I: pbuilder: network access will be disabled during build I: Current time: Thu Aug 29 17:04:32 -12 2024 I: pbuilder-time-stamp: 1724994272 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [racon_1.5.0-3.dsc] I: copying [./racon_1.5.0.orig.tar.gz] I: copying [./racon_1.5.0-3.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Sep 29 12:45:21 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./racon_1.5.0-3.dsc: no acceptable signature found dpkg-source: info: extracting racon in racon-1.5.0 dpkg-source: info: unpacking racon_1.5.0.orig.tar.gz dpkg-source: info: unpacking racon_1.5.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/35202/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='0f3d10f6d8134ec69d17aab747fe82e1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='35202' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.MgZh5f4O/pbuilderrc_JSGu --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.MgZh5f4O/b1 --logfile b1/build.log racon_1.5.0-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-23-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.99-1 (2024-07-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/35202/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19757 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev (>= 1.2.7-3~); however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1t64{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 66 newly installed, 0 to remove and 0 not upgraded. Need to get 40.9 MB of archives. After unpacking 149 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 libproc2-0 i386 2:4.0.4-5 [65.6 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 procps i386 2:4.0.4-5 [875 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3 [42.9 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.2-7 [101 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 autopoint all 0.22.5-2 [723 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-5 [9550 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg-3+b1 [704 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 libarchive13t64 i386 3.7.4-1 [390 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b4 [309 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.1-1 [23.1 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-3 [9432 B] Get: 26 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-7 [20.5 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-7 [61.0 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3 [200 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 libnghttp2-14 i386 1.62.1-2 [83.1 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 libssh2-1t64 i386 1.11.0-7 [226 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 libcurl4t64 i386 8.9.1-2 [502 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.2-1 [107 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 libjsoncpp25 i386 1.9.5-6+b2 [89.2 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 librhash0 i386 1.4.3-3+b1 [143 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 libuv1t64 i386 1.48.0-5 [156 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 cmake-data all 3.30.2-2 [2221 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 cmake i386 3.30.2-2 [12.5 MB] Get: 42 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-7 [517 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.191-2 [194 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 debhelper all 13.20 [915 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 googletest all 1.15.2-1 [514 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 libbiosoup-dev all 0.11.0-2 [8000 B] Get: 56 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1 [915 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 libbioparser-dev all 3.1.0-1 [9108 B] Get: 58 http://deb.debian.org/debian unstable/main i386 rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get: 59 http://deb.debian.org/debian unstable/main i386 libcereal-dev i386 1.3.2+dfsg-5 [221 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 libedlib1 i386 1.2.7-6 [17.0 kB] Get: 61 http://deb.debian.org/debian unstable/main i386 libedlib-dev i386 1.2.7-6 [22.0 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 libgtest-dev i386 1.15.2-1 [272 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 libspoa7.0.0 i386 4.1.4-2 [89.8 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 libspoa-dev i386 4.1.4-2 [9524 B] Get: 65 http://deb.debian.org/debian unstable/main i386 libthread-pool-dev i386 4.0.0-2 [7296 B] Get: 66 http://deb.debian.org/debian unstable/main i386 rampler i386 2.1.1-1 [22.5 kB] Fetched 40.9 MB in 2s (26.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19757 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-5_i386.deb ... Unpacking libproc2-0:i386 (2:4.0.4-5) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-5_i386.deb ... Unpacking procps (2:4.0.4-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-2_i386.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-5_i386.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.2-7_i386.deb ... Unpacking bsdextrautils (2.40.2-7) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../10-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../17-libicu72_72.1-5_i386.deb ... Unpacking libicu72:i386 (72.1-5) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../18-libxml2_2.12.7+dfsg-3+b1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg-3+b1) ... Selecting previously unselected package libarchive13t64:i386. Preparing to unpack .../19-libarchive13t64_3.7.4-1_i386.deb ... Unpacking libarchive13t64:i386 (3.7.4-1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../20-libbrotli1_1.1.0-2+b4_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b4) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../21-libkrb5support0_1.21.3-3_i386.deb ... Unpacking libkrb5support0:i386 (1.21.3-3) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../22-libcom-err2_1.47.1-1_i386.deb ... Unpacking libcom-err2:i386 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../23-libk5crypto3_1.21.3-3_i386.deb ... Unpacking libk5crypto3:i386 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../24-libkeyutils1_1.6.3-3_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../25-libkrb5-3_1.21.3-3_i386.deb ... Unpacking libkrb5-3:i386 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../26-libgssapi-krb5-2_1.21.3-3_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.21.3-3) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../27-libsasl2-modules-db_2.1.28+dfsg1-7_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg1-7) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../28-libsasl2-2_2.1.28+dfsg1-7_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg1-7) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../29-libldap-2.5-0_2.5.18+dfsg-3_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.18+dfsg-3) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../30-libnghttp2-14_1.62.1-2_i386.deb ... Unpacking libnghttp2-14:i386 (1.62.1-2) ... Selecting previously unselected package libpsl5t64:i386. Preparing to unpack .../31-libpsl5t64_0.21.2-1.1_i386.deb ... Unpacking libpsl5t64:i386 (0.21.2-1.1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../32-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:i386. Preparing to unpack .../33-libssh2-1t64_1.11.0-7_i386.deb ... Unpacking libssh2-1t64:i386 (1.11.0-7) ... Selecting previously unselected package libcurl4t64:i386. Preparing to unpack .../34-libcurl4t64_8.9.1-2_i386.deb ... Unpacking libcurl4t64:i386 (8.9.1-2) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../35-libexpat1_2.6.2-1_i386.deb ... Unpacking libexpat1:i386 (2.6.2-1) ... Selecting previously unselected package libjsoncpp25:i386. Preparing to unpack .../36-libjsoncpp25_1.9.5-6+b2_i386.deb ... Unpacking libjsoncpp25:i386 (1.9.5-6+b2) ... Selecting previously unselected package librhash0:i386. Preparing to unpack .../37-librhash0_1.4.3-3+b1_i386.deb ... Unpacking librhash0:i386 (1.4.3-3+b1) ... Selecting previously unselected package libuv1t64:i386. Preparing to unpack .../38-libuv1t64_1.48.0-5_i386.deb ... Unpacking libuv1t64:i386 (1.48.0-5) ... Selecting previously unselected package cmake-data. Preparing to unpack .../39-cmake-data_3.30.2-2_all.deb ... Unpacking cmake-data (3.30.2-2) ... Selecting previously unselected package cmake. Preparing to unpack .../40-cmake_3.30.2-2_i386.deb ... Unpacking cmake (3.30.2-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../41-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../42-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../43-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../44-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../45-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../46-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../47-libelf1t64_0.191-2_i386.deb ... Unpacking libelf1t64:i386 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../48-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../49-gettext_0.22.5-2_i386.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../50-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../51-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../52-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package googletest. Preparing to unpack .../53-googletest_1.15.2-1_all.deb ... Unpacking googletest (1.15.2-1) ... Selecting previously unselected package libbiosoup-dev. Preparing to unpack .../54-libbiosoup-dev_0.11.0-2_all.deb ... Unpacking libbiosoup-dev (0.11.0-2) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../55-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1) ... Selecting previously unselected package libbioparser-dev. Preparing to unpack .../56-libbioparser-dev_3.1.0-1_all.deb ... Unpacking libbioparser-dev (3.1.0-1) ... Selecting previously unselected package rapidjson-dev. Preparing to unpack .../57-rapidjson-dev_1.1.0+dfsg2-7.3_all.deb ... Unpacking rapidjson-dev (1.1.0+dfsg2-7.3) ... Selecting previously unselected package libcereal-dev. Preparing to unpack .../58-libcereal-dev_1.3.2+dfsg-5_i386.deb ... Unpacking libcereal-dev (1.3.2+dfsg-5) ... Selecting previously unselected package libedlib1:i386. Preparing to unpack .../59-libedlib1_1.2.7-6_i386.deb ... Unpacking libedlib1:i386 (1.2.7-6) ... Selecting previously unselected package libedlib-dev:i386. Preparing to unpack .../60-libedlib-dev_1.2.7-6_i386.deb ... Unpacking libedlib-dev:i386 (1.2.7-6) ... Selecting previously unselected package libgtest-dev:i386. Preparing to unpack .../61-libgtest-dev_1.15.2-1_i386.deb ... Unpacking libgtest-dev:i386 (1.15.2-1) ... Selecting previously unselected package libspoa7.0.0:i386. Preparing to unpack .../62-libspoa7.0.0_4.1.4-2_i386.deb ... Unpacking libspoa7.0.0:i386 (4.1.4-2) ... Selecting previously unselected package libspoa-dev:i386. Preparing to unpack .../63-libspoa-dev_4.1.4-2_i386.deb ... Unpacking libspoa-dev:i386 (4.1.4-2) ... Selecting previously unselected package libthread-pool-dev. Preparing to unpack .../64-libthread-pool-dev_4.0.0-2_i386.deb ... Unpacking libthread-pool-dev (4.0.0-2) ... Selecting previously unselected package rampler. Preparing to unpack .../65-rampler_2.1.1-1_i386.deb ... Unpacking rampler (2.1.1-1) ... Setting up libexpat1:i386 (2.6.2-1) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libkeyutils1:i386 (1.6.3-3) ... Setting up libicu72:i386 (72.1-5) ... Setting up bsdextrautils (2.40.2-7) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:i386 (1.1.0-2+b4) ... Setting up libuv1t64:i386 (1.48.0-5) ... Setting up libmagic1t64:i386 (1:5.45-3) ... Setting up libpsl5t64:i386 (0.21.2-1.1) ... Setting up libnghttp2-14:i386 (1.62.1-2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:i386 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up googletest (1.15.2-1) ... Setting up libelf1t64:i386 (0.191-2) ... Setting up rapidjson-dev (1.1.0+dfsg2-7.3) ... Setting up libkrb5support0:i386 (1.21.3-3) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-7) ... Setting up libbiosoup-dev (0.11.0-2) ... Setting up autotools-dev (20220109.1) ... Setting up rampler (2.1.1-1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libproc2-0:i386 (2:4.0.4-5) ... Setting up libthread-pool-dev (4.0.0-2) ... Setting up libspoa7.0.0:i386 (4.1.4-2) ... Setting up autopoint (0.22.5-2) ... Setting up libjsoncpp25:i386 (1.9.5-6+b2) ... Setting up libk5crypto3:i386 (1.21.3-3) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-7) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1) ... Setting up libedlib1:i386 (1.2.7-6) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libbioparser-dev (3.1.0-1) ... Setting up librhash0:i386 (1.4.3-3+b1) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-5) ... Setting up cmake-data (3.30.2-2) ... Setting up libkrb5-3:i386 (1.21.3-3) ... Setting up libssh2-1t64:i386 (1.11.0-7) ... Setting up libxml2:i386 (2.12.7+dfsg-3+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libgtest-dev:i386 (1.15.2-1) ... Setting up libtool (2.4.7-7) ... Setting up libcereal-dev (1.3.2+dfsg-5) ... Setting up libldap-2.5-0:i386 (2.5.18+dfsg-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:i386 (1.21.3-3) ... Setting up libedlib-dev:i386 (1.2.7-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libarchive13t64:i386 (3.7.4-1) ... Setting up libcurl4t64:i386 (8.9.1-2) ... Setting up libspoa-dev:i386 (4.1.4-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up cmake (3.30.2-2) ... Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -Dracon_build_tests=ON -Dracon_build_wrapper=ON .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (0.7s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu # Somehow the means in the patch for CMakeLists.txt to replace -lpthread by -pthread to not work # Just hack it here sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' dh_auto_build -O--buildsystem=cmake cd obj-i686-linux-gnu && make -j11 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu/CMakeFiles/racon.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' [ 10%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o [ 20%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o [ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o [ 50%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o [ 50%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/reproducible-path/racon-1.5.0/src/logger.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp /build/reproducible-path/racon-1.5.0/src/overlap.cpp: In member function 'virtual void racon::Overlap::align_overlaps(const char*, uint32_t, const char*, uint32_t)': /build/reproducible-path/racon-1.5.0/src/overlap.cpp:219:48: warning: format '%zu' expects argument of type 'size_t', but argument 3 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 219 | "edlib unable to align pair (%zu x %zu)!\n", q_id_, t_id_); | ~~^ ~~~~~ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu /build/reproducible-path/racon-1.5.0/src/overlap.cpp:219:54: warning: format '%zu' expects argument of type 'size_t', but argument 4 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 219 | "edlib unable to align pair (%zu x %zu)!\n", q_id_, t_id_); | ~~^ ~~~~~ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu /build/reproducible-path/racon-1.5.0/src/window.cpp: In member function 'bool racon::Window::generate_consensus(std::shared_ptr, bool)': /build/reproducible-path/racon-1.5.0/src/window.cpp:142:27: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 142 | "contig %lu might be chimeric in window %u!\n", id_, rank_); | ~~^ ~~~ | | | | long unsigned int uint64_t {aka long long unsigned int} | %llu [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libracon.a CMakeFiles/racon.dir/src/logger.cpp.o CMakeFiles/racon.dir/src/polisher.cpp.o CMakeFiles/racon.dir/src/overlap.cpp.o CMakeFiles/racon.dir/src/sequence.cpp.o CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/ranlib lib/libracon.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' [ 60%] Built target racon make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/depend make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu/CMakeFiles/racon_exe.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu/CMakeFiles/racon_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' [ 70%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o /usr/bin/c++ -DTEST_DATA=\"/build/reproducible-path/racon-1.5.0/test/data/\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp [ 80%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o /usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' [ 90%] Built target racon_exe [100%] Linking CXX executable bin/racon_test /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/racon_test.dir/test/racon_test.cpp.o -o bin/racon_test lib/libracon.a -ledlib -lspoa -pthread -lz /usr/lib/i386-linux-gnu/libgtest_main.a /usr/lib/i386-linux-gnu/libgtest.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' [100%] Built target racon_test make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' cd test && ../obj-*/bin/racon_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (13 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (3 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (9 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (13 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (9 ms) [----------] 5 tests from RaconInitializeTest (49 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.001457 s [racon::Polisher::initialize] loaded sequences 0.058770 s [racon::Polisher::initialize] loaded overlaps 0.000855 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.103205 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.155184 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.220258 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.283283 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.343324 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.382590 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.491132 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.679166 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.719221 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.798064 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.839210 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.927201 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.951205 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.011212 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.079208 s [racon::Polisher::initialize] aligning overlaps [================> ] 1.171216 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.195206 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.215235 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.259217 s [racon::Polisher::initialize] aligning overlaps [====================] 1.308108 s [racon::Polisher::initialize] transformed data into windows 0.108000 s [racon::Polisher::polish] generating consensus [=> ] 0.663580 s [racon::Polisher::polish] generating consensus [==> ] 1.270946 s [racon::Polisher::polish] generating consensus [===> ] 1.846775 s [racon::Polisher::polish] generating consensus [====> ] 2.264458 s [racon::Polisher::polish] generating consensus [=====> ] 2.463120 s [racon::Polisher::polish] generating consensus [======> ] 2.663051 s [racon::Polisher::polish] generating consensus [=======> ] 2.879218 s [racon::Polisher::polish] generating consensus [========> ] 3.110468 s [racon::Polisher::polish] generating consensus [=========> ] 3.507048 s [racon::Polisher::polish] generating consensus [==========> ] 3.903510 s [racon::Polisher::polish] generating consensus [===========> ] 4.645151 s [racon::Polisher::polish] generating consensus [============> ] 5.557595 s [racon::Polisher::polish] generating consensus [=============> ] 6.735041 s [racon::Polisher::polish] generating consensus [==============> ] 7.937261 s [racon::Polisher::polish] generating consensus [===============> ] 8.767058 s [racon::Polisher::polish] generating consensus [================> ] 9.359143 s [racon::Polisher::polish] generating consensus [=================> ] 10.190908 s [racon::Polisher::polish] generating consensus [==================> ] 10.619333 s [racon::Polisher::polish] generating consensus [===================>] 11.183975 s [racon::Polisher::polish] generating consensus [====================] 13.357792 s [racon::Polisher::] total = 14.888280 s [ OK ] RaconPolishingTest.ConsensusWithQualities (14922 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.000869 s [racon::Polisher::initialize] loaded sequences 0.025485 s [racon::Polisher::initialize] loaded overlaps 0.000550 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.079893 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.131504 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.179419 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.213120 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.283315 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.343334 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.441807 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.495126 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.540085 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.578814 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.634492 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.683560 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.738032 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.759881 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.787094 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.810114 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.830823 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.868388 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.937181 s [racon::Polisher::initialize] aligning overlaps [====================] 0.971324 s [racon::Polisher::initialize] transformed data into windows 0.000749 s [racon::Polisher::polish] generating consensus [=> ] 0.731279 s [racon::Polisher::polish] generating consensus [==> ] 1.823404 s [racon::Polisher::polish] generating consensus [===> ] 2.580715 s [racon::Polisher::polish] generating consensus [====> ] 3.095662 s [racon::Polisher::polish] generating consensus [=====> ] 3.451351 s [racon::Polisher::polish] generating consensus [======> ] 3.803922 s [racon::Polisher::polish] generating consensus [=======> ] 4.139698 s [racon::Polisher::polish] generating consensus [========> ] 4.458715 s [racon::Polisher::polish] generating consensus [=========> ] 5.279677 s [racon::Polisher::polish] generating consensus [==========> ] 6.503197 s [racon::Polisher::polish] generating consensus [===========> ] 7.619773 s [racon::Polisher::polish] generating consensus [============> ] 8.859601 s [racon::Polisher::polish] generating consensus [=============> ] 10.819266 s [racon::Polisher::polish] generating consensus [==============> ] 12.559114 s [racon::Polisher::polish] generating consensus [===============> ] 14.383126 s [racon::Polisher::polish] generating consensus [================> ] 15.806625 s [racon::Polisher::polish] generating consensus [=================> ] 17.347074 s [racon::Polisher::polish] generating consensus [==================> ] 17.947118 s [racon::Polisher::polish] generating consensus [===================>] 18.925774 s [racon::Polisher::polish] generating consensus [====================] 22.979639 s [racon::Polisher::] total = 24.040208 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (24067 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.000951 s [racon::Polisher::initialize] loaded sequences 0.053246 s [racon::Polisher::initialize] loaded overlaps 0.035762 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.016838 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.017384 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.018043 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.018675 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.019305 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.019895 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.020508 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.021054 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.021727 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.021945 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.021959 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.021978 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.021987 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.022002 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.022014 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.022029 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.022033 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.022055 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.022069 s [racon::Polisher::initialize] aligning overlaps [====================] 0.022074 s [racon::Polisher::initialize] transformed data into windows 0.080500 s [racon::Polisher::polish] generating consensus [=> ] 0.659132 s [racon::Polisher::polish] generating consensus [==> ] 1.279262 s [racon::Polisher::polish] generating consensus [===> ] 1.790390 s [racon::Polisher::polish] generating consensus [====> ] 2.192042 s [racon::Polisher::polish] generating consensus [=====> ] 2.372462 s [racon::Polisher::polish] generating consensus [======> ] 2.575286 s [racon::Polisher::polish] generating consensus [=======> ] 2.828026 s [racon::Polisher::polish] generating consensus [========> ] 3.093067 s [racon::Polisher::polish] generating consensus [=========> ] 3.403021 s [racon::Polisher::polish] generating consensus [==========> ] 3.911064 s [racon::Polisher::polish] generating consensus [===========> ] 4.559794 s [racon::Polisher::polish] generating consensus [============> ] 5.498256 s [racon::Polisher::polish] generating consensus [=============> ] 6.612299 s [racon::Polisher::polish] generating consensus [==============> ] 7.886053 s [racon::Polisher::polish] generating consensus [===============> ] 8.906823 s [racon::Polisher::polish] generating consensus [================> ] 9.559352 s [racon::Polisher::polish] generating consensus [=================> ] 10.336491 s [racon::Polisher::polish] generating consensus [==================> ] 10.821799 s [racon::Polisher::polish] generating consensus [===================>] 11.277276 s [racon::Polisher::polish] generating consensus [====================] 13.307545 s [racon::Polisher::] total = 13.547543 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (13574 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.000952 s [racon::Polisher::initialize] loaded sequences 0.020684 s [racon::Polisher::initialize] loaded overlaps 0.028017 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.004124 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.004302 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.004494 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.004711 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.004745 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.004873 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.005034 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.005083 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.005244 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.005439 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.005566 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.005747 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.005956 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.011927 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.011943 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.011956 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.011966 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.011975 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.011984 s [racon::Polisher::initialize] aligning overlaps [====================] 0.011994 s [racon::Polisher::initialize] transformed data into windows 0.000783 s [racon::Polisher::polish] generating consensus [=> ] 0.619032 s [racon::Polisher::polish] generating consensus [==> ] 1.327113 s [racon::Polisher::polish] generating consensus [===> ] 1.946961 s [racon::Polisher::polish] generating consensus [====> ] 2.375951 s [racon::Polisher::polish] generating consensus [=====> ] 2.616840 s [racon::Polisher::polish] generating consensus [======> ] 2.844535 s [racon::Polisher::polish] generating consensus [=======> ] 3.198296 s [racon::Polisher::polish] generating consensus [========> ] 3.688697 s [racon::Polisher::polish] generating consensus [=========> ] 4.047432 s [racon::Polisher::polish] generating consensus [==========> ] 4.799475 s [racon::Polisher::polish] generating consensus [===========> ] 5.567692 s [racon::Polisher::polish] generating consensus [============> ] 6.503860 s [racon::Polisher::polish] generating consensus [=============> ] 7.959607 s [racon::Polisher::polish] generating consensus [==============> ] 9.183022 s [racon::Polisher::polish] generating consensus [===============> ] 10.433590 s [racon::Polisher::polish] generating consensus [================> ] 11.507615 s [racon::Polisher::polish] generating consensus [=================> ] 12.531505 s [racon::Polisher::polish] generating consensus [==================> ] 13.081537 s [racon::Polisher::polish] generating consensus [===================>] 13.718243 s [racon::Polisher::polish] generating consensus [====================] 16.726946 s [racon::Polisher::] total = 16.834228 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (16865 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.000931 s [racon::Polisher::initialize] loaded sequences 0.050737 s [racon::Polisher::initialize] loaded overlaps 0.000426 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.096175 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.139758 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.191594 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.256141 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.301116 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.329834 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.433670 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.486795 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.531623 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.571817 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.627351 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.669125 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.715805 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.739990 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.773594 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.845640 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.932603 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.019308 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.056272 s [racon::Polisher::initialize] aligning overlaps [====================] 1.056308 s [racon::Polisher::initialize] transformed data into windows 0.092413 s [racon::Polisher::polish] generating consensus [=> ] 2.346548 s [racon::Polisher::polish] generating consensus [==> ] 2.346616 s [racon::Polisher::polish] generating consensus [===> ] 4.421402 s [racon::Polisher::polish] generating consensus [====> ] 4.421895 s [racon::Polisher::polish] generating consensus [=====> ] 5.330068 s [racon::Polisher::polish] generating consensus [======> ] 5.330115 s [racon::Polisher::polish] generating consensus [=======> ] 6.106390 s [racon::Polisher::polish] generating consensus [========> ] 6.106445 s [racon::Polisher::polish] generating consensus [=========> ] 7.485965 s [racon::Polisher::polish] generating consensus [==========> ] 7.503496 s [racon::Polisher::polish] generating consensus [===========> ] 10.050743 s [racon::Polisher::polish] generating consensus [============> ] 10.247442 s [racon::Polisher::polish] generating consensus [=============> ] 13.953149 s [racon::Polisher::polish] generating consensus [==============> ] 14.097696 s [racon::Polisher::polish] generating consensus [===============> ] 17.243244 s [racon::Polisher::polish] generating consensus [================> ] 17.243771 s [racon::Polisher::polish] generating consensus [=================> ] 20.098997 s [racon::Polisher::polish] generating consensus [==================> ] 20.099565 s [racon::Polisher::polish] generating consensus [===================>] 21.960978 s [racon::Polisher::polish] generating consensus [====================] 25.376410 s [racon::Polisher::] total = 26.629906 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (26746 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.000802 s [racon::Polisher::initialize] loaded sequences 0.046713 s [racon::Polisher::initialize] loaded overlaps 0.000476 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.078707 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.122152 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.173366 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.216575 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.265446 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.313289 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.430699 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.488340 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.535075 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.576490 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.633442 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.684085 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.731566 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.752768 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.783191 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.889617 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.917578 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.959884 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.983983 s [racon::Polisher::initialize] aligning overlaps [====================] 1.024665 s [racon::Polisher::initialize] transformed data into windows 0.082502 s [racon::Polisher::polish] generating consensus [=> ] 0.616636 s [racon::Polisher::polish] generating consensus [==> ] 1.188663 s [racon::Polisher::polish] generating consensus [===> ] 1.603392 s [racon::Polisher::polish] generating consensus [====> ] 1.940213 s [racon::Polisher::polish] generating consensus [=====> ] 2.202951 s [racon::Polisher::polish] generating consensus [======> ] 2.429569 s [racon::Polisher::polish] generating consensus [=======> ] 2.632042 s [racon::Polisher::polish] generating consensus [========> ] 2.869416 s [racon::Polisher::polish] generating consensus [=========> ] 3.218446 s [racon::Polisher::polish] generating consensus [==========> ] 3.681521 s [racon::Polisher::polish] generating consensus [===========> ] 4.368048 s [racon::Polisher::polish] generating consensus [============> ] 5.013548 s [racon::Polisher::polish] generating consensus [=============> ] 6.049614 s [racon::Polisher::polish] generating consensus [==============> ] 7.136163 s [racon::Polisher::polish] generating consensus [===============> ] 7.919041 s [racon::Polisher::polish] generating consensus [================> ] 8.486766 s [racon::Polisher::polish] generating consensus [=================> ] 9.219380 s [racon::Polisher::polish] generating consensus [==================> ] 9.692278 s [racon::Polisher::polish] generating consensus [===================>] 10.146657 s [racon::Polisher::polish] generating consensus [====================] 12.374131 s [racon::Polisher::] total = 13.579703 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (13606 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.047222 s [racon::Polisher::initialize] loaded sequences 0.047106 s [racon::Polisher::initialize] loaded overlaps 0.013712 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.075117 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.157208 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.183782 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.230219 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.269659 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.318779 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.351550 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.390141 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.441269 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.525690 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.596984 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.645209 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.711182 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.797147 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.854114 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.930743 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.987691 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.088339 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.113020 s [racon::Polisher::initialize] aligning overlaps [====================] 1.140565 s [racon::Polisher::initialize] transformed data into windows 0.087278 s [racon::Polisher::polish] generating consensus [=> ] 0.399523 s [racon::Polisher::polish] generating consensus [==> ] 0.795235 s [racon::Polisher::polish] generating consensus [===> ] 1.195643 s [racon::Polisher::polish] generating consensus [====> ] 1.196085 s [racon::Polisher::polish] generating consensus [=====> ] 1.485947 s [racon::Polisher::polish] generating consensus [======> ] 1.669107 s [racon::Polisher::polish] generating consensus [=======> ] 1.934917 s [racon::Polisher::polish] generating consensus [========> ] 1.993972 s [racon::Polisher::polish] generating consensus [=========> ] 2.576414 s [racon::Polisher::polish] generating consensus [==========> ] 2.805911 s [racon::Polisher::polish] generating consensus [===========> ] 2.993286 s [racon::Polisher::polish] generating consensus [============> ] 3.060867 s [racon::Polisher::polish] generating consensus [=============> ] 3.289646 s [racon::Polisher::polish] generating consensus [==============> ] 3.290298 s [racon::Polisher::polish] generating consensus [===============> ] 3.826842 s [racon::Polisher::polish] generating consensus [================> ] 3.827920 s [racon::Polisher::polish] generating consensus [=================> ] 4.909402 s [racon::Polisher::polish] generating consensus [==================> ] 5.272667 s [racon::Polisher::polish] generating consensus [===================>] 5.595790 s [racon::Polisher::polish] generating consensus [====================] 5.633384 s [racon::Polisher::] total = 6.970965 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (6995 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.050381 s [racon::Polisher::initialize] loaded sequences 0.051576 s [racon::Polisher::initialize] loaded overlaps 0.013841 s [racon::Polisher::initialize] aligning overlaps [=> ] 1.320779 s [racon::Polisher::initialize] aligning overlaps [==> ] 2.224251 s [racon::Polisher::initialize] aligning overlaps [===> ] 3.107644 s [racon::Polisher::initialize] aligning overlaps [====> ] 4.341974 s [racon::Polisher::initialize] aligning overlaps [=====> ] 5.391835 s [racon::Polisher::initialize] aligning overlaps [======> ] 6.111493 s [racon::Polisher::initialize] aligning overlaps [=======> ] 7.109598 s [racon::Polisher::initialize] aligning overlaps [========> ] 8.385125 s [racon::Polisher::initialize] aligning overlaps [=========> ] 9.540199 s [racon::Polisher::initialize] aligning overlaps [==========> ] 10.710373 s [racon::Polisher::initialize] aligning overlaps [===========> ] 11.583531 s [racon::Polisher::initialize] aligning overlaps [============> ] 12.854856 s [racon::Polisher::initialize] aligning overlaps [=============> ] 14.147808 s [racon::Polisher::initialize] aligning overlaps [==============> ] 15.197604 s [racon::Polisher::initialize] aligning overlaps [===============> ] 16.691643 s [racon::Polisher::initialize] aligning overlaps [================> ] 18.046208 s [racon::Polisher::initialize] aligning overlaps [=================> ] 18.966672 s [racon::Polisher::initialize] aligning overlaps [==================> ] 20.281742 s [racon::Polisher::initialize] aligning overlaps [===================>] 21.182267 s [racon::Polisher::initialize] aligning overlaps [====================] 21.510241 s [racon::Polisher::initialize] transformed data into windows 2.265549 s [racon::Polisher::polish] generating consensus [=> ] 21.769303 s [racon::Polisher::polish] generating consensus [==> ] 37.507816 s [racon::Polisher::polish] generating consensus [===> ] 53.609637 s [racon::Polisher::polish] generating consensus [====> ] 66.284636 s [racon::Polisher::polish] generating consensus [=====> ] 81.734725 s [racon::Polisher::polish] generating consensus [======> ] 97.884205 s [racon::Polisher::polish] generating consensus [=======> ] 113.770612 s [racon::Polisher::polish] generating consensus [========> ] 126.947440 s [racon::Polisher::polish] generating consensus [=========> ] 142.392978 s [racon::Polisher::polish] generating consensus [==========> ] 161.734308 s [racon::Polisher::polish] generating consensus [===========> ] 177.240425 s [racon::Polisher::polish] generating consensus [============> ] 195.620323 s [racon::Polisher::polish] generating consensus [=============> ] 213.008204 s [racon::Polisher::polish] generating consensus [==============> ] 231.308233 s [racon::Polisher::polish] generating consensus [===============> ] 250.413923 s [racon::Polisher::polish] generating consensus [================> ] 260.765343 s [racon::Polisher::polish] generating consensus [=================> ] 280.708037 s [racon::Polisher::polish] generating consensus [==================> ] 300.172751 s [racon::Polisher::polish] generating consensus [===================>] 318.280199 s [racon::Polisher::polish] generating consensus [====================] 332.194133 s [racon::Polisher::] total = 356.091016 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (356118 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.021470 s [racon::Polisher::initialize] loaded sequences 0.020629 s [racon::Polisher::initialize] loaded overlaps 0.013520 s [racon::Polisher::initialize] aligning overlaps [=> ] 1.185618 s [racon::Polisher::initialize] aligning overlaps [==> ] 2.017556 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.854521 s [racon::Polisher::initialize] aligning overlaps [====> ] 4.453367 s [racon::Polisher::initialize] aligning overlaps [=====> ] 6.162887 s [racon::Polisher::initialize] aligning overlaps [======> ] 7.466238 s [racon::Polisher::initialize] aligning overlaps [=======> ] 9.130219 s [racon::Polisher::initialize] aligning overlaps [========> ] 11.002565 s [racon::Polisher::initialize] aligning overlaps [=========> ] 12.330666 s [racon::Polisher::initialize] aligning overlaps [==========> ] 13.622353 s [racon::Polisher::initialize] aligning overlaps [===========> ] 14.742045 s [racon::Polisher::initialize] aligning overlaps [============> ] 16.498068 s [racon::Polisher::initialize] aligning overlaps [=============> ] 17.902996 s [racon::Polisher::initialize] aligning overlaps [==============> ] 19.147968 s [racon::Polisher::initialize] aligning overlaps [===============> ] 20.568033 s [racon::Polisher::initialize] aligning overlaps [================> ] 21.830455 s [racon::Polisher::initialize] aligning overlaps [=================> ] 23.130965 s [racon::Polisher::initialize] aligning overlaps [==================> ] 24.458297 s [racon::Polisher::initialize] aligning overlaps [===================>] 25.326379 s [racon::Polisher::initialize] aligning overlaps [====================] 25.829544 s [racon::Polisher::initialize] transformed data into windows 0.022686 s [racon::Polisher::polish] generating consensus [=> ] 30.115460 s [racon::Polisher::polish] generating consensus [==> ] 53.942425 s [racon::Polisher::polish] generating consensus [===> ] 76.755438 s [racon::Polisher::polish] generating consensus [====> ] 93.184653 s [racon::Polisher::polish] generating consensus [=====> ] 112.029669 s [racon::Polisher::polish] generating consensus [======> ] 133.387526 s [racon::Polisher::polish] generating consensus [=======> ] 156.762695 s [racon::Polisher::polish] generating consensus [========> ] 173.435720 s [racon::Polisher::polish] generating consensus [=========> ] 195.407302 s [racon::Polisher::polish] generating consensus [==========> ] 221.097183 s [racon::Polisher::polish] generating consensus [===========> ] 242.667115 s [racon::Polisher::polish] generating consensus [============> ] 265.205932 s [racon::Polisher::polish] generating consensus [=============> ] 287.482337 s [racon::Polisher::polish] generating consensus [==============> ] 309.836563 s [racon::Polisher::polish] generating consensus [===============> ] 332.587773 s [racon::Polisher::polish] generating consensus [================> ] 344.885596 s [racon::Polisher::polish] generating consensus [=================> ] 374.087524 s [racon::Polisher::polish] generating consensus [==================> ] 401.169896 s [racon::Polisher::polish] generating consensus [===================>] 426.026415 s [racon::Polisher::polish] generating consensus [====================] 447.239478 s [racon::Polisher::] total = 473.150388 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (473178 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.055905 s [racon::Polisher::initialize] loaded sequences 0.047949 s [racon::Polisher::initialize] loaded overlaps 0.014350 s [racon::Polisher::initialize] aligning overlaps [=> ] 1.239162 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.982514 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.655540 s [racon::Polisher::initialize] aligning overlaps [====> ] 3.739601 s [racon::Polisher::initialize] aligning overlaps [=====> ] 4.579466 s [racon::Polisher::initialize] aligning overlaps [======> ] 5.259099 s [racon::Polisher::initialize] aligning overlaps [=======> ] 6.167865 s [racon::Polisher::initialize] aligning overlaps [========> ] 7.319376 s [racon::Polisher::initialize] aligning overlaps [=========> ] 8.565225 s [racon::Polisher::initialize] aligning overlaps [==========> ] 9.507102 s [racon::Polisher::initialize] aligning overlaps [===========> ] 10.266106 s [racon::Polisher::initialize] aligning overlaps [============> ] 11.434953 s [racon::Polisher::initialize] aligning overlaps [=============> ] 12.798988 s [racon::Polisher::initialize] aligning overlaps [==============> ] 13.877524 s [racon::Polisher::initialize] aligning overlaps [===============> ] 15.118040 s [racon::Polisher::initialize] aligning overlaps [================> ] 16.339718 s [racon::Polisher::initialize] aligning overlaps [=================> ] 17.409560 s [racon::Polisher::initialize] aligning overlaps [==================> ] 18.747443 s [racon::Polisher::initialize] aligning overlaps [===================>] 20.021858 s [racon::Polisher::initialize] aligning overlaps [====================] 20.736208 s [racon::Polisher::initialize] transformed data into windows 2.182262 s [racon::Polisher::polish] generating consensus [=> ] 20.919387 s [racon::Polisher::polish] generating consensus [==> ] 35.362411 s [racon::Polisher::polish] generating consensus [===> ] 50.445326 s [racon::Polisher::polish] generating consensus [====> ] 62.658310 s [racon::Polisher::polish] generating consensus [=====> ] 77.788195 s [racon::Polisher::polish] generating consensus [======> ] 94.842635 s [racon::Polisher::polish] generating consensus [=======> ] 110.963218 s [racon::Polisher::polish] generating consensus [========> ] 123.101979 s [racon::Polisher::polish] generating consensus [=========> ] 137.834939 s [racon::Polisher::polish] generating consensus [==========> ] 155.919156 s [racon::Polisher::polish] generating consensus [===========> ] 171.417144 s [racon::Polisher::polish] generating consensus [============> ] 188.546988 s [racon::Polisher::polish] generating consensus [=============> ] 205.795435 s [racon::Polisher::polish] generating consensus [==============> ] 233.338753 s [racon::Polisher::polish] generating consensus [===============> ] 259.850724 s [racon::Polisher::polish] generating consensus [================> ] 274.762623 s [racon::Polisher::polish] generating consensus [=================> ] 295.827989 s [racon::Polisher::polish] generating consensus [==================> ] 314.193166 s [racon::Polisher::polish] generating consensus [===================>] 331.586599 s [racon::Polisher::polish] generating consensus [====================] 343.530604 s [racon::Polisher::] total = 366.570921 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (366602 ms) [----------] 10 tests from RaconPolishingTest (1312679 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (1312729 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake cd obj-i686-linux-gnu && make -j11 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/racon-1.5.0/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_i386.deb'. dpkg-deb: building package 'racon' in '../racon_1.5.0-3_i386.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_i386.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/35202 and its subdirectories I: Current time: Thu Aug 29 17:27:35 -12 2024 I: pbuilder-time-stamp: 1724995655