19, from seercommon.hpp:30, from linkFunction.hpp:6, from seer.hpp:10, from seerCmdLine.cpp:9: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/erf.hpp:13, from /usr/include/boost/math/distributions/normal.hpp:19, from seercommon.hpp:30, from seerBasicFilter.cpp:10: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/erf.hpp:13, from /usr/include/boost/math/distributions/normal.hpp:19, from seercommon.hpp:30, from linkFunction.hpp:6, from seer.hpp:10, from seerMain.cpp:8: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/erf.hpp:13, from /usr/include/boost/math/distributions/normal.hpp:19, from seercommon.hpp:30, from seerCommon.cpp:9: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/erf.hpp:13, from /usr/include/boost/math/distributions/normal.hpp:19, from seercommon.hpp:30, from linkFunction.hpp:6, from seer.hpp:10, from seerStats.cpp:8: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerContinuousAssoc.o seerContinuousAssoc.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerBinaryAssoc.o seerBinaryAssoc.cpp In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/erf.hpp:13, from /usr/include/boost/math/distributions/normal.hpp:19, from seercommon.hpp:30, from linkFunction.hpp:6, from seer.hpp:10, from seerContinuousAssoc.cpp:8: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/erf.hpp:13, from /usr/include/boost/math/distributions/normal.hpp:19, from seercommon.hpp:30, from linkFunction.hpp:6, from seer.hpp:10, from seerBinaryAssoc.cpp:8: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ In file included from /usr/include/armadillo:26, from seercommon.hpp:35: /usr/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ In file included from /usr/include/armadillo:26, from seercommon.hpp:35: /usr/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ In file included from /usr/include/armadillo:26, from seercommon.hpp:35: /usr/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ In file included from /usr/include/armadillo:26, from seercommon.hpp:35: /usr/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ In file included from /usr/include/armadillo:26, from seercommon.hpp:35: /usr/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ In file included from /usr/include/armadillo:26, from seercommon.hpp:35: /usr/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ In file included from /usr/include/armadillo:26, from seercommon.hpp:35: /usr/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o logitFunction.o logitFunction.cpp In file included from /usr/include/armadillo:26, from seercommon.hpp:35: /usr/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/erf.hpp:13, from /usr/include/boost/math/distributions/normal.hpp:19, from seercommon.hpp:30, from linkFunction.hpp:6, from logitFunction.cpp:8: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ In file included from /usr/include/armadillo:26, from seercommon.hpp:35: /usr/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ seerCommon.cpp: In function 'arma::vec dlib_to_arma(const column_vector&)': seerCommon.cpp:174:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'long int' [-Wsign-compare] 174 | for (unsigned int i = 0; i < dlib_vec.nr(); ++i) | ~~^~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o linearFunction.o linearFunction.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmdsMain.o kmdsMain.cpp In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/erf.hpp:13, from /usr/include/boost/math/distributions/normal.hpp:19, from seercommon.hpp:30, from linkFunction.hpp:6, from linearFunction.cpp:8: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/erf.hpp:13, from /usr/include/boost/math/distributions/normal.hpp:19, from seercommon.hpp:30, from kmds.hpp:9, from kmdsMain.cpp:8: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ In file included from /usr/include/armadillo:26, from seercommon.hpp:35: /usr/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ In file included from /usr/include/armadillo:26, from seercommon.hpp:35: /usr/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmdsStruct.o kmdsStruct.cpp In file included from /usr/include/armadillo:26, from seercommon.hpp:35: /usr/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/erf.hpp:13, from /usr/include/boost/math/distributions/normal.hpp:19, from seercommon.hpp:30, from kmds.hpp:9, from kmdsStruct.cpp:8: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmdsCmdLine.o kmdsCmdLine.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o fasta.o fasta.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o mapMain.o mapMain.cpp In file included from /usr/include/armadillo:26, from seercommon.hpp:35: /usr/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o mapCmdLine.o mapCmdLine.cpp /usr/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/erf.hpp:13, from /usr/include/boost/math/distributions/normal.hpp:19, from seercommon.hpp:30, from kmds.hpp:9, from kmdsCmdLine.cpp:8: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o combineInit.o combineInit.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o combineCmdLine.o combineCmdLine.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o combineKmers.o combineKmers.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o filter_seer.o filter_seer.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o filterCmdLine.o filterCmdLine.cpp In file included from /usr/include/armadillo:26, from seercommon.hpp:35: /usr/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial significant_kmer.o filter_seer.o filterCmdLine.o -lboost_program_options -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial -o filter_seer g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial fasta.o significant_kmer.o mapMain.o mapCmdLine.o -lboost_program_options -lpthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial -o map_back g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial combineInit.o combineCmdLine.o combineKmers.o -lgzstream -lz -lboost_program_options -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial -o combineKmers g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial sample.o significant_kmer.o kmer.o covar.o seerCommon.o seerErr.o seerIO.o seerBasicFilter.o seerMain.o seerCmdLine.o seerStats.o seerContinuousAssoc.o seerBinaryAssoc.o logitFunction.o linearFunction.o -lhdf5 -lgzstream -lz -larmadillo -lboost_program_options -llapack -lblas -lpthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial -o seer g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seer-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial sample.o significant_kmer.o kmer.o covar.o seerCommon.o seerErr.o seerIO.o seerBasicFilter.o kmdsMain.o kmdsStruct.o kmdsCmdLine.o -lhdf5 -lgzstream -lz -larmadillo -lboost_program_options -llapack -lblas -lpthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/hdf5/serial -o kmds make[3]: Leaving directory '/build/reproducible-path/seer-1.1.4/src' make[2]: Leaving directory '/build/reproducible-path/seer-1.1.4' make[1]: Leaving directory '/build/reproducible-path/seer-1.1.4' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/seer-1.1.4' if dh_auto_test ; then echo Test passed ; else echo '****************************** TEST FAILED. Please contact upstream *******************************' ; fi make -j10 test make[2]: Entering directory '/build/reproducible-path/seer-1.1.4' cd src && make all make[3]: Entering directory '/build/reproducible-path/seer-1.1.4/src' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/seer-1.1.4/src' cd test && make test make[3]: Entering directory '/build/reproducible-path/seer-1.1.4/test' ./run_test.pl && touch tests_passed PASSED test 1, basic filters PASSED test 2, binary phenotype assocation PASSED test 3, print output PASSED test 4, continuous phenotype assocation PASSED test 5, assocation with population structure PASSED test 6, assocation with covariates PASSED test 7, filter output PASSED test 8, map k-mers make[3]: Leaving directory '/build/reproducible-path/seer-1.1.4/test' make[2]: Leaving directory '/build/reproducible-path/seer-1.1.4' Test passed make[1]: Leaving directory '/build/reproducible-path/seer-1.1.4' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/seer-1.1.4' dh_auto_install -- PREFIX=/build/reproducible-path/seer-1.1.4/debian/seer/usr make -j10 install DESTDIR=/build/reproducible-path/seer-1.1.4/debian/seer AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=/build/reproducible-path/seer-1.1.4/debian/seer/usr make[2]: Entering directory '/build/reproducible-path/seer-1.1.4' cd src && make all make[3]: Entering directory '/build/reproducible-path/seer-1.1.4/src' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/seer-1.1.4/src' cd src && make install make[3]: Entering directory '/build/reproducible-path/seer-1.1.4/src' install -d /build/reproducible-path/seer-1.1.4/debian/seer/usr/bin install seer kmds map_back combineKmers filter_seer /build/reproducible-path/seer-1.1.4/debian/seer/usr/bin make[3]: Leaving directory '/build/reproducible-path/seer-1.1.4/src' make[2]: Leaving directory '/build/reproducible-path/seer-1.1.4' for pl in scripts/*.pl ; do \ plbase=`basename ${pl} .pl` ; \ sed "s+Usage: ./${plbase}.pl+Usage: ${plbase}+" ${pl} > /build/reproducible-path/seer-1.1.4/debian/seer/usr/bin/${plbase} ; \ done # Fix broken usage hint: sed -i "s+Usage: ./hits_to_matrix.pl+Usage: reformat_output+" /build/reproducible-path/seer-1.1.4/debian/seer/usr/bin/reformat_output make[1]: Leaving directory '/build/reproducible-path/seer-1.1.4' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/seer-1.1.4' dh_fixperms find debian -name Makefile -exec chmod -x \{\} \; find debian -name "*.fa" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/seer-1.1.4' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/seer/usr/bin/combineKmers was not linked against libz.so.1 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'seer-dbgsym' in '../seer-dbgsym_1.1.4-7_i386.deb'. dpkg-deb: building package 'seer' in '../seer_1.1.4-7_i386.deb'. dpkg-genbuildinfo --build=binary -O../seer_1.1.4-7_i386.buildinfo dpkg-genchanges --build=binary -O../seer_1.1.4-7_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/62725/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/62725/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/62725 and its subdirectories I: Current time: Thu Apr 18 11:38:04 +14 2024 I: pbuilder-time-stamp: 1713389884