I: pbuilder: network access will be disabled during build
I: Current time: Sun Jun 15 21:30:53 +14 2025
I: pbuilder-time-stamp: 1749972653
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [autodock-vina_1.2.5-2.dsc]
I: copying [./autodock-vina_1.2.5.orig.tar.gz]
I: copying [./autodock-vina_1.2.5-2.debian.tar.xz]
I: Extracting source
gpgv: Signature made Mon Dec 18 14:07:04 2023 
gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv:                issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./autodock-vina_1.2.5-2.dsc: no acceptable signature found
dpkg-source: info: extracting autodock-vina in autodock-vina-1.2.5
dpkg-source: info: unpacking autodock-vina_1.2.5.orig.tar.gz
dpkg-source: info: unpacking autodock-vina_1.2.5-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying remove_static.patch
dpkg-source: info: applying do_not_link_against_unneeded_libs.patch
dpkg-source: info: applying annoying_static_removed_was_in_for_a_reason_questionmark.patch
dpkg-source: info: applying boost1.83.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/12492/tmp/hooks/D01_modify_environment starting
debug: Running on ionos6-i386.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Jun 15 07:31 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/12492/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/12492/tmp/hooks/D02_print_environment starting
I: set
  BASH=/bin/sh
  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
  BASH_ALIASES=()
  BASH_ARGC=()
  BASH_ARGV=()
  BASH_CMDS=()
  BASH_LINENO=([0]="12" [1]="0")
  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
  BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
  BASH_VERSION='5.2.21(1)-release'
  BUILDDIR=/build/reproducible-path
  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
  BUILDUSERNAME=pbuilder2
  BUILD_ARCH=i386
  DEBIAN_FRONTEND=noninteractive
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 '
  DIRSTACK=()
  DISTRIBUTION=unstable
  EUID=0
  FUNCNAME=([0]="Echo" [1]="main")
  GROUPS=()
  HOME=/root
  HOSTNAME=i-capture-the-hostname
  HOSTTYPE=i686
  HOST_ARCH=i386
  IFS=' 	
  '
  INVOCATION_ID=d7e52a079e2d40b1ba7991488e05cc89
  LANG=C
  LANGUAGE=de_CH:de
  LC_ALL=C
  LD_LIBRARY_PATH=/usr/lib/libeatmydata
  LD_PRELOAD=libeatmydata.so
  MACHTYPE=i686-pc-linux-gnu
  MAIL=/var/mail/root
  OPTERR=1
  OPTIND=1
  OSTYPE=linux-gnu
  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
  PBCURRENTCOMMANDLINEOPERATION=build
  PBUILDER_OPERATION=build
  PBUILDER_PKGDATADIR=/usr/share/pbuilder
  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
  PBUILDER_SYSCONFDIR=/etc
  PIPESTATUS=([0]="0")
  POSIXLY_CORRECT=y
  PPID=12492
  PS4='+ '
  PWD=/
  SHELL=/bin/bash
  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
  SHLVL=3
  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GQRenhJG/pbuilderrc_MXdw --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GQRenhJG/b2 --logfile b2/build.log autodock-vina_1.2.5-2.dsc'
  SUDO_GID=112
  SUDO_UID=107
  SUDO_USER=jenkins
  TERM=unknown
  TZ=/usr/share/zoneinfo/Etc/GMT-14
  UID=0
  USER=root
  _='I: set'
  http_proxy=http://213.165.73.152:3128
I: uname -a
  Linux i-capture-the-hostname 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Jun 13 14:06 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/12492/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), libboost-all-dev, debhelper
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19684 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on libboost-all-dev; however:
  Package libboost-all-dev is not installed.
 pbuilder-satisfydepends-dummy depends on debhelper; however:
  Package debhelper is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran-13{a} gfortran-13-i686-linux-gnu{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libboost-all-dev{a} libboost-atomic-dev{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-container-dev{a} libboost-container1.83-dev{a} libboost-container1.83.0{a} libboost-context-dev{a} libboost-context1.83-dev{a} libboost-context1.83.0{a} libboost-coroutine-dev{a} libboost-coroutine1.83-dev{a} libboost-coroutine1.83.0{a} libboost-date-time-dev{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-exception-dev{a} libboost-exception1.83-dev{a} libboost-fiber-dev{a} libboost-fiber1.83-dev{a} libboost-fiber1.83.0{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-graph-dev{a} libboost-graph-parallel-dev{a} libboost-graph-parallel1.83-dev{a} libboost-graph-parallel1.83.0{a} libboost-graph1.83-dev{a} libboost-graph1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-json-dev{a} libboost-json1.83-dev{a} libboost-json1.83.0{a} libboost-locale-dev{a} libboost-locale1.83-dev{a} libboost-locale1.83.0{a} libboost-log-dev{a} libboost-log1.83-dev{a} libboost-log1.83.0{a} libboost-math-dev{a} libboost-math1.83-dev{a} libboost-math1.83.0{a} libboost-mpi-dev{a} libboost-mpi-python-dev{a} libboost-mpi-python1.83-dev{a} libboost-mpi-python1.83.0{a} libboost-mpi1.83-dev{a} libboost-mpi1.83.0{a} libboost-nowide-dev{a} libboost-nowide1.83-dev{a} libboost-nowide1.83.0{a} libboost-numpy-dev{a} libboost-numpy1.83-dev{a} libboost-numpy1.83.0{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-python-dev{a} libboost-python1.83-dev{a} libboost-python1.83.0{a} libboost-random-dev{a} libboost-random1.83-dev{a} libboost-random1.83.0{a} libboost-regex-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization-dev{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-stacktrace-dev{a} libboost-stacktrace1.83-dev{a} libboost-stacktrace1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-test-dev{a} libboost-test1.83-dev{a} libboost-test1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost-timer-dev{a} libboost-timer1.83-dev{a} libboost-timer1.83.0{a} libboost-tools-dev{a} libboost-type-erasure-dev{a} libboost-type-erasure1.83-dev{a} libboost-type-erasure1.83.0{a} libboost-url-dev{a} libboost-url1.83-dev{a} libboost-url1.83.0{a} libboost-wave-dev{a} libboost-wave1.83-dev{a} libboost-wave1.83.0{a} libboost1.83-dev{a} libboost1.83-tools-dev{a} libbsd0{a} libcbor0.10{a} libcom-err2{a} libdebhelper-perl{a} libedit2{a} libelf1t64{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgfortran-13-dev{a} libgfortran5{a} libgssapi-krb5-2{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu72{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3t64{a} libpciaccess0{a} libpipeline1{a} libpsm-infinipath1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} librdmacm1t64{a} libreadline8t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} netbase{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} po-debconf{a} python3{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libcoarrays-openmpi-dev libmail-sendmail-perl lynx wget xauth 
0 packages upgraded, 213 newly installed, 0 to remove and 0 not upgraded.
Need to get 103 MB of archives. After unpacking 627 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main i386 libpython3.11-minimal i386 3.11.9-1 [817 kB]
Get: 2 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.2-1 [107 kB]
Get: 3 http://deb.debian.org/debian unstable/main i386 python3.11-minimal i386 3.11.9-1 [1918 kB]
Get: 4 http://deb.debian.org/debian unstable/main i386 python3-minimal i386 3.11.8-1 [26.3 kB]
Get: 5 http://deb.debian.org/debian unstable/main i386 media-types all 10.1.0 [26.9 kB]
Get: 6 http://deb.debian.org/debian unstable/main i386 netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian unstable/main i386 tzdata all 2024a-4 [255 kB]
Get: 8 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-4 [69.3 kB]
Get: 9 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-4 [171 kB]
Get: 10 http://deb.debian.org/debian unstable/main i386 libpython3.11-stdlib i386 3.11.9-1 [1795 kB]
Get: 11 http://deb.debian.org/debian unstable/main i386 python3.11 i386 3.11.9-1 [602 kB]
Get: 12 http://deb.debian.org/debian unstable/main i386 libpython3-stdlib i386 3.11.8-1 [9336 B]
Get: 13 http://deb.debian.org/debian unstable/main i386 python3 i386 3.11.8-1 [27.4 kB]
Get: 14 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.22 [22.4 kB]
Get: 15 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3 [314 kB]
Get: 16 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3 [114 kB]
Get: 17 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3 [42.9 kB]
Get: 18 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.21-14+b1 [162 kB]
Get: 19 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB]
Get: 20 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-4 [1194 kB]
Get: 21 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40-8 [97.2 kB]
Get: 22 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB]
Get: 23 http://deb.debian.org/debian unstable/main i386 man-db i386 2.12.1-1 [1421 kB]
Get: 24 http://deb.debian.org/debian unstable/main i386 libbsd0 i386 0.12.2-1 [134 kB]
Get: 25 http://deb.debian.org/debian unstable/main i386 libedit2 i386 3.1-20230828-1+b1 [97.8 kB]
Get: 26 http://deb.debian.org/debian unstable/main i386 libcbor0.10 i386 0.10.2-1.2 [30.8 kB]
Get: 27 http://deb.debian.org/debian unstable/main i386 libfido2-1 i386 1.14.0-1+b2 [87.4 kB]
Get: 28 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.20.1-6+b1 [36.1 kB]
Get: 29 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.1~rc2-1 [22.8 kB]
Get: 30 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.20.1-6+b1 [83.2 kB]
Get: 31 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-3 [9432 B]
Get: 32 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.20.1-6+b1 [360 kB]
Get: 33 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.20.1-6+b1 [145 kB]
Get: 34 http://deb.debian.org/debian unstable/main i386 openssh-client i386 1:9.7p1-4 [991 kB]
Get: 35 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB]
Get: 36 http://deb.debian.org/debian unstable/main i386 autoconf all 2.71-3 [332 kB]
Get: 37 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 38 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB]
Get: 39 http://deb.debian.org/debian unstable/main i386 autopoint all 0.21-14 [496 kB]
Get: 40 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.15.3 [88.0 kB]
Get: 41 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-7 [517 kB]
Get: 42 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 43 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 44 http://deb.debian.org/debian unstable/main i386 libsub-override-perl all 0.10-1 [10.6 kB]
Get: 45 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 46 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 47 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.191-1+b1 [194 kB]
Get: 48 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB]
Get: 49 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-4+b1 [9549 kB]
Get: 50 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.9.14+dfsg-1.3+b3 [727 kB]
Get: 51 http://deb.debian.org/debian unstable/main i386 gettext i386 0.21-14+b1 [1311 kB]
Get: 52 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 53 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 54 http://deb.debian.org/debian unstable/main i386 debhelper all 13.15.3 [901 kB]
Get: 55 http://deb.debian.org/debian unstable/main i386 libgfortran5 i386 14-20240429-1 [733 kB]
Get: 56 http://deb.debian.org/debian unstable/main i386 libgfortran-13-dev i386 13.2.0-24 [783 kB]
Get: 57 http://deb.debian.org/debian unstable/main i386 gfortran-13-i686-linux-gnu i386 13.2.0-24 [11.1 MB]
Get: 58 http://deb.debian.org/debian unstable/main i386 gfortran-13 i386 13.2.0-24 [12.2 kB]
Get: 59 http://deb.debian.org/debian unstable/main i386 libnl-3-200 i386 3.7.0-0.3 [61.8 kB]
Get: 60 http://deb.debian.org/debian unstable/main i386 libnl-route-3-200 i386 3.7.0-0.3 [193 kB]
Get: 61 http://deb.debian.org/debian unstable/main i386 libibverbs1 i386 50.0-2+b1 [66.7 kB]
Get: 62 http://deb.debian.org/debian unstable/main i386 ibverbs-providers i386 50.0-2+b1 [377 kB]
Get: 63 http://deb.debian.org/debian unstable/main i386 icu-devtools i386 72.1-4+b1 [216 kB]
Get: 64 http://deb.debian.org/debian unstable/main i386 libboost1.83-dev i386 1.83.0-2.1+b1 [10.6 MB]
Get: 65 http://deb.debian.org/debian unstable/main i386 libboost-atomic1.83.0 i386 1.83.0-2.1+b1 [234 kB]
Get: 66 http://deb.debian.org/debian unstable/main i386 libboost-atomic1.83-dev i386 1.83.0-2.1+b1 [235 kB]
Get: 67 http://deb.debian.org/debian unstable/main i386 libboost-atomic-dev i386 1.83.0.2+b2 [3912 B]
Get: 68 http://deb.debian.org/debian unstable/main i386 libboost-chrono1.83.0t64 i386 1.83.0-2.1+b1 [241 kB]
Get: 69 http://deb.debian.org/debian unstable/main i386 libboost-chrono1.83-dev i386 1.83.0-2.1+b1 [247 kB]
Get: 70 http://deb.debian.org/debian unstable/main i386 libboost-chrono-dev i386 1.83.0.2+b2 [4228 B]
Get: 71 http://deb.debian.org/debian unstable/main i386 libboost-container1.83.0 i386 1.83.0-2.1+b1 [261 kB]
Get: 72 http://deb.debian.org/debian unstable/main i386 libboost-container1.83-dev i386 1.83.0-2.1+b1 [267 kB]
Get: 73 http://deb.debian.org/debian unstable/main i386 libboost-container-dev i386 1.83.0.2+b2 [4080 B]
Get: 74 http://deb.debian.org/debian unstable/main i386 libboost-date-time1.83.0 i386 1.83.0-2.1+b1 [230 kB]
Get: 75 http://deb.debian.org/debian unstable/main i386 libboost-serialization1.83.0 i386 1.83.0-2.1+b1 [341 kB]
Get: 76 http://deb.debian.org/debian unstable/main i386 libboost-serialization1.83-dev i386 1.83.0-2.1+b1 [384 kB]
Get: 77 http://deb.debian.org/debian unstable/main i386 libboost-date-time1.83-dev i386 1.83.0-2.1+b1 [239 kB]
Get: 78 http://deb.debian.org/debian unstable/main i386 libboost-system1.83.0 i386 1.83.0-2.1+b1 [230 kB]
Get: 79 http://deb.debian.org/debian unstable/main i386 libboost-system1.83-dev i386 1.83.0-2.1+b1 [231 kB]
Get: 80 http://deb.debian.org/debian unstable/main i386 libboost-thread1.83.0 i386 1.83.0-2.1+b1 [270 kB]
Get: 81 http://deb.debian.org/debian unstable/main i386 libboost-thread1.83-dev i386 1.83.0-2.1+b1 [279 kB]
Get: 82 http://deb.debian.org/debian unstable/main i386 libboost-context1.83.0 i386 1.83.0-2.1+b1 [231 kB]
Get: 83 http://deb.debian.org/debian unstable/main i386 libboost-context1.83-dev i386 1.83.0-2.1+b1 [233 kB]
Get: 84 http://deb.debian.org/debian unstable/main i386 libboost-context-dev i386 1.83.0.2+b2 [3808 B]
Get: 85 http://deb.debian.org/debian unstable/main i386 libboost-coroutine1.83.0 i386 1.83.0-2.1+b1 [235 kB]
Get: 86 http://deb.debian.org/debian unstable/main i386 libboost-coroutine1.83-dev i386 1.83.0-2.1+b1 [237 kB]
Get: 87 http://deb.debian.org/debian unstable/main i386 libboost-coroutine-dev i386 1.83.0.2+b2 [3884 B]
Get: 88 http://deb.debian.org/debian unstable/main i386 libboost-date-time-dev i386 1.83.0.2+b2 [3596 B]
Get: 89 http://deb.debian.org/debian unstable/main i386 libboost-dev i386 1.83.0.2+b2 [3840 B]
Get: 90 http://deb.debian.org/debian unstable/main i386 libboost-exception1.83-dev i386 1.83.0-2.1+b1 [230 kB]
Get: 91 http://deb.debian.org/debian unstable/main i386 libboost-exception-dev i386 1.83.0.2+b2 [3596 B]
Get: 92 http://deb.debian.org/debian unstable/main i386 libboost-filesystem1.83.0 i386 1.83.0-2.1+b1 [287 kB]
Get: 93 http://deb.debian.org/debian unstable/main i386 libboost-filesystem1.83-dev i386 1.83.0-2.1+b1 [302 kB]
Get: 94 http://deb.debian.org/debian unstable/main i386 libboost-fiber1.83.0 i386 1.83.0-2.1+b1 [256 kB]
Get: 95 http://deb.debian.org/debian unstable/main i386 libboost-fiber1.83-dev i386 1.83.0-2.1+b1 [266 kB]
Get: 96 http://deb.debian.org/debian unstable/main i386 libboost-fiber-dev i386 1.83.0.2+b2 [4032 B]
Get: 97 http://deb.debian.org/debian unstable/main i386 libboost-filesystem-dev i386 1.83.0.2+b2 [3640 B]
Get: 98 http://deb.debian.org/debian unstable/main i386 libboost-graph1.83.0 i386 1.83.0-2.1+b1 [366 kB]
Get: 99 http://deb.debian.org/debian unstable/main i386 libboost-regex1.83.0 i386 1.83.0-2.1+b1 [328 kB]
Get: 100 http://deb.debian.org/debian unstable/main i386 libicu-dev i386 72.1-4+b1 [10.6 MB]
Get: 101 http://deb.debian.org/debian unstable/main i386 libboost-regex1.83-dev i386 1.83.0-2.1+b1 [347 kB]
Get: 102 http://deb.debian.org/debian unstable/main i386 libboost-test1.83.0 i386 1.83.0-2.1+b1 [479 kB]
Get: 103 http://deb.debian.org/debian unstable/main i386 libboost-test1.83-dev i386 1.83.0-2.1+b1 [554 kB]
Get: 104 http://deb.debian.org/debian unstable/main i386 libboost-graph1.83-dev i386 1.83.0-2.1+b1 [392 kB]
Get: 105 http://deb.debian.org/debian unstable/main i386 libboost-graph-dev i386 1.83.0.2+b2 [3708 B]
Get: 106 http://deb.debian.org/debian unstable/main i386 libevent-core-2.1-7t64 i386 2.1.12-stable-8.1+b3 [140 kB]
Get: 107 http://deb.debian.org/debian unstable/main i386 libevent-pthreads-2.1-7t64 i386 2.1.12-stable-8.1+b3 [54.3 kB]
Get: 108 http://deb.debian.org/debian unstable/main i386 libpsm-infinipath1 i386 3.3+20.604758e7-6.3 [177 kB]
Get: 109 http://deb.debian.org/debian unstable/main i386 librdmacm1t64 i386 50.0-2+b1 [76.0 kB]
Get: 110 http://deb.debian.org/debian unstable/main i386 libfabric1 i386 1.17.0-3+b1 [540 kB]
Get: 111 http://deb.debian.org/debian unstable/main i386 libhwloc15 i386 2.10.0-1+b1 [175 kB]
Get: 112 http://deb.debian.org/debian unstable/main i386 libpciaccess0 i386 0.17-3+b1 [53.8 kB]
Get: 113 http://deb.debian.org/debian unstable/main i386 libxau6 i386 1:1.0.9-1+b1 [18.5 kB]
Get: 114 http://deb.debian.org/debian unstable/main i386 libxdmcp6 i386 1:1.1.2-3+b1 [24.8 kB]
Get: 115 http://deb.debian.org/debian unstable/main i386 libxcb1 i386 1.17.0-1 [148 kB]
Get: 116 http://deb.debian.org/debian unstable/main i386 libx11-data all 2:1.8.7-1 [328 kB]
Get: 117 http://deb.debian.org/debian unstable/main i386 libx11-6 i386 2:1.8.7-1+b1 [822 kB]
Get: 118 http://deb.debian.org/debian unstable/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB]
Get: 119 http://deb.debian.org/debian unstable/main i386 libxnvctrl0 i386 535.171.04-1 [13.7 kB]
Get: 120 http://deb.debian.org/debian unstable/main i386 ocl-icd-libopencl1 i386 2.3.2-1+b1 [43.5 kB]
Get: 121 http://deb.debian.org/debian unstable/main i386 libhwloc-plugins i386 2.10.0-1+b1 [18.4 kB]
Get: 122 http://deb.debian.org/debian unstable/main i386 libopenmpi3t64 i386 4.1.6-13.3 [2626 kB]
Get: 123 http://deb.debian.org/debian unstable/main i386 libboost-mpi1.83.0 i386 1.83.0-2.1+b1 [274 kB]
Get: 124 http://deb.debian.org/debian unstable/main i386 libboost-graph-parallel1.83.0 i386 1.83.0-2.1+b1 [280 kB]
Get: 125 http://deb.debian.org/debian unstable/main i386 libboost-graph-parallel1.83-dev i386 1.83.0-2.1+b1 [284 kB]
Get: 126 http://deb.debian.org/debian unstable/main i386 libboost-graph-parallel-dev i386 1.83.0.2+b2 [3732 B]
Get: 127 http://deb.debian.org/debian unstable/main i386 libboost-iostreams1.83-dev i386 1.83.0-2.1+b1 [264 kB]
Get: 128 http://deb.debian.org/debian unstable/main i386 libboost-iostreams-dev i386 1.83.0.2+b2 [3588 B]
Get: 129 http://deb.debian.org/debian unstable/main i386 libboost-json1.83.0 i386 1.83.0-2.1+b1 [377 kB]
Get: 130 http://deb.debian.org/debian unstable/main i386 libboost-json1.83-dev i386 1.83.0-2.1+b1 [393 kB]
Get: 131 http://deb.debian.org/debian unstable/main i386 libboost-json-dev i386 1.83.0.2+b2 [3716 B]
Get: 132 http://deb.debian.org/debian unstable/main i386 libboost-locale1.83.0 i386 1.83.0-2.1+b1 [490 kB]
Get: 133 http://deb.debian.org/debian unstable/main i386 libboost-locale1.83-dev i386 1.83.0-2.1+b1 [586 kB]
Get: 134 http://deb.debian.org/debian unstable/main i386 libboost-locale-dev i386 1.83.0.2+b2 [3928 B]
Get: 135 http://deb.debian.org/debian unstable/main i386 libboost-log1.83.0 i386 1.83.0-2.1+b1 [732 kB]
Get: 136 http://deb.debian.org/debian unstable/main i386 libboost-log1.83-dev i386 1.83.0-2.1+b1 [916 kB]
Get: 137 http://deb.debian.org/debian unstable/main i386 libboost-log-dev i386 1.83.0.2+b2 [3800 B]
Get: 138 http://deb.debian.org/debian unstable/main i386 libboost-math1.83.0 i386 1.83.0-2.1+b1 [440 kB]
Get: 139 http://deb.debian.org/debian unstable/main i386 libboost-math1.83-dev i386 1.83.0-2.1+b1 [523 kB]
Get: 140 http://deb.debian.org/debian unstable/main i386 libboost-math-dev i386 1.83.0.2+b2 [3800 B]
Get: 141 http://deb.debian.org/debian unstable/main i386 openmpi-common all 4.1.6-13.3 [169 kB]
Get: 142 http://deb.debian.org/debian unstable/main i386 libnl-3-dev i386 3.7.0-0.3 [105 kB]
Get: 143 http://deb.debian.org/debian unstable/main i386 libnl-route-3-dev i386 3.7.0-0.3 [223 kB]
Get: 144 http://deb.debian.org/debian unstable/main i386 libibverbs-dev i386 50.0-2+b1 [693 kB]
Get: 145 http://deb.debian.org/debian unstable/main i386 libnuma1 i386 2.0.18-1 [23.5 kB]
Get: 146 http://deb.debian.org/debian unstable/main i386 libnuma-dev i386 2.0.18-1 [38.3 kB]
Get: 147 http://deb.debian.org/debian unstable/main i386 libltdl7 i386 2.4.7-7+b1 [395 kB]
Get: 148 http://deb.debian.org/debian unstable/main i386 libltdl-dev i386 2.4.7-7+b1 [167 kB]
Get: 149 http://deb.debian.org/debian unstable/main i386 libhwloc-dev i386 2.10.0-1+b1 [268 kB]
Get: 150 http://deb.debian.org/debian unstable/main i386 libevent-2.1-7t64 i386 2.1.12-stable-8.1+b3 [195 kB]
Get: 151 http://deb.debian.org/debian unstable/main i386 libevent-extra-2.1-7t64 i386 2.1.12-stable-8.1+b3 [113 kB]
Get: 152 http://deb.debian.org/debian unstable/main i386 libevent-openssl-2.1-7t64 i386 2.1.12-stable-8.1+b3 [61.9 kB]
Get: 153 http://deb.debian.org/debian unstable/main i386 libevent-dev i386 2.1.12-stable-8.1+b3 [325 kB]
Get: 154 http://deb.debian.org/debian unstable/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 155 http://deb.debian.org/debian unstable/main i386 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get: 156 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1 [915 kB]
Get: 157 http://deb.debian.org/debian unstable/main i386 openmpi-bin i386 4.1.6-13.3 [198 kB]
Get: 158 http://deb.debian.org/debian unstable/main i386 libopenmpi-dev i386 4.1.6-13.3 [1020 kB]
Get: 159 http://deb.debian.org/debian unstable/main i386 mpi-default-dev i386 1.15 [3152 B]
Get: 160 http://deb.debian.org/debian unstable/main i386 libboost-mpi1.83-dev i386 1.83.0-2.1+b1 [294 kB]
Get: 161 http://deb.debian.org/debian unstable/main i386 libboost-mpi-dev i386 1.83.0.2+b2 [3684 B]
Get: 162 http://deb.debian.org/debian unstable/main i386 libboost-python1.83.0 i386 1.83.0-2.1+b1 [358 kB]
Get: 163 http://deb.debian.org/debian unstable/main i386 mpi-default-bin i386 1.15 [2408 B]
Get: 164 http://deb.debian.org/debian unstable/main i386 libboost-mpi-python1.83.0 i386 1.83.0-2.1+b1 [432 kB]
Get: 165 http://deb.debian.org/debian unstable/main i386 libboost-mpi-python1.83-dev i386 1.83.0-2.1+b1 [239 kB]
Get: 166 http://deb.debian.org/debian unstable/main i386 libboost-mpi-python-dev i386 1.83.0.2+b2 [3720 B]
Get: 167 http://deb.debian.org/debian unstable/main i386 libboost-nowide1.83.0 i386 1.83.0-2.1+b1 [235 kB]
Get: 168 http://deb.debian.org/debian unstable/main i386 libboost-nowide1.83-dev i386 1.83.0-2.1+b1 [236 kB]
Get: 169 http://deb.debian.org/debian unstable/main i386 libboost-nowide-dev i386 1.83.0.2+b2 [3672 B]
Get: 170 http://deb.debian.org/debian unstable/main i386 libboost-numpy1.83.0 i386 1.83.0-2.1+b1 [249 kB]
Get: 171 http://deb.debian.org/debian unstable/main i386 libboost-numpy1.83-dev i386 1.83.0-2.1+b1 [255 kB]
Get: 172 http://deb.debian.org/debian unstable/main i386 libboost-numpy-dev i386 1.83.0.2+b2 [3648 B]
Get: 173 http://deb.debian.org/debian unstable/main i386 libboost-program-options1.83.0 i386 1.83.0-2.1+b1 [358 kB]
Get: 174 http://deb.debian.org/debian unstable/main i386 libboost-program-options1.83-dev i386 1.83.0-2.1+b1 [388 kB]
Get: 175 http://deb.debian.org/debian unstable/main i386 libboost-program-options-dev i386 1.83.0.2+b2 [3616 B]
Get: 176 http://deb.debian.org/debian unstable/main i386 libpython3.11t64 i386 3.11.9-1 [1982 kB]
Get: 177 http://deb.debian.org/debian unstable/main i386 libexpat1-dev i386 2.6.2-1 [165 kB]
Get: 178 http://deb.debian.org/debian unstable/main i386 libpython3.11-dev i386 3.11.9-1 [4632 kB]
Get: 179 http://deb.debian.org/debian unstable/main i386 libpython3-dev i386 3.11.8-1 [9600 B]
Get: 180 http://deb.debian.org/debian unstable/main i386 python3.11-dev i386 3.11.9-1 [501 kB]
Get: 181 http://deb.debian.org/debian unstable/main i386 python3-lib2to3 all 3.12.3-1 [77.6 kB]
Get: 182 http://deb.debian.org/debian unstable/main i386 python3-distutils all 3.12.3-1 [131 kB]
Get: 183 http://deb.debian.org/debian unstable/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get: 184 http://deb.debian.org/debian unstable/main i386 libjs-sphinxdoc all 7.2.6-7 [150 kB]
Get: 185 http://deb.debian.org/debian unstable/main i386 python3-dev i386 3.11.8-1 [26.1 kB]
Get: 186 http://deb.debian.org/debian unstable/main i386 libboost-python1.83-dev i386 1.83.0-2.1+b1 [392 kB]
Get: 187 http://deb.debian.org/debian unstable/main i386 libboost-python-dev i386 1.83.0.2+b2 [3900 B]
Get: 188 http://deb.debian.org/debian unstable/main i386 libboost-random1.83.0 i386 1.83.0-2.1+b1 [239 kB]
Get: 189 http://deb.debian.org/debian unstable/main i386 libboost-random1.83-dev i386 1.83.0-2.1+b1 [242 kB]
Get: 190 http://deb.debian.org/debian unstable/main i386 libboost-random-dev i386 1.83.0.2+b2 [3600 B]
Get: 191 http://deb.debian.org/debian unstable/main i386 libboost-regex-dev i386 1.83.0.2+b2 [3872 B]
Get: 192 http://deb.debian.org/debian unstable/main i386 libboost-serialization-dev i386 1.83.0.2+b2 [3832 B]
Get: 193 http://deb.debian.org/debian unstable/main i386 libboost-stacktrace1.83.0 i386 1.83.0-2.1+b1 [283 kB]
Get: 194 http://deb.debian.org/debian unstable/main i386 libboost-stacktrace1.83-dev i386 1.83.0-2.1+b1 [246 kB]
Get: 195 http://deb.debian.org/debian unstable/main i386 libboost-stacktrace-dev i386 1.83.0.2+b2 [3600 B]
Get: 196 http://deb.debian.org/debian unstable/main i386 libboost-system-dev i386 1.83.0.2+b2 [3740 B]
Get: 197 http://deb.debian.org/debian unstable/main i386 libboost-test-dev i386 1.83.0.2+b2 [3636 B]
Get: 198 http://deb.debian.org/debian unstable/main i386 libboost-thread-dev i386 1.83.0.2+b2 [3632 B]
Get: 199 http://deb.debian.org/debian unstable/main i386 libboost-timer1.83.0 i386 1.83.0-2.1+b1 [235 kB]
Get: 200 http://deb.debian.org/debian unstable/main i386 libboost-timer1.83-dev i386 1.83.0-2.1+b1 [237 kB]
Get: 201 http://deb.debian.org/debian unstable/main i386 libboost-timer-dev i386 1.83.0.2+b2 [3724 B]
Get: 202 http://deb.debian.org/debian unstable/main i386 libboost1.83-tools-dev i386 1.83.0-2.1+b1 [1574 kB]
Get: 203 http://deb.debian.org/debian unstable/main i386 libboost-tools-dev i386 1.83.0.2+b2 [3780 B]
Get: 204 http://deb.debian.org/debian unstable/main i386 libboost-type-erasure1.83.0 i386 1.83.0-2.1+b1 [246 kB]
Get: 205 http://deb.debian.org/debian unstable/main i386 libboost-type-erasure1.83-dev i386 1.83.0-2.1+b1 [250 kB]
Get: 206 http://deb.debian.org/debian unstable/main i386 libboost-type-erasure-dev i386 1.83.0.2+b2 [3696 B]
Get: 207 http://deb.debian.org/debian unstable/main i386 libboost-url1.83.0 i386 1.83.0-2.1+b1 [344 kB]
Get: 208 http://deb.debian.org/debian unstable/main i386 libboost-url1.83-dev i386 1.83.0-2.1+b1 [432 kB]
Get: 209 http://deb.debian.org/debian unstable/main i386 libboost-url-dev i386 1.83.0.2+b2 [3736 B]
Get: 210 http://deb.debian.org/debian unstable/main i386 libboost-wave1.83.0 i386 1.83.0-2.1+b1 [440 kB]
Get: 211 http://deb.debian.org/debian unstable/main i386 libboost-wave1.83-dev i386 1.83.0-2.1+b1 [500 kB]
Get: 212 http://deb.debian.org/debian unstable/main i386 libboost-wave-dev i386 1.83.0.2+b2 [3632 B]
Get: 213 http://deb.debian.org/debian unstable/main i386 libboost-all-dev i386 1.83.0.2+b2 [3944 B]
Fetched 103 MB in 3s (32.3 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
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Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
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Current default time zone: 'Etc/UTC'
Local time is now:      Sun Jun 15 07:31:24 UTC 2025.
Universal Time is now:  Sun Jun 15 07:31:24 UTC 2025.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

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I: Building the package
I: user script /srv/workspace/pbuilder/12492/tmp/hooks/A99_set_merged_usr starting
Not re-configuring usrmerge for unstable
I: user script /srv/workspace/pbuilder/12492/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/reproducible-path/autodock-vina-1.2.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../autodock-vina_1.2.5-2_source.changes
dpkg-buildpackage: info: source package autodock-vina
dpkg-buildpackage: info: source version 1.2.5-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
 debian/rules clean
dh  clean
   debian/rules override_dh_clean
make[1]: Entering directory '/build/reproducible-path/autodock-vina-1.2.5'
dh_clean
rm -f build/linux/release/*.o build/linux/release/vina*
make[1]: Leaving directory '/build/reproducible-path/autodock-vina-1.2.5'
 debian/rules binary
dh  binary
   dh_update_autotools_config
   dh_autoreconf
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make[1]: Entering directory '/build/reproducible-path/autodock-vina-1.2.5'
/usr/bin/make BASE=/usr -C build/linux/release CLFAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto" LDFLAGS="-Wl,-z,relro -Wl,-z,now --lto -g"
make[2]: Entering directory '/build/reproducible-path/autodock-vina-1.2.5/build/linux/release'
/bin/sh: line 1: git: command not found
g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -I ../../../src/lib -o main.o -c ../../../src/main/main.cpp 
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
In file included from /usr/include/boost/math/quaternion.hpp:14,
                 from ../../../src/lib/quaternion.h:26,
                 from ../../../src/lib/conf.h:28,
                 from ../../../src/lib/tree.h:26,
                 from ../../../src/lib/model.h:29,
                 from ../../../src/lib/parse_pdbqt.h:27,
                 from ../../../src/lib/vina.h:42,
                 from ../../../src/main/main.cpp:30:
/usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
   23 | #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
      |      ^~~~~~~
g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o ad4cache.o -c ../../../src/lib/ad4cache.cpp 
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
In file included from /usr/include/boost/math/quaternion.hpp:14,
                 from ../../../src/lib/quaternion.h:26,
                 from ../../../src/lib/conf.h:28,
                 from ../../../src/lib/tree.h:26,
                 from ../../../src/lib/model.h:29,
                 from ../../../src/lib/ad4cache.h:37,
                 from ../../../src/lib/ad4cache.cpp:23:
/usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
   23 | #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
      |      ^~~~~~~
g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o cache.o -c ../../../src/lib/cache.cpp 
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
In file included from /usr/include/boost/math/quaternion.hpp:14,
                 from ../../../src/lib/quaternion.h:26,
                 from ../../../src/lib/conf.h:28,
                 from ../../../src/lib/tree.h:26,
                 from ../../../src/lib/model.h:29,
                 from ../../../src/lib/cache.h:37,
                 from ../../../src/lib/cache.cpp:23:
/usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
   23 | #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
      |      ^~~~~~~
g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o non_cache.o -c ../../../src/lib/non_cache.cpp 
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
In file included from /usr/include/boost/math/quaternion.hpp:14,
                 from ../../../src/lib/quaternion.h:26,
                 from ../../../src/lib/conf.h:28,
                 from ../../../src/lib/tree.h:26,
                 from ../../../src/lib/model.h:29,
                 from ../../../src/lib/szv_grid.h:26,
                 from ../../../src/lib/non_cache.h:27,
                 from ../../../src/lib/non_cache.cpp:23:
/usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
   23 | #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
      |      ^~~~~~~
g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o conf_independent.o -c ../../../src/lib/conf_independent.cpp 
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
In file included from /usr/include/boost/math/quaternion.hpp:14,
                 from ../../../src/lib/quaternion.h:26,
                 from ../../../src/lib/conf.h:28,
                 from ../../../src/lib/tree.h:26,
                 from ../../../src/lib/model.h:29,
                 from ../../../src/lib/conf_independent.cpp:24:
/usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
   23 | #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
      |      ^~~~~~~
g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o coords.o -c ../../../src/lib/coords.cpp 
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
In file included from /usr/include/boost/math/quaternion.hpp:14,
                 from ../../../src/lib/quaternion.h:26,
                 from ../../../src/lib/conf.h:28,
                 from ../../../src/lib/coords.h:26,
                 from ../../../src/lib/coords.cpp:23:
/usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
   23 | #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
      |      ^~~~~~~
g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o grid.o -c ../../../src/lib/grid.cpp 
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o szv_grid.o -c ../../../src/lib/szv_grid.cpp 
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
In file included from /usr/include/boost/math/quaternion.hpp:14,
                 from ../../../src/lib/quaternion.h:26,
                 from ../../../src/lib/conf.h:28,
                 from ../../../src/lib/tree.h:26,
                 from ../../../src/lib/model.h:29,
                 from ../../../src/lib/szv_grid.h:26,
                 from ../../../src/lib/szv_grid.cpp:23:
/usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
   23 | #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
      |      ^~~~~~~
g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o model.o -c ../../../src/lib/model.cpp 
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
In file included from /usr/include/boost/math/quaternion.hpp:14,
                 from ../../../src/lib/quaternion.h:26,
                 from ../../../src/lib/conf.h:28,
                 from ../../../src/lib/tree.h:26,
                 from ../../../src/lib/model.h:29,
                 from ../../../src/lib/model.cpp:25:
/usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
   23 | #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
      |      ^~~~~~~
g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o monte_carlo.o -c ../../../src/lib/monte_carlo.cpp 
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
In file included from /usr/include/boost/math/quaternion.hpp:14,
                 from ../../../src/lib/quaternion.h:26,
                 from ../../../src/lib/conf.h:28,
                 from ../../../src/lib/tree.h:26,
                 from ../../../src/lib/model.h:29,
                 from ../../../src/lib/monte_carlo.h:27,
                 from ../../../src/lib/monte_carlo.cpp:23:
/usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
   23 | #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
      |      ^~~~~~~
g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o mutate.o -c ../../../src/lib/mutate.cpp 
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
In file included from /usr/include/boost/math/quaternion.hpp:14,
                 from ../../../src/lib/quaternion.h:26,
                 from ../../../src/lib/conf.h:28,
                 from ../../../src/lib/tree.h:26,
                 from ../../../src/lib/model.h:29,
                 from ../../../src/lib/mutate.h:26,
                 from ../../../src/lib/mutate.cpp:23:
/usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
   23 | #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
      |      ^~~~~~~
g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o parallel_mc.o -c ../../../src/lib/parallel_mc.cpp 
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
In file included from /usr/include/boost/math/quaternion.hpp:14,
                 from ../../../src/lib/quaternion.h:26,
                 from ../../../src/lib/conf.h:28,
                 from ../../../src/lib/tree.h:26,
                 from ../../../src/lib/model.h:29,
                 from ../../../src/lib/monte_carlo.h:27,
                 from ../../../src/lib/parallel_mc.h:26,
                 from ../../../src/lib/parallel_mc.cpp:24:
/usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
   23 | #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
      |      ^~~~~~~
g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o parse_pdbqt.o -c ../../../src/lib/parse_pdbqt.cpp 
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
In file included from /usr/include/boost/math/quaternion.hpp:14,
                 from ../../../src/lib/quaternion.h:26,
                 from ../../../src/lib/conf.h:28,
                 from ../../../src/lib/tree.h:26,
                 from ../../../src/lib/model.h:29,
                 from ../../../src/lib/parse_pdbqt.cpp:34:
/usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
   23 | #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
      |      ^~~~~~~
g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o quasi_newton.o -c ../../../src/lib/quasi_newton.cpp 
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
In file included from /usr/include/boost/math/quaternion.hpp:14,
                 from ../../../src/lib/quaternion.h:26,
                 from ../../../src/lib/conf.h:28,
                 from ../../../src/lib/tree.h:26,
                 from ../../../src/lib/model.h:29,
                 from ../../../src/lib/quasi_newton.h:26,
                 from ../../../src/lib/quasi_newton.cpp:23:
/usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
   23 | #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
      |      ^~~~~~~
g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o quaternion.o -c ../../../src/lib/quaternion.cpp 
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
In file included from /usr/include/boost/math/quaternion.hpp:14,
                 from ../../../src/lib/quaternion.h:26,
                 from ../../../src/lib/quaternion.cpp:23:
/usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
   23 | #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
      |      ^~~~~~~
g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o random.o -c ../../../src/lib/random.cpp 
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o utils.o -c ../../../src/lib/utils.cpp 
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o vina.o -c ../../../src/lib/vina.cpp 
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
In file included from /usr/include/boost/math/quaternion.hpp:14,
                 from ../../../src/lib/quaternion.h:26,
                 from ../../../src/lib/conf.h:28,
                 from ../../../src/lib/tree.h:26,
                 from ../../../src/lib/model.h:29,
                 from ../../../src/lib/parse_pdbqt.h:27,
                 from ../../../src/lib/vina.h:42,
                 from ../../../src/lib/vina.cpp:23:
/usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
   23 | #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
      |      ^~~~~~~
g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -Wl,-z,relro -Wl,-z,now --lto -g -o vina main.o ad4cache.o cache.o non_cache.o conf_independent.o coords.o grid.o szv_grid.o model.o monte_carlo.o mutate.o parallel_mc.o parse_pdbqt.o quasi_newton.o quaternion.o random.o utils.o vina.o -l boost_system -l boost_thread -l boost_filesystem -l boost_program_options
lto-wrapper: warning: using serial compilation of 9 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/autodock-vina-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -I ../../../src/lib -o split.o -c ../../../src/split/split.cpp 
cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++
g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -std=c++11 -DVERSION=\"v1.2.5\" -I /usr/include -Wl,-z,relro -Wl,-z,now --lto -g -o vina_split split.o -l boost_system -l boost_thread -l boost_filesystem -l boost_program_options
make[2]: Leaving directory '/build/reproducible-path/autodock-vina-1.2.5/build/linux/release'
make[1]: Leaving directory '/build/reproducible-path/autodock-vina-1.2.5'
   create-stamp debian/debhelper-build-stamp
   dh_prep
   dh_auto_install --destdir=debian/autodock-vina/
   dh_install
   dh_installdocs
   dh_installchangelogs
   dh_installman
   dh_perl
   dh_link
   dh_strip_nondeterminism
   dh_compress
   dh_fixperms
   dh_missing
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
   dh_installdeb
   dh_gencontrol
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'autodock-vina' in '../autodock-vina_1.2.5-2_i386.deb'.
dpkg-deb: building package 'autodock-vina-dbgsym' in '../autodock-vina-dbgsym_1.2.5-2_i386.deb'.
 dpkg-genbuildinfo --build=binary -O../autodock-vina_1.2.5-2_i386.buildinfo
 dpkg-genchanges --build=binary -O../autodock-vina_1.2.5-2_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/12492/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/12492/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/12492 and its subdirectories
I: Current time: Sun Jun 15 21:32:50 +14 2025
I: pbuilder-time-stamp: 1749972770