I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 16 17:59:32 -12 2025 I: pbuilder-time-stamp: 1760680772 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [coot_1.1.09+dfsg-2.dsc] I: copying [./coot_1.1.09+dfsg.orig.tar.xz] I: copying [./coot_1.1.09+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Jul 22 08:09:42 2024 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./coot_1.1.09+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting coot in coot-1.1.09+dfsg dpkg-source: info: unpacking coot_1.1.09+dfsg.orig.tar.xz dpkg-source: info: unpacking coot_1.1.09+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying drop-nonexistent-RDKit-libraries.patch dpkg-source: info: applying system-fonts.patch dpkg-source: info: applying no-RPATH.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/8468/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='57ab8f5cba2f4456b4ed44ea30eebc17' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='8468' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.oLQ1VF2T/pbuilderrc_TUmM --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.oLQ1VF2T/b1 --logfile b1/build.log coot_1.1.09+dfsg-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-25-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.106-3 (2024-08-26) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/8468/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: bc, cmake, debhelper-compat (= 13), dh-sequence-python3, gemmi, gemmi-dev, ghostscript, imagemagick | graphicsmagick-imagemagick-compat, libasound2-dev, libblas-dev, libboost-dev, libboost-iostreams-dev, libboost-python-dev, libboost-system-dev, libboost-thread-dev, libcairo-dev, libccp4-data, libclipper-dev, libcurl4-gnutls-dev | libcurl-dev, libdw-dev, libeigen3-dev, libelf-dev, libgl-dev, libglib2.0-dev, libglm-dev, libgsl-dev, libgtkmm-4.0-dev, libmmdb2-dev, libpng-dev, libpython3-dev, librdkit-dev, libsqlite3-dev, libssm-dev, libvorbis-dev, nanobind-dev, python-gi-dev, python3-rdkit, python3-requests, sharutils, swig, tao-pegtl-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19769 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on bc; however: Package bc is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on gemmi; however: Package gemmi is not installed. pbuilder-satisfydepends-dummy depends on gemmi-dev; however: Package gemmi-dev is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on imagemagick | graphicsmagick-imagemagick-compat; however: Package imagemagick is not installed. Package graphicsmagick-imagemagick-compat is not installed. pbuilder-satisfydepends-dummy depends on libasound2-dev; however: Package libasound2-dev is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev; however: Package libblas-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however: Package libboost-thread-dev is not installed. pbuilder-satisfydepends-dummy depends on libcairo-dev; however: Package libcairo-dev is not installed. pbuilder-satisfydepends-dummy depends on libccp4-data; however: Package libccp4-data is not installed. pbuilder-satisfydepends-dummy depends on libclipper-dev; however: Package libclipper-dev is not installed. pbuilder-satisfydepends-dummy depends on libcurl4-gnutls-dev | libcurl-dev; however: Package libcurl4-gnutls-dev is not installed. Package libcurl-dev is not installed. pbuilder-satisfydepends-dummy depends on libdw-dev; however: Package libdw-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libelf-dev; however: Package libelf-dev is not installed. pbuilder-satisfydepends-dummy depends on libgl-dev; however: Package libgl-dev is not installed. pbuilder-satisfydepends-dummy depends on libglib2.0-dev; however: Package libglib2.0-dev is not installed. pbuilder-satisfydepends-dummy depends on libglm-dev; however: Package libglm-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtkmm-4.0-dev; however: Package libgtkmm-4.0-dev is not installed. pbuilder-satisfydepends-dummy depends on libmmdb2-dev; however: Package libmmdb2-dev is not installed. pbuilder-satisfydepends-dummy depends on libpng-dev; however: Package libpng-dev is not installed. pbuilder-satisfydepends-dummy depends on libpython3-dev; however: Package libpython3-dev is not installed. pbuilder-satisfydepends-dummy depends on librdkit-dev; however: Package librdkit-dev is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however: Package libsqlite3-dev is not installed. pbuilder-satisfydepends-dummy depends on libssm-dev; however: Package libssm-dev is not installed. pbuilder-satisfydepends-dummy depends on libvorbis-dev; however: Package libvorbis-dev is not installed. pbuilder-satisfydepends-dummy depends on nanobind-dev; however: Package nanobind-dev is not installed. pbuilder-satisfydepends-dummy depends on python-gi-dev; however: Package python-gi-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-rdkit; however: Package python3-rdkit is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on sharutils; however: Package sharutils is not installed. pbuilder-satisfydepends-dummy depends on swig; however: Package swig is not installed. pbuilder-satisfydepends-dummy depends on tao-pegtl-dev; however: Package tao-pegtl-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bc{a} bsdextrautils{a} ca-certificates{a} cmake{a} cmake-data{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} fftw-dev{a} fftw2{a} file{a} fontconfig{a} fontconfig-config{a} fonts-freefont-ttf{a} fonts-urw-base35{a} gemmi{a} gemmi-dev{a} gettext{a} gettext-base{a} ghostscript{a} gir1.2-freedesktop{a} gir1.2-freedesktop-dev{a} gir1.2-gdkpixbuf-2.0{a} gir1.2-girepository-2.0{a} gir1.2-glib-2.0{a} gir1.2-glib-2.0-dev{a} gir1.2-graphene-1.0{a} gir1.2-gtk-4.0{a} gir1.2-harfbuzz-0.0{a} gir1.2-pango-1.0{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} icu-devtools{a} imagemagick{a} imagemagick-6-common{a} imagemagick-6.q16{a} intltool-debian{a} libapparmor1{a} libarchive-zip-perl{a} libarchive13t64{a} libasound2-data{a} libasound2-dev{a} libasound2t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas-dev{a} libblas3{a} libblkid-dev{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-python-dev{a} libboost-python1.83-dev{a} libboost-python1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcairo-gobject2{a} libcairo-script-interpreter2{a} libcairo2{a} libcairo2-dev{a} libcairomm-1.16-1{a} libcairomm-1.16-dev{a} libccp4-data{a} libccp4-dev{a} libccp4c0t64{a} libccp4f0t64{a} libclipper-dev{a} libclipper2{a} libcloudproviders0{a} libcom-err2{a} libcoordgen3{a} libcpdb-frontend2t64{a} libcpdb2t64{a} libcups2t64{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdatrie-dev{a} libdatrie1{a} libdav1d7{a} libdbus-1-3{a} libdconf1{a} libde265-0{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libdw-dev{a} libdw1t64{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libegl1-mesa-dev{a} libeigen3-dev{a} libelf-dev{a} libelf1t64{a} libepoxy-dev{a} libepoxy0{a} libevent-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libffi-dev{a} libfftw3-double3{a} libfile-stripnondeterminism-perl{a} libfontconfig-dev{a} libfontconfig1{a} libfontenc1{a} libfreetype-dev{a} libfreetype6{a} libfribidi-dev{a} libfribidi0{a} libgbm1{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf-2.0-dev{a} libgdk-pixbuf2.0-bin{a} libgdk-pixbuf2.0-common{a} libgfortran5{a} libgirepository-1.0-1{a} libgirepository-2.0-0{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libgles-dev{a} libgles1{a} libgles2{a} libglib2.0-0t64{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libglibmm-2.68-1t64{a} libglibmm-2.68-dev{a} libglm-dev{a} libglvnd-core-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgraphene-1.0-0{a} libgraphene-1.0-dev{a} libgraphite2-3{a} libgraphite2-dev{a} libgs-common{a} libgs10{a} libgs10-common{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libgssapi-krb5-2{a} libgtk-4-1{a} libgtk-4-common{a} libgtk-4-dev{a} libgtkmm-4.0-0{a} libgtkmm-4.0-dev{a} libharfbuzz-cairo0{a} libharfbuzz-dev{a} libharfbuzz-gobject0{a} libharfbuzz-icu0{a} libharfbuzz-subset0{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhwloc15{a} libice-dev{a} libice6{a} libicu-dev{a} libicu72{a} libidn12{a} libidn2-dev{a} libijs-0.35{a} libinchi1.07{a} libjbig-dev{a} libjbig0{a} libjbig2dec0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap-2.5-0{a} liblerc-dev{a} liblerc4{a} libllvm18{a} liblqr-1-0{a} libltdl7{a} liblzma-dev{a} liblzo2-2{a} libmaeparser1{a} libmagic-mgc{a} libmagic1t64{a} libmagickcore-6.q16-7t64{a} libmagickwand-6.q16-7t64{a} libmmdb2-0{a} libmmdb2-dev{a} libmount-dev{a} libmpich12{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libnsl2{a} libogg-dev{a} libogg0{a} libopengl-dev{a} libopengl0{a} libopenjp2-7{a} libp11-kit-dev{a} libpam-systemd{a} libpango-1.0-0{a} libpango1.0-dev{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpangomm-2.48-1t64{a} libpangomm-2.48-dev{a} libpangoxft-1.0-0{a} libpaper1{a} libpciaccess0{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpixman-1-dev{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libraw23t64{a} librdkit-dev{a} librdkit1t64{a} libreadline8t64{a} librhash0{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libselinux1-dev{a} libsensors-config{a} libsensors5{a} libsepol-dev{a} libsharpyuv-dev{a} libsharpyuv0{a} libsigc++-3.0-0{a} libsigc++-3.0-dev{a} libsm-dev{a} libsm6{a} libsqlite3-dev{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libssm-dev{a} libssm2{a} libsysprof-capture-4-dev{a} libsystemd-shared{a} libtasn1-6-dev{a} libthai-data{a} libthai-dev{a} libthai0{a} libtiff-dev{a} libtiff6{a} libtiffxx6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunbound8{a} libuv1t64{a} libvorbis-dev{a} libvorbis0a{a} libvorbisenc2{a} libvorbisfile3{a} libvulkan-dev{a} libvulkan1{a} libwayland-bin{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-dev{a} libwayland-egl1{a} libwayland-server0{a} libwebp-dev{a} libwebp7{a} libwebpdecoder3{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-render0-dev{a} libxcb-shm0{a} libxcb-shm0-dev{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxcomposite-dev{a} libxcomposite1{a} libxcursor-dev{a} libxcursor1{a} libxdamage-dev{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxft-dev{a} libxft2{a} libxi-dev{a} libxi6{a} libxinerama-dev{a} libxinerama1{a} libxkbcommon-dev{a} libxkbcommon0{a} libxml2{a} libxrandr-dev{a} libxrandr2{a} libxrender-dev{a} libxrender1{a} libxshmfence1{a} libxt6t64{a} libxxf86vm1{a} libz3-4{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} nanobind-dev{a} netbase{a} nettle-dev{a} openssl{a} pango1.0-tools{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} poppler-data{a} procps{a} python-gi-dev{a} python3{a} python3-autocommand{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-dev{a} python3-gi{a} python3-idna{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pkg-resources{a} python3-rdkit{a} python3-requests{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} rdkit-data{a} readline-common{a} robin-map-dev{a} sensible-utils{a} sfftw-dev{a} sfftw2{a} shared-mime-info{a} sharutils{a} swig{a} systemd{a} systemd-sysv{a} tao-pegtl-dev{a} tzdata{a} ucf{a} uuid-dev{a} wayland-protocols{a} x11-common{a} x11proto-core-dev{a} x11proto-dev{a} xfonts-encodings{a} xfonts-utils{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf bzip2-doc chrony cpdb-backend-cups curl fonts-droid-fallback iso-codes javascript-common krb5-locales libarchive-cpio-perl libgtk-4-bin libgtk-4-media-gstreamer libheif-plugin-aomenc libheif-plugin-x265 libhwloc-plugins libkmod2 libldap-common libltdl-dev libmagickcore-6.q16-7-extra libmail-sendmail-perl libnss-systemd libpaper-utils libpng-tools librsvg2-common libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx mesa-vulkan-drivers netpbm ntpsec openntpd psmisc publicsuffix systemd-cryptsetup systemd-timesyncd wget xdg-user-dirs 0 packages upgraded, 468 newly installed, 0 to remove and 0 not upgraded. Need to get 268 MB of archives. After unpacking 1271 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 libapparmor1 i386 3.1.7-1+b1 [43.0 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libsystemd-shared i386 256.6-1 [2120 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 systemd i386 256.6-1 [3494 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 systemd-sysv i386 256.6-1 [58.2 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 libdbus-1-3 i386 1.14.10-4+b1 [217 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 dbus-bin i386 1.14.10-4+b1 [107 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 dbus-session-bus-common all 1.14.10-4 [79.0 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.3-1 [107 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 dbus-daemon i386 1.14.10-4+b1 [195 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 dbus-system-bus-common all 1.14.10-4 [80.1 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 dbus i386 1.14.10-4+b1 [101 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 libfftw3-double3 i386 3.3.10-1+b3 [635 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b4 [309 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 libpng16-16t64 i386 1.6.43-5 [286 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 libfreetype6 i386 2.13.3+dfsg-1 [464 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 fonts-freefont-ttf all 20211204+svn4273-2 [5318 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 libfontenc1 i386 1:1.1.8-1 [23.1 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 x11-common all 1:7.7+23.1 [216 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 xfonts-utils i386 1:7.7+6 [95.2 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 22 http://deb.debian.org/debian unstable/main i386 fontconfig-config i386 2.15.0-1.1 [317 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 libfontconfig1 i386 2.15.0-1.1 [401 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libsharpyuv0 i386 1.4.0-0.1 [113 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 libdav1d7 i386 1.4.3-1 [327 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 libheif-plugin-dav1d i386 1.18.1-2 [11.0 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 libde265-0 i386 1.0.15-1+b2 [199 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 libheif-plugin-libde265 i386 1.18.1-2 [14.6 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 libheif1 i386 1.18.1-2 [327 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 libjbig0 i386 2.1-6.1+b1 [31.8 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 libjpeg62-turbo i386 1:2.1.5-3 [169 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 liblcms2-2 i386 2.14-2+b1 [165 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 libglib2.0-0t64 i386 2.82.0-1 [1568 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 liblqr-1-0 i386 0.4.2-2.1+b1 [31.8 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 libltdl7 i386 2.4.7-7+b1 [395 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 libopenjp2-7 i386 2.5.0-2+b3 [197 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 libraw23t64 i386 0.21.2-2.1 [407 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 libdeflate0 i386 1.21-1 [48.0 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 liblerc4 i386 4.0.0+ds-4+b1 [180 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 libwebp7 i386 1.4.0-0.1 [318 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 libtiff6 i386 4.5.1+git230720-5 [339 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 libwebpdemux2 i386 1.4.0-0.1 [111 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 libwebpmux3 i386 1.4.0-0.1 [125 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 libxau6 i386 1:1.0.9-1+b1 [18.5 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 libxdmcp6 i386 1:1.1.2-3+b1 [24.8 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 libxcb1 i386 1.17.0-2 [148 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 libx11-data all 2:1.8.7-1 [328 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 libx11-6 i386 2:1.8.7-1+b1 [822 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-5 [9550 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg-3+b1 [704 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 imagemagick-6-common all 8:6.9.13.12+dfsg1-1 [67.3 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 libmagickcore-6.q16-7t64 i386 8:6.9.13.12+dfsg1-1 [1767 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 libmagickwand-6.q16-7t64 i386 8:6.9.13.12+dfsg1-1 [298 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 poppler-data all 0.4.12-1 [1601 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 libpython3.12-minimal i386 3.12.6-1 [813 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 python3.12-minimal i386 3.12.6-1 [2242 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 python3-minimal i386 3.12.5-1 [26.7 kB] Get: 59 http://deb.debian.org/debian unstable/main i386 media-types all 10.1.0 [26.9 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 netbase all 6.4 [12.8 kB] Get: 61 http://deb.debian.org/debian unstable/main i386 tzdata all 2024a-4 [255 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.1-1 [23.1 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 65 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-3 [9432 B] Get: 66 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 67 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 68 http://deb.debian.org/debian unstable/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 69 http://deb.debian.org/debian unstable/main i386 libtirpc3t64 i386 1.3.4+ds-1.3 [90.2 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 libnsl2 i386 1.3.0-3+b2 [42.4 kB] Get: 71 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-5 [69.3 kB] Get: 72 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-5 [173 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 libpython3.12-stdlib i386 3.12.6-1 [1961 kB] Get: 74 http://deb.debian.org/debian unstable/main i386 python3.12 i386 3.12.6-1 [669 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 libpython3-stdlib i386 3.12.5-1 [9588 B] Get: 76 http://deb.debian.org/debian unstable/main i386 python3 i386 3.12.5-1 [27.6 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 libproc2-0 i386 2:4.0.4-5 [65.6 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 procps i386 2:4.0.4-5 [875 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 80 http://deb.debian.org/debian unstable/main i386 openssl i386 3.3.2-1 [1386 kB] Get: 81 http://deb.debian.org/debian unstable/main i386 ca-certificates all 20240203 [158 kB] Get: 82 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 83 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 84 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3 [42.9 kB] Get: 85 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 86 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 87 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 88 http://deb.debian.org/debian unstable/main i386 libpam-systemd i386 256.6-1 [290 kB] Get: 89 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.2-8 [102 kB] Get: 90 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 91 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 92 http://deb.debian.org/debian unstable/main i386 ucf all 3.0043+nmu1 [55.2 kB] Get: 93 http://deb.debian.org/debian unstable/main i386 libgdk-pixbuf2.0-common all 2.42.12+dfsg-1 [311 kB] Get: 94 http://deb.debian.org/debian unstable/main i386 shared-mime-info i386 2.4-5 [760 kB] Get: 95 http://deb.debian.org/debian unstable/main i386 libgdk-pixbuf-2.0-0 i386 2.42.12+dfsg-1 [147 kB] Get: 96 http://deb.debian.org/debian unstable/main i386 gtk-update-icon-cache i386 3.24.43-3 [47.4 kB] Get: 97 http://deb.debian.org/debian unstable/main i386 hicolor-icon-theme all 0.18-1 [12.0 kB] Get: 98 http://deb.debian.org/debian unstable/main i386 adwaita-icon-theme all 47~beta-1 [463 kB] Get: 99 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB] Get: 100 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 101 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 102 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 103 http://deb.debian.org/debian unstable/main i386 autopoint all 0.22.5-2 [723 kB] Get: 104 http://deb.debian.org/debian unstable/main i386 bc i386 1.07.1-4 [105 kB] Get: 105 http://deb.debian.org/debian unstable/main i386 libarchive13t64 i386 3.7.4-1 [390 kB] Get: 106 http://deb.debian.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB] Get: 107 http://deb.debian.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB] Get: 108 http://deb.debian.org/debian unstable/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3 [200 kB] Get: 109 http://deb.debian.org/debian unstable/main i386 libnghttp2-14 i386 1.63.0-1 [82.7 kB] Get: 110 http://deb.debian.org/debian unstable/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] Get: 111 http://deb.debian.org/debian unstable/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] Get: 112 http://deb.debian.org/debian unstable/main i386 libssh2-1t64 i386 1.11.0-7 [226 kB] Get: 113 http://deb.debian.org/debian unstable/main i386 libcurl4t64 i386 8.10.0-2 [391 kB] Get: 114 http://deb.debian.org/debian unstable/main i386 libjsoncpp25 i386 1.9.5-6+b2 [89.2 kB] Get: 115 http://deb.debian.org/debian unstable/main i386 librhash0 i386 1.4.3-3+b1 [143 kB] Get: 116 http://deb.debian.org/debian unstable/main i386 libuv1t64 i386 1.48.0-6 [157 kB] Get: 117 http://deb.debian.org/debian unstable/main i386 cmake-data all 3.30.3-1 [2221 kB] Get: 118 http://deb.debian.org/debian unstable/main i386 cmake i386 3.30.3-1 [12.5 MB] Get: 119 http://deb.debian.org/debian unstable/main i386 dbus-user-session i386 1.14.10-4+b1 [79.1 kB] Get: 120 http://deb.debian.org/debian unstable/main i386 libdconf1 i386 0.40.0-4+b2 [43.6 kB] Get: 121 http://deb.debian.org/debian unstable/main i386 dconf-service i386 0.40.0-4+b2 [35.0 kB] Get: 122 http://deb.debian.org/debian unstable/main i386 dconf-gsettings-backend i386 0.40.0-4+b2 [30.7 kB] Get: 123 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 124 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-7 [517 kB] Get: 125 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 126 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 127 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 128 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 129 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.191-2 [194 kB] Get: 130 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 131 http://deb.debian.org/debian unstable/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 132 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 133 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 134 http://deb.debian.org/debian unstable/main i386 debhelper all 13.20 [915 kB] Get: 135 http://deb.debian.org/debian unstable/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 136 http://deb.debian.org/debian unstable/main i386 python3-more-itertools all 10.4.0-1 [63.7 kB] Get: 137 http://deb.debian.org/debian unstable/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 138 http://deb.debian.org/debian unstable/main i386 python3-typeguard all 4.3.0-1 [36.5 kB] Get: 139 http://deb.debian.org/debian unstable/main i386 python3-inflect all 7.3.1-1 [42.2 kB] Get: 140 http://deb.debian.org/debian unstable/main i386 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 141 http://deb.debian.org/debian unstable/main i386 python3-jaraco.functools all 4.0.2-1 [11.7 kB] Get: 142 http://deb.debian.org/debian unstable/main i386 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 143 http://deb.debian.org/debian unstable/main i386 python3-zipp all 3.20.1-1 [10.2 kB] Get: 144 http://deb.debian.org/debian unstable/main i386 python3-setuptools all 74.1.2-2 [736 kB] Get: 145 http://deb.debian.org/debian unstable/main i386 dh-python all 6.20240824 [109 kB] Get: 146 http://deb.debian.org/debian unstable/main i386 libgfortran5 i386 14.2.0-4 [735 kB] Get: 147 http://deb.debian.org/debian unstable/main i386 libhwloc15 i386 2.11.0-2 [175 kB] Get: 148 http://deb.debian.org/debian unstable/main i386 libmpich12 i386 4.2.0-14 [1518 kB] Get: 149 http://deb.debian.org/debian unstable/main i386 fftw2 i386 2.1.5-7 [196 kB] Get: 150 http://deb.debian.org/debian unstable/main i386 fftw-dev i386 2.1.5-7 [234 kB] Get: 151 http://deb.debian.org/debian unstable/main i386 fontconfig i386 2.15.0-1.1 [462 kB] Get: 152 http://deb.debian.org/debian unstable/main i386 gemmi i386 0.6.5+ds-2 [1324 kB] Get: 153 http://deb.debian.org/debian unstable/main i386 tao-pegtl-dev all 3.2.7-1 [69.4 kB] Get: 154 http://deb.debian.org/debian unstable/main i386 gemmi-dev i386 0.6.5+ds-2 [1197 kB] Get: 155 http://deb.debian.org/debian unstable/main i386 libgs-common all 10.03.1~dfsg-2 [148 kB] Get: 156 http://deb.debian.org/debian unstable/main i386 libgs10-common all 10.03.1~dfsg-2 [474 kB] Get: 157 http://deb.debian.org/debian unstable/main i386 libavahi-common-data i386 0.8-13+b2 [112 kB] Get: 158 http://deb.debian.org/debian unstable/main i386 libavahi-common3 i386 0.8-13+b2 [45.3 kB] Get: 159 http://deb.debian.org/debian unstable/main i386 libavahi-client3 i386 0.8-13+b2 [49.3 kB] Get: 160 http://deb.debian.org/debian unstable/main i386 libcups2t64 i386 2.4.10-1 [265 kB] Get: 161 http://deb.debian.org/debian unstable/main i386 libidn12 i386 1.42-2 [81.3 kB] Get: 162 http://deb.debian.org/debian unstable/main i386 libijs-0.35 i386 0.35-15.1+b1 [15.7 kB] Get: 163 http://deb.debian.org/debian unstable/main i386 libjbig2dec0 i386 0.20-1+b2 [66.5 kB] Get: 164 http://deb.debian.org/debian unstable/main i386 libpaper1 i386 1.1.29+b1 [13.0 kB] Get: 165 http://deb.debian.org/debian unstable/main i386 libice6 i386 2:1.0.10-1+b1 [58.6 kB] Get: 166 http://deb.debian.org/debian unstable/main i386 libsm6 i386 2:1.2.3-1+b1 [33.9 kB] Get: 167 http://deb.debian.org/debian unstable/main i386 libxt6t64 i386 1:1.2.1-1.2 [193 kB] Get: 168 http://deb.debian.org/debian unstable/main i386 libgs10 i386 10.03.1~dfsg-2 [2687 kB] Get: 169 http://deb.debian.org/debian unstable/main i386 ghostscript i386 10.03.1~dfsg-2 [50.3 kB] Get: 170 http://deb.debian.org/debian unstable/main i386 gir1.2-glib-2.0 i386 2.82.0-1 [191 kB] Get: 171 http://deb.debian.org/debian unstable/main i386 libpixman-1-0 i386 0.42.2-1+b1 [555 kB] Get: 172 http://deb.debian.org/debian unstable/main i386 libxcb-render0 i386 1.17.0-2 [116 kB] Get: 173 http://deb.debian.org/debian unstable/main i386 libxcb-shm0 i386 1.17.0-2 [105 kB] Get: 174 http://deb.debian.org/debian unstable/main i386 libxrender1 i386 1:0.9.10-1.1+b1 [28.8 kB] Get: 175 http://deb.debian.org/debian unstable/main i386 libcairo2 i386 1.18.2-1 [591 kB] Get: 176 http://deb.debian.org/debian unstable/main i386 libcairo-gobject2 i386 1.18.2-1 [129 kB] Get: 177 http://deb.debian.org/debian unstable/main i386 gir1.2-freedesktop i386 1.80.1-4 [47.1 kB] Get: 178 http://deb.debian.org/debian unstable/main i386 gir1.2-glib-2.0-dev i386 2.82.0-1 [901 kB] Get: 179 http://deb.debian.org/debian unstable/main i386 gir1.2-freedesktop-dev i386 1.80.1-4 [42.5 kB] Get: 180 http://deb.debian.org/debian unstable/main i386 gir1.2-gdkpixbuf-2.0 i386 2.42.12+dfsg-1 [14.0 kB] Get: 181 http://deb.debian.org/debian unstable/main i386 libgirepository-1.0-1 i386 1.80.1-4 [121 kB] Get: 182 http://deb.debian.org/debian unstable/main i386 gir1.2-girepository-2.0 i386 1.80.1-4 [37.8 kB] Get: 183 http://deb.debian.org/debian unstable/main i386 libgraphene-1.0-0 i386 1.10.8-4 [56.6 kB] Get: 184 http://deb.debian.org/debian unstable/main i386 gir1.2-graphene-1.0 i386 1.10.8-4 [12.8 kB] Get: 185 http://deb.debian.org/debian unstable/main i386 libgraphite2-3 i386 1.3.14-2 [77.7 kB] Get: 186 http://deb.debian.org/debian unstable/main i386 libharfbuzz0b i386 9.0.0-1 [500 kB] Get: 187 http://deb.debian.org/debian unstable/main i386 libharfbuzz-gobject0 i386 9.0.0-1 [30.0 kB] Get: 188 http://deb.debian.org/debian unstable/main i386 gir1.2-harfbuzz-0.0 i386 9.0.0-1 [41.6 kB] Get: 189 http://deb.debian.org/debian unstable/main i386 libfribidi0 i386 1.0.15-1 [72.4 kB] Get: 190 http://deb.debian.org/debian unstable/main i386 libthai-data all 0.1.29-2 [168 kB] Get: 191 http://deb.debian.org/debian unstable/main i386 libdatrie1 i386 0.2.13-3 [39.5 kB] Get: 192 http://deb.debian.org/debian unstable/main i386 libthai0 i386 0.1.29-2 [50.1 kB] Get: 193 http://deb.debian.org/debian unstable/main i386 libpango-1.0-0 i386 1.54.0+ds-2 [230 kB] Get: 194 http://deb.debian.org/debian unstable/main i386 libpangoft2-1.0-0 i386 1.54.0+ds-2 [57.9 kB] Get: 195 http://deb.debian.org/debian unstable/main i386 libpangocairo-1.0-0 i386 1.54.0+ds-2 [36.0 kB] Get: 196 http://deb.debian.org/debian unstable/main i386 libxft2 i386 2.3.6-1+b1 [55.3 kB] Get: 197 http://deb.debian.org/debian unstable/main i386 libpangoxft-1.0-0 i386 1.54.0+ds-2 [27.9 kB] Get: 198 http://deb.debian.org/debian unstable/main i386 gir1.2-pango-1.0 i386 1.54.0+ds-2 [38.6 kB] Get: 199 http://deb.debian.org/debian unstable/main i386 liblzo2-2 i386 2.10-3 [57.6 kB] Get: 200 http://deb.debian.org/debian unstable/main i386 libcairo-script-interpreter2 i386 1.18.2-1 [62.5 kB] Get: 201 http://deb.debian.org/debian unstable/main i386 libcloudproviders0 i386 0.3.6-1 [30.5 kB] Get: 202 http://deb.debian.org/debian unstable/main i386 libcpdb2t64 i386 2.0~b5-1.2+b2 [27.6 kB] Get: 203 http://deb.debian.org/debian unstable/main i386 libcpdb-frontend2t64 i386 2.0~b5-1.2+b2 [25.7 kB] Get: 204 http://deb.debian.org/debian unstable/main i386 libepoxy0 i386 1.5.10-1+b2 [196 kB] Get: 205 http://deb.debian.org/debian unstable/main i386 libvulkan1 i386 1.3.290.0-1 [136 kB] Get: 206 http://deb.debian.org/debian unstable/main i386 libwayland-client0 i386 1.23.0-1 [26.9 kB] Get: 207 http://deb.debian.org/debian unstable/main i386 libwayland-egl1 i386 1.23.0-1 [5468 B] Get: 208 http://deb.debian.org/debian unstable/main i386 libxfixes3 i386 1:6.0.0-2+b1 [20.7 kB] Get: 209 http://deb.debian.org/debian unstable/main i386 libxcursor1 i386 1:1.2.2-1 [38.5 kB] Get: 210 http://deb.debian.org/debian unstable/main i386 libxdamage1 i386 1:1.1.6-1+b1 [15.6 kB] Get: 211 http://deb.debian.org/debian unstable/main i386 libxi6 i386 2:1.8.1-1 [81.0 kB] Get: 212 http://deb.debian.org/debian unstable/main i386 libxinerama1 i386 2:1.1.4-3+b1 [16.3 kB] Get: 213 http://deb.debian.org/debian unstable/main i386 xkb-data all 2.42-1 [790 kB] Get: 214 http://deb.debian.org/debian unstable/main i386 libxkbcommon0 i386 1.6.0-1+b1 [115 kB] Get: 215 http://deb.debian.org/debian unstable/main i386 libxrandr2 i386 2:1.5.4-1 [37.7 kB] Get: 216 http://deb.debian.org/debian unstable/main i386 libglvnd0 i386 1.7.0-1+b1 [44.4 kB] Get: 217 http://deb.debian.org/debian unstable/main i386 libgles2 i386 1.7.0-1+b1 [16.8 kB] Get: 218 http://deb.debian.org/debian unstable/main i386 libgtk-4-common all 4.14.4+ds-8 [2490 kB] Get: 219 http://deb.debian.org/debian unstable/main i386 libgtk-4-1 i386 4.14.4+ds-8 [3335 kB] Get: 220 http://deb.debian.org/debian unstable/main i386 gir1.2-gtk-4.0 i386 4.14.4+ds-8 [211 kB] Get: 221 http://deb.debian.org/debian unstable/main i386 icu-devtools i386 72.1-5 [216 kB] Get: 222 http://deb.debian.org/debian unstable/main i386 imagemagick-6.q16 i386 8:6.9.13.12+dfsg1-1 [290 kB] Get: 223 http://deb.debian.org/debian unstable/main i386 imagemagick i386 8:6.9.13.12+dfsg1-1 [19.6 kB] Get: 224 http://deb.debian.org/debian unstable/main i386 libasound2-data all 1.2.12-1 [21.0 kB] Get: 225 http://deb.debian.org/debian unstable/main i386 libasound2t64 i386 1.2.12-1 [395 kB] Get: 226 http://deb.debian.org/debian unstable/main i386 libasound2-dev i386 1.2.12-1 [116 kB] Get: 227 http://deb.debian.org/debian unstable/main i386 libblas3 i386 3.12.0-3 [140 kB] Get: 228 http://deb.debian.org/debian unstable/main i386 libblas-dev i386 3.12.0-3 [152 kB] Get: 229 http://deb.debian.org/debian unstable/main i386 uuid-dev i386 2.40.2-8 [47.2 kB] Get: 230 http://deb.debian.org/debian unstable/main i386 libblkid-dev i386 2.40.2-8 [227 kB] Get: 231 http://deb.debian.org/debian unstable/main i386 libboost1.83-dev i386 1.83.0-3.2 [10.6 MB] Get: 232 http://deb.debian.org/debian unstable/main i386 libboost-atomic1.83.0 i386 1.83.0-3.2 [234 kB] Get: 233 http://deb.debian.org/debian unstable/main i386 libboost-atomic1.83-dev i386 1.83.0-3.2 [235 kB] Get: 234 http://deb.debian.org/debian unstable/main i386 libboost-chrono1.83.0t64 i386 1.83.0-3.2 [241 kB] Get: 235 http://deb.debian.org/debian unstable/main i386 libboost-chrono1.83-dev i386 1.83.0-3.2 [247 kB] Get: 236 http://deb.debian.org/debian unstable/main i386 libboost-date-time1.83.0 i386 1.83.0-3.2 [230 kB] Get: 237 http://deb.debian.org/debian unstable/main i386 libboost-serialization1.83.0 i386 1.83.0-3.2 [343 kB] Get: 238 http://deb.debian.org/debian unstable/main i386 libboost-serialization1.83-dev i386 1.83.0-3.2 [386 kB] Get: 239 http://deb.debian.org/debian unstable/main i386 libboost-date-time1.83-dev i386 1.83.0-3.2 [239 kB] Get: 240 http://deb.debian.org/debian unstable/main i386 libboost-dev i386 1.83.0.2+b2 [3840 B] Get: 241 http://deb.debian.org/debian unstable/main i386 libboost-regex1.83.0 i386 1.83.0-3.2 [329 kB] Get: 242 http://deb.debian.org/debian unstable/main i386 libicu-dev i386 72.1-5 [10.6 MB] Get: 243 http://deb.debian.org/debian unstable/main i386 libboost-regex1.83-dev i386 1.83.0-3.2 [347 kB] Get: 244 http://deb.debian.org/debian unstable/main i386 libboost-iostreams1.83-dev i386 1.83.0-3.2 [264 kB] Get: 245 http://deb.debian.org/debian unstable/main i386 libboost-iostreams-dev i386 1.83.0.2+b2 [3588 B] Get: 246 http://deb.debian.org/debian unstable/main i386 libboost-python1.83.0 i386 1.83.0-3.2 [312 kB] Get: 247 http://deb.debian.org/debian unstable/main i386 libpython3.12t64 i386 3.12.6-1 [2168 kB] Get: 248 http://deb.debian.org/debian unstable/main i386 libexpat1-dev i386 2.6.3-1 [164 kB] Get: 249 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1 [915 kB] Get: 250 http://deb.debian.org/debian unstable/main i386 libpython3.12-dev i386 3.12.6-1 [5284 kB] Get: 251 http://deb.debian.org/debian unstable/main i386 libpython3-dev i386 3.12.5-1 [9852 B] Get: 252 http://deb.debian.org/debian unstable/main i386 python3.12-dev i386 3.12.6-1 [506 kB] Get: 253 http://deb.debian.org/debian unstable/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 254 http://deb.debian.org/debian unstable/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 255 http://deb.debian.org/debian unstable/main i386 libjs-sphinxdoc all 7.4.7-3 [158 kB] Get: 256 http://deb.debian.org/debian unstable/main i386 python3-dev i386 3.12.5-1 [26.2 kB] Get: 257 http://deb.debian.org/debian unstable/main i386 libboost-python1.83-dev i386 1.83.0-3.2 [336 kB] Get: 258 http://deb.debian.org/debian unstable/main i386 libboost-python-dev i386 1.83.0.2+b2 [3900 B] Get: 259 http://deb.debian.org/debian unstable/main i386 libboost-system1.83.0 i386 1.83.0-3.2 [230 kB] Get: 260 http://deb.debian.org/debian unstable/main i386 libboost-system1.83-dev i386 1.83.0-3.2 [231 kB] Get: 261 http://deb.debian.org/debian unstable/main i386 libboost-system-dev i386 1.83.0.2+b2 [3740 B] Get: 262 http://deb.debian.org/debian unstable/main i386 libboost-thread1.83.0 i386 1.83.0-3.2 [271 kB] Get: 263 http://deb.debian.org/debian unstable/main i386 libboost-thread1.83-dev i386 1.83.0-3.2 [279 kB] Get: 264 http://deb.debian.org/debian unstable/main i386 libboost-thread-dev i386 1.83.0.2+b2 [3632 B] Get: 265 http://deb.debian.org/debian unstable/main i386 libbrotli-dev i386 1.1.0-2+b4 [313 kB] Get: 266 http://deb.debian.org/debian unstable/main i386 libbz2-dev i386 1.0.8-6 [32.1 kB] Get: 267 http://deb.debian.org/debian unstable/main i386 libpng-dev i386 1.6.43-5 [369 kB] Get: 268 http://deb.debian.org/debian unstable/main i386 libfreetype-dev i386 2.13.3+dfsg-1 [640 kB] Get: 269 http://deb.debian.org/debian unstable/main i386 libpkgconf3 i386 1.8.1-3 [38.2 kB] Get: 270 http://deb.debian.org/debian unstable/main i386 pkgconf-bin i386 1.8.1-3 [30.3 kB] Get: 271 http://deb.debian.org/debian unstable/main i386 pkgconf i386 1.8.1-3 [26.1 kB] Get: 272 http://deb.debian.org/debian unstable/main i386 libfontconfig-dev i386 2.15.0-1.1 [428 kB] Get: 273 http://deb.debian.org/debian unstable/main i386 libffi-dev i386 3.4.6-1 [57.8 kB] Get: 274 http://deb.debian.org/debian unstable/main i386 libglib2.0-data all 2.82.0-1 [1282 kB] Get: 275 http://deb.debian.org/debian unstable/main i386 libglib2.0-bin i386 2.82.0-1 [128 kB] Get: 276 http://deb.debian.org/debian unstable/main i386 python3-packaging all 24.1-1 [45.8 kB] Get: 277 http://deb.debian.org/debian unstable/main i386 libglib2.0-dev-bin i386 2.82.0-1 [172 kB] Get: 278 http://deb.debian.org/debian unstable/main i386 libsepol-dev i386 3.7-1 [405 kB] Get: 279 http://deb.debian.org/debian unstable/main i386 libpcre2-16-0 i386 10.42-4+b1 [244 kB] Get: 280 http://deb.debian.org/debian unstable/main i386 libpcre2-32-0 i386 10.42-4+b1 [233 kB] Get: 281 http://deb.debian.org/debian unstable/main i386 libpcre2-posix3 i386 10.42-4+b1 [55.8 kB] Get: 282 http://deb.debian.org/debian unstable/main i386 libpcre2-dev i386 10.42-4+b1 [759 kB] Get: 283 http://deb.debian.org/debian unstable/main i386 libselinux1-dev i386 3.7-3 [168 kB] Get: 284 http://deb.debian.org/debian unstable/main i386 libmount-dev i386 2.40.2-8 [28.7 kB] Get: 285 http://deb.debian.org/debian unstable/main i386 libsysprof-capture-4-dev i386 46.0-2 [51.6 kB] Get: 286 http://deb.debian.org/debian unstable/main i386 libgirepository-2.0-0 i386 2.82.0-1 [142 kB] Get: 287 http://deb.debian.org/debian unstable/main i386 libglib2.0-dev i386 2.82.0-1 [1877 kB] Get: 288 http://deb.debian.org/debian unstable/main i386 libpixman-1-dev i386 0.42.2-1+b1 [581 kB] Get: 289 http://deb.debian.org/debian unstable/main i386 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 290 http://deb.debian.org/debian unstable/main i386 x11proto-dev all 2024.1-1 [603 kB] Get: 291 http://deb.debian.org/debian unstable/main i386 x11proto-core-dev all 2024.1-1 [3312 B] Get: 292 http://deb.debian.org/debian unstable/main i386 libice-dev i386 2:1.0.10-1+b1 [68.3 kB] Get: 293 http://deb.debian.org/debian unstable/main i386 libsm-dev i386 2:1.2.3-1+b1 [37.1 kB] Get: 294 http://deb.debian.org/debian unstable/main i386 libxau-dev i386 1:1.0.9-1+b1 [21.6 kB] Get: 295 http://deb.debian.org/debian unstable/main i386 libxdmcp-dev i386 1:1.1.2-3+b1 [41.5 kB] Get: 296 http://deb.debian.org/debian unstable/main i386 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 297 http://deb.debian.org/debian unstable/main i386 libxcb1-dev i386 1.17.0-2 [186 kB] Get: 298 http://deb.debian.org/debian unstable/main i386 libx11-dev i386 2:1.8.7-1+b1 [904 kB] Get: 299 http://deb.debian.org/debian unstable/main i386 libxcb-render0-dev i386 1.17.0-2 [119 kB] Get: 300 http://deb.debian.org/debian unstable/main i386 libxcb-shm0-dev i386 1.17.0-2 [108 kB] Get: 301 http://deb.debian.org/debian unstable/main i386 libxext-dev i386 2:1.3.4-1+b1 [110 kB] Get: 302 http://deb.debian.org/debian unstable/main i386 libxrender-dev i386 1:0.9.10-1.1+b1 [36.9 kB] Get: 303 http://deb.debian.org/debian unstable/main i386 libcairo2-dev i386 1.18.2-1 [43.0 kB] Get: 304 http://deb.debian.org/debian unstable/main i386 libsigc++-3.0-0 i386 3.6.0-2 [31.0 kB] Get: 305 http://deb.debian.org/debian unstable/main i386 libcairomm-1.16-1 i386 1.18.0-1+b1 [64.5 kB] Get: 306 http://deb.debian.org/debian unstable/main i386 libsigc++-3.0-dev i386 3.6.0-2 [51.2 kB] Get: 307 http://deb.debian.org/debian unstable/main i386 libcairomm-1.16-dev i386 1.18.0-1+b1 [64.4 kB] Get: 308 http://deb.debian.org/debian unstable/main i386 libccp4-data all 8.0.0-3 [62.5 kB] Get: 309 http://deb.debian.org/debian unstable/main i386 libccp4c0t64 i386 8.0.0-3 [95.5 kB] Get: 310 http://deb.debian.org/debian unstable/main i386 libmmdb2-0 i386 2.0.22-1+b1 [368 kB] Get: 311 http://deb.debian.org/debian unstable/main i386 libccp4f0t64 i386 8.0.0-3 [184 kB] Get: 312 http://deb.debian.org/debian unstable/main i386 libccp4-dev i386 8.0.0-3 [42.9 kB] Get: 313 http://deb.debian.org/debian unstable/main i386 sfftw2 i386 2.1.5-7 [192 kB] Get: 314 http://deb.debian.org/debian unstable/main i386 libclipper2 i386 2.1.20201109-2+b2 [1183 kB] Get: 315 http://deb.debian.org/debian unstable/main i386 libmmdb2-dev i386 2.0.22-1+b1 [92.9 kB] Get: 316 http://deb.debian.org/debian unstable/main i386 sfftw-dev i386 2.1.5-7 [230 kB] Get: 317 http://deb.debian.org/debian unstable/main i386 libclipper-dev i386 2.1.20201109-2+b2 [82.4 kB] Get: 318 http://deb.debian.org/debian unstable/main i386 libcoordgen3 i386 3.0.2-1+b1 [226 kB] Get: 319 http://deb.debian.org/debian unstable/main i386 libnghttp3-9 i386 1.4.0-1 [74.3 kB] Get: 320 http://deb.debian.org/debian unstable/main i386 libngtcp2-16 i386 1.6.0-1 [154 kB] Get: 321 http://deb.debian.org/debian unstable/main i386 libngtcp2-crypto-gnutls8 i386 1.6.0-1 [20.2 kB] Get: 322 http://deb.debian.org/debian unstable/main i386 libcurl3t64-gnutls i386 8.10.0-2 [400 kB] Get: 323 http://deb.debian.org/debian unstable/main i386 libevent-2.1-7t64 i386 2.1.12-stable-10 [194 kB] Get: 324 http://deb.debian.org/debian unstable/main i386 libunbound8 i386 1.20.0-1+b1 [618 kB] Get: 325 http://deb.debian.org/debian unstable/main i386 libgnutls-dane0t64 i386 3.8.6-2 [439 kB] Get: 326 http://deb.debian.org/debian unstable/main i386 libgnutls-openssl27t64 i386 3.8.6-2 [439 kB] Get: 327 http://deb.debian.org/debian unstable/main i386 libidn2-dev i386 2.3.7-2 [125 kB] Get: 328 http://deb.debian.org/debian unstable/main i386 libp11-kit-dev i386 0.25.5-2 [208 kB] Get: 329 http://deb.debian.org/debian unstable/main i386 libtasn1-6-dev i386 4.19.0-3+b2 [101 kB] Get: 330 http://deb.debian.org/debian unstable/main i386 libgmpxx4ldbl i386 2:6.3.0+dfsg-2+b1 [330 kB] Get: 331 http://deb.debian.org/debian unstable/main i386 libgmp-dev i386 2:6.3.0+dfsg-2+b1 [659 kB] Get: 332 http://deb.debian.org/debian unstable/main i386 nettle-dev i386 3.10-1 [1333 kB] Get: 333 http://deb.debian.org/debian unstable/main i386 libgnutls28-dev i386 3.8.6-2 [1444 kB] Get: 334 http://deb.debian.org/debian unstable/main i386 libnghttp2-dev i386 1.63.0-1 [123 kB] Get: 335 http://deb.debian.org/debian unstable/main i386 libnghttp3-dev i386 1.4.0-1 [99.2 kB] Get: 336 http://deb.debian.org/debian unstable/main i386 libngtcp2-crypto-gnutls-dev i386 1.6.0-1 [24.7 kB] Get: 337 http://deb.debian.org/debian unstable/main i386 libngtcp2-dev i386 1.6.0-1 [206 kB] Get: 338 http://deb.debian.org/debian unstable/main i386 libpsl-dev i386 0.21.2-1.1 [78.2 kB] Get: 339 http://deb.debian.org/debian unstable/main i386 librtmp-dev i386 2.4+20151223.gitfa8646d.1-2+b4 [72.1 kB] Get: 340 http://deb.debian.org/debian unstable/main i386 libssl-dev i386 3.3.2-1 [2790 kB] Get: 341 http://deb.debian.org/debian unstable/main i386 libssh2-1-dev i386 1.11.0-7 [368 kB] Get: 342 http://deb.debian.org/debian unstable/main i386 libzstd-dev i386 1.5.6+dfsg-1 [352 kB] Get: 343 http://deb.debian.org/debian unstable/main i386 libcurl4-gnutls-dev i386 8.10.0-2 [531 kB] Get: 344 http://deb.debian.org/debian unstable/main i386 libdatrie-dev i386 0.2.13-3 [20.5 kB] Get: 345 http://deb.debian.org/debian unstable/main i386 libdeflate-dev i386 1.21-1 [57.1 kB] Get: 346 http://deb.debian.org/debian unstable/main i386 libdrm-common all 2.4.123-1 [8084 B] Get: 347 http://deb.debian.org/debian unstable/main i386 libdrm2 i386 2.4.123-1 [41.8 kB] Get: 348 http://deb.debian.org/debian unstable/main i386 libdrm-amdgpu1 i386 2.4.123-1 [25.0 kB] Get: 349 http://deb.debian.org/debian unstable/main i386 libpciaccess0 i386 0.17-3+b1 [53.8 kB] Get: 350 http://deb.debian.org/debian unstable/main i386 libdrm-intel1 i386 2.4.123-1 [66.8 kB] Get: 351 http://deb.debian.org/debian unstable/main i386 libdrm-radeon1 i386 2.4.123-1 [23.0 kB] Get: 352 http://deb.debian.org/debian unstable/main i386 libelf-dev i386 0.191-2 [83.1 kB] Get: 353 http://deb.debian.org/debian unstable/main i386 libdw1t64 i386 0.191-2 [276 kB] Get: 354 http://deb.debian.org/debian unstable/main i386 liblzma-dev i386 5.6.2-2 [312 kB] Get: 355 http://deb.debian.org/debian unstable/main i386 libdw-dev i386 0.191-2 [365 kB] Get: 356 http://deb.debian.org/debian unstable/main i386 libedit2 i386 3.1-20240808-1 [98.0 kB] Get: 357 http://deb.debian.org/debian unstable/main i386 libwayland-server0 i386 1.23.0-1 [35.5 kB] Get: 358 http://deb.debian.org/debian unstable/main i386 libxcb-randr0 i386 1.17.0-2 [118 kB] Get: 359 http://deb.debian.org/debian unstable/main i386 libglapi-mesa i386 24.2.2-1 [38.0 kB] Get: 360 http://deb.debian.org/debian unstable/main i386 libz3-4 i386 4.8.12-3.1+b2 [7989 kB] Get: 361 http://deb.debian.org/debian unstable/main i386 libllvm18 i386 1:18.1.8-11 [29.0 MB] Get: 362 http://deb.debian.org/debian unstable/main i386 libsensors-config all 1:3.6.0-10 [14.6 kB] Get: 363 http://deb.debian.org/debian unstable/main i386 libsensors5 i386 1:3.6.0-10 [35.5 kB] Get: 364 http://deb.debian.org/debian unstable/main i386 libxcb-dri3-0 i386 1.17.0-2 [107 kB] Get: 365 http://deb.debian.org/debian unstable/main i386 mesa-libgallium i386 24.2.2-1 [9268 kB] Get: 366 http://deb.debian.org/debian unstable/main i386 libgbm1 i386 24.2.2-1 [43.7 kB] Get: 367 http://deb.debian.org/debian unstable/main i386 libx11-xcb1 i386 2:1.8.7-1+b1 [232 kB] Get: 368 http://deb.debian.org/debian unstable/main i386 libxcb-dri2-0 i386 1.17.0-2 [107 kB] Get: 369 http://deb.debian.org/debian unstable/main i386 libxcb-present0 i386 1.17.0-2 [105 kB] Get: 370 http://deb.debian.org/debian unstable/main i386 libxcb-sync1 i386 1.17.0-2 [109 kB] Get: 371 http://deb.debian.org/debian unstable/main i386 libxcb-xfixes0 i386 1.17.0-2 [109 kB] Get: 372 http://deb.debian.org/debian unstable/main i386 libxshmfence1 i386 1.3-1+b1 [9028 B] Get: 373 http://deb.debian.org/debian unstable/main i386 libegl-mesa0 i386 24.2.2-1 [140 kB] Get: 374 http://deb.debian.org/debian unstable/main i386 libegl1 i386 1.7.0-1+b1 [36.2 kB] Get: 375 http://deb.debian.org/debian unstable/main i386 libxcb-glx0 i386 1.17.0-2 [123 kB] Get: 376 http://deb.debian.org/debian unstable/main i386 libxxf86vm1 i386 1:1.1.4-1+b2 [21.7 kB] Get: 377 http://deb.debian.org/debian unstable/main i386 libgl1-mesa-dri i386 24.2.2-1 [42.2 kB] Get: 378 http://deb.debian.org/debian unstable/main i386 libglx-mesa0 i386 24.2.2-1 [160 kB] Get: 379 http://deb.debian.org/debian unstable/main i386 libglx0 i386 1.7.0-1+b1 [38.0 kB] Get: 380 http://deb.debian.org/debian unstable/main i386 libgl1 i386 1.7.0-1+b1 [82.7 kB] Get: 381 http://deb.debian.org/debian unstable/main i386 libglx-dev i386 1.7.0-1+b1 [15.8 kB] Get: 382 http://deb.debian.org/debian unstable/main i386 libgl-dev i386 1.7.0-1+b1 [101 kB] Get: 383 http://deb.debian.org/debian unstable/main i386 libegl-dev i386 1.7.0-1+b1 [19.5 kB] Get: 384 http://deb.debian.org/debian unstable/main i386 libglvnd-core-dev i386 1.7.0-1+b1 [13.4 kB] Get: 385 http://deb.debian.org/debian unstable/main i386 libgles1 i386 1.7.0-1+b1 [12.0 kB] Get: 386 http://deb.debian.org/debian unstable/main i386 libgles-dev i386 1.7.0-1+b1 [50.8 kB] Get: 387 http://deb.debian.org/debian unstable/main i386 libopengl0 i386 1.7.0-1+b1 [29.5 kB] Get: 388 http://deb.debian.org/debian unstable/main i386 libopengl-dev i386 1.7.0-1+b1 [5368 B] Get: 389 http://deb.debian.org/debian unstable/main i386 libglvnd-dev i386 1.7.0-1+b1 [5140 B] Get: 390 http://deb.debian.org/debian unstable/main i386 libegl1-mesa-dev i386 24.2.2-1 [22.6 kB] Get: 391 http://deb.debian.org/debian unstable/main i386 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 392 http://deb.debian.org/debian unstable/main i386 libepoxy-dev i386 1.5.10-1+b2 [127 kB] Get: 393 http://deb.debian.org/debian unstable/main i386 libfribidi-dev i386 1.0.15-1 [113 kB] Get: 394 http://deb.debian.org/debian unstable/main i386 libgdk-pixbuf2.0-bin i386 2.42.12+dfsg-1 [18.5 kB] Get: 395 http://deb.debian.org/debian unstable/main i386 libjpeg62-turbo-dev i386 1:2.1.5-3 [303 kB] Get: 396 http://deb.debian.org/debian unstable/main i386 libjpeg-dev i386 1:2.1.5-3 [71.9 kB] Get: 397 http://deb.debian.org/debian unstable/main i386 libjbig-dev i386 2.1-6.1+b1 [31.0 kB] Get: 398 http://deb.debian.org/debian unstable/main i386 libwebpdecoder3 i386 1.4.0-0.1 [209 kB] Get: 399 http://deb.debian.org/debian unstable/main i386 libsharpyuv-dev i386 1.4.0-0.1 [117 kB] Get: 400 http://deb.debian.org/debian unstable/main i386 libwebp-dev i386 1.4.0-0.1 [459 kB] Get: 401 http://deb.debian.org/debian unstable/main i386 libtiffxx6 i386 4.5.1+git230720-5 [150 kB] Get: 402 http://deb.debian.org/debian unstable/main i386 liblerc-dev i386 4.0.0+ds-4+b1 [189 kB] Get: 403 http://deb.debian.org/debian unstable/main i386 libtiff-dev i386 4.5.1+git230720-5 [487 kB] Get: 404 http://deb.debian.org/debian unstable/main i386 libgdk-pixbuf-2.0-dev i386 2.42.12+dfsg-1 [52.4 kB] Get: 405 http://deb.debian.org/debian unstable/main i386 libglibmm-2.68-1t64 i386 2.82.0-1 [705 kB] Get: 406 http://deb.debian.org/debian unstable/main i386 libglibmm-2.68-dev i386 2.82.0-1 [464 kB] Get: 407 http://deb.debian.org/debian unstable/main i386 libglm-dev all 0.9.9.8+ds-7 [183 kB] Get: 408 http://deb.debian.org/debian unstable/main i386 libgraphene-1.0-dev i386 1.10.8-4 [61.4 kB] Get: 409 http://deb.debian.org/debian unstable/main i386 libgraphite2-dev i386 1.3.14-2 [20.0 kB] Get: 410 http://deb.debian.org/debian unstable/main i386 libgslcblas0 i386 2.8+dfsg-3 [106 kB] Get: 411 http://deb.debian.org/debian unstable/main i386 libgsl28 i386 2.8+dfsg-3 [978 kB] Get: 412 http://deb.debian.org/debian unstable/main i386 libgsl-dev i386 2.8+dfsg-3 [1240 kB] Get: 413 http://deb.debian.org/debian unstable/main i386 libharfbuzz-icu0 i386 9.0.0-1 [15.2 kB] Get: 414 http://deb.debian.org/debian unstable/main i386 libharfbuzz-subset0 i386 9.0.0-1 [583 kB] Get: 415 http://deb.debian.org/debian unstable/main i386 libharfbuzz-cairo0 i386 9.0.0-1 [47.4 kB] Get: 416 http://deb.debian.org/debian unstable/main i386 libharfbuzz-dev i386 9.0.0-1 [144 kB] Get: 417 http://deb.debian.org/debian unstable/main i386 libthai-dev i386 0.1.29-2 [26.4 kB] Get: 418 http://deb.debian.org/debian unstable/main i386 libxft-dev i386 2.3.6-1+b1 [74.9 kB] Get: 419 http://deb.debian.org/debian unstable/main i386 pango1.0-tools i386 1.54.0+ds-2 [43.1 kB] Get: 420 http://deb.debian.org/debian unstable/main i386 libpango1.0-dev i386 1.54.0+ds-2 [154 kB] Get: 421 http://deb.debian.org/debian unstable/main i386 libwayland-cursor0 i386 1.23.0-1 [12.0 kB] Get: 422 http://deb.debian.org/debian unstable/main i386 libwayland-bin i386 1.23.0-1 [22.4 kB] Get: 423 http://deb.debian.org/debian unstable/main i386 libwayland-dev i386 1.23.0-1 [73.4 kB] Get: 424 http://deb.debian.org/debian unstable/main i386 libxcomposite1 i386 1:0.4.5-1+b1 [15.2 kB] Get: 425 http://deb.debian.org/debian unstable/main i386 libxfixes-dev i386 1:6.0.0-2+b1 [22.9 kB] Get: 426 http://deb.debian.org/debian unstable/main i386 libxcomposite-dev i386 1:0.4.5-1+b1 [18.7 kB] Get: 427 http://deb.debian.org/debian unstable/main i386 libxcursor-dev i386 1:1.2.2-1 [50.2 kB] Get: 428 http://deb.debian.org/debian unstable/main i386 libxdamage-dev i386 1:1.1.6-1+b1 [15.5 kB] Get: 429 http://deb.debian.org/debian unstable/main i386 libxi-dev i386 2:1.8.1-1 [244 kB] Get: 430 http://deb.debian.org/debian unstable/main i386 libxinerama-dev i386 2:1.1.4-3+b1 [18.6 kB] Get: 431 http://deb.debian.org/debian unstable/main i386 libxkbcommon-dev i386 1.6.0-1+b1 [53.0 kB] Get: 432 http://deb.debian.org/debian unstable/main i386 libxrandr-dev i386 2:1.5.4-1 [45.8 kB] Get: 433 http://deb.debian.org/debian unstable/main i386 libvulkan-dev i386 1.3.290.0-1 [1358 kB] Get: 434 http://deb.debian.org/debian unstable/main i386 wayland-protocols all 1.37-1 [89.3 kB] Get: 435 http://deb.debian.org/debian unstable/main i386 libgtk-4-dev i386 4.14.4+ds-8 [981 kB] Get: 436 http://deb.debian.org/debian unstable/main i386 libpangomm-2.48-1t64 i386 2.54.0-1 [89.1 kB] Get: 437 http://deb.debian.org/debian unstable/main i386 libgtkmm-4.0-0 i386 4.10.0-4+b2 [1025 kB] Get: 438 http://deb.debian.org/debian unstable/main i386 libpangomm-2.48-dev i386 2.54.0-1 [72.6 kB] Get: 439 http://deb.debian.org/debian unstable/main i386 libgtkmm-4.0-dev i386 4.10.0-4+b2 [513 kB] Get: 440 http://deb.debian.org/debian unstable/main i386 libinchi1.07 i386 1.07.1+dfsg-3 [555 kB] Get: 441 http://deb.debian.org/debian unstable/main i386 liblapack3 i386 3.12.0-3 [2167 kB] Get: 442 http://deb.debian.org/debian unstable/main i386 libmaeparser1 i386 1.3.1-1+b1 [99.9 kB] Get: 443 http://deb.debian.org/debian unstable/main i386 libogg0 i386 1.3.5-3+b1 [24.5 kB] Get: 444 http://deb.debian.org/debian unstable/main i386 libogg-dev i386 1.3.5-3+b1 [201 kB] Get: 445 http://deb.debian.org/debian unstable/main i386 librdkit1t64 i386 202309.3-5 [5206 kB] Get: 446 http://deb.debian.org/debian unstable/main i386 librdkit-dev i386 202309.3-5 [416 kB] Get: 447 http://deb.debian.org/debian unstable/main i386 libsqlite3-dev i386 3.46.1-1 [1193 kB] Get: 448 http://deb.debian.org/debian unstable/main i386 libssm2 i386 1.4.0-2+b2 [87.9 kB] Get: 449 http://deb.debian.org/debian unstable/main i386 libssm-dev i386 1.4.0-2+b2 [15.2 kB] Get: 450 http://deb.debian.org/debian unstable/main i386 libvorbis0a i386 1.3.7-2 [88.3 kB] Get: 451 http://deb.debian.org/debian unstable/main i386 libvorbisenc2 i386 1.3.7-2 [69.5 kB] Get: 452 http://deb.debian.org/debian unstable/main i386 libvorbisfile3 i386 1.3.7-2 [23.7 kB] Get: 453 http://deb.debian.org/debian unstable/main i386 libvorbis-dev i386 1.3.7-2 [327 kB] Get: 454 http://deb.debian.org/debian unstable/main i386 robin-map-dev all 1.3.0-1 [29.8 kB] Get: 455 http://deb.debian.org/debian unstable/main i386 nanobind-dev all 2.1.0-1 [149 kB] Get: 456 http://deb.debian.org/debian unstable/main i386 python3-gi i386 3.48.2-1+b1 [237 kB] Get: 457 http://deb.debian.org/debian unstable/main i386 python-gi-dev i386 3.48.2-1+b1 [13.4 kB] Get: 458 http://deb.debian.org/debian unstable/main i386 python3-certifi all 2024.8.30-1 [159 kB] Get: 459 http://deb.debian.org/debian unstable/main i386 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 460 http://deb.debian.org/debian unstable/main i386 python3-charset-normalizer i386 3.3.2-2 [118 kB] Get: 461 http://deb.debian.org/debian unstable/main i386 python3-idna all 3.6-2.1 [38.6 kB] Get: 462 http://deb.debian.org/debian unstable/main i386 python3-numpy i386 1:1.26.4+ds-11 [4299 kB] Get: 463 http://deb.debian.org/debian unstable/main i386 rdkit-data all 202309.3-5 [13.1 MB] Get: 464 http://deb.debian.org/debian unstable/main i386 python3-rdkit i386 202309.3-5 [4414 kB] Get: 465 http://deb.debian.org/debian unstable/main i386 python3-urllib3 all 2.0.7-2 [111 kB] Get: 466 http://deb.debian.org/debian unstable/main i386 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 467 http://deb.debian.org/debian unstable/main i386 sharutils i386 1:4.15.2-9 [262 kB] Get: 468 http://deb.debian.org/debian unstable/main i386 swig i386 4.2.1-1 [1499 kB] Fetched 268 MB in 5s (49.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libapparmor1:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19769 files and directories currently installed.) Preparing to unpack .../libapparmor1_3.1.7-1+b1_i386.deb ... Unpacking libapparmor1:i386 (3.1.7-1+b1) ... Selecting previously unselected package libsystemd-shared:i386. Preparing to unpack .../libsystemd-shared_256.6-1_i386.deb ... Unpacking libsystemd-shared:i386 (256.6-1) ... Selecting previously unselected package systemd. Preparing to unpack .../systemd_256.6-1_i386.deb ... Unpacking systemd (256.6-1) ... Setting up libapparmor1:i386 (3.1.7-1+b1) ... Setting up libsystemd-shared:i386 (256.6-1) ... Setting up systemd (256.6-1) ... Created symlink '/etc/systemd/system/getty.target.wants/getty@tty1.service' -> '/usr/lib/systemd/system/getty@.service'. Created symlink '/etc/systemd/system/multi-user.target.wants/remote-fs.target' -> '/usr/lib/systemd/system/remote-fs.target'. Created symlink '/etc/systemd/system/sysinit.target.wants/systemd-pstore.service' -> '/usr/lib/systemd/system/systemd-pstore.service'. Initializing machine ID from random generator. Creating group 'systemd-journal' with GID 999. Creating group 'systemd-network' with GID 998. Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998. /usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring. Selecting previously unselected package systemd-sysv. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20731 files and directories currently installed.) Preparing to unpack .../00-systemd-sysv_256.6-1_i386.deb ... Unpacking systemd-sysv (256.6-1) ... Selecting previously unselected package libdbus-1-3:i386. Preparing to unpack .../01-libdbus-1-3_1.14.10-4+b1_i386.deb ... Unpacking libdbus-1-3:i386 (1.14.10-4+b1) ... Selecting previously unselected package dbus-bin. Preparing to unpack .../02-dbus-bin_1.14.10-4+b1_i386.deb ... Unpacking dbus-bin (1.14.10-4+b1) ... Selecting previously unselected package dbus-session-bus-common. Preparing to unpack .../03-dbus-session-bus-common_1.14.10-4_all.deb ... Unpacking dbus-session-bus-common (1.14.10-4) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../04-libexpat1_2.6.3-1_i386.deb ... Unpacking libexpat1:i386 (2.6.3-1) ... Selecting previously unselected package dbus-daemon. Preparing to unpack .../05-dbus-daemon_1.14.10-4+b1_i386.deb ... Unpacking dbus-daemon (1.14.10-4+b1) ... Selecting previously unselected package dbus-system-bus-common. Preparing to unpack .../06-dbus-system-bus-common_1.14.10-4_all.deb ... Unpacking dbus-system-bus-common (1.14.10-4) ... Selecting previously unselected package dbus. Preparing to unpack .../07-dbus_1.14.10-4+b1_i386.deb ... Unpacking dbus (1.14.10-4+b1) ... Selecting previously unselected package libfftw3-double3:i386. Preparing to unpack .../08-libfftw3-double3_3.3.10-1+b3_i386.deb ... Unpacking libfftw3-double3:i386 (3.3.10-1+b3) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../09-libbrotli1_1.1.0-2+b4_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b4) ... Selecting previously unselected package libpng16-16t64:i386. Preparing to unpack .../10-libpng16-16t64_1.6.43-5_i386.deb ... Unpacking libpng16-16t64:i386 (1.6.43-5) ... Selecting previously unselected package libfreetype6:i386. Preparing to unpack .../11-libfreetype6_2.13.3+dfsg-1_i386.deb ... Unpacking libfreetype6:i386 (2.13.3+dfsg-1) ... Selecting previously unselected package fonts-freefont-ttf. Preparing to unpack .../12-fonts-freefont-ttf_20211204+svn4273-2_all.deb ... Unpacking fonts-freefont-ttf (20211204+svn4273-2) ... Selecting previously unselected package libfontenc1:i386. Preparing to unpack .../13-libfontenc1_1%3a1.1.8-1_i386.deb ... Unpacking libfontenc1:i386 (1:1.1.8-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../14-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../15-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../16-xfonts-utils_1%3a7.7+6_i386.deb ... Unpacking xfonts-utils (1:7.7+6) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../17-fonts-urw-base35_20200910-8_all.deb ... Unpacking fonts-urw-base35 (20200910-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../18-fontconfig-config_2.15.0-1.1_i386.deb ... Unpacking fontconfig-config (2.15.0-1.1) ... Selecting previously unselected package libfontconfig1:i386. Preparing to unpack .../19-libfontconfig1_2.15.0-1.1_i386.deb ... Unpacking libfontconfig1:i386 (2.15.0-1.1) ... Selecting previously unselected package libsharpyuv0:i386. Preparing to unpack .../20-libsharpyuv0_1.4.0-0.1_i386.deb ... Unpacking libsharpyuv0:i386 (1.4.0-0.1) ... Selecting previously unselected package libdav1d7:i386. Preparing to unpack .../21-libdav1d7_1.4.3-1_i386.deb ... Unpacking libdav1d7:i386 (1.4.3-1) ... Selecting previously unselected package libheif-plugin-dav1d:i386. Preparing to unpack .../22-libheif-plugin-dav1d_1.18.1-2_i386.deb ... Unpacking libheif-plugin-dav1d:i386 (1.18.1-2) ... Selecting previously unselected package libde265-0:i386. Preparing to unpack .../23-libde265-0_1.0.15-1+b2_i386.deb ... Unpacking libde265-0:i386 (1.0.15-1+b2) ... Selecting previously unselected package libheif-plugin-libde265:i386. Preparing to unpack .../24-libheif-plugin-libde265_1.18.1-2_i386.deb ... Unpacking libheif-plugin-libde265:i386 (1.18.1-2) ... Selecting previously unselected package libheif1:i386. Preparing to unpack .../25-libheif1_1.18.1-2_i386.deb ... Unpacking libheif1:i386 (1.18.1-2) ... Selecting previously unselected package libjbig0:i386. Preparing to unpack .../26-libjbig0_2.1-6.1+b1_i386.deb ... Unpacking libjbig0:i386 (2.1-6.1+b1) ... Selecting previously unselected package libjpeg62-turbo:i386. Preparing to unpack .../27-libjpeg62-turbo_1%3a2.1.5-3_i386.deb ... Unpacking libjpeg62-turbo:i386 (1:2.1.5-3) ... Selecting previously unselected package liblcms2-2:i386. Preparing to unpack .../28-liblcms2-2_2.14-2+b1_i386.deb ... Unpacking liblcms2-2:i386 (2.14-2+b1) ... Selecting previously unselected package libglib2.0-0t64:i386. Preparing to unpack .../29-libglib2.0-0t64_2.82.0-1_i386.deb ... Unpacking libglib2.0-0t64:i386 (2.82.0-1) ... Selecting previously unselected package liblqr-1-0:i386. Preparing to unpack .../30-liblqr-1-0_0.4.2-2.1+b1_i386.deb ... Unpacking liblqr-1-0:i386 (0.4.2-2.1+b1) ... Selecting previously unselected package libltdl7:i386. Preparing to unpack .../31-libltdl7_2.4.7-7+b1_i386.deb ... Unpacking libltdl7:i386 (2.4.7-7+b1) ... Selecting previously unselected package libopenjp2-7:i386. Preparing to unpack .../32-libopenjp2-7_2.5.0-2+b3_i386.deb ... Unpacking libopenjp2-7:i386 (2.5.0-2+b3) ... Selecting previously unselected package libraw23t64:i386. Preparing to unpack .../33-libraw23t64_0.21.2-2.1_i386.deb ... Unpacking libraw23t64:i386 (0.21.2-2.1) ... Selecting previously unselected package libdeflate0:i386. Preparing to unpack .../34-libdeflate0_1.21-1_i386.deb ... Unpacking libdeflate0:i386 (1.21-1) ... Selecting previously unselected package liblerc4:i386. Preparing to unpack .../35-liblerc4_4.0.0+ds-4+b1_i386.deb ... Unpacking liblerc4:i386 (4.0.0+ds-4+b1) ... Selecting previously unselected package libwebp7:i386. Preparing to unpack .../36-libwebp7_1.4.0-0.1_i386.deb ... Unpacking libwebp7:i386 (1.4.0-0.1) ... Selecting previously unselected package libtiff6:i386. Preparing to unpack .../37-libtiff6_4.5.1+git230720-5_i386.deb ... Unpacking libtiff6:i386 (4.5.1+git230720-5) ... Selecting previously unselected package libwebpdemux2:i386. Preparing to unpack .../38-libwebpdemux2_1.4.0-0.1_i386.deb ... Unpacking libwebpdemux2:i386 (1.4.0-0.1) ... Selecting previously unselected package libwebpmux3:i386. Preparing to unpack .../39-libwebpmux3_1.4.0-0.1_i386.deb ... Unpacking libwebpmux3:i386 (1.4.0-0.1) ... Selecting previously unselected package libxau6:i386. Preparing to unpack .../40-libxau6_1%3a1.0.9-1+b1_i386.deb ... Unpacking libxau6:i386 (1:1.0.9-1+b1) ... Selecting previously unselected package libxdmcp6:i386. Preparing to unpack .../41-libxdmcp6_1%3a1.1.2-3+b1_i386.deb ... Unpacking libxdmcp6:i386 (1:1.1.2-3+b1) ... Selecting previously unselected package libxcb1:i386. Preparing to unpack .../42-libxcb1_1.17.0-2_i386.deb ... Unpacking libxcb1:i386 (1.17.0-2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../43-libx11-data_2%3a1.8.7-1_all.deb ... 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Unpacking python3-requests (2.32.3+dfsg-1) ... Selecting previously unselected package sharutils. Preparing to unpack .../391-sharutils_1%3a4.15.2-9_i386.deb ... Unpacking sharutils (1:4.15.2-9) ... Selecting previously unselected package swig. Preparing to unpack .../392-swig_4.2.1-1_i386.deb ... Unpacking swig (4.2.1-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libgraphite2-3:i386 (1.3.14-2) ... Setting up libboost-python1.83.0 (1.83.0-3.2) ... Setting up libgnutls-openssl27t64:i386 (3.8.6-2) ... Setting up liblcms2-2:i386 (2.14-2+b1) ... Setting up libglm-dev (0.9.9.8+ds-7) ... Setting up libpixman-1-0:i386 (0.42.2-1+b1) ... Setting up libsharpyuv0:i386 (1.4.0-0.1) ... Setting up libwayland-server0:i386 (1.23.0-1) ... Setting up libpciaccess0:i386 (0.17-3+b1) ... Setting up systemd-sysv (256.6-1) ... Setting up libxau6:i386 (1:1.0.9-1+b1) ... Setting up imagemagick-6-common (8:6.9.13.12+dfsg1-1) ... Setting up libxdmcp6:i386 (1:1.1.2-3+b1) ... Setting up libkeyutils1:i386 (1.6.3-3) ... Setting up libboost1.83-dev:i386 (1.83.0-3.2) ... Setting up libxcb1:i386 (1.17.0-2) ... Setting up swig (4.2.1-1) ... Setting up libpixman-1-dev:i386 (0.42.2-1+b1) ... Setting up libicu72:i386 (72.1-5) ... Setting up libxcb-xfixes0:i386 (1.17.0-2) ... Setting up libogg0:i386 (1.3.5-3+b1) ... Setting up libzstd-dev:i386 (1.5.6+dfsg-1) ... Setting up liblerc4:i386 (4.0.0+ds-4+b1) ... Setting up bsdextrautils (2.40.2-8) ... Setting up libglvnd-core-dev:i386 (1.7.0-1+b1) ... Setting up hicolor-icon-theme (0.18-1) ... Setting up libboost-date-time1.83.0:i386 (1.83.0-3.2) ... Setting up libdatrie1:i386 (0.2.13-3) ... Setting up libgslcblas0:i386 (2.8+dfsg-3) ... Setting up libmmdb2-0:i386 (2.0.22-1+b1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libxcb-render0:i386 (1.17.0-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglvnd0:i386 (1.7.0-1+b1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libijs-0.35:i386 (0.35-15.1+b1) ... Setting up libboost-regex1.83.0:i386 (1.83.0-3.2) ... Setting up libxcb-glx0:i386 (1.17.0-2) ... Setting up libdebhelper-perl (13.20) ... Setting up libgs-common (10.03.1~dfsg-2) ... Setting up libbrotli1:i386 (1.1.0-2+b4) ... Setting up libedit2:i386 (3.1-20240808-1) ... Setting up libboost-system1.83.0:i386 (1.83.0-3.2) ... Setting up libgdk-pixbuf2.0-common (2.42.12+dfsg-1) ... Setting up libuv1t64:i386 (1.48.0-6) ... Setting up libmagic1t64:i386 (1:5.45-3) ... Setting up x11-common (1:7.7+23.1) ... Running in chroot, ignoring request. Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libsensors-config (1:3.6.0-10) ... Setting up libpsl5t64:i386 (0.21.2-1.1) ... Setting up libnghttp2-14:i386 (1.63.0-1) ... Setting up libdeflate0:i386 (1.21-1) ... Setting up fonts-freefont-ttf (20211204+svn4273-2) ... Setting up libwebpdecoder3:i386 (1.4.0-0.1) ... Setting up libboost-thread1.83.0:i386 (1.83.0-3.2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libevent-2.1-7t64:i386 (2.1.12-stable-10) ... Setting up xkb-data (2.42-1) ... Setting up liblzo2-2:i386 (2.10-3) ... Setting up libxcb-shm0:i386 (1.17.0-2) ... Setting up libcom-err2:i386 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libccp4-data (8.0.0-3) ... Setting up libogg-dev:i386 (1.3.5-3+b1) ... Setting up rdkit-data (202309.3-5) ... Setting up libffi-dev:i386 (3.4.6-1) ... Setting up libjbig0:i386 (2.1-6.1+b1) ... Setting up libpcre2-16-0:i386 (10.42-4+b1) ... Setting up libopengl0:i386 (1.7.0-1+b1) ... Setting up libelf1t64:i386 (0.191-2) ... Setting up libpsl-dev:i386 (0.21.2-1.1) ... Setting up poppler-data (0.4.12-1) ... Setting up libkrb5support0:i386 (1.21.3-3) ... Setting up libdw1t64:i386 (0.191-2) ... Setting up libmaeparser1:i386 (1.3.1-1+b1) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-8) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Oct 17 06:00:31 UTC 2025. Universal Time is now: Fri Oct 17 06:00:31 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:i386 (1.83.0-3.2) ... Setting up libxcb-present0:i386 (1.17.0-2) ... Setting up libsysprof-capture-4-dev:i386 (46.0-2) ... Setting up libasound2-data (1.2.12-1) ... Setting up libboost-serialization1.83.0:i386 (1.83.0-3.2) ... Setting up xtrans-dev (1.4.0-1) ... Setting up libgraphite2-dev:i386 (1.3.14-2) ... Setting up libfontenc1:i386 (1:1.1.8-1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:i386 (4.8.12-3.1+b2) ... Setting up libpcre2-32-0:i386 (10.42-4+b1) ... Setting up libglib2.0-0t64:i386 (2.82.0-1) ... Setting up libblas3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libglib2.0-data (2.82.0-1) ... Setting up libunbound8:i386 (1.20.0-1+b1) ... Setting up libpkgconf3:i386 (1.8.1-3) ... Setting up libgmpxx4ldbl:i386 (2:6.3.0+dfsg-2+b1) ... Setting up libgles2:i386 (1.7.0-1+b1) ... Setting up libasound2t64:i386 (1.2.12-1) ... Setting up libexpat1-dev:i386 (2.6.3-1) ... Setting up libjpeg62-turbo:i386 (1:2.1.5-3) ... Setting up libgnutls-dane0t64:i386 (3.8.6-2) ... Setting up libsqlite3-dev:i386 (3.46.1-1) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjpeg62-turbo-dev:i386 (1:2.1.5-3) ... Setting up libepoxy0:i386 (1.5.10-1+b2) ... Setting up libboost-chrono1.83.0t64:i386 (1.83.0-3.2) ... Setting up libxcb-sync1:i386 (1.17.0-2) ... Setting up libjbig2dec0:i386 (0.20-1+b2) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up uuid-dev:i386 (2.40.2-8) ... Setting up libavahi-common-data:i386 (0.8-13+b2) ... Setting up libgles1:i386 (1.7.0-1+b1) ... Setting up libdbus-1-3:i386 (1.14.10-4+b1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:i386 (1.0.15-1) ... Setting up libproc2-0:i386 (2:4.0.4-5) ... Setting up libssl-dev:i386 (3.3.2-1) ... Setting up libpng16-16t64:i386 (1.6.43-5) ... Setting up libhwloc15:i386 (2.11.0-2) ... Setting up libvorbis0a:i386 (1.3.7-2) ... Setting up libidn12:i386 (1.42-2) ... Setting up libmmdb2-dev (2.0.22-1+b1) ... Setting up autopoint (0.22.5-2) ... Setting up libjsoncpp25:i386 (1.9.5-6+b2) ... Setting up icu-devtools (72.1-5) ... Setting up libsepol-dev:i386 (3.7-1) ... Setting up pkgconf-bin (1.8.1-3) ... Setting up gir1.2-glib-2.0:i386 (2.82.0-1) ... Setting up libsensors5:i386 (1:3.6.0-10) ... Setting up liblerc-dev:i386 (4.0.0+ds-4+b1) ... Setting up libk5crypto3:i386 (1.21.3-3) ... Setting up libltdl7:i386 (2.4.7-7+b1) ... Setting up libidn2-dev:i386 (2.3.7-2) ... Setting up libfftw3-double3:i386 (3.3.10-1+b3) ... Setting up libglapi-mesa:i386 (24.2.2-1) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-8) ... Setting up libgfortran5:i386 (14.2.0-4) ... Setting up libraw23t64:i386 (0.21.2-2.1) ... Setting up libvulkan1:i386 (1.3.290.0-1) ... Setting up libboost-atomic1.83-dev:i386 (1.83.0-3.2) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:i386 (1.4.0-1) ... Setting up libwebp7:i386 (1.4.0-0.1) ... Setting up libnghttp3-dev:i386 (1.4.0-1) ... Setting up liblzma-dev:i386 (5.6.2-2) ... Setting up libxcb-dri2-0:i386 (1.17.0-2) ... Setting up libsigc++-3.0-0:i386 (3.6.0-2) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1) ... Setting up robin-map-dev (1.3.0-1) ... Setting up libpcre2-posix3:i386 (10.42-4+b1) ... Setting up dwz (0.15-1+b1) ... Setting up wayland-protocols (1.37-1) ... Setting up libdav1d7:i386 (1.4.3-1) ... Setting up libmpich12:i386 (4.2.0-14) ... Setting up liblqr-1-0:i386 (0.4.2-2.1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up gir1.2-glib-2.0-dev:i386 (2.82.0-1) ... Setting up libxshmfence1:i386 (1.3-1+b1) ... Setting up librhash0:i386 (1.4.3-3+b1) ... Setting up libccp4c0t64:i386 (8.0.0-3) ... Setting up libtiff6:i386 (4.5.1+git230720-5) ... Setting up libxcb-randr0:i386 (1.17.0-2) ... Setting up dbus-session-bus-common (1.14.10-4) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-5) ... Setting up libopenjp2-7:i386 (2.5.0-2+b3) ... Setting up libx11-6:i386 (2:1.8.7-1+b1) ... Setting up libthai-data (0.1.29-2) ... Setting up libgirepository-1.0-1:i386 (1.80.1-4) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:i386 (1.6.0-1) ... Setting up cmake-data (3.30.3-1) ... Setting up libkrb5-3:i386 (1.21.3-3) ... Setting up libboost-dev:i386 (1.83.0.2+b2) ... Setting up libwayland-egl1:i386 (1.23.0-1) ... Setting up libboost-system1.83-dev:i386 (1.83.0-3.2) ... Setting up libssh2-1t64:i386 (1.11.0-7) ... Setting up libopengl-dev:i386 (1.7.0-1+b1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libcoordgen3:i386 (3.0.2-1+b1) ... Setting up gemmi (0.6.5+ds-2) ... Setting up sharutils (1:4.15.2-9) ... Setting up dbus-system-bus-common (1.14.10-4) ... useradd: Warning: missing or non-executable shell '/usr/sbin/nologin' Setting up libasound2-dev:i386 (1.2.12-1) ... Setting up libgsl28:i386 (2.8+dfsg-3) ... Setting up libde265-0:i386 (1.0.15-1+b2) ... Setting up libsharpyuv-dev:i386 (1.4.0-0.1) ... Setting up libtasn1-6-dev:i386 (4.19.0-3+b2) ... Setting up openssl (3.3.2-1) ... Setting up libwebpmux3:i386 (1.4.0-0.1) ... Setting up libtiffxx6:i386 (4.5.1+git230720-5) ... Setting up libinchi1.07 (1.07.1+dfsg-3) ... Setting up libdeflate-dev:i386 (1.21-1) ... Setting up libdrm-common (2.4.123-1) ... Setting up libxcomposite1:i386 (1:0.4.5-1+b1) ... Setting up readline-common (8.2-5) ... Setting up libicu-dev:i386 (72.1-5) ... Setting up libxml2:i386 (2.12.7+dfsg-3+b1) ... Setting up dbus-bin (1.14.10-4+b1) ... Setting up libbrotli-dev:i386 (1.1.0-2+b4) ... Setting up libngtcp2-crypto-gnutls8:i386 (1.6.0-1) ... Setting up libp11-kit-dev:i386 (0.25.5-2) ... Setting up libgraphene-1.0-0:i386 (1.10.8-4) ... Setting up libblas-dev:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up tao-pegtl-dev (3.2.7-1) ... Setting up libvorbisenc2:i386 (1.3.7-2) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libllvm18:i386 (1:18.1.8-11) ... Setting up libbz2-dev:i386 (1.0.8-6) ... Setting up libxkbcommon0:i386 (1.6.0-1+b1) ... Setting up libwayland-client0:i386 (1.23.0-1) ... Setting up gir1.2-graphene-1.0:i386 (1.10.8-4) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libxcb-dri3-0:i386 (1.17.0-2) ... Setting up libblkid-dev:i386 (2.40.2-8) ... Setting up libx11-xcb1:i386 (2:1.8.7-1+b1) ... Setting up libice6:i386 (2:1.0.10-1+b1) ... Setting up liblapack3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libgsl-dev (2.8+dfsg-3) ... Setting up libxdamage1:i386 (1:1.1.6-1+b1) ... Setting up libgmp-dev:i386 (2:6.3.0+dfsg-2+b1) ... Setting up libssm2:i386 (1.4.0-2+b2) ... Setting up libxau-dev:i386 (1:1.0.9-1+b1) ... Setting up libboost-chrono1.83-dev:i386 (1.83.0-3.2) ... Setting up libglibmm-2.68-1t64:i386 (2.82.0-1) ... Setting up libpcre2-dev:i386 (10.42-4+b1) ... Setting up nettle-dev:i386 (3.10-1) ... Setting up libxrender1:i386 (1:0.9.10-1.1+b1) ... Setting up libice-dev:i386 (2:1.0.10-1+b1) ... Setting up libtool (2.4.7-7) ... Setting up libgirepository-2.0-0:i386 (2.82.0-1) ... Setting up libselinux1-dev:i386 (3.7-3) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libfribidi-dev:i386 (1.0.15-1) ... Setting up libwebpdemux2:i386 (1.4.0-0.1) ... Setting up libxkbcommon-dev:i386 (1.6.0-1+b1) ... Setting up gemmi-dev (0.6.5+ds-2) ... Setting up libboost-system-dev:i386 (1.83.0.2+b2) ... Setting up libpng-dev:i386 (1.6.43-5) ... Setting up libavahi-common3:i386 (0.8-13+b2) ... Setting up libboost-serialization1.83-dev:i386 (1.83.0-3.2) ... Setting up libjpeg-dev:i386 (1:2.1.5-3) ... Setting up libjbig-dev:i386 (2.1-6.1+b1) ... Setting up libcloudproviders0:i386 (0.3.6-1) ... Setting up libxext6:i386 (2:1.3.4-1+b1) ... Setting up sfftw2 (2.1.5-7) ... Setting up libglib2.0-bin (2.82.0-1) ... Setting up libcpdb2t64:i386 (2.0~b5-1.2+b2) ... Setting up libngtcp2-crypto-gnutls-dev:i386 (1.6.0-1) ... Setting up dbus-daemon (1.14.10-4+b1) ... Setting up libcpdb-frontend2t64:i386 (2.0~b5-1.2+b2) ... Setting up libngtcp2-dev:i386 (1.6.0-1) ... Setting up libccp4f0t64:i386 (8.0.0-3) ... Setting up libldap-2.5-0:i386 (2.5.18+dfsg-3) ... Setting up pkgconf:i386 (1.8.1-3) ... Setting up libxxf86vm1:i386 (1:1.1.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libdconf1:i386 (0.40.0-4+b2) ... Setting up dh-autoreconf (20) ... Setting up libthai0:i386 (0.1.29-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libvorbisfile3:i386 (1.3.7-2) ... Setting up libsigc++-3.0-dev:i386 (3.6.0-2) ... Setting up libxdmcp-dev:i386 (1:1.1.2-3+b1) ... Setting up libwayland-bin (1.23.0-1) ... Setting up libwebp-dev:i386 (1.4.0-0.1) ... Setting up fftw2 (2.1.5-7) ... Setting up libfreetype6:i386 (2.13.3+dfsg-1) ... Setting up libtiff-dev:i386 (4.5.1+git230720-5) ... Setting up libxfixes3:i386 (1:6.0.0-2+b1) ... Setting up gir1.2-girepository-2.0:i386 (1.80.1-4) ... Setting up libboost-date-time1.83-dev:i386 (1.83.0-3.2) ... Setting up x11proto-core-dev (2024.1-1) ... Setting up dbus (1.14.10-4+b1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up shared-mime-info (2.4-5) ... Setting up libxinerama1:i386 (2:1.1.4-3+b1) ... Setting up sfftw-dev (2.1.5-7) ... Setting up libeigen3-dev (3.4.0-4) ... Setting up libgssapi-krb5-2:i386 (1.21.3-3) ... Setting up libxrandr2:i386 (2:1.5.4-1) ... Setting up libelf-dev:i386 (0.191-2) ... Setting up libboost-regex1.83-dev:i386 (1.83.0-3.2) ... Setting up ucf (3.0043+nmu1) ... Setting up libclipper2:i386 (2.1.20201109-2+b2) ... Setting up libssh2-1-dev:i386 (1.11.0-7) ... Setting up libjs-sphinxdoc (7.4.7-3) ... Setting up libreadline8t64:i386 (8.2-5) ... Setting up libssm-dev:i386 (1.4.0-2+b2) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libdrm2:i386 (2.4.123-1) ... Setting up libdatrie-dev:i386 (0.2.13-3) ... Setting up groff-base (1.23.0-5) ... Setting up libwayland-cursor0:i386 (1.23.0-1) ... Setting up libpam-systemd:i386 (256.6-1) ... Setting up libharfbuzz0b:i386 (9.0.0-1) ... Setting up libgdk-pixbuf-2.0-0:i386 (2.42.12+dfsg-1) ... Setting up libfontconfig1:i386 (2.15.0-1.1) ... Setting up fftw-dev (2.1.5-7) ... Setting up libsm6:i386 (2:1.2.3-1+b1) ... Setting up libarchive13t64:i386 (3.7.4-1) ... Setting up libavahi-client3:i386 (0.8-13+b2) ... Setting up libmount-dev:i386 (2.40.2-8) ... Setting up libdrm-amdgpu1:i386 (2.4.123-1) ... Setting up libboost-thread1.83-dev:i386 (1.83.0-3.2) ... Setting up libvorbis-dev:i386 (1.3.7-2) ... Setting up libgnutls28-dev:i386 (3.8.6-2) ... Setting up libpaper1:i386 (1.1.29+b1) ... Creating config file /etc/papersize with new version Setting up gtk-update-icon-cache (3.24.43-3) ... Setting up libnghttp2-dev:i386 (1.63.0-1) ... Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libxft2:i386 (2.3.6-1+b1) ... Setting up libharfbuzz-icu0:i386 (9.0.0-1) ... Setting up libxcb1-dev:i386 (1.17.0-2) ... Setting up libxi6:i386 (2:1.8.1-1) ... Setting up gir1.2-gdkpixbuf-2.0:i386 (2.42.12+dfsg-1) ... Setting up libcurl4t64:i386 (8.10.0-2) ... Setting up libtirpc3t64:i386 (1.3.4+ds-1.3) ... Setting up libccp4-dev:i386 (8.0.0-3) ... Setting up libsm-dev:i386 (2:1.2.3-1+b1) ... Setting up libdrm-radeon1:i386 (2.4.123-1) ... Setting up libboost-iostreams1.83-dev:i386 (1.83.0-3.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxcursor1:i386 (1:1.2.2-1) ... Setting up nanobind-dev (2.1.0-1) ... Setting up libpango-1.0-0:i386 (1.54.0+ds-2) ... Setting up libdrm-intel1:i386 (2.4.123-1) ... Setting up libx11-dev:i386 (2:1.8.7-1+b1) ... Setting up libcurl3t64-gnutls:i386 (8.10.0-2) ... Setting up bc (1.07.1-4) ... Setting up libharfbuzz-gobject0:i386 (9.0.0-1) ... Setting up libboost-iostreams-dev:i386 (1.83.0.2+b2) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink '/etc/systemd/system/timers.target.wants/man-db.timer' -> '/usr/lib/systemd/system/man-db.timer'. Setting up libwayland-dev:i386 (1.23.0-1) ... Setting up libdw-dev:i386 (0.191-2) ... Setting up libcairo2:i386 (1.18.2-1) ... Setting up libclipper-dev:i386 (2.1.20201109-2+b2) ... Setting up libfreetype-dev:i386 (2.13.3+dfsg-1) ... Setting up libcairomm-1.16-1:i386 (1.18.0-1+b1) ... Setting up libxfixes-dev:i386 (1:6.0.0-2+b1) ... Setting up libxcb-shm0-dev:i386 (1.17.0-2) ... Setting up dbus-user-session (1.14.10-4+b1) ... Setting up libharfbuzz-cairo0:i386 (9.0.0-1) ... Setting up adwaita-icon-theme (47~beta-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libxt6t64:i386 (1:1.2.1-1.2) ... Setting up librtmp-dev:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libxcb-render0-dev:i386 (1.17.0-2) ... Setting up libxext-dev:i386 (2:1.3.4-1+b1) ... Setting up libthai-dev:i386 (0.1.29-2) ... Setting up libgdk-pixbuf2.0-bin (2.42.12+dfsg-1) ... Setting up libnsl2:i386 (1.3.0-3+b2) ... Setting up libharfbuzz-subset0:i386 (9.0.0-1) ... Setting up cmake (3.30.3-1) ... Setting up libcairo-gobject2:i386 (1.18.2-1) ... Setting up libpangoft2-1.0-0:i386 (1.54.0+ds-2) ... Setting up libxi-dev:i386 (2:1.8.1-1) ... Setting up libxrender-dev:i386 (1:0.9.10-1.1+b1) ... Setting up libcups2t64:i386 (2.4.10-1) ... Setting up libboost-thread-dev:i386 (1.83.0.2+b2) ... Setting up libpangocairo-1.0-0:i386 (1.54.0+ds-2) ... Setting up libxdamage-dev:i386 (1:1.1.6-1+b1) ... Setting up libcairo-script-interpreter2:i386 (1.18.2-1) ... Setting up mesa-libgallium:i386 (24.2.2-1) ... Setting up gir1.2-freedesktop:i386 (1.80.1-4) ... Setting up libpython3.12-stdlib:i386 (3.12.6-1) ... Setting up libpangoxft-1.0-0:i386 (1.54.0+ds-2) ... Setting up libgbm1:i386 (24.2.2-1) ... Setting up libfontconfig-dev:i386 (2.15.0-1.1) ... Setting up libxcomposite-dev:i386 (1:0.4.5-1+b1) ... Setting up libxcursor-dev:i386 (1:1.2.2-1) ... Setting up python3.12 (3.12.6-1) ... Setting up libgl1-mesa-dri:i386 (24.2.2-1) ... Setting up pango1.0-tools (1.54.0+ds-2) ... Setting up debhelper (13.20) ... Setting up dconf-service (0.40.0-4+b2) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up libcurl4-gnutls-dev:i386 (8.10.0-2) ... Setting up gir1.2-harfbuzz-0.0:i386 (9.0.0-1) ... Setting up libpython3.12t64:i386 (3.12.6-1) ... Setting up gir1.2-pango-1.0:i386 (1.54.0+ds-2) ... Setting up libxrandr-dev:i386 (2:1.5.4-1) ... Setting up libegl-mesa0:i386 (24.2.2-1) ... Setting up gir1.2-freedesktop-dev:i386 (1.80.1-4) ... Setting up libxinerama-dev:i386 (2:1.1.4-3+b1) ... Setting up libegl1:i386 (1.7.0-1+b1) ... Setting up libpangomm-2.48-1t64:i386 (2.54.0-1) ... Setting up libpython3-stdlib:i386 (3.12.5-1) ... Setting up libxft-dev:i386 (2.3.6-1+b1) ... Setting up libgs10-common (10.03.1~dfsg-2) ... Setting up libglx-mesa0:i386 (24.2.2-1) ... Setting up libglx0:i386 (1.7.0-1+b1) ... Setting up dconf-gsettings-backend:i386 (0.40.0-4+b2) ... Setting up librdkit1t64 (202309.3-5) ... Setting up python3 (3.12.5-1) ... Setting up libpython3.12-dev:i386 (3.12.6-1) ... Setting up python3-zipp (3.20.1-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-packaging (24.1-1) ... Setting up libgl1:i386 (1.7.0-1+b1) ... Setting up python3-certifi (2024.8.30-1) ... Setting up python3-gi (3.48.2-1+b1) ... Setting up librdkit-dev (202309.3-5) ... Setting up python3-idna (3.6-2.1) ... Setting up python3.12-dev (3.12.6-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up libglx-dev:i386 (1.7.0-1+b1) ... Setting up libgtk-4-common (4.14.4+ds-8) ... Setting up libgl-dev:i386 (1.7.0-1+b1) ... Setting up libgs10:i386 (10.03.1~dfsg-2) ... Setting up python3-more-itertools (10.4.0-1) ... Setting up libglib2.0-dev-bin (2.82.0-1) ... Setting up libvulkan-dev:i386 (1.3.290.0-1) ... Setting up libpython3-dev:i386 (3.12.5-1) ... Setting up python3-jaraco.functools (4.0.2-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up libegl-dev:i386 (1.7.0-1+b1) ... Setting up python3-charset-normalizer (3.3.2-2) ... Setting up python3-typeguard (4.3.0-1) ... Setting up libepoxy-dev:i386 (1.5.10-1+b2) ... Setting up ghostscript (10.03.1~dfsg-2) ... Setting up python3-inflect (7.3.1-1) ... Setting up libglib2.0-dev:i386 (2.82.0-1) ... Setting up python3-dev (3.12.5-1) ... Setting up libboost-python1.83-dev (1.83.0-3.2) ... Setting up libgraphene-1.0-dev:i386 (1.10.8-4) ... Setting up libgtk-4-1:i386 (4.14.4+ds-8) ... Setting up libcairo2-dev:i386 (1.18.2-1) ... Setting up libglibmm-2.68-dev:i386 (2.82.0-1) ... Setting up libcairomm-1.16-dev:i386 (1.18.0-1+b1) ... Setting up libgles-dev:i386 (1.7.0-1+b1) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up gir1.2-gtk-4.0:i386 (4.14.4+ds-8) ... Setting up libgdk-pixbuf-2.0-dev:i386 (2.42.12+dfsg-1) ... Setting up python-gi-dev (3.48.2-1+b1) ... Setting up libharfbuzz-dev:i386 (9.0.0-1) ... Setting up python3-setuptools (74.1.2-2) ... Setting up libglvnd-dev:i386 (1.7.0-1+b1) ... Setting up libboost-python-dev (1.83.0.2+b2) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up libpango1.0-dev:i386 (1.54.0+ds-2) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up libgtkmm-4.0-0:i386 (4.10.0-4+b2) ... Setting up python3-numpy (1:1.26.4+ds-11) ... Setting up libpangomm-2.48-dev:i386 (2.54.0-1) ... Setting up libegl1-mesa-dev:i386 (24.2.2-1) ... Setting up dh-python (6.20240824) ... Setting up libgtk-4-dev:i386 (4.14.4+ds-8) ... Setting up python3-rdkit (202309.3-5) ... Setting up libgtkmm-4.0-dev:i386 (4.10.0-4+b2) ... Setting up libheif-plugin-dav1d:i386 (1.18.1-2) ... Setting up libheif-plugin-libde265:i386 (1.18.1-2) ... Setting up libheif1:i386 (1.18.1-2) ... Setting up libmagickcore-6.q16-7t64:i386 (8:6.9.13.12+dfsg1-1) ... Setting up libmagickwand-6.q16-7t64:i386 (8:6.9.13.12+dfsg1-1) ... Setting up imagemagick-6.q16 (8:6.9.13.12+dfsg1-1) ... update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode Setting up imagemagick (8:6.9.13.12+dfsg1-1) ... Processing triggers for libc-bin (2.40-2) ... Processing triggers for systemd (256.6-1) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/coot-1.1.09+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../coot_1.1.09+dfsg-2_source.changes dpkg-buildpackage: info: source package coot dpkg-buildpackage: info: source version 1.1.09+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_auto_clean --buildsystem cmake make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'macros'. libtoolize: copying file 'macros/libtool.m4' libtoolize: copying file 'macros/ltoptions.m4' libtoolize: copying file 'macros/ltsugar.m4' libtoolize: copying file 'macros/ltversion.m4' libtoolize: copying file 'macros/lt~obsolete.m4' configure.ac:41: installing './compile' configure.ac:31: installing './missing' MoleculesToTriangles/CXXClasses/Makefile.am: installing './depcomp' api/Makefile.am:113: installing './py-compile' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_auto_configure -- --with-enhanced-ligand-tools --disable-static --with-gemmi=/usr/lib/i386-linux-gnu --with-libdw --with-sound ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-enhanced-ligand-tools --disable-static --with-gemmi=/usr/lib/i386-linux-gnu --with-libdw --with-sound checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking how to print strings... printf checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking which libtool initialization strategy to adopt... AC-PROG-LIBTOOL checking what warning flags to pass to the C compiler... -Wall -Wunused checking what language compliance flags to pass to the C compiler... checking what warning flags to pass to the C++ compiler... -Wall -Wno-unused checking what language compliance flags to pass to the C++ compiler... checking for sys/stdtypes.h... no checking for OpenMP flag of C compiler... -fopenmp checking whether g++ supports C++11 features by default... yes checking for std::thread in thread... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for glib-2.0... yes checking if this is MINGW on Windows... no checking if this is msys2 windows 64... no checking for libpng >= 1.2... yes checking for cairo >= 1.14... yes checking for SQLite3... yes checking for libdw >= 0.20... yes checking for mmdb2... yes checking for ssm... yes checking for non-prefixed single-precision FFTW2 (fftw.h)... no yes checking for Clipper... yes checking for gsl... yes checking for cos in -lm... yes checking for cblas_dgemm in -lgslcblas... yes checking for gsl_blas_dgemm in -lgsl... yes checking for glm >= 0.9.9... yes checking for gtk4 >= 4.4... yes checking for epoxy >= 1.5... yes checking for a Python interpreter with version >= 3.7... python3 checking for python3... /usr/bin/python3 checking for python3 version... 3.12 checking for python3 platform... linux checking for python3 script directory... ${prefix}/lib/python3/dist-packages checking for python3 extension module directory... ${exec_prefix}/lib/python3/dist-packages checking for python3.12... (cached) /usr/bin/python3 checking for a version of Python >= '2.1.0'... yes checking for the sysconfig Python package... yes checking for Python include path... -I/usr/include/python3.12 checking for Python library path... -L/usr/lib/i386-linux-gnu -lpython3.12 checking for Python site-packages path... /usr/lib/python3.12/site-packages checking for Python platform specific site-packages path... /usr/lib/python3.12/site-packages checking python extra libraries... -ldl -lm checking python extra linking flags... -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions checking consistency of all components of python development environment... yes checking python3 module: requests... yes checking for pygobject-3.0 >= 3.36... yes checking for boostlib >= (102000)... yes checking whether the Boost::Thread library is available... yes checking for exit in -lboost_thread... yes checking whether the Boost::Python library is available... yes checking whether boost_python is the correct library... no checking whether boost_python312 is the correct library... yes checking for RDKit in /usr OK, good we found RDKit in /usr ENHANCED_LIGAND_TOOLS_CPPFLAGS -DMAKE_ENHANCED_LIGAND_TOOLS checking for GEMMI... yes checking build type... Linux-x86_64-debian-trixie-sid-gtk4 checking for sound... yes checking for vorbisfile >= 1.2... yes checking for alsa >= 1.2... yes Not using MySQL database checking for curl >= 7.9.7... 8.10.0 checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating macros/Makefile config.status: creating pdb-templates/Makefile config.status: creating scheme/Makefile config.status: creating python/Makefile config.status: creating compat/Makefile config.status: creating utils/Makefile config.status: creating coot-utils/Makefile config.status: creating protein_db/Makefile config.status: creating ccp4mg-utils/Makefile config.status: creating coords/Makefile config.status: creating db-main/Makefile config.status: creating density-contour/Makefile config.status: creating angles/Makefile config.status: creating mini-mol/Makefile config.status: creating skeleton/Makefile config.status: creating ligand/Makefile config.status: creating geometry/Makefile config.status: creating ideal/Makefile config.status: creating build/Makefile config.status: creating analysis/Makefile config.status: creating high-res/Makefile config.status: creating cootaneer/Makefile config.status: creating cootilus/Makefile config.status: creating greg-tests/Makefile config.status: creating python-tests/Makefile config.status: creating lidia-core/Makefile config.status: creating doc/Makefile config.status: creating validation-graphs/Makefile config.status: creating python/coot_load_modules.py config.status: creating data/Makefile config.status: creating data/rama-coeffs/Makefile config.status: creating data/metal/Makefile config.status: creating data/cho-models/Makefile config.status: creating data/cho-acedrg/Makefile config.status: creating glTF/Makefile config.status: creating pixmaps/Makefile config.status: creating pixmaps/icons/Makefile config.status: creating textures/Makefile config.status: creating sounds/Makefile config.status: creating rama-data/Makefile config.status: creating man/Makefile config.status: creating api/Makefile config.status: creating pli/Makefile config.status: creating pyrogen/Makefile config.status: creating pyrogen/pyrogen config.status: creating layla/Makefile config.status: creating MoleculesToTriangles/Makefile config.status: creating MoleculesToTriangles/CXXSurface/Makefile config.status: creating MoleculesToTriangles/CXXSurface/MoleculesToTrianglesCXXSurface.pc config.status: creating MoleculesToTriangles/CXXClasses/Makefile config.status: creating MoleculesToTriangles/CXXClasses/MoleculesToTrianglesCXXClasses.pc config.status: creating auxil/Makefile config.status: creating auxil/catcheck/Makefile config.status: creating auxil/rama/Makefile config.status: creating auxil/sec-str/Makefile config.status: creating auxil/strand-analysis/Makefile config.status: creating auxil/vectors/Makefile config.status: creating src/Makefile config.status: creating src/coot config.status: creating src/coot-relocatable-binaries config.status: creating ui/Makefile config.status: executing depfiles commands config.status: executing libtool commands dh_auto_configure --buildsystem cmake cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu .. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Looking for mmdb2/mmdb_defs.h - /usr/include -- Found CCP4: /usr/lib/i386-linux-gnu/libmmdb2.so -- Looking for ssm/ssm_vxedge.h - /usr/include -- Found CCP4: /usr/lib/i386-linux-gnu/libssm.so -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for clipper/clipper.h - /usr/include -- Found CCP4: /usr/lib/i386-linux-gnu/libclipper-core.so -- FFTW2 libraries - /usr/lib/libsfftw.so -- - /usr/lib/libsrfftw.so -- FFTW2 header directory - /usr/include -- Performing Test _LINKING_WITH_CLIPPER_CORE -- Performing Test _LINKING_WITH_CLIPPER_CORE - Success -- Looking for clipper/clipper-mmdb.h - /usr/include -- Found CCP4: /usr/lib/i386-linux-gnu/libclipper-mmdb.so -- Looking for clipper/clipper-ccp4.h - /usr/include -- Found CCP4: /usr/lib/i386-linux-gnu/libclipper-ccp4.so -- Looking for clipper/clipper-contrib.h - /usr/include -- Found CCP4: /usr/lib/i386-linux-gnu/libclipper-contrib.so -- Looking for clipper/clipper-minimol.h - /usr/include -- Found CCP4: /usr/lib/i386-linux-gnu/libclipper-minimol.so -- Looking for clipper/clipper-cif.h - /usr/include -- Found CCP4: /usr/lib/i386-linux-gnu/libclipper-cif.so -- CCP4 include directory: /usr/include -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/i386-linux-gnu/libblas.so -- Found GSL: /usr/include (found version "2.8") -- Found ZLIB: /usr/lib/i386-linux-gnu/libz.so (found version "1.3.1") -- Found PNG: /usr/lib/i386-linux-gnu/libpng.so (found version "1.6.43") -- Found gemmi version 0.6.5 -- Found Python: /usr/bin/python3 (found version "3.12.6") found components: Interpreter CMake Warning (dev) at CMakeLists.txt:27 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/i386-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: iostreams system python regex thread serialization -- Found Python: /usr/bin/python3 (found suitable version "3.12.6", minimum required is "3.10") found components: Interpreter Development.Module Development.SABIModule -- Note: MAKE_ENHANCED_LIGAND_TOOLS was not enabled -- Configuring done (2.4s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/coot-1.1.09+dfsg/obj-i686-linux-gnu make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_auto_build make -j22 make[1]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg' Making all in auxil make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' Making all in catcheck make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/catcheck' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/catcheck' Making all in rama make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/rama' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/rama' Making all in sec-str make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/sec-str' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/sec-str' Making all in strand-analysis make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/strand-analysis' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/strand-analysis' Making all in vectors make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/vectors' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil/vectors' make[3]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/auxil' Making all in scheme make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/scheme' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/scheme' Making all in python make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/python' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/python' Making all in pdb-templates make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/pdb-templates' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/pdb-templates' Making all in macros make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/macros' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/macros' Making all in compat make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/compat' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c -o getopt.lo getopt.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c -o getopt1.lo getopt1.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c getopt.cc -fPIC -DPIC -o .libs/getopt.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c getopt1.cc -fPIC -DPIC -o .libs/getopt1.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-compat.la -rpath /usr/lib/i386-linux-gnu getopt.lo getopt1.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/14/crtbeginS.o .libs/getopt.o .libs/getopt1.o -L/usr/lib/gcc/i686-linux-gnu/14 -L/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/14/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/14/crtendS.o /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-compat.so.0 -o .libs/libcoot-compat.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-compat.so.0" && ln -s "libcoot-compat.so.0.0.0" "libcoot-compat.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-compat.so" && ln -s "libcoot-compat.so.0.0.0" "libcoot-compat.so") libtool: link: ( cd ".libs" && rm -f "libcoot-compat.la" && ln -s "../libcoot-compat.la" "libcoot-compat.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/compat' Making all in utils make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/utils' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c -o coot-utils.lo coot-utils.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c -o coot-fasta.lo coot-fasta.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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-DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c coot-fasta.cc -fPIC -DPIC -o .libs/coot-fasta.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c align-utils.cc -fPIC -DPIC -o .libs/align-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c coot-utils.cc -fPIC -DPIC -o .libs/coot-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c setup-syminfo.cc -fPIC -DPIC -o .libs/setup-syminfo.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c hsv-rgb.cc -fPIC -DPIC -o .libs/hsv-rgb.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c win-compat.cc -fPIC -DPIC -o .libs/win-compat.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c gdk-keysyms.cc -fPIC -DPIC -o .libs/gdk-keysyms.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c pir-alignment.cc -fPIC -DPIC -o .libs/pir-alignment.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c dodec.cc -fPIC -DPIC -o .libs/dodec.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c logging.cc -fPIC -DPIC -o .libs/logging.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c threads.cc -fPIC -DPIC -o .libs/threads.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c base64-encode-decode.cc -fPIC -DPIC -o .libs/base64-encode-decode.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c colour-holder.cc -fPIC -DPIC -o .libs/colour-holder.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c radix.cc -fPIC -DPIC -o .libs/radix.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c insertion-sort.cc -fPIC -DPIC -o .libs/insertion-sort.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DBACKWARD_HAS_DW=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DCLIPPER_HAS_TOP8000 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c split-indices.cc -fPIC -DPIC -o .libs/split-indices.o coot-utils.cc: In function 'bool coot::file_exists_and_non_tiny(const std::string&, unsigned int)': coot-utils.cc:1254:26: warning: comparison of integer expressions of different signedness: '__off_t' {aka 'long int'} and 'unsigned int' [-Wsign-compare] 1254 | if (buf.st_size > tiny_size_max) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -DCLIPPER_HAS_TOP8000 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-utils.la -rpath /usr/lib/i386-linux-gnu coot-utils.lo coot-fasta.lo atomic-numbers.lo setup-syminfo.lo gdk-keysyms.lo hsv-rgb.lo dodec.lo win-compat.lo threads.lo align-utils.lo base64-encode-decode.lo pir-alignment.lo split-indices.lo radix.lo logging.lo insertion-sort.lo colour-holder.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -ldw -lelf libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/14/crtbeginS.o .libs/coot-utils.o .libs/coot-fasta.o .libs/atomic-numbers.o .libs/setup-syminfo.o .libs/gdk-keysyms.o .libs/hsv-rgb.o .libs/dodec.o .libs/win-compat.o .libs/threads.o .libs/align-utils.o .libs/base64-encode-decode.o .libs/pir-alignment.o .libs/split-indices.o .libs/radix.o .libs/logging.o .libs/insertion-sort.o .libs/colour-holder.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -ldw -lelf -L/usr/lib/gcc/i686-linux-gnu/14 -L/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/14/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/14/crtendS.o /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-utils.so.0 -o .libs/libcoot-utils.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-utils.so.0" && ln -s "libcoot-utils.so.0.0.0" "libcoot-utils.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-utils.so" && ln -s "libcoot-utils.so.0.0.0" "libcoot-utils.so") libtool: link: ( cd ".libs" && rm -f "libcoot-utils.la" && ln -s "../libcoot-utils.la" "libcoot-utils.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/utils' Making all in protein_db make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/protein_db' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c -o protein_db.lo protein_db.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c -o protein_db_utils.lo protein_db_utils.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c -o rna_db.lo rna_db.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c rna_db.cpp -fPIC -DPIC -o .libs/rna_db.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c protein_db.cpp -fPIC -DPIC -o .libs/protein_db.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c protein_db_utils.cpp -fPIC -DPIC -o .libs/protein_db_utils.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-protein-db.la -rpath /usr/lib/i386-linux-gnu protein_db.lo protein_db_utils.lo rna_db.lo -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/14/crtbeginS.o .libs/protein_db.o .libs/protein_db_utils.o .libs/rna_db.o -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/i686-linux-gnu/14 -L/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/14/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/14/crtendS.o /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-protein-db.so.0 -o .libs/libcoot-protein-db.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-protein-db.so.0" && ln -s "libcoot-protein-db.so.0.0.0" "libcoot-protein-db.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-protein-db.so" && ln -s "libcoot-protein-db.so.0.0.0" "libcoot-protein-db.so") libtool: link: ( cd ".libs" && rm -f "libcoot-protein-db.la" && ln -s "../libcoot-protein-db.la" "libcoot-protein-db.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/protein_db' Making all in mini-mol make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/mini-mol' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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-DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c -o atom-quads.lo atom-quads.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c mini-mol.cc -fPIC -DPIC -o .libs/mini-mol.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c mini-mol-utils.cc -fPIC -DPIC -o .libs/mini-mol-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c atom-quads.cc -fPIC -DPIC -o .libs/atom-quads.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-mini-mol.la -rpath /usr/lib/i386-linux-gnu mini-mol.lo mini-mol-utils.lo atom-quads.lo ../utils/libcoot-utils.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/14/crtbeginS.o .libs/mini-mol.o .libs/mini-mol-utils.o .libs/atom-quads.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs ../utils/.libs/libcoot-utils.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/i686-linux-gnu/14 -L/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/14/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/14/crtendS.o /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-mini-mol.so.0 -o .libs/libcoot-mini-mol.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-mini-mol.so.0" && ln -s "libcoot-mini-mol.so.0.0.0" "libcoot-mini-mol.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-mini-mol.so" && ln -s "libcoot-mini-mol.so.0.0.0" "libcoot-mini-mol.so") libtool: link: ( cd ".libs" && rm -f "libcoot-mini-mol.la" && ln -s "../libcoot-mini-mol.la" "libcoot-mini-mol.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/mini-mol' Making all in geometry make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/geometry' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 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-DPIC -o .libs/chem_mods.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c srs-interface.cc -fPIC -DPIC -o .libs/srs-interface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c read-sbase.cc -fPIC -DPIC -o .libs/read-sbase.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c protein-geometry.cc -fPIC -DPIC -o .libs/protein-geometry.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c mol-utils.cc -fPIC -DPIC -o .libs/mol-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c link.cc -fPIC -DPIC -o .libs/link.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c dreiding.cc -fPIC -DPIC -o .libs/dreiding.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c dictionary-residue.cc -fPIC -DPIC -o .libs/dictionary-residue.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c protein-donor-acceptors.cc -fPIC -DPIC -o .libs/protein-donor-acceptors.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c mol-utils-2.cc -fPIC -DPIC -o .libs/mol-utils-2.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c energy-lib.cc -fPIC -DPIC -o .libs/energy-lib.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c hydrophobic.cc -fPIC -DPIC -o .libs/hydrophobic.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c cif-parse.cc -fPIC -DPIC -o .libs/cif-parse.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c residue-and-atom-specs.cc -fPIC -DPIC -o .libs/residue-and-atom-specs.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c glyco-tools.cc -fPIC -DPIC -o .libs/glyco-tools.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c lbg-graph.cc -fPIC -DPIC -o .libs/lbg-graph.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c intercept-3GP.cc -fPIC -DPIC -o .libs/intercept-3GP.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c dict-utils.cc -fPIC -DPIC -o .libs/dict-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c cif-parse-link.cc -fPIC -DPIC -o .libs/cif-parse-link.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c cif-parse-mon-lib.cc -fPIC -DPIC -o .libs/cif-parse-mon-lib.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c main-chain.cc -fPIC -DPIC -o .libs/main-chain.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c -o read-metals-json.lo read-metals-json.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -Wdate-time -D_FORTIFY_SOURCE=2 -DXDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c read-metals-json.cc -fPIC -DPIC -o .libs/read-metals-json.o /bin/bash ../libtool --tag=CXX --mode=link g++ -DXDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-geometry.la -rpath /usr/lib/i386-linux-gnu cif-parse.lo protein-geometry.lo protein-geometry-mmdb.lo read-sbase.lo energy-lib.lo mol-utils.lo dictionary-residue.lo link.lo glyco-tools.lo dict-utils.lo chem_mods.lo srs-interface.lo protein-donor-acceptors.lo lbg-graph.lo dreiding.lo main-chain.lo residue-and-atom-specs.lo intercept-3GP.lo mol-utils-2.lo hydrophobic.lo cif-parse-link.lo cif-parse-mon-lib.lo read-metals-json.lo ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lmmdb2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/14/crtbeginS.o .libs/cif-parse.o .libs/protein-geometry.o .libs/protein-geometry-mmdb.o .libs/read-sbase.o .libs/energy-lib.o .libs/mol-utils.o .libs/dictionary-residue.o .libs/link.o .libs/glyco-tools.o .libs/dict-utils.o .libs/chem_mods.o .libs/srs-interface.o .libs/protein-donor-acceptors.o .libs/lbg-graph.o .libs/dreiding.o .libs/main-chain.o .libs/residue-and-atom-specs.o .libs/intercept-3GP.o .libs/mol-utils-2.o .libs/hydrophobic.o .libs/cif-parse-link.o .libs/cif-parse-mon-lib.o .libs/read-metals-json.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/compat/.libs ../mini-mol/.libs/libcoot-mini-mol.so ../utils/.libs/libcoot-utils.so ../compat/.libs/libcoot-compat.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib/gcc/i686-linux-gnu/14 -L/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/14/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/14/crtendS.o /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-geometry.so.0 -o .libs/libcoot-geometry.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-geometry.so.0" && ln -s "libcoot-geometry.so.0.0.0" "libcoot-geometry.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-geometry.so" && ln -s "libcoot-geometry.so.0.0.0" "libcoot-geometry.so") libtool: link: ( cd ".libs" && rm -f "libcoot-geometry.la" && ln -s "../libcoot-geometry.la" "libcoot-geometry.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/geometry' Making all in lidia-core make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/lidia-core' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" 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-DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c cod-atom-types.cc -fPIC -DPIC -o .libs/cod-atom-types.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c cod-types.cc -fPIC -DPIC -o .libs/cod-types.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c rdkit-interface.cc -fPIC -DPIC -o .libs/rdkit-interface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c atom-types.cc -fPIC -DPIC -o .libs/atom-types.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c bond-table-record-t.cc -fPIC -DPIC -o .libs/bond-table-record-t.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c get-residue.cc -fPIC -DPIC -o .libs/get-residue.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -pthread -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c svg-molecule.cc -fPIC -DPIC -o .libs/svg-molecule.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -Wl,-z,relro -o libcoot-lidia-core.la -rpath /usr/lib/i386-linux-gnu lbg-shared.lo lbg-molfile.lo lig-build.lo rdkit-interface.lo cod-types.lo atom-types.lo bond-record-container-t.lo cod-atom-type-t.lo cod-atom-types.lo bond-table-record-t.lo chemical-feature-clusters.lo get-residue.lo svg-molecule.lo ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/i386-linux-gnu -lsqlite3 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/14/crtbeginS.o .libs/lbg-shared.o .libs/lbg-molfile.o .libs/lig-build.o .libs/rdkit-interface.o .libs/cod-types.o .libs/atom-types.o .libs/bond-record-container-t.o .libs/cod-atom-type-t.o .libs/cod-atom-types.o .libs/bond-table-record-t.o .libs/chemical-feature-clusters.o .libs/get-residue.o .libs/svg-molecule.o -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/geometry/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/utils/.libs -Wl,-rpath -Wl,/build/reproducible-path/coot-1.1.09+dfsg/mini-mol/.libs ../geometry/.libs/libcoot-geometry.so ../utils/.libs/libcoot-utils.so ../mini-mol/.libs/libcoot-mini-mol.so -lclipper-fortran -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/usr/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/usr/lib/i386-linux-gnu -lsqlite3 -L/usr/lib/gcc/i686-linux-gnu/14 -L/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/14/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/14/crtendS.o /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libcoot-lidia-core.so.0 -o .libs/libcoot-lidia-core.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcoot-lidia-core.so.0" && ln -s "libcoot-lidia-core.so.0.0.0" "libcoot-lidia-core.so.0") libtool: link: (cd ".libs" && rm -f "libcoot-lidia-core.so" && ln -s "libcoot-lidia-core.so.0.0.0" "libcoot-lidia-core.so") libtool: link: ( cd ".libs" && rm -f "libcoot-lidia-core.la" && ln -s "../libcoot-lidia-core.la" "libcoot-lidia-core.la" ) make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/lidia-core' Making all in coot-utils make[2]: Entering directory '/build/reproducible-path/coot-1.1.09+dfsg/coot-utils' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/i386-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c -o mmrrcc.o mmrrcc.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 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-ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c mini-texture.cc -fPIC -DPIC -o .libs/mini-texture.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/i386-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c xmap-stats.cc -fPIC -DPIC -o .libs/xmap-stats.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/i386-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c texture-as-floats.cc -fPIC -DPIC -o .libs/texture-as-floats.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/i386-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c blob-line.cc -fPIC -DPIC -o .libs/blob-line.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/i386-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c coot-rama.cc -fPIC -DPIC -o .libs/coot-rama.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/i386-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c find-water-baddies.cc -fPIC -DPIC -o .libs/find-water-baddies.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/i386-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c exp-fit.cc -fPIC -DPIC -o .libs/exp-fit.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/i386-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c peak-search-from-list.cc -fPIC -DPIC -o .libs/peak-search-from-list.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/i386-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c slurp-map.cc -fPIC -DPIC -o .libs/slurp-map.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/i386-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c coot-coord-utils.cc -fPIC -DPIC -o .libs/coot-coord-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/i386-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c pepflip-using-difference-map.cc -fPIC -DPIC -o .libs/pepflip-using-difference-map.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/i386-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c positron.cc -fPIC -DPIC -o .libs/positron.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/i386-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 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-I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c bonded-atoms.cc -fPIC -DPIC -o .libs/bonded-atoms.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/i386-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c -o bricks.lo bricks.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/i386-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c bricks.cc -fPIC -DPIC -o .libs/bricks.o In file included from /usr/include/gemmi/model.hpp:18, from /usr/include/gemmi/chemcomp_xyz.hpp:12, from /usr/include/gemmi/mmread.hpp:8, from atom-selection-container.cc:38: /usr/include/gemmi/elem.hpp: In function 'double gemmi::molecular_weight(El)': /usr/include/gemmi/elem.hpp:100:50: error: static assertion failed: Hmm 100 | static_assert(weights[static_cast(El::D)] == 2.0141, "Hmm"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/gemmi/elem.hpp:100:50: note: the comparison reduces to '(2.01410000000000000142e+0l == 2.0140999999999999999e+0l)' /usr/include/gemmi/elem.hpp: In function 'float gemmi::covalent_radius(El)': /usr/include/gemmi/elem.hpp:141:48: error: static assertion failed: Hmm 141 | static_assert(radii[static_cast(El::D)] == 0.31f, "Hmm"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/include/gemmi/elem.hpp:141:48: note: the comparison reduces to '(3.10000002384185791016e-1l == 3.10000000000000000002e-1l)' /usr/include/gemmi/elem.hpp: In function 'float gemmi::vdw_radius(El)': /usr/include/gemmi/elem.hpp:186:48: error: static assertion failed: Hmm 186 | static_assert(radii[static_cast(El::D)] == 1.2f, "Hmm"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/include/gemmi/elem.hpp:186:48: note: the comparison reduces to '(1.20000004768371582031e+0l == 1.20000000000000000004e+0l)' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/i386-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c -o helix-like.lo helix-like.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 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-DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c -o contacts-by-bricks.lo contacts-by-bricks.cc /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" -DPACKAGE_STRING=\"coot\ 1.1.09\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 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-DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/i386-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" 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-Wno-unused -std=c++17 -c -o oct.lo oct.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/i386-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON 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-I/usr/lib/i386-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c -o prideout-octasphere.lo prideout-octasphere.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1.1.09\" "-DPACKAGE_STRING=\"coot 1.1.09\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"1.1.09\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1 -DHAVE_LIBM=1 -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBGSL=1 -DHAVE_PYTHON=\"3.12\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_THREAD=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I. -I.. -DMAKE_ENHANCED_LIGAND_TOOLS -DCLIPPER_HAS_TOP8000 -I/usr/lib/i386-linux-gnu/include -DUSE_GEMMI=1 -DMMDB_HAS_LINK_DISTANCE -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/rdkit -DRDKIT_HAS_CAIRO_SUPPORT -pthread -I/usr/include -DUSE_PYTHON -Wdate-time -D_FORTIFY_SOURCE=2 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -ffile-prefix-map=/build/reproducible-path/coot-1.1.09+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-unused -std=c++17 -c prideout-octasphere.cc -fPIC -DPIC -o .libs/prideout-octasphere.o make[2]: *** [Makefile:1410: atom-selection-container.lo] Error 1 make[2]: *** Waiting for unfinished jobs.... make[2]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg/coot-utils' make[1]: *** [Makefile:709: all-recursive] Error 1 make[1]: Leaving directory '/build/reproducible-path/coot-1.1.09+dfsg' dh_auto_build: error: make -j22 returned exit code 2 make: *** [debian/rules:81: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/8468 and its subdirectories