I: pbuilder: network access will be disabled during build
I: Current time: Tue Mar 31 20:20:15 +14 2026
I: pbuilder-time-stamp: 1774938015
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [ray_2.3.1-9.dsc]
I: copying [./ray_2.3.1.orig.tar.bz2]
I: copying [./ray_2.3.1-9.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./ray_2.3.1-9.dsc: unsupported subcommand
dpkg-source: info: extracting ray in ray-2.3.1
dpkg-source: info: unpacking ray_2.3.1.orig.tar.bz2
dpkg-source: info: unpacking ray_2.3.1-9.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying mips.patch
dpkg-source: info: applying gcc-6.patch
dpkg-source: info: applying stable-link-order.patch
dpkg-source: info: applying 2to3.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/115266/tmp/hooks/D01_modify_environment starting
debug: Running on ionos6-i386.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Mar 31 06:20 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/115266/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/115266/tmp/hooks/D02_print_environment starting
I: set
BASH=/bin/sh
BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=()
BASH_ARGV=()
BASH_CMDS=()
BASH_LINENO=([0]="12" [1]="0")
BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
BASH_VERSION='5.2.37(1)-release'
BUILDDIR=/build/reproducible-path
BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
BUILDUSERNAME=pbuilder2
BUILD_ARCH=i386
DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 '
DIRSTACK=()
DISTRIBUTION=unstable
EUID=0
FUNCNAME=([0]="Echo" [1]="main")
GROUPS=()
HOME=/root
HOSTNAME=i-capture-the-hostname
HOSTTYPE=i686
HOST_ARCH=i386
IFS='
'
INVOCATION_ID=b93eb543c98e40a5b14ff565b872a539
LANG=C
LANGUAGE=de_CH:de
LC_ALL=C
LD_LIBRARY_PATH=/usr/lib/libeatmydata
LD_PRELOAD=libeatmydata.so
MACHTYPE=i686-pc-linux-gnu
MAIL=/var/mail/root
OPTERR=1
OPTIND=1
OSTYPE=linux-gnu
PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
PBCURRENTCOMMANDLINEOPERATION=build
PBUILDER_OPERATION=build
PBUILDER_PKGDATADIR=/usr/share/pbuilder
PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
PBUILDER_SYSCONFDIR=/etc
PIPESTATUS=([0]="0")
POSIXLY_CORRECT=y
PPID=115266
PS4='+ '
PWD=/
SHELL=/bin/bash
SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
SHLVL=3
SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qJ1Z1kps/pbuilderrc_ZPDb --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qJ1Z1kps/b2 --logfile b2/build.log ray_2.3.1-9.dsc'
SUDO_GID=112
SUDO_UID=107
SUDO_USER=jenkins
TERM=unknown
TZ=/usr/share/zoneinfo/Etc/GMT-14
UID=0
USER=root
_='I: set'
http_proxy=http://213.165.73.152:3128
I: uname -a
Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/115266/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, mpi-default-dev, pkgconf
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19761 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
Package zlib1g-dev is not installed.
pbuilder-satisfydepends-dummy depends on libbz2-dev; however:
Package libbz2-dev is not installed.
pbuilder-satisfydepends-dummy depends on mpi-default-dev; however:
Package mpi-default-dev is not installed.
pbuilder-satisfydepends-dummy depends on pkgconf; however:
Package pkgconf is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} groff-base{a} hwloc-nox{a} intltool-debian{a} libarchive-zip-perl{a} libbz2-dev{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgfortran-14-dev{a} libgfortran5{a} libhwloc-dev{a} libhwloc15{a} libicu72{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libmpich-dev{a} libmpich12{a} libnuma-dev{a} libnuma1{a} libpipeline1{a} libpkgconf3{a} libslurm42t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} mpi-default-dev{a} mpich{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
bzip2-doc curl libarchive-cpio-perl libhwloc-plugins libmail-sendmail-perl lynx wget
0 packages upgraded, 51 newly installed, 0 to remove and 0 not upgraded.
Need to get 42.3 MB of archives. After unpacking 156 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB]
Get: 2 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB]
Get: 3 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB]
Get: 4 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3+b1 [43.2 kB]
Get: 5 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.23.1-1 [245 kB]
Get: 6 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB]
Get: 7 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-7 [1199 kB]
Get: 8 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.4-5 [96.5 kB]
Get: 9 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB]
Get: 10 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB]
Get: 11 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-5 [301 kB]
Get: 12 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB]
Get: 13 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian unstable/main i386 automake all 1:1.17-3 [862 kB]
Get: 15 http://deb.debian.org/debian unstable/main i386 autopoint all 0.23.1-1 [770 kB]
Get: 16 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 17 http://deb.debian.org/debian unstable/main i386 libtool all 2.5.4-3 [539 kB]
Get: 18 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 21 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 22 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB]
Get: 23 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB]
Get: 24 http://deb.debian.org/debian unstable/main i386 libunistring5 i386 1.3-1 [458 kB]
Get: 25 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-6 [9582 kB]
Get: 26 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB]
Get: 27 http://deb.debian.org/debian unstable/main i386 gettext i386 0.23.1-1 [1714 kB]
Get: 28 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian unstable/main i386 debhelper all 13.24.1 [920 kB]
Get: 31 http://deb.debian.org/debian unstable/main i386 libgfortran5 i386 14.2.0-17 [735 kB]
Get: 32 http://deb.debian.org/debian unstable/main i386 libgfortran-14-dev i386 14.2.0-17 [800 kB]
Get: 33 http://deb.debian.org/debian unstable/main i386 gfortran-14-i686-linux-gnu i386 14.2.0-17 [12.5 MB]
Get: 34 http://deb.debian.org/debian unstable/main i386 gfortran-14 i386 14.2.0-17 [14.0 kB]
Get: 35 http://deb.debian.org/debian unstable/main i386 libhwloc15 i386 2.12.0-1 [177 kB]
Get: 36 http://deb.debian.org/debian unstable/main i386 hwloc-nox i386 2.12.0-1 [232 kB]
Get: 37 http://deb.debian.org/debian unstable/main i386 libbz2-dev i386 1.0.8-6 [32.1 kB]
Get: 38 http://deb.debian.org/debian unstable/main i386 libnuma1 i386 2.0.18-1+b1 [23.9 kB]
Get: 39 http://deb.debian.org/debian unstable/main i386 libnuma-dev i386 2.0.18-1+b1 [38.8 kB]
Get: 40 http://deb.debian.org/debian unstable/main i386 libltdl7 i386 2.5.4-3 [417 kB]
Get: 41 http://deb.debian.org/debian unstable/main i386 libltdl-dev i386 2.5.4-3 [169 kB]
Get: 42 http://deb.debian.org/debian unstable/main i386 libhwloc-dev i386 2.12.0-1 [273 kB]
Get: 43 http://deb.debian.org/debian unstable/main i386 libmpich12 i386 4.2.1-5 [1519 kB]
Get: 44 http://deb.debian.org/debian unstable/main i386 libslurm42t64 i386 24.11.1-1 [754 kB]
Get: 45 http://deb.debian.org/debian unstable/main i386 mpich i386 4.2.1-5 [236 kB]
Get: 46 http://deb.debian.org/debian unstable/main i386 libmpich-dev i386 4.2.1-5 [2503 kB]
Get: 47 http://deb.debian.org/debian unstable/main i386 libpkgconf3 i386 1.8.1-4 [38.4 kB]
Get: 48 http://deb.debian.org/debian unstable/main i386 mpi-default-dev i386 1.18 [3372 B]
Get: 49 http://deb.debian.org/debian unstable/main i386 pkgconf-bin i386 1.8.1-4 [30.6 kB]
Get: 50 http://deb.debian.org/debian unstable/main i386 pkgconf i386 1.8.1-4 [26.2 kB]
Get: 51 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB]
Fetched 42.3 MB in 0s (104 MB/s)
Preconfiguring packages ...
Selecting previously unselected package sensible-utils.
(Reading database ...
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(Reading database ... 19761 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_i386.deb ...
Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:i386.
Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_i386.deb ...
Unpacking libmagic1t64:i386 (1:5.45-3+b1) ...
Selecting previously unselected package file.
Preparing to unpack .../03-file_1%3a5.45-3+b1_i386.deb ...
Unpacking file (1:5.45-3+b1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../04-gettext-base_0.23.1-1_i386.deb ...
Unpacking gettext-base (0.23.1-1) ...
Selecting previously unselected package libuchardet0:i386.
Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_i386.deb ...
Unpacking libuchardet0:i386 (0.0.8-1+b2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../06-groff-base_1.23.0-7_i386.deb ...
Unpacking groff-base (1.23.0-7) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../07-bsdextrautils_2.40.4-5_i386.deb ...
Unpacking bsdextrautils (2.40.4-5) ...
Selecting previously unselected package libpipeline1:i386.
Preparing to unpack .../08-libpipeline1_1.5.8-1_i386.deb ...
Unpacking libpipeline1:i386 (1.5.8-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../09-man-db_2.13.0-1_i386.deb ...
Unpacking man-db (2.13.0-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../10-m4_1.4.19-5_i386.deb ...
Unpacking m4 (1.4.19-5) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../11-autoconf_2.72-3_all.deb ...
Unpacking autoconf (2.72-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../13-automake_1%3a1.17-3_all.deb ...
Unpacking automake (1:1.17-3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ...
Unpacking autopoint (0.23.1-1) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../15-libdebhelper-perl_13.24.1_all.deb ...
Unpacking libdebhelper-perl (13.24.1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../16-libtool_2.5.4-3_all.deb ...
Unpacking libtool (2.5.4-3) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../17-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
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Unpacking dh-strip-nondeterminism (1.14.1-2) ...
Selecting previously unselected package libelf1t64:i386.
Preparing to unpack .../21-libelf1t64_0.192-4_i386.deb ...
Unpacking libelf1t64:i386 (0.192-4) ...
Selecting previously unselected package dwz.
Preparing to unpack .../22-dwz_0.15-1+b1_i386.deb ...
Unpacking dwz (0.15-1+b1) ...
Selecting previously unselected package libunistring5:i386.
Preparing to unpack .../23-libunistring5_1.3-1_i386.deb ...
Unpacking libunistring5:i386 (1.3-1) ...
Selecting previously unselected package libicu72:i386.
Preparing to unpack .../24-libicu72_72.1-6_i386.deb ...
Unpacking libicu72:i386 (72.1-6) ...
Selecting previously unselected package libxml2:i386.
Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_i386.deb ...
Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../26-gettext_0.23.1-1_i386.deb ...
Unpacking gettext (0.23.1-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
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Preparing to unpack .../29-debhelper_13.24.1_all.deb ...
Unpacking debhelper (13.24.1) ...
Selecting previously unselected package libgfortran5:i386.
Preparing to unpack .../30-libgfortran5_14.2.0-17_i386.deb ...
Unpacking libgfortran5:i386 (14.2.0-17) ...
Selecting previously unselected package libgfortran-14-dev:i386.
Preparing to unpack .../31-libgfortran-14-dev_14.2.0-17_i386.deb ...
Unpacking libgfortran-14-dev:i386 (14.2.0-17) ...
Selecting previously unselected package gfortran-14-i686-linux-gnu.
Preparing to unpack .../32-gfortran-14-i686-linux-gnu_14.2.0-17_i386.deb ...
Unpacking gfortran-14-i686-linux-gnu (14.2.0-17) ...
Selecting previously unselected package gfortran-14.
Preparing to unpack .../33-gfortran-14_14.2.0-17_i386.deb ...
Unpacking gfortran-14 (14.2.0-17) ...
Selecting previously unselected package libhwloc15:i386.
Preparing to unpack .../34-libhwloc15_2.12.0-1_i386.deb ...
Unpacking libhwloc15:i386 (2.12.0-1) ...
Selecting previously unselected package hwloc-nox.
Preparing to unpack .../35-hwloc-nox_2.12.0-1_i386.deb ...
Unpacking hwloc-nox (2.12.0-1) ...
Selecting previously unselected package libbz2-dev:i386.
Preparing to unpack .../36-libbz2-dev_1.0.8-6_i386.deb ...
Unpacking libbz2-dev:i386 (1.0.8-6) ...
Selecting previously unselected package libnuma1:i386.
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Unpacking libnuma1:i386 (2.0.18-1+b1) ...
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Unpacking libnuma-dev:i386 (2.0.18-1+b1) ...
Selecting previously unselected package libltdl7:i386.
Preparing to unpack .../39-libltdl7_2.5.4-3_i386.deb ...
Unpacking libltdl7:i386 (2.5.4-3) ...
Selecting previously unselected package libltdl-dev:i386.
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Unpacking libltdl-dev:i386 (2.5.4-3) ...
Selecting previously unselected package libhwloc-dev:i386.
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Unpacking libhwloc-dev:i386 (2.12.0-1) ...
Selecting previously unselected package libmpich12:i386.
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Unpacking libmpich12:i386 (4.2.1-5) ...
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Unpacking libslurm42t64 (24.11.1-1) ...
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Unpacking mpich (4.2.1-5) ...
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Unpacking libmpich-dev:i386 (4.2.1-5) ...
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I: Building the package
I: user script /srv/workspace/pbuilder/115266/tmp/hooks/A99_set_merged_usr starting
Not re-configuring usrmerge for unstable
I: user script /srv/workspace/pbuilder/115266/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/reproducible-path/ray-2.3.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ray_2.3.1-9_source.changes
dpkg-buildpackage: info: source package ray
dpkg-buildpackage: info: source version 2.3.1-9
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/ray-2.3.1'
dh_auto_clean -- CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include " HAVE_LIBZ=y HAVE_LIBBZ2=y
make -j21 clean "CXXFLAGS=-g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include " HAVE_LIBZ=y HAVE_LIBBZ2=y
make[2]: Entering directory '/build/reproducible-path/ray-2.3.1'
make -j21 --jobserver-auth=fifo:/tmp/GMfifo120522 -C RayPlatform clean
make[3]: Entering directory '/build/reproducible-path/ray-2.3.1/RayPlatform'
make[3]: warning: -j21 forced in submake: resetting jobserver mode.
echo CLEAN RayPlatform
CLEAN RayPlatform
rm -f libRayPlatform.a RayPlatform/memory/ReusableMemoryStore.o RayPlatform/memory/MyAllocator.o RayPlatform/memory/RingAllocator.o RayPlatform/memory/allocator.o RayPlatform/memory/DefragmentationGroup.o RayPlatform/memory/ChunkAllocatorWithDefragmentation.o RayPlatform/memory/DefragmentationLane.o RayPlatform/memory/DirtyBuffer.o RayPlatform/routing/ConnectionGraph.o RayPlatform/routing/GraphImplementation.o RayPlatform/routing/GraphImplementationRandom.o RayPlatform/routing/GraphImplementationComplete.o RayPlatform/routing/GraphImplementationDeBruijn.o RayPlatform/routing/GraphImplementationKautz.o RayPlatform/routing/GraphImplementationExperimental.o RayPlatform/routing/GraphImplementationGroup.o RayPlatform/routing/Polytope.o RayPlatform/routing/Torus.o RayPlatform/communication/mpi_tags.o RayPlatform/communication/VirtualCommunicator.o RayPlatform/communication/BufferedData.o RayPlatform/communication/Message.o RayPlatform/communication/MessagesHandler.o RayPlatform/communication/MessageQueue.o RayPlatform/communication/MessageRouter.o RayPlatform/scheduling/VirtualProcessor.o RayPlatform/scheduling/TaskCreator.o RayPlatform/scheduling/SwitchMan.o RayPlatform/core/ComputeCore.o RayPlatform/core/MiniRank.o RayPlatform/core/slave_modes.o RayPlatform/core/OperatingSystem.o RayPlatform/core/master_modes.o RayPlatform/core/statistics.o RayPlatform/plugins/CorePlugin.o RayPlatform/plugins/RegisteredPlugin.o RayPlatform/structures/StaticVector.o RayPlatform/profiling/Profiler.o RayPlatform/profiling/Derivative.o RayPlatform/profiling/TickLogger.o RayPlatform/profiling/TimePrinter.o RayPlatform/profiling/ProcessStatus.o RayPlatform/handlers/MasterModeExecutor.o RayPlatform/handlers/SlaveModeExecutor.o RayPlatform/handlers/MessageTagExecutor.o RayPlatform/cryptography/crypto.o RayPlatform/store/KeyValueStore.o RayPlatform/store/KeyValueStoreItem.o RayPlatform/store/KeyValueStoreRequest.o RayPlatform/actors/Actor.o RayPlatform/actors/Playground.o RayPlatform/files/FileReader.o
make[3]: Leaving directory '/build/reproducible-path/ray-2.3.1/RayPlatform'
echo CLEAN Ray plugins
CLEAN Ray plugins
rm -f Ray PREFIX code/Amos/Amos.o code/CoverageGatherer/CoverageGatherer.o code/CoverageGatherer/CoverageDistribution.o code/EdgePurger/EdgePurger.o code/EdgePurger/EdgePurgerWorker.o code/Example/Example.o code/FusionData/FusionData.o code/FusionTaskCreator/FusionWorker.o code/FusionTaskCreator/FusionTaskCreator.o code/GeneOntology/KeyEncoder.o code/GeneOntology/GeneOntology.o code/GenomeNeighbourhood/GenomeNeighbourhood.o code/GenomeNeighbourhood/Neighbour.o code/GenomeNeighbourhood/NeighbourPair.o code/JoinerTaskCreator/JoinerWorker.o code/JoinerTaskCreator/JoinerTaskCreator.o code/KmerAcademyBuilder/KmerAcademyBuilder.o code/KmerAcademyBuilder/BloomFilter.o code/KmerAcademyBuilder/Kmer.o code/Library/LibraryPeakFinder.o code/Library/LibraryWorker.o code/Library/Library.o code/MachineHelper/MachineHelper.o code/MessageProcessor/MessageProcessor.o code/Mock/Parameters.o code/Mock/common_functions.o code/Mock/Mock.o code/NetworkTest/NetworkTest.o code/Partitioner/Partitioner.o code/PathEvaluator/PathEvaluator.o code/Scaffolder/Scaffolder.o code/Scaffolder/ScaffoldingLink.o code/Scaffolder/SummarizedLink.o code/Scaffolder/ScaffoldingAlgorithm.o code/Scaffolder/ScaffoldingVertex.o code/Scaffolder/ScaffoldingEdge.o code/Searcher/Searcher.o code/Searcher/SearchDirectory.o code/Searcher/ContigSearchEntry.o code/Searcher/ContigHit.o code/Searcher/ColorSet.o code/Searcher/VirtualKmerColor.o code/Searcher/QualityCaller.o code/Searcher/DistributionWriter.o code/Searcher/ColoredPeakFinder.o code/SeedExtender/SeedExtender.o code/SeedExtender/Direction.o code/SeedExtender/VertexMessenger.o code/SeedExtender/ReadFetcher.o code/SeedExtender/BubbleTool.o code/SeedExtender/Chooser.o code/SeedExtender/OpenAssemblerChooser.o code/SeedExtender/TipWatchdog.o code/SeedExtender/NovaEngine.o code/SeedExtender/ExtensionElement.o code/SeedExtender/DepthFirstSearchData.o code/SeedExtender/ExtensionData.o code/SeedingData/GraphPath.o code/SeedingData/SeedWorker.o code/SeedingData/SeedingData.o code/SeedingData/PathHandle.o code/SequencesIndexer/SequencesIndexer.o code/SequencesIndexer/IndexerWorker.o code/SequencesIndexer/PairedRead.o code/SequencesIndexer/ReadAnnotation.o code/SequencesLoader/SequencesLoader.o code/SequencesLoader/Read.o code/SequencesLoader/ArrayOfReads.o code/SequencesLoader/ColorSpaceDecoder.o code/SequencesLoader/ColorSpaceLoader.o code/SequencesLoader/FastaLoader.o code/SequencesLoader/FastaLoaderForReads.o code/SequencesLoader/FastqLoader.o code/SequencesLoader/ExportLoader.o code/SequencesLoader/LoaderInterface.o code/SequencesLoader/LoaderFactory.o code/SequencesLoader/SffLoader.o code/SequencesLoader/Loader.o code/SequencesLoader/BufferedReader.o code/SequencesLoader/ReadHandle.o code/SequencesLoader/BzReader.o code/SequencesLoader/FastqBz2Loader.o code/SequencesLoader/FastaBz2Loader.o code/SequencesLoader/FastqGzLoader.o code/SequencesLoader/FastaGzLoader.o code/SequencesLoader/SequenceFileDetector.o code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o code/SpuriousSeedAnnihilator/AnnihilationWorker.o code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o code/SpuriousSeedAnnihilator/AttributeFetcher.o code/SpuriousSeedAnnihilator/AnnotationFetcher.o code/SpuriousSeedAnnihilator/NanoMerger.o code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o code/SpuriousSeedAnnihilator/GraphExplorer.o code/SpuriousSeedAnnihilator/GraphSearchResult.o code/SpuriousSeedAnnihilator/SeedGossipSolver.o code/SpuriousSeedAnnihilator/GossipAssetManager.o code/Surveyor/Mother.o code/Surveyor/StoreKeeper.o code/Surveyor/GenomeGraphReader.o code/Surveyor/CoalescenceManager.o code/Surveyor/ExperimentVertex.o code/Surveyor/MatrixOwner.o code/TaxonomyViewer/TaxonomyViewer.o code/TaxonomyViewer/GenomeToTaxonLoader.o code/TaxonomyViewer/TaxonomicTreeLoader.o code/TaxonomyViewer/TaxonNameLoader.o code/VerticesExtractor/VerticesExtractor.o code/VerticesExtractor/GridTable.o code/VerticesExtractor/GridTableIterator.o code/VerticesExtractor/Vertex.o code/application_core/Machine.o libRay.a libRayPlatform.a code/application_core/ray_main.o
make[2]: Leaving directory '/build/reproducible-path/ray-2.3.1'
rm -rf install-prefix REFIX
rm -f README.Ray README.RayPlatform RayPlatform/README
make[1]: Leaving directory '/build/reproducible-path/ray-2.3.1'
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/reproducible-path/ray-2.3.1'
dh_auto_build -- MPICXX='i686-linux-gnu-g++' CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include " DEBLDFLAGS="-Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/mpich/lib -lmpichfort -lmpich -lpthread -lhwloc -lpthread" HAVE_LIBBZ2=y HAVE_LIBZ=y
make -j21 "INSTALL=install --strip-program=true" MPICXX=i686-linux-gnu-g\+\+ "CXXFLAGS=-g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include " "DEBLDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/mpich/lib -lmpichfort -lmpich -lpthread -lhwloc -lpthread" HAVE_LIBBZ2=y HAVE_LIBZ=y
make[2]: Entering directory '/build/reproducible-path/ray-2.3.1'
echo " CXX code/application_core/ray_main.o"
echo " CXX code/Amos/Amos.o"
echo " CXX code/CoverageGatherer/CoverageGatherer.o"
echo " CXX code/CoverageGatherer/CoverageDistribution.o"
CXX code/application_core/ray_main.o
echo " CXX code/EdgePurger/EdgePurger.o"
CXX code/Amos/Amos.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/application_core/ray_main.cpp -o code/application_core/ray_main.o
CXX code/CoverageGatherer/CoverageGatherer.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Amos/Amos.cpp -o code/Amos/Amos.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/CoverageGatherer/CoverageGatherer.cpp -o code/CoverageGatherer/CoverageGatherer.o
CXX code/CoverageGatherer/CoverageDistribution.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/CoverageGatherer/CoverageDistribution.cpp -o code/CoverageGatherer/CoverageDistribution.o
echo " CXX code/EdgePurger/EdgePurgerWorker.o"
CXX code/EdgePurger/EdgePurger.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/EdgePurger/EdgePurger.cpp -o code/EdgePurger/EdgePurger.o
echo " CXX code/Example/Example.o"
echo " CXX code/FusionData/FusionData.o"
CXX code/EdgePurger/EdgePurgerWorker.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/EdgePurger/EdgePurgerWorker.cpp -o code/EdgePurger/EdgePurgerWorker.o
echo " CXX code/FusionTaskCreator/FusionWorker.o"
CXX code/Example/Example.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Example/Example.cpp -o code/Example/Example.o
CXX code/FusionData/FusionData.o
echo " CXX code/FusionTaskCreator/FusionTaskCreator.o"
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/FusionData/FusionData.cpp -o code/FusionData/FusionData.o
CXX code/FusionTaskCreator/FusionWorker.o
echo " CXX code/GeneOntology/KeyEncoder.o"
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/FusionTaskCreator/FusionWorker.cpp -o code/FusionTaskCreator/FusionWorker.o
CXX code/FusionTaskCreator/FusionTaskCreator.o
echo " CXX code/GeneOntology/GeneOntology.o"
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/FusionTaskCreator/FusionTaskCreator.cpp -o code/FusionTaskCreator/FusionTaskCreator.o
CXX code/GeneOntology/KeyEncoder.o
echo " CXX code/GenomeNeighbourhood/GenomeNeighbourhood.o"
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GeneOntology/KeyEncoder.cpp -o code/GeneOntology/KeyEncoder.o
CXX code/GeneOntology/GeneOntology.o
echo " CXX code/GenomeNeighbourhood/Neighbour.o"
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GeneOntology/GeneOntology.cpp -o code/GeneOntology/GeneOntology.o
CXX code/GenomeNeighbourhood/GenomeNeighbourhood.o
echo " CXX code/GenomeNeighbourhood/NeighbourPair.o"
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GenomeNeighbourhood/GenomeNeighbourhood.cpp -o code/GenomeNeighbourhood/GenomeNeighbourhood.o
echo " CXX code/JoinerTaskCreator/JoinerWorker.o"
CXX code/GenomeNeighbourhood/Neighbour.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GenomeNeighbourhood/Neighbour.cpp -o code/GenomeNeighbourhood/Neighbour.o
echo " CXX code/JoinerTaskCreator/JoinerTaskCreator.o"
CXX code/GenomeNeighbourhood/NeighbourPair.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GenomeNeighbourhood/NeighbourPair.cpp -o code/GenomeNeighbourhood/NeighbourPair.o
CXX code/JoinerTaskCreator/JoinerWorker.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/JoinerTaskCreator/JoinerWorker.cpp -o code/JoinerTaskCreator/JoinerWorker.o
echo " CXX code/KmerAcademyBuilder/KmerAcademyBuilder.o"
CXX code/JoinerTaskCreator/JoinerTaskCreator.o
echo " CXX code/KmerAcademyBuilder/BloomFilter.o"
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/JoinerTaskCreator/JoinerTaskCreator.cpp -o code/JoinerTaskCreator/JoinerTaskCreator.o
echo " CXX code/KmerAcademyBuilder/Kmer.o"
CXX code/KmerAcademyBuilder/KmerAcademyBuilder.o
CXX code/KmerAcademyBuilder/BloomFilter.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/KmerAcademyBuilder/KmerAcademyBuilder.cpp -o code/KmerAcademyBuilder/KmerAcademyBuilder.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/KmerAcademyBuilder/BloomFilter.cpp -o code/KmerAcademyBuilder/BloomFilter.o
CXX code/KmerAcademyBuilder/Kmer.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/KmerAcademyBuilder/Kmer.cpp -o code/KmerAcademyBuilder/Kmer.o
echo " CXX code/Library/LibraryPeakFinder.o"
CXX code/Library/LibraryPeakFinder.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Library/LibraryPeakFinder.cpp -o code/Library/LibraryPeakFinder.o
echo " CXX code/Library/LibraryWorker.o"
CXX code/Library/LibraryWorker.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Library/LibraryWorker.cpp -o code/Library/LibraryWorker.o
echo " CXX code/Library/Library.o"
CXX code/Library/Library.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Library/Library.cpp -o code/Library/Library.o
echo " CXX code/MachineHelper/MachineHelper.o"
CXX code/MachineHelper/MachineHelper.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/MachineHelper/MachineHelper.cpp -o code/MachineHelper/MachineHelper.o
echo " CXX code/MessageProcessor/MessageProcessor.o"
CXX code/MessageProcessor/MessageProcessor.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/MessageProcessor/MessageProcessor.cpp -o code/MessageProcessor/MessageProcessor.o
echo " CXX code/Mock/Parameters.o"
CXX code/Mock/Parameters.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Mock/Parameters.cpp -o code/Mock/Parameters.o
echo " CXX code/Mock/common_functions.o"
CXX code/Mock/common_functions.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Mock/common_functions.cpp -o code/Mock/common_functions.o
echo " CXX code/Mock/Mock.o"
CXX code/Mock/Mock.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Mock/Mock.cpp -o code/Mock/Mock.o
echo " CXX code/NetworkTest/NetworkTest.o"
CXX code/NetworkTest/NetworkTest.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/NetworkTest/NetworkTest.cpp -o code/NetworkTest/NetworkTest.o
echo " CXX code/Partitioner/Partitioner.o"
CXX code/Partitioner/Partitioner.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Partitioner/Partitioner.cpp -o code/Partitioner/Partitioner.o
echo " CXX code/PathEvaluator/PathEvaluator.o"
CXX code/PathEvaluator/PathEvaluator.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/PathEvaluator/PathEvaluator.cpp -o code/PathEvaluator/PathEvaluator.o
echo " CXX code/Scaffolder/Scaffolder.o"
CXX code/Scaffolder/Scaffolder.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/Scaffolder.cpp -o code/Scaffolder/Scaffolder.o
echo " CXX code/Scaffolder/ScaffoldingLink.o"
CXX code/Scaffolder/ScaffoldingLink.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/ScaffoldingLink.cpp -o code/Scaffolder/ScaffoldingLink.o
echo " CXX code/Scaffolder/SummarizedLink.o"
CXX code/Scaffolder/SummarizedLink.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/SummarizedLink.cpp -o code/Scaffolder/SummarizedLink.o
echo " CXX code/Scaffolder/ScaffoldingAlgorithm.o"
CXX code/Scaffolder/ScaffoldingAlgorithm.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/ScaffoldingAlgorithm.cpp -o code/Scaffolder/ScaffoldingAlgorithm.o
echo " CXX code/Scaffolder/ScaffoldingVertex.o"
CXX code/Scaffolder/ScaffoldingVertex.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/ScaffoldingVertex.cpp -o code/Scaffolder/ScaffoldingVertex.o
echo " CXX code/Scaffolder/ScaffoldingEdge.o"
CXX code/Scaffolder/ScaffoldingEdge.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/ScaffoldingEdge.cpp -o code/Scaffolder/ScaffoldingEdge.o
echo " CXX code/Searcher/Searcher.o"
CXX code/Searcher/Searcher.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/Searcher.cpp -o code/Searcher/Searcher.o
echo " CXX code/Searcher/SearchDirectory.o"
CXX code/Searcher/SearchDirectory.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/SearchDirectory.cpp -o code/Searcher/SearchDirectory.o
echo " CXX code/Searcher/ContigSearchEntry.o"
echo " CXX code/Searcher/ContigHit.o"
CXX code/Searcher/ContigSearchEntry.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ContigSearchEntry.cpp -o code/Searcher/ContigSearchEntry.o
CXX code/Searcher/ContigHit.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ContigHit.cpp -o code/Searcher/ContigHit.o
echo " CXX code/Searcher/ColorSet.o"
CXX code/Searcher/ColorSet.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ColorSet.cpp -o code/Searcher/ColorSet.o
echo " CXX code/Searcher/VirtualKmerColor.o"
CXX code/Searcher/VirtualKmerColor.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/VirtualKmerColor.cpp -o code/Searcher/VirtualKmerColor.o
echo " CXX code/Searcher/QualityCaller.o"
CXX code/Searcher/QualityCaller.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/QualityCaller.cpp -o code/Searcher/QualityCaller.o
echo " CXX code/Searcher/DistributionWriter.o"
CXX code/Searcher/DistributionWriter.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/DistributionWriter.cpp -o code/Searcher/DistributionWriter.o
echo " CXX code/Searcher/ColoredPeakFinder.o"
CXX code/Searcher/ColoredPeakFinder.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ColoredPeakFinder.cpp -o code/Searcher/ColoredPeakFinder.o
echo " CXX code/SeedExtender/SeedExtender.o"
CXX code/SeedExtender/SeedExtender.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/SeedExtender.cpp -o code/SeedExtender/SeedExtender.o
code/Searcher/SearchDirectory.cpp: In member function 'void SearchDirectory::readLineFromFile(char*, int)':
code/Searcher/SearchDirectory.cpp:320:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
320 | fgets(line,length,m_currentFileStream);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
echo " CXX code/SeedExtender/Direction.o"
CXX code/SeedExtender/Direction.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/Direction.cpp -o code/SeedExtender/Direction.o
echo " CXX code/SeedExtender/VertexMessenger.o"
CXX code/SeedExtender/VertexMessenger.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/VertexMessenger.cpp -o code/SeedExtender/VertexMessenger.o
echo " CXX code/SeedExtender/ReadFetcher.o"
CXX code/SeedExtender/ReadFetcher.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/ReadFetcher.cpp -o code/SeedExtender/ReadFetcher.o
echo " CXX code/SeedExtender/BubbleTool.o"
CXX code/SeedExtender/BubbleTool.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/BubbleTool.cpp -o code/SeedExtender/BubbleTool.o
echo " CXX code/SeedExtender/Chooser.o"
CXX code/SeedExtender/Chooser.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/Chooser.cpp -o code/SeedExtender/Chooser.o
echo " CXX code/SeedExtender/OpenAssemblerChooser.o"
CXX code/SeedExtender/OpenAssemblerChooser.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/OpenAssemblerChooser.cpp -o code/SeedExtender/OpenAssemblerChooser.o
echo " CXX code/SeedExtender/TipWatchdog.o"
CXX code/SeedExtender/TipWatchdog.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/TipWatchdog.cpp -o code/SeedExtender/TipWatchdog.o
echo " CXX code/SeedExtender/NovaEngine.o"
CXX code/SeedExtender/NovaEngine.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/NovaEngine.cpp -o code/SeedExtender/NovaEngine.o
echo " CXX code/SeedExtender/ExtensionElement.o"
CXX code/SeedExtender/ExtensionElement.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/ExtensionElement.cpp -o code/SeedExtender/ExtensionElement.o
echo " CXX code/SeedExtender/DepthFirstSearchData.o"
CXX code/SeedExtender/DepthFirstSearchData.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/DepthFirstSearchData.cpp -o code/SeedExtender/DepthFirstSearchData.o
echo " CXX code/SeedExtender/ExtensionData.o"
CXX code/SeedExtender/ExtensionData.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/ExtensionData.cpp -o code/SeedExtender/ExtensionData.o
echo " CXX code/SeedingData/GraphPath.o"
CXX code/SeedingData/GraphPath.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/GraphPath.cpp -o code/SeedingData/GraphPath.o
echo " CXX code/SeedingData/SeedWorker.o"
CXX code/SeedingData/SeedWorker.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/SeedWorker.cpp -o code/SeedingData/SeedWorker.o
echo " CXX code/SeedingData/SeedingData.o"
CXX code/SeedingData/SeedingData.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/SeedingData.cpp -o code/SeedingData/SeedingData.o
echo " CXX code/SeedingData/PathHandle.o"
CXX code/SeedingData/PathHandle.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/PathHandle.cpp -o code/SeedingData/PathHandle.o
echo " CXX code/SequencesIndexer/SequencesIndexer.o"
CXX code/SequencesIndexer/SequencesIndexer.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/SequencesIndexer.cpp -o code/SequencesIndexer/SequencesIndexer.o
echo " CXX code/SequencesIndexer/IndexerWorker.o"
CXX code/SequencesIndexer/IndexerWorker.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/IndexerWorker.cpp -o code/SequencesIndexer/IndexerWorker.o
echo " CXX code/SequencesIndexer/PairedRead.o"
CXX code/SequencesIndexer/PairedRead.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/PairedRead.cpp -o code/SequencesIndexer/PairedRead.o
echo " CXX code/SequencesIndexer/ReadAnnotation.o"
CXX code/SequencesIndexer/ReadAnnotation.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/ReadAnnotation.cpp -o code/SequencesIndexer/ReadAnnotation.o
echo " CXX code/SequencesLoader/SequencesLoader.o"
CXX code/SequencesLoader/SequencesLoader.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/SequencesLoader.cpp -o code/SequencesLoader/SequencesLoader.o
echo " CXX code/SequencesLoader/Read.o"
CXX code/SequencesLoader/Read.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/Read.cpp -o code/SequencesLoader/Read.o
echo " CXX code/SequencesLoader/ArrayOfReads.o"
CXX code/SequencesLoader/ArrayOfReads.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ArrayOfReads.cpp -o code/SequencesLoader/ArrayOfReads.o
echo " CXX code/SequencesLoader/ColorSpaceDecoder.o"
CXX code/SequencesLoader/ColorSpaceDecoder.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ColorSpaceDecoder.cpp -o code/SequencesLoader/ColorSpaceDecoder.o
echo " CXX code/SequencesLoader/ColorSpaceLoader.o"
CXX code/SequencesLoader/ColorSpaceLoader.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ColorSpaceLoader.cpp -o code/SequencesLoader/ColorSpaceLoader.o
echo " CXX code/SequencesLoader/FastaLoader.o"
CXX code/SequencesLoader/FastaLoader.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastaLoader.cpp -o code/SequencesLoader/FastaLoader.o
echo " CXX code/SequencesLoader/FastaLoaderForReads.o"
CXX code/SequencesLoader/FastaLoaderForReads.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastaLoaderForReads.cpp -o code/SequencesLoader/FastaLoaderForReads.o
echo " CXX code/SequencesLoader/FastqLoader.o"
CXX code/SequencesLoader/FastqLoader.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastqLoader.cpp -o code/SequencesLoader/FastqLoader.o
echo " CXX code/SequencesLoader/ExportLoader.o"
CXX code/SequencesLoader/ExportLoader.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ExportLoader.cpp -o code/SequencesLoader/ExportLoader.o
echo " CXX code/SequencesLoader/LoaderInterface.o"
CXX code/SequencesLoader/LoaderInterface.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/LoaderInterface.cpp -o code/SequencesLoader/LoaderInterface.o
echo " CXX code/SequencesLoader/LoaderFactory.o"
CXX code/SequencesLoader/LoaderFactory.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/LoaderFactory.cpp -o code/SequencesLoader/LoaderFactory.o
echo " CXX code/SequencesLoader/SffLoader.o"
CXX code/SequencesLoader/SffLoader.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/SffLoader.cpp -o code/SequencesLoader/SffLoader.o
echo " CXX code/SequencesLoader/Loader.o"
CXX code/SequencesLoader/Loader.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/Loader.cpp -o code/SequencesLoader/Loader.o
echo " CXX code/SequencesLoader/BufferedReader.o"
CXX code/SequencesLoader/BufferedReader.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/BufferedReader.cpp -o code/SequencesLoader/BufferedReader.o
echo " CXX code/SequencesLoader/ReadHandle.o"
CXX code/SequencesLoader/ReadHandle.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ReadHandle.cpp -o code/SequencesLoader/ReadHandle.o
echo " CXX code/SequencesLoader/BzReader.o"
CXX code/SequencesLoader/BzReader.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/BzReader.cpp -o code/SequencesLoader/BzReader.o
echo " CXX code/SequencesLoader/FastqBz2Loader.o"
CXX code/SequencesLoader/FastqBz2Loader.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastqBz2Loader.cpp -o code/SequencesLoader/FastqBz2Loader.o
echo " CXX code/SequencesLoader/FastaBz2Loader.o"
CXX code/SequencesLoader/FastaBz2Loader.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastaBz2Loader.cpp -o code/SequencesLoader/FastaBz2Loader.o
echo " CXX code/SequencesLoader/FastqGzLoader.o"
CXX code/SequencesLoader/FastqGzLoader.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastqGzLoader.cpp -o code/SequencesLoader/FastqGzLoader.o
echo " CXX code/SequencesLoader/FastaGzLoader.o"
CXX code/SequencesLoader/FastaGzLoader.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastaGzLoader.cpp -o code/SequencesLoader/FastaGzLoader.o
echo " CXX code/SequencesLoader/SequenceFileDetector.o"
CXX code/SequencesLoader/SequenceFileDetector.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/SequenceFileDetector.cpp -o code/SequencesLoader/SequenceFileDetector.o
echo " CXX code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o"
CXX code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.cpp -o code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o
echo " CXX code/SpuriousSeedAnnihilator/AnnihilationWorker.o"
CXX code/SpuriousSeedAnnihilator/AnnihilationWorker.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/AnnihilationWorker.cpp -o code/SpuriousSeedAnnihilator/AnnihilationWorker.o
echo " CXX code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o"
CXX code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.cpp -o code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o
echo " CXX code/SpuriousSeedAnnihilator/AttributeFetcher.o"
CXX code/SpuriousSeedAnnihilator/AttributeFetcher.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/AttributeFetcher.cpp -o code/SpuriousSeedAnnihilator/AttributeFetcher.o
echo " CXX code/SpuriousSeedAnnihilator/AnnotationFetcher.o"
echo " CXX code/SpuriousSeedAnnihilator/NanoMerger.o"
CXX code/SpuriousSeedAnnihilator/AnnotationFetcher.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/AnnotationFetcher.cpp -o code/SpuriousSeedAnnihilator/AnnotationFetcher.o
CXX code/SpuriousSeedAnnihilator/NanoMerger.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/NanoMerger.cpp -o code/SpuriousSeedAnnihilator/NanoMerger.o
echo " CXX code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o"
CXX code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/SeedMergingWorkflow.cpp -o code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o
echo " CXX code/SpuriousSeedAnnihilator/GraphExplorer.o"
CXX code/SpuriousSeedAnnihilator/GraphExplorer.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/GraphExplorer.cpp -o code/SpuriousSeedAnnihilator/GraphExplorer.o
echo " CXX code/SpuriousSeedAnnihilator/GraphSearchResult.o"
CXX code/SpuriousSeedAnnihilator/GraphSearchResult.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/GraphSearchResult.cpp -o code/SpuriousSeedAnnihilator/GraphSearchResult.o
echo " CXX code/SpuriousSeedAnnihilator/SeedGossipSolver.o"
CXX code/SpuriousSeedAnnihilator/SeedGossipSolver.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/SeedGossipSolver.cpp -o code/SpuriousSeedAnnihilator/SeedGossipSolver.o
echo " CXX code/SpuriousSeedAnnihilator/GossipAssetManager.o"
CXX code/SpuriousSeedAnnihilator/GossipAssetManager.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/GossipAssetManager.cpp -o code/SpuriousSeedAnnihilator/GossipAssetManager.o
echo " CXX code/Surveyor/Mother.o"
CXX code/Surveyor/Mother.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/Mother.cpp -o code/Surveyor/Mother.o
echo " CXX code/Surveyor/StoreKeeper.o"
CXX code/Surveyor/StoreKeeper.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/StoreKeeper.cpp -o code/Surveyor/StoreKeeper.o
echo " CXX code/Surveyor/GenomeGraphReader.o"
CXX code/Surveyor/GenomeGraphReader.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/GenomeGraphReader.cpp -o code/Surveyor/GenomeGraphReader.o
echo " CXX code/Surveyor/CoalescenceManager.o"
CXX code/Surveyor/CoalescenceManager.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/CoalescenceManager.cpp -o code/Surveyor/CoalescenceManager.o
echo " CXX code/Surveyor/ExperimentVertex.o"
CXX code/Surveyor/ExperimentVertex.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/ExperimentVertex.cpp -o code/Surveyor/ExperimentVertex.o
echo " CXX code/Surveyor/MatrixOwner.o"
CXX code/Surveyor/MatrixOwner.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/MatrixOwner.cpp -o code/Surveyor/MatrixOwner.o
echo " CXX code/TaxonomyViewer/TaxonomyViewer.o"
CXX code/TaxonomyViewer/TaxonomyViewer.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/TaxonomyViewer/TaxonomyViewer.cpp -o code/TaxonomyViewer/TaxonomyViewer.o
echo " CXX code/TaxonomyViewer/GenomeToTaxonLoader.o"
CXX code/TaxonomyViewer/GenomeToTaxonLoader.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/TaxonomyViewer/GenomeToTaxonLoader.cpp -o code/TaxonomyViewer/GenomeToTaxonLoader.o
echo " CXX code/TaxonomyViewer/TaxonomicTreeLoader.o"
CXX code/TaxonomyViewer/TaxonomicTreeLoader.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/TaxonomyViewer/TaxonomicTreeLoader.cpp -o code/TaxonomyViewer/TaxonomicTreeLoader.o
echo " CXX code/TaxonomyViewer/TaxonNameLoader.o"
CXX code/TaxonomyViewer/TaxonNameLoader.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/TaxonomyViewer/TaxonNameLoader.cpp -o code/TaxonomyViewer/TaxonNameLoader.o
echo " CXX code/VerticesExtractor/VerticesExtractor.o"
CXX code/VerticesExtractor/VerticesExtractor.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/VerticesExtractor.cpp -o code/VerticesExtractor/VerticesExtractor.o
echo " CXX code/VerticesExtractor/GridTable.o"
CXX code/VerticesExtractor/GridTable.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/GridTable.cpp -o code/VerticesExtractor/GridTable.o
echo " CXX code/VerticesExtractor/GridTableIterator.o"
CXX code/VerticesExtractor/GridTableIterator.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/GridTableIterator.cpp -o code/VerticesExtractor/GridTableIterator.o
echo " CXX code/VerticesExtractor/Vertex.o"
CXX code/VerticesExtractor/Vertex.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/Vertex.cpp -o code/VerticesExtractor/Vertex.o
echo " CXX code/application_core/Machine.o"
CXX code/application_core/Machine.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/application_core/Machine.cpp -o code/application_core/Machine.o
make -j21 --jobserver-auth=fifo:/tmp/GMfifo120559 -C RayPlatform
make[3]: Entering directory '/build/reproducible-path/ray-2.3.1/RayPlatform'
make[3]: warning: -j21 forced in submake: resetting jobserver mode.
echo " CXX RayPlatform/memory/ReusableMemoryStore.o"
echo " CXX RayPlatform/memory/MyAllocator.o"
echo " CXX RayPlatform/memory/RingAllocator.o"
CXX RayPlatform/memory/ReusableMemoryStore.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/ReusableMemoryStore.o RayPlatform/memory/ReusableMemoryStore.cpp
CXX RayPlatform/memory/MyAllocator.o
echo " CXX RayPlatform/memory/allocator.o"
CXX RayPlatform/memory/RingAllocator.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/MyAllocator.o RayPlatform/memory/MyAllocator.cpp
CXX RayPlatform/memory/allocator.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/RingAllocator.o RayPlatform/memory/RingAllocator.cpp
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/allocator.o RayPlatform/memory/allocator.cpp
echo " CXX RayPlatform/memory/DefragmentationGroup.o"
CXX RayPlatform/memory/DefragmentationGroup.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/DefragmentationGroup.o RayPlatform/memory/DefragmentationGroup.cpp
echo " CXX RayPlatform/memory/ChunkAllocatorWithDefragmentation.o"
CXX RayPlatform/memory/ChunkAllocatorWithDefragmentation.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/ChunkAllocatorWithDefragmentation.o RayPlatform/memory/ChunkAllocatorWithDefragmentation.cpp
echo " CXX RayPlatform/memory/DefragmentationLane.o"
CXX RayPlatform/memory/DefragmentationLane.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/DefragmentationLane.o RayPlatform/memory/DefragmentationLane.cpp
echo " CXX RayPlatform/memory/DirtyBuffer.o"
CXX RayPlatform/memory/DirtyBuffer.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/DirtyBuffer.o RayPlatform/memory/DirtyBuffer.cpp
echo " CXX RayPlatform/routing/ConnectionGraph.o"
CXX RayPlatform/routing/ConnectionGraph.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/ConnectionGraph.o RayPlatform/routing/ConnectionGraph.cpp
echo " CXX RayPlatform/routing/GraphImplementation.o"
CXX RayPlatform/routing/GraphImplementation.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementation.o RayPlatform/routing/GraphImplementation.cpp
echo " CXX RayPlatform/routing/GraphImplementationRandom.o"
CXX RayPlatform/routing/GraphImplementationRandom.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationRandom.o RayPlatform/routing/GraphImplementationRandom.cpp
echo " CXX RayPlatform/routing/GraphImplementationComplete.o"
CXX RayPlatform/routing/GraphImplementationComplete.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationComplete.o RayPlatform/routing/GraphImplementationComplete.cpp
echo " CXX RayPlatform/routing/GraphImplementationDeBruijn.o"
CXX RayPlatform/routing/GraphImplementationDeBruijn.o
echo " CXX RayPlatform/routing/GraphImplementationKautz.o"
CXX RayPlatform/routing/GraphImplementationKautz.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationKautz.o RayPlatform/routing/GraphImplementationKautz.cpp
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationDeBruijn.o RayPlatform/routing/GraphImplementationDeBruijn.cpp
echo " CXX RayPlatform/routing/GraphImplementationExperimental.o"
CXX RayPlatform/routing/GraphImplementationExperimental.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationExperimental.o RayPlatform/routing/GraphImplementationExperimental.cpp
echo " CXX RayPlatform/routing/GraphImplementationGroup.o"
CXX RayPlatform/routing/GraphImplementationGroup.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationGroup.o RayPlatform/routing/GraphImplementationGroup.cpp
echo " CXX RayPlatform/routing/Polytope.o"
CXX RayPlatform/routing/Polytope.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/Polytope.o RayPlatform/routing/Polytope.cpp
echo " CXX RayPlatform/routing/Torus.o"
CXX RayPlatform/routing/Torus.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/Torus.o RayPlatform/routing/Torus.cpp
echo " CXX RayPlatform/communication/mpi_tags.o"
CXX RayPlatform/communication/mpi_tags.o
echo " CXX RayPlatform/communication/VirtualCommunicator.o"
CXX RayPlatform/communication/VirtualCommunicator.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/mpi_tags.o RayPlatform/communication/mpi_tags.cpp
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/VirtualCommunicator.o RayPlatform/communication/VirtualCommunicator.cpp
echo " CXX RayPlatform/communication/BufferedData.o"
CXX RayPlatform/communication/BufferedData.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/BufferedData.o RayPlatform/communication/BufferedData.cpp
echo " CXX RayPlatform/communication/Message.o"
CXX RayPlatform/communication/Message.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/Message.o RayPlatform/communication/Message.cpp
echo " CXX RayPlatform/communication/MessagesHandler.o"
CXX RayPlatform/communication/MessagesHandler.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/MessagesHandler.o RayPlatform/communication/MessagesHandler.cpp
echo " CXX RayPlatform/communication/MessageQueue.o"
CXX RayPlatform/communication/MessageQueue.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/MessageQueue.o RayPlatform/communication/MessageQueue.cpp
echo " CXX RayPlatform/communication/MessageRouter.o"
CXX RayPlatform/communication/MessageRouter.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/MessageRouter.o RayPlatform/communication/MessageRouter.cpp
RayPlatform/routing/GraphImplementationRandom.cpp: In member function 'virtual void GraphImplementationRandom::makeConnections(int)':
RayPlatform/routing/GraphImplementationRandom.cpp:67:36: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<int*, vector<int> >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations]
67 | std::random_shuffle(identifiers.begin(),identifiers.end());
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
from RayPlatform/routing/GraphImplementationRandom.cpp:25:
/usr/include/c++/14/bits/stl_algo.h:4492:5: note: declared here
4492 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last)
| ^~~~~~~~~~~~~~
echo " CXX RayPlatform/scheduling/VirtualProcessor.o"
CXX RayPlatform/scheduling/VirtualProcessor.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/scheduling/VirtualProcessor.o RayPlatform/scheduling/VirtualProcessor.cpp
echo " CXX RayPlatform/scheduling/TaskCreator.o"
CXX RayPlatform/scheduling/TaskCreator.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/scheduling/TaskCreator.o RayPlatform/scheduling/TaskCreator.cpp
RayPlatform/routing/GraphImplementation.cpp: In member function 'void GraphImplementation::computeRoutes()':
RayPlatform/routing/GraphImplementation.cpp:252:36: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<vector<int>*, vector<vector<int> > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations]
252 | std::random_shuffle(pairs.begin(),pairs.end());
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
from RayPlatform/routing/GraphImplementation.cpp:26:
/usr/include/c++/14/bits/stl_algo.h:4492:5: note: declared here
4492 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last)
| ^~~~~~~~~~~~~~
echo " CXX RayPlatform/scheduling/SwitchMan.o"
CXX RayPlatform/scheduling/SwitchMan.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/scheduling/SwitchMan.o RayPlatform/scheduling/SwitchMan.cpp
echo " CXX RayPlatform/core/ComputeCore.o"
CXX RayPlatform/core/ComputeCore.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/ComputeCore.o RayPlatform/core/ComputeCore.cpp
echo " CXX RayPlatform/core/MiniRank.o"
CXX RayPlatform/core/MiniRank.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/MiniRank.o RayPlatform/core/MiniRank.cpp
echo " CXX RayPlatform/core/slave_modes.o"
CXX RayPlatform/core/slave_modes.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/slave_modes.o RayPlatform/core/slave_modes.cpp
echo " CXX RayPlatform/core/OperatingSystem.o"
CXX RayPlatform/core/OperatingSystem.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/OperatingSystem.o RayPlatform/core/OperatingSystem.cpp
echo " CXX RayPlatform/core/master_modes.o"
CXX RayPlatform/core/master_modes.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/master_modes.o RayPlatform/core/master_modes.cpp
echo " CXX RayPlatform/core/statistics.o"
CXX RayPlatform/core/statistics.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/statistics.o RayPlatform/core/statistics.cpp
echo " CXX RayPlatform/plugins/CorePlugin.o"
CXX RayPlatform/plugins/CorePlugin.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/plugins/CorePlugin.o RayPlatform/plugins/CorePlugin.cpp
echo " CXX RayPlatform/plugins/RegisteredPlugin.o"
CXX RayPlatform/plugins/RegisteredPlugin.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/plugins/RegisteredPlugin.o RayPlatform/plugins/RegisteredPlugin.cpp
echo " CXX RayPlatform/structures/StaticVector.o"
CXX RayPlatform/structures/StaticVector.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/structures/StaticVector.o RayPlatform/structures/StaticVector.cpp
echo " CXX RayPlatform/profiling/Profiler.o"
CXX RayPlatform/profiling/Profiler.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/Profiler.o RayPlatform/profiling/Profiler.cpp
echo " CXX RayPlatform/profiling/Derivative.o"
CXX RayPlatform/profiling/Derivative.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/Derivative.o RayPlatform/profiling/Derivative.cpp
echo " CXX RayPlatform/profiling/TickLogger.o"
CXX RayPlatform/profiling/TickLogger.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/TickLogger.o RayPlatform/profiling/TickLogger.cpp
echo " CXX RayPlatform/profiling/TimePrinter.o"
CXX RayPlatform/profiling/TimePrinter.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/TimePrinter.o RayPlatform/profiling/TimePrinter.cpp
echo " CXX RayPlatform/profiling/ProcessStatus.o"
CXX RayPlatform/profiling/ProcessStatus.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/ProcessStatus.o RayPlatform/profiling/ProcessStatus.cpp
echo " CXX RayPlatform/handlers/MasterModeExecutor.o"
CXX RayPlatform/handlers/MasterModeExecutor.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/handlers/MasterModeExecutor.o RayPlatform/handlers/MasterModeExecutor.cpp
echo " CXX RayPlatform/handlers/SlaveModeExecutor.o"
CXX RayPlatform/handlers/SlaveModeExecutor.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/handlers/SlaveModeExecutor.o RayPlatform/handlers/SlaveModeExecutor.cpp
echo " CXX RayPlatform/handlers/MessageTagExecutor.o"
CXX RayPlatform/handlers/MessageTagExecutor.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/handlers/MessageTagExecutor.o RayPlatform/handlers/MessageTagExecutor.cpp
echo " CXX RayPlatform/cryptography/crypto.o"
CXX RayPlatform/cryptography/crypto.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/cryptography/crypto.o RayPlatform/cryptography/crypto.cpp
echo " CXX RayPlatform/store/KeyValueStore.o"
CXX RayPlatform/store/KeyValueStore.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/store/KeyValueStore.o RayPlatform/store/KeyValueStore.cpp
echo " CXX RayPlatform/store/KeyValueStoreItem.o"
CXX RayPlatform/store/KeyValueStoreItem.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/store/KeyValueStoreItem.o RayPlatform/store/KeyValueStoreItem.cpp
echo " CXX RayPlatform/store/KeyValueStoreRequest.o"
CXX RayPlatform/store/KeyValueStoreRequest.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/store/KeyValueStoreRequest.o RayPlatform/store/KeyValueStoreRequest.cpp
echo " CXX RayPlatform/actors/Actor.o"
CXX RayPlatform/actors/Actor.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/actors/Actor.o RayPlatform/actors/Actor.cpp
echo " CXX RayPlatform/actors/Playground.o"
CXX RayPlatform/actors/Playground.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/actors/Playground.o RayPlatform/actors/Playground.cpp
echo " CXX RayPlatform/files/FileReader.o"
CXX RayPlatform/files/FileReader.o
i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/i386-linux-gnu/mpich/include -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/files/FileReader.o RayPlatform/files/FileReader.cpp
echo " AR libRayPlatform.a"
AR libRayPlatform.a
ar rcs libRayPlatform.a RayPlatform/memory/ReusableMemoryStore.o RayPlatform/memory/MyAllocator.o RayPlatform/memory/RingAllocator.o RayPlatform/memory/allocator.o RayPlatform/memory/DefragmentationGroup.o RayPlatform/memory/ChunkAllocatorWithDefragmentation.o RayPlatform/memory/DefragmentationLane.o RayPlatform/memory/DirtyBuffer.o RayPlatform/routing/ConnectionGraph.o RayPlatform/routing/GraphImplementation.o RayPlatform/routing/GraphImplementationRandom.o RayPlatform/routing/GraphImplementationComplete.o RayPlatform/routing/GraphImplementationDeBruijn.o RayPlatform/routing/GraphImplementationKautz.o RayPlatform/routing/GraphImplementationExperimental.o RayPlatform/routing/GraphImplementationGroup.o RayPlatform/routing/Polytope.o RayPlatform/routing/Torus.o RayPlatform/communication/mpi_tags.o RayPlatform/communication/VirtualCommunicator.o RayPlatform/communication/BufferedData.o RayPlatform/communication/Message.o RayPlatform/communication/MessagesHandler.o RayPlatform/communication/MessageQueue.o RayPlatform/communication/MessageRouter.o RayPlatform/scheduling/VirtualProcessor.o RayPlatform/scheduling/TaskCreator.o RayPlatform/scheduling/SwitchMan.o RayPlatform/core/ComputeCore.o RayPlatform/core/MiniRank.o RayPlatform/core/slave_modes.o RayPlatform/core/OperatingSystem.o RayPlatform/core/master_modes.o RayPlatform/core/statistics.o RayPlatform/plugins/CorePlugin.o RayPlatform/plugins/RegisteredPlugin.o RayPlatform/structures/StaticVector.o RayPlatform/profiling/Profiler.o RayPlatform/profiling/Derivative.o RayPlatform/profiling/TickLogger.o RayPlatform/profiling/TimePrinter.o RayPlatform/profiling/ProcessStatus.o RayPlatform/handlers/MasterModeExecutor.o RayPlatform/handlers/SlaveModeExecutor.o RayPlatform/handlers/MessageTagExecutor.o RayPlatform/cryptography/crypto.o RayPlatform/store/KeyValueStore.o RayPlatform/store/KeyValueStoreItem.o RayPlatform/store/KeyValueStoreRequest.o RayPlatform/actors/Actor.o RayPlatform/actors/Playground.o RayPlatform/files/FileReader.o
make[3]: Leaving directory '/build/reproducible-path/ray-2.3.1/RayPlatform'
cp RayPlatform/libRayPlatform.a libRayPlatform.a
echo " AR libRay.a"
AR libRay.a
ar rcs libRay.a code/Amos/Amos.o code/CoverageGatherer/CoverageGatherer.o code/CoverageGatherer/CoverageDistribution.o code/EdgePurger/EdgePurger.o code/EdgePurger/EdgePurgerWorker.o code/Example/Example.o code/FusionData/FusionData.o code/FusionTaskCreator/FusionWorker.o code/FusionTaskCreator/FusionTaskCreator.o code/GeneOntology/KeyEncoder.o code/GeneOntology/GeneOntology.o code/GenomeNeighbourhood/GenomeNeighbourhood.o code/GenomeNeighbourhood/Neighbour.o code/GenomeNeighbourhood/NeighbourPair.o code/JoinerTaskCreator/JoinerWorker.o code/JoinerTaskCreator/JoinerTaskCreator.o code/KmerAcademyBuilder/KmerAcademyBuilder.o code/KmerAcademyBuilder/BloomFilter.o code/KmerAcademyBuilder/Kmer.o code/Library/LibraryPeakFinder.o code/Library/LibraryWorker.o code/Library/Library.o code/MachineHelper/MachineHelper.o code/MessageProcessor/MessageProcessor.o code/Mock/Parameters.o code/Mock/common_functions.o code/Mock/Mock.o code/NetworkTest/NetworkTest.o code/Partitioner/Partitioner.o code/PathEvaluator/PathEvaluator.o code/Scaffolder/Scaffolder.o code/Scaffolder/ScaffoldingLink.o code/Scaffolder/SummarizedLink.o code/Scaffolder/ScaffoldingAlgorithm.o code/Scaffolder/ScaffoldingVertex.o code/Scaffolder/ScaffoldingEdge.o code/Searcher/Searcher.o code/Searcher/SearchDirectory.o code/Searcher/ContigSearchEntry.o code/Searcher/ContigHit.o code/Searcher/ColorSet.o code/Searcher/VirtualKmerColor.o code/Searcher/QualityCaller.o code/Searcher/DistributionWriter.o code/Searcher/ColoredPeakFinder.o code/SeedExtender/SeedExtender.o code/SeedExtender/Direction.o code/SeedExtender/VertexMessenger.o code/SeedExtender/ReadFetcher.o code/SeedExtender/BubbleTool.o code/SeedExtender/Chooser.o code/SeedExtender/OpenAssemblerChooser.o code/SeedExtender/TipWatchdog.o code/SeedExtender/NovaEngine.o code/SeedExtender/ExtensionElement.o code/SeedExtender/DepthFirstSearchData.o code/SeedExtender/ExtensionData.o code/SeedingData/GraphPath.o code/SeedingData/SeedWorker.o code/SeedingData/SeedingData.o code/SeedingData/PathHandle.o code/SequencesIndexer/SequencesIndexer.o code/SequencesIndexer/IndexerWorker.o code/SequencesIndexer/PairedRead.o code/SequencesIndexer/ReadAnnotation.o code/SequencesLoader/SequencesLoader.o code/SequencesLoader/Read.o code/SequencesLoader/ArrayOfReads.o code/SequencesLoader/ColorSpaceDecoder.o code/SequencesLoader/ColorSpaceLoader.o code/SequencesLoader/FastaLoader.o code/SequencesLoader/FastaLoaderForReads.o code/SequencesLoader/FastqLoader.o code/SequencesLoader/ExportLoader.o code/SequencesLoader/LoaderInterface.o code/SequencesLoader/LoaderFactory.o code/SequencesLoader/SffLoader.o code/SequencesLoader/Loader.o code/SequencesLoader/BufferedReader.o code/SequencesLoader/ReadHandle.o code/SequencesLoader/BzReader.o code/SequencesLoader/FastqBz2Loader.o code/SequencesLoader/FastaBz2Loader.o code/SequencesLoader/FastqGzLoader.o code/SequencesLoader/FastaGzLoader.o code/SequencesLoader/SequenceFileDetector.o code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o code/SpuriousSeedAnnihilator/AnnihilationWorker.o code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o code/SpuriousSeedAnnihilator/AttributeFetcher.o code/SpuriousSeedAnnihilator/AnnotationFetcher.o code/SpuriousSeedAnnihilator/NanoMerger.o code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o code/SpuriousSeedAnnihilator/GraphExplorer.o code/SpuriousSeedAnnihilator/GraphSearchResult.o code/SpuriousSeedAnnihilator/SeedGossipSolver.o code/SpuriousSeedAnnihilator/GossipAssetManager.o code/Surveyor/Mother.o code/Surveyor/StoreKeeper.o code/Surveyor/GenomeGraphReader.o code/Surveyor/CoalescenceManager.o code/Surveyor/ExperimentVertex.o code/Surveyor/MatrixOwner.o code/TaxonomyViewer/TaxonomyViewer.o code/TaxonomyViewer/GenomeToTaxonLoader.o code/TaxonomyViewer/TaxonomicTreeLoader.o code/TaxonomyViewer/TaxonNameLoader.o code/VerticesExtractor/VerticesExtractor.o code/VerticesExtractor/GridTable.o code/VerticesExtractor/GridTableIterator.o code/VerticesExtractor/Vertex.o code/application_core/Machine.o
echo " LD Ray"
LD Ray
i686-linux-gnu-g++ code/application_core/ray_main.o libRay.a libRayPlatform.a -oRay -lz -lbz2 -Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -L/usr/lib/i386-linux-gnu/mpich/lib -lmpichfort -lmpich -lpthread -lhwloc -lpthread
echo install-prefix > PREFIX
make[2]: Leaving directory '/build/reproducible-path/ray-2.3.1'
#Rename 2 docs to make more sence in package context
cp README.md README.Ray
cp RayPlatform/README.md README.RayPlatform
cp RayPlatform/README.md RayPlatform/README
make[1]: Leaving directory '/build/reproducible-path/ray-2.3.1'
dh_auto_test
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install
make -j21 install DESTDIR=/build/reproducible-path/ray-2.3.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/reproducible-path/ray-2.3.1'
mkdir -p install-prefix
echo ""
echo "Installing Ray to install-prefix"
Installing Ray to install-prefix
echo ""
cp LICENSE.txt install-prefix
cp gpl-3.0.txt install-prefix
cp RayPlatform/lgpl-3.0.txt install-prefix
cp Ray install-prefix
cp -r Documentation install-prefix
cp README.md install-prefix
cp MANUAL_PAGE.txt install-prefix
cp AUTHORS install-prefix
cp -r scripts REFIX
mkdir install-prefix/RayPlatform
cp RayPlatform/AUTHORS install-prefix/RayPlatform
cp RayPlatform/README.md install-prefix/RayPlatform
cp -r RayPlatform/Documentation install-prefix/RayPlatform
make[1]: Leaving directory '/build/reproducible-path/ray-2.3.1'
dh_install
dh_installdocs
dh_installchangelogs
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'ray' in '../ray_2.3.1-9_i386.deb'.
dpkg-deb: building package 'ray-dbgsym' in '../ray-dbgsym_2.3.1-9_i386.deb'.
dpkg-deb: building package 'ray-doc' in '../ray-doc_2.3.1-9_all.deb'.
dpkg-deb: building package 'ray-extra' in '../ray-extra_2.3.1-9_all.deb'.
dpkg-genbuildinfo --build=binary -O../ray_2.3.1-9_i386.buildinfo
dpkg-genchanges --build=binary -O../ray_2.3.1-9_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/115266/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/115266/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/115266 and its subdirectories
I: Current time: Tue Mar 31 20:21:18 +14 2026
I: pbuilder-time-stamp: 1774938078