I: pbuilder: network access will be disabled during build I: Current time: Tue Jan 23 23:05:47 +14 2024 I: pbuilder-time-stamp: 1706000747 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-cran-ncdf4_1.22-1.dsc] I: copying [./r-cran-ncdf4_1.22.orig.tar.gz] I: copying [./r-cran-ncdf4_1.22-1.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Jan 9 07:01:31 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-cran-ncdf4_1.22-1.dsc: no acceptable signature found dpkg-source: info: extracting r-cran-ncdf4 in r-cran-ncdf4-1.22 dpkg-source: info: unpacking r-cran-ncdf4_1.22.orig.tar.gz dpkg-source: info: unpacking r-cran-ncdf4_1.22-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_no_rpath.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/12673/tmp/hooks/D01_modify_environment starting debug: Running on cbxi4b. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jan 23 09:07 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/12673/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/12673/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=ac95ad463fc1425ab628e32f628ad841 LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=12673 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zPjGSAWO/pbuilderrc_upJK --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zPjGSAWO/b2 --logfile b2/build.log r-cran-ncdf4_1.22-1.dsc' SUDO_GID=116 SUDO_UID=112 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:3142/ I: uname -a Linux i-capture-the-hostname 6.1.0-17-armmp #1 SMP Debian 6.1.69-1 (2023-12-30) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jan 22 07:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/12673/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, libnetcdf-dev, netcdf-bin dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19618 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on libnetcdf-dev; however: Package libnetcdf-dev is not installed. pbuilder-satisfydepends-dummy depends on netcdf-bin; however: Package netcdf-bin is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-13{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-gnutls-dev{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-13-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnetcdf-dev{a} libnetcdf19{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libreadline-dev{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1{a} libssl-dev{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libsz2{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxml2-dev{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} m4{a} man-db{a} netcdf-bin{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 190 newly installed, 0 to remove and 0 not upgraded. Need to get 98.2 MB of archives. After unpacking 276 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf tzdata all 2023d-1 [257 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf readline-common all 8.2-3 [69.1 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.20 [19.3 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf openssl armhf 3.1.4-2 [1393 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf ca-certificates all 20230311 [153 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-2+b1 [314 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf libmagic1 armhf 1:5.45-2+b1 [97.9 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-2+b1 [42.2 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.21-14 [157 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1 [65.4 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-3 [1088 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.39.3-6 [81.2 kB] Get: 13 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.7-1+b2 [33.4 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.12.0-3 [1367 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf ucf all 3.0043+nmu1 [55.2 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf autoconf all 2.71-3 [332 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf autopoint all 0.21-14 [496 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf dctrl-tools armhf 2.24-3 [96.0 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.11.10 [82.9 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-7 [517 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 29 http://deb.debian.org/debian unstable/main armhf libelf1 armhf 0.190-1+b1 [171 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1 [101 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-4 [9057 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b2 [599 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.21-14 [1229 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf debhelper all 13.11.10 [882 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf zip armhf 3.0-13 [218 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf unzip armhf 6.0-28 [152 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf libpaper1 armhf 1.1.29 [11.9 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf libpaper-utils armhf 1.1.29 [8400 B] Get: 41 http://deb.debian.org/debian unstable/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf libblas3 armhf 3.11.0-2 [105 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.5.0-2+b2 [80.2 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB] Get: 45 http://deb.debian.org/debian unstable/main armhf libpng16-16 armhf 1.6.40-3 [260 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf libfreetype6 armhf 2.13.2+dfsg-1+b1 [371 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-mono all 2.37-8 [489 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-core all 2.37-8 [840 kB] Get: 49 http://deb.debian.org/debian unstable/main armhf fontconfig-config armhf 2.14.2-6+b1 [316 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf libfontconfig1 armhf 2.14.2-6+b1 [369 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf libpixman-1-0 armhf 0.42.2-1 [465 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf libbsd0 armhf 0.11.8-1 [121 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf libxcb1 armhf 1.15-1 [140 kB] Get: 56 http://deb.debian.org/debian unstable/main armhf libx11-data all 2:1.8.7-1 [328 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf libx11-6 armhf 2:1.8.7-1 [735 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf libxcb-render0 armhf 1.15-1 [114 kB] Get: 59 http://deb.debian.org/debian unstable/main armhf libxcb-shm0 armhf 1.15-1 [106 kB] Get: 60 http://deb.debian.org/debian unstable/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 61 http://deb.debian.org/debian unstable/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.1 kB] Get: 62 http://deb.debian.org/debian unstable/main armhf libcairo2 armhf 1.18.0-1+b1 [441 kB] Get: 63 http://deb.debian.org/debian unstable/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-4+b1 [18.2 kB] Get: 64 http://deb.debian.org/debian unstable/main armhf libsasl2-2 armhf 2.1.28+dfsg1-4+b1 [50.1 kB] Get: 65 http://deb.debian.org/debian unstable/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-5+b3 [158 kB] Get: 66 http://deb.debian.org/debian unstable/main armhf libnghttp2-14 armhf 1.58.0-1 [61.9 kB] Get: 67 http://deb.debian.org/debian unstable/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB] Get: 68 http://deb.debian.org/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 69 http://deb.debian.org/debian unstable/main armhf libssh2-1 armhf 1.11.0-4 [197 kB] Get: 70 http://deb.debian.org/debian unstable/main armhf libcurl4 armhf 8.5.0-2 [383 kB] Get: 71 http://deb.debian.org/debian unstable/main armhf libglib2.0-0 armhf 2.78.3-1 [1282 kB] Get: 72 http://deb.debian.org/debian unstable/main armhf libjpeg62-turbo armhf 1:2.1.5-2+b2 [143 kB] Get: 73 http://deb.debian.org/debian unstable/main armhf libgfortran5 armhf 13.2.0-10 [254 kB] Get: 74 http://deb.debian.org/debian unstable/main armhf liblapack3 armhf 3.11.0-2 [1724 kB] Get: 75 http://deb.debian.org/debian unstable/main armhf fontconfig armhf 2.14.2-6+b1 [461 kB] Get: 76 http://deb.debian.org/debian unstable/main armhf libfribidi0 armhf 1.0.13-3+b1 [69.4 kB] Get: 77 http://deb.debian.org/debian unstable/main armhf libgraphite2-3 armhf 1.3.14-2 [63.2 kB] Get: 78 http://deb.debian.org/debian unstable/main armhf libharfbuzz0b armhf 8.3.0-2 [2155 kB] Get: 79 http://deb.debian.org/debian unstable/main armhf libthai-data all 0.1.29-2 [168 kB] Get: 80 http://deb.debian.org/debian unstable/main armhf libdatrie1 armhf 0.2.13-3 [34.4 kB] Get: 81 http://deb.debian.org/debian unstable/main armhf libthai0 armhf 0.1.29-2 [45.8 kB] Get: 82 http://deb.debian.org/debian unstable/main armhf libpango-1.0-0 armhf 1.51.0+ds-4 [192 kB] Get: 83 http://deb.debian.org/debian unstable/main armhf libpangoft2-1.0-0 armhf 1.51.0+ds-4 [41.2 kB] Get: 84 http://deb.debian.org/debian unstable/main armhf libpangocairo-1.0-0 armhf 1.51.0+ds-4 [31.3 kB] Get: 85 http://deb.debian.org/debian unstable/main armhf libreadline8 armhf 8.2-3 [144 kB] Get: 86 http://deb.debian.org/debian unstable/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [922 kB] Get: 87 http://deb.debian.org/debian unstable/main armhf libdeflate0 armhf 1.18-1 [38.5 kB] Get: 88 http://deb.debian.org/debian unstable/main armhf libjbig0 armhf 2.1-6.1 [27.1 kB] Get: 89 http://deb.debian.org/debian unstable/main armhf liblerc4 armhf 4.0.0+ds-4 [137 kB] Get: 90 http://deb.debian.org/debian unstable/main armhf libsharpyuv0 armhf 1.3.2-0.3 [105 kB] Get: 91 http://deb.debian.org/debian unstable/main armhf libwebp7 armhf 1.3.2-0.3 [260 kB] Get: 92 http://deb.debian.org/debian unstable/main armhf libtiff6 armhf 4.5.1+git230720-3 [301 kB] Get: 93 http://deb.debian.org/debian unstable/main armhf libxft2 armhf 2.3.6-1 [53.8 kB] Get: 94 http://deb.debian.org/debian unstable/main armhf x11-common all 1:7.7+23 [252 kB] Get: 95 http://deb.debian.org/debian unstable/main armhf libxss1 armhf 1:1.2.3-1 [17.2 kB] Get: 96 http://deb.debian.org/debian unstable/main armhf libtk8.6 armhf 8.6.13-2 [689 kB] Get: 97 http://deb.debian.org/debian unstable/main armhf libice6 armhf 2:1.0.10-1 [51.9 kB] Get: 98 http://deb.debian.org/debian unstable/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] Get: 99 http://deb.debian.org/debian unstable/main armhf libxt6 armhf 1:1.2.1-1.1 [157 kB] Get: 100 http://deb.debian.org/debian unstable/main armhf r-base-core armhf 4.3.2-1 [26.4 MB] Get: 101 http://deb.debian.org/debian unstable/main armhf libgfortran-13-dev armhf 13.2.0-10 [306 kB] Get: 102 http://deb.debian.org/debian unstable/main armhf gfortran-13 armhf 13.2.0-10 [7852 kB] Get: 103 http://deb.debian.org/debian unstable/main armhf gfortran armhf 4:13.2.0-2 [1420 B] Get: 104 http://deb.debian.org/debian unstable/main armhf libblas-dev armhf 3.11.0-2 [115 kB] Get: 105 http://deb.debian.org/debian unstable/main armhf liblapack-dev armhf 3.11.0-2 [1798 kB] Get: 106 http://deb.debian.org/debian unstable/main armhf libncurses6 armhf 6.4+20240113-1 [81.8 kB] Get: 107 http://deb.debian.org/debian unstable/main armhf libncurses-dev armhf 6.4+20240113-1 [309 kB] Get: 108 http://deb.debian.org/debian unstable/main armhf libreadline-dev armhf 8.2-3 [137 kB] Get: 109 http://deb.debian.org/debian unstable/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2+b2 [260 kB] Get: 110 http://deb.debian.org/debian unstable/main armhf libjpeg-dev armhf 1:2.1.5-2+b2 [72.1 kB] Get: 111 http://deb.debian.org/debian unstable/main armhf libpcre2-16-0 armhf 10.42-4 [211 kB] Get: 112 http://deb.debian.org/debian unstable/main armhf libpcre2-32-0 armhf 10.42-4 [202 kB] Get: 113 http://deb.debian.org/debian unstable/main armhf libpcre2-posix3 armhf 10.42-4 [55.0 kB] Get: 114 http://deb.debian.org/debian unstable/main armhf libpcre2-dev armhf 10.42-4 [668 kB] Get: 115 http://deb.debian.org/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg-3+b1 [904 kB] Get: 116 http://deb.debian.org/debian unstable/main armhf libpng-dev armhf 1.6.40-3 [343 kB] Get: 117 http://deb.debian.org/debian unstable/main armhf libbz2-dev armhf 1.0.8-5+b2 [28.2 kB] Get: 118 http://deb.debian.org/debian unstable/main armhf liblzma-dev armhf 5.4.5-0.3 [281 kB] Get: 119 http://deb.debian.org/debian unstable/main armhf icu-devtools armhf 72.1-4 [184 kB] Get: 120 http://deb.debian.org/debian unstable/main armhf libicu-dev armhf 72.1-4 [10.1 MB] Get: 121 http://deb.debian.org/debian unstable/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB] Get: 122 http://deb.debian.org/debian unstable/main armhf xauth armhf 1:1.1.2-1 [33.2 kB] Get: 123 http://deb.debian.org/debian unstable/main armhf libpkgconf3 armhf 1.8.1-1+b2 [31.9 kB] Get: 124 http://deb.debian.org/debian unstable/main armhf pkgconf-bin armhf 1.8.1-1+b2 [28.9 kB] Get: 125 http://deb.debian.org/debian unstable/main armhf pkgconf armhf 1.8.1-1+b2 [26.2 kB] Get: 126 http://deb.debian.org/debian unstable/main armhf pkg-config armhf 1.8.1-1+b2 [14.0 kB] Get: 127 http://deb.debian.org/debian unstable/main armhf r-base-dev all 4.3.2-1 [4504 B] Get: 128 http://deb.debian.org/debian unstable/main armhf libfile-which-perl all 1.27-2 [15.1 kB] Get: 129 http://deb.debian.org/debian unstable/main armhf libswitch-perl all 2.17-3 [20.3 kB] Get: 130 http://deb.debian.org/debian unstable/main armhf libclone-perl armhf 0.46-1+b1 [13.2 kB] Get: 131 http://deb.debian.org/debian unstable/main armhf libencode-locale-perl all 1.05-3 [12.9 kB] Get: 132 http://deb.debian.org/debian unstable/main armhf libtimedate-perl all 2.3300-2 [39.3 kB] Get: 133 http://deb.debian.org/debian unstable/main armhf libhttp-date-perl all 6.06-1 [10.7 kB] Get: 134 http://deb.debian.org/debian unstable/main armhf libio-html-perl all 1.004-3 [16.2 kB] Get: 135 http://deb.debian.org/debian unstable/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 136 http://deb.debian.org/debian unstable/main armhf liburi-perl all 5.21-1 [95.6 kB] Get: 137 http://deb.debian.org/debian unstable/main armhf libhttp-message-perl all 6.45-1 [82.0 kB] Get: 138 http://deb.debian.org/debian unstable/main armhf libparams-util-perl armhf 1.102-2+b2 [23.3 kB] Get: 139 http://deb.debian.org/debian unstable/main armhf libsub-install-perl all 0.929-1 [10.5 kB] Get: 140 http://deb.debian.org/debian unstable/main armhf libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 141 http://deb.debian.org/debian unstable/main armhf libb-hooks-op-check-perl armhf 0.22-2+b2 [10.3 kB] Get: 142 http://deb.debian.org/debian unstable/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get: 143 http://deb.debian.org/debian unstable/main armhf libdevel-callchecker-perl armhf 0.008-2+b1 [14.9 kB] Get: 144 http://deb.debian.org/debian unstable/main armhf libparams-classify-perl armhf 0.015-2+b2 [21.3 kB] Get: 145 http://deb.debian.org/debian unstable/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 146 http://deb.debian.org/debian unstable/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 147 http://deb.debian.org/debian unstable/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 148 http://deb.debian.org/debian unstable/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 149 http://deb.debian.org/debian unstable/main armhf libclass-load-perl all 0.25-2 [15.3 kB] Get: 150 http://deb.debian.org/debian unstable/main armhf libclass-load-xs-perl armhf 0.10-2+b2 [13.8 kB] Get: 151 http://deb.debian.org/debian unstable/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 152 http://deb.debian.org/debian unstable/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 153 http://deb.debian.org/debian unstable/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 154 http://deb.debian.org/debian unstable/main armhf libclass-c3-perl all 0.35-2 [21.0 kB] Get: 155 http://deb.debian.org/debian unstable/main armhf libmro-compat-perl all 0.15-2 [11.8 kB] Get: 156 http://deb.debian.org/debian unstable/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 157 http://deb.debian.org/debian unstable/main armhf libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 158 http://deb.debian.org/debian unstable/main armhf libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 159 http://deb.debian.org/debian unstable/main armhf libeval-closure-perl all 0.14-3 [11.2 kB] Get: 160 http://deb.debian.org/debian unstable/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 161 http://deb.debian.org/debian unstable/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 162 http://deb.debian.org/debian unstable/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 163 http://deb.debian.org/debian unstable/main armhf libpackage-stash-xs-perl armhf 0.30-1+b2 [18.4 kB] Get: 164 http://deb.debian.org/debian unstable/main armhf libmoose-perl armhf 2.2207-1 [764 kB] Get: 165 http://deb.debian.org/debian unstable/main armhf libvariable-magic-perl armhf 0.63-1+b2 [41.4 kB] Get: 166 http://deb.debian.org/debian unstable/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get: 167 http://deb.debian.org/debian unstable/main armhf libsub-identify-perl armhf 0.14-3+b1 [10.8 kB] Get: 168 http://deb.debian.org/debian unstable/main armhf libsub-name-perl armhf 0.27-1+b1 [12.0 kB] Get: 169 http://deb.debian.org/debian unstable/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 170 http://deb.debian.org/debian unstable/main armhf libcurl3-gnutls armhf 8.5.0-2 [378 kB] Get: 171 http://deb.debian.org/debian unstable/main armhf libwww-curl-perl armhf 4.17-10+b1 [56.2 kB] Get: 172 http://deb.debian.org/debian unstable/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 173 http://deb.debian.org/debian unstable/main armhf dh-r all 20231212 [42.2 kB] Get: 174 http://deb.debian.org/debian unstable/main armhf hdf5-helpers armhf 1.10.10+repack-3 [23.2 kB] Get: 175 http://deb.debian.org/debian unstable/main armhf libaec0 armhf 1.1.2-1 [21.4 kB] Get: 176 http://deb.debian.org/debian unstable/main armhf libsz2 armhf 1.1.2-1 [7668 B] Get: 177 http://deb.debian.org/debian unstable/main armhf libaec-dev armhf 1.1.2-1 [18.6 kB] Get: 178 http://deb.debian.org/debian unstable/main armhf libcurl4-gnutls-dev armhf 8.5.0-2 [490 kB] Get: 179 http://deb.debian.org/debian unstable/main armhf libhdf5-103-1 armhf 1.10.10+repack-3 [1185 kB] Get: 180 http://deb.debian.org/debian unstable/main armhf libhdf5-cpp-103-1 armhf 1.10.10+repack-3 [120 kB] Get: 181 http://deb.debian.org/debian unstable/main armhf libhdf5-fortran-102 armhf 1.10.10+repack-3 [77.6 kB] Get: 182 http://deb.debian.org/debian unstable/main armhf libhdf5-hl-100 armhf 1.10.10+repack-3 [60.5 kB] Get: 183 http://deb.debian.org/debian unstable/main armhf libhdf5-hl-fortran-100 armhf 1.10.10+repack-3 [34.1 kB] Get: 184 http://deb.debian.org/debian unstable/main armhf libhdf5-hl-cpp-100 armhf 1.10.10+repack-3 [20.5 kB] Get: 185 http://deb.debian.org/debian unstable/main armhf libssl-dev armhf 3.1.4-2 [2149 kB] Get: 186 http://deb.debian.org/debian unstable/main armhf libhdf5-dev armhf 1.10.10+repack-3 [2606 kB] Get: 187 http://deb.debian.org/debian unstable/main armhf libnetcdf19 armhf 1:4.9.2-3 [418 kB] Get: 188 http://deb.debian.org/debian unstable/main armhf libxml2-dev armhf 2.9.14+dfsg-1.3+b2 [717 kB] Get: 189 http://deb.debian.org/debian unstable/main armhf libnetcdf-dev armhf 1:4.9.2-3 [103 kB] Get: 190 http://deb.debian.org/debian unstable/main armhf netcdf-bin armhf 1:4.9.2-3 [233 kB] Fetched 98.2 MB in 26s (3710 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19618 files and directories currently installed.) Preparing to unpack .../000-tzdata_2023d-1_all.deb ... Unpacking tzdata (2023d-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-3_all.deb ... Unpacking readline-common (8.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.20_all.deb ... Unpacking sensible-utils (0.0.20) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_3.1.4-2_armhf.deb ... Unpacking openssl (3.1.4-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-2+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../006-libmagic1_1%3a5.45-2+b1_armhf.deb ... Unpacking libmagic1:armhf (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.45-2+b1_armhf.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.21-14_armhf.deb ... Unpacking gettext-base (0.21-14) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../009-libuchardet0_0.0.8-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-3_armhf.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.39.3-6_armhf.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../012-libpipeline1_1.5.7-1+b2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-1+b2) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.12.0-3_armhf.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../015-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../016-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../017-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../018-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../019-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../020-dctrl-tools_2.24-3_armhf.deb ... Unpacking dctrl-tools (2.24-3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../021-libdebhelper-perl_13.11.10_all.deb ... Unpacking libdebhelper-perl (13.11.10) ... Selecting previously unselected package libtool. Preparing to unpack .../022-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../023-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../024-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../025-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../026-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../027-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../028-libelf1_0.190-1+b1_armhf.deb ... Unpacking libelf1:armhf (0.190-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../029-dwz_0.15-1_armhf.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../030-libicu72_72.1-4_armhf.deb ... Unpacking libicu72:armhf (72.1-4) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../031-libxml2_2.9.14+dfsg-1.3+b2_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../032-gettext_0.21-14_armhf.deb ... Unpacking gettext (0.21-14) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../033-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../034-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../035-debhelper_13.11.10_all.deb ... Unpacking debhelper (13.11.10) ... Selecting previously unselected package zip. Preparing to unpack .../036-zip_3.0-13_armhf.deb ... Unpacking zip (3.0-13) ... Selecting previously unselected package unzip. Preparing to unpack .../037-unzip_6.0-28_armhf.deb ... Unpacking unzip (6.0-28) ... Selecting previously unselected package libpaper1:armhf. Preparing to unpack .../038-libpaper1_1.1.29_armhf.deb ... Unpacking libpaper1:armhf (1.1.29) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../039-libpaper-utils_1.1.29_armhf.deb ... Unpacking libpaper-utils (1.1.29) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../040-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package libblas3:armhf. Preparing to unpack .../041-libblas3_3.11.0-2_armhf.deb ... Unpacking libblas3:armhf (3.11.0-2) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../042-libexpat1_2.5.0-2+b2_armhf.deb ... Unpacking libexpat1:armhf (2.5.0-2+b2) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../043-libbrotli1_1.1.0-2+b3_armhf.deb ... Unpacking libbrotli1:armhf (1.1.0-2+b3) ... Selecting previously unselected package libpng16-16:armhf. Preparing to unpack .../044-libpng16-16_1.6.40-3_armhf.deb ... Unpacking libpng16-16:armhf (1.6.40-3) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../045-libfreetype6_2.13.2+dfsg-1+b1_armhf.deb ... Unpacking libfreetype6:armhf (2.13.2+dfsg-1+b1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../046-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../047-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../048-fontconfig-config_2.14.2-6+b1_armhf.deb ... Unpacking fontconfig-config (2.14.2-6+b1) ... Selecting previously unselected package libfontconfig1:armhf. Preparing to unpack .../049-libfontconfig1_2.14.2-6+b1_armhf.deb ... Unpacking libfontconfig1:armhf (2.14.2-6+b1) ... Selecting previously unselected package libpixman-1-0:armhf. Preparing to unpack .../050-libpixman-1-0_0.42.2-1_armhf.deb ... Unpacking libpixman-1-0:armhf (0.42.2-1) ... Selecting previously unselected package libxau6:armhf. Preparing to unpack .../051-libxau6_1%3a1.0.9-1_armhf.deb ... Unpacking libxau6:armhf (1:1.0.9-1) ... Selecting previously unselected package libbsd0:armhf. 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Unpacking libnetcdf19:armhf (1:4.9.2-3) ... Selecting previously unselected package libxml2-dev:armhf. Preparing to unpack .../187-libxml2-dev_2.9.14+dfsg-1.3+b2_armhf.deb ... Unpacking libxml2-dev:armhf (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package libnetcdf-dev. Preparing to unpack .../188-libnetcdf-dev_1%3a4.9.2-3_armhf.deb ... Unpacking libnetcdf-dev (1:4.9.2-3) ... Selecting previously unselected package netcdf-bin. Preparing to unpack .../189-netcdf-bin_1%3a4.9.2-3_armhf.deb ... Unpacking netcdf-bin (1:4.9.2-3) ... Setting up libexpat1:armhf (2.5.0-2+b2) ... Setting up libpipeline1:armhf (1.5.7-1+b2) ... Setting up libgraphite2-3:armhf (1.3.14-2) ... Setting up libpixman-1-0:armhf (0.42.2-1) ... Setting up libsharpyuv0:armhf (1.3.2-0.3) ... Setting up libfile-which-perl (1.27-2) ... Setting up libxau6:armhf (1:1.0.9-1) ... Setting up libpsl5:armhf (0.21.2-1+b1) ... Setting up libicu72:armhf (72.1-4) ... Setting up liblerc4:armhf (4.0.0+ds-4) ... Setting up bsdextrautils (2.39.3-6) ... Setting up hdf5-helpers (1.10.10+repack-3) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libdatrie1:armhf (0.2.13-3) ... Setting up libmagic-mgc (1:5.45-2+b1) ... Setting up libclone-perl:armhf (0.46-1+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libsub-identify-perl (0.14-3+b1) ... Setting up libglib2.0-0:armhf (2.78.3-1) ... No schema files found: doing nothing. Setting up unzip (6.0-28) ... Setting up libdebhelper-perl (13.11.10) ... Setting up libbrotli1:armhf (1.1.0-2+b3) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.31-2) ... Setting up libnghttp2-14:armhf (1.58.0-1) ... Setting up libmagic1:armhf (1:5.45-2+b1) ... Setting up libdeflate0:armhf (1.18-1) ... Setting up gettext-base (0.21-14) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.45-2+b1) ... Setting up libjbig0:armhf (2.1-6.1) ... Setting up libpcre2-16-0:armhf (10.42-4) ... Setting up libaec0:armhf (1.1.2-1) ... Setting up libsub-install-perl (0.929-1) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-4+b1) ... Setting up tzdata (2023d-1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Jan 23 09:12:49 UTC 2024. Universal Time is now: Tue Jan 23 09:12:49 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-13) ... Setting up libpackage-stash-xs-perl:armhf (0.30-1+b2) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:armhf (10.42-4) ... Setting up libblas3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libpkgconf3:armhf (1.8.1-1+b2) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libjpeg62-turbo:armhf (1:2.1.5-2+b2) ... Setting up libswitch-perl (2.17-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjpeg62-turbo-dev:armhf (1:2.1.5-2+b2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:armhf (6.4+20240113-1) ... Setting up libfribidi0:armhf (1.0.13-3+b1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libssl-dev:armhf (3.1.4-2) ... Setting up libpng16-16:armhf (1.6.40-3) ... Setting up libvariable-magic-perl (0.63-1+b2) ... Setting up libio-html-perl (1.004-3) ... Setting up libtcl8.6:armhf (8.6.13+dfsg-2) ... Setting up autopoint (0.21-14) ... Setting up libb-hooks-op-check-perl:armhf (0.22-2+b2) ... Setting up icu-devtools (72.1-4) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up pkgconf-bin (1.8.1-1+b2) ... Setting up libparams-util-perl (1.102-2+b2) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-4+b1) ... Setting up libgfortran5:armhf (13.2.0-10) ... Setting up autoconf (2.71-3) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libwebp7:armhf (1.3.2-0.3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:armhf (5.4.5-0.3) ... Setting up libsub-name-perl:armhf (0.27-1+b1) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg-3+b1) ... Setting up libpcre2-posix3:armhf (10.42-4) ... Setting up sensible-utils (0.0.20) ... Setting up libtiff6:armhf (4.5.1+git230720-3) ... Setting up libuchardet0:armhf (0.0.8-1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libthai-data (0.1.29-2) ... Setting up libdevel-globaldestruction-perl (0.14-4) ... Setting up libssh2-1:armhf (1.11.0-4) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libgfortran-13-dev:armhf (13.2.0-10) ... Setting up openssl (3.1.4-2) ... Setting up libbsd0:armhf (0.11.8-1) ... Setting up libelf1:armhf (0.190-1+b1) ... Setting up readline-common (8.2-3) ... Setting up libicu-dev:armhf (72.1-4) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.21-1) ... Setting up libblas-dev:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up libsz2:armhf (1.1.2-1) ... Setting up dctrl-tools (2.24-3) ... Setting up libbz2-dev:armhf (1.0.8-5+b2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libice6:armhf (2:1.0.10-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up liblapack3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libncurses-dev:armhf (6.4+20240113-1) ... Setting up libxcb1:armhf (1.15-1) ... Setting up gettext (0.21-14) ... Setting up libpcre2-dev:armhf (10.42-4) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:armhf (1.15-1) ... Setting up fontconfig-config (2.14.2-6+b1) ... Setting up libreadline8:armhf (8.2-3) ... Setting up libpng-dev:armhf (1.6.40-3) ... Setting up libaec-dev:armhf (1.1.2-1) ... Setting up libjpeg-dev:armhf (1:2.1.5-2+b2) ... Setting up libxcb-shm0:armhf (1.15-1) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libreadline-dev:armhf (8.2-3) ... Setting up libdevel-callchecker-perl:armhf (0.008-2+b1) ... Setting up libldap-2.5-0:armhf (2.5.13+dfsg-5+b3) ... Setting up pkgconf:armhf (1.8.1-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:armhf (0.1.29-2) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libxml2-dev:armhf (2.9.14+dfsg-1.3+b2) ... Setting up libfreetype6:armhf (2.13.2+dfsg-1+b1) ... Setting up gfortran-13 (13.2.0-10) ... Setting up liblapack-dev:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libdata-optlist-perl (0.114-1) ... Setting up pkg-config:armhf (1.8.1-1+b2) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libcurl4:armhf (8.5.0-2) ... Setting up libx11-6:armhf (2:1.8.7-1) ... Setting up libharfbuzz0b:armhf (8.3.0-2) ... Setting up libfontconfig1:armhf (2.14.2-6+b1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up libxmuu1:armhf (2:1.1.3-3) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libpaper1:armhf (1.1.29) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.14.2-6+b1) ... Regenerating fonts cache... done. Setting up libxrender1:armhf (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl:armhf (0.015-2+b2) ... Setting up libpango-1.0-0:armhf (1.51.0+ds-4) ... Setting up libxext6:armhf (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:armhf (8.5.0-2) ... Setting up libpaper-utils (1.1.29) ... Setting up libcurl4-gnutls-dev:armhf (8.5.0-2) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:13.2.0-2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:armhf (1.18.0-1+b1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libxt6:armhf (1:1.2.1-1.1) ... Setting up libhdf5-103-1:armhf (1.10.10+repack-3) ... Setting up xauth (1:1.1.2-1) ... Setting up libhdf5-cpp-103-1:armhf (1.10.10+repack-3) ... Setting up libxss1:armhf (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:armhf (1.51.0+ds-4) ... Setting up libpangocairo-1.0-0:armhf (1.51.0+ds-4) ... Setting up libhdf5-hl-100:armhf (1.10.10+repack-3) ... Setting up libxft2:armhf (2.3.6-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libtk8.6:armhf (8.6.13-2) ... Setting up libwww-curl-perl:armhf (4.17-10+b1) ... Setting up debhelper (13.11.10) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up libhdf5-hl-cpp-100:armhf (1.10.10+repack-3) ... Setting up r-base-core (4.3.2-1) ... Creating config file /etc/R/Renviron with new version Setting up libhdf5-fortran-102:armhf (1.10.10+repack-3) ... Setting up libnetcdf19:armhf (1:4.9.2-3) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libhdf5-hl-fortran-100:armhf (1.10.10+repack-3) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up r-base-dev (4.3.2-1) ... Setting up libmoose-perl:armhf (2.2207-1) ... Setting up netcdf-bin (1:4.9.2-3) ... Setting up libhdf5-dev (1.10.10+repack-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnamespace-clean-perl (0.27-2) ... Setting up libnetcdf-dev (1:4.9.2-3) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up dh-r (20231212) ... Processing triggers for libc-bin (2.37-13) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/12673/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/12673/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/r-cran-ncdf4-1.22/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-cran-ncdf4_1.22-1_source.changes dpkg-buildpackage: info: source package r-cran-ncdf4 dpkg-buildpackage: info: source version 1.22-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-cran-ncdf4/ -O--buildsystem=R I: R Package: ncdf4 Version: 1.22 I: Building using R version 4.3.2-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Tue, 09 Jan 2024 07:44:43 +0100 mkdir -p /build/reproducible-path/r-cran-ncdf4-1.22/debian/r-cran-ncdf4/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-cran-ncdf4-1.22/debian/r-cran-ncdf4/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 09 Jan 2024 07:44:43 +0100'" * installing *source* package 'ncdf4' ... files 'configure', 'configure.ac' have the wrong MD5 checksums ** using staged installation configure.ac: starting checking for nc-config... yes Using nc-config: nc-config Output of nc-config --all: This netCDF 4.9.2 has been built with the following features: --cc -> /usr/bin/cc --cflags -> -I/usr/include -I/usr/include/hdf5/serial --libs -> -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lnetcdf --static -> -lhdf5_hl -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lxml2 --has-dap -> yes --has-dap2 -> yes --has-dap4 -> yes --has-nc2 -> yes --has-nc4 -> yes --has-hdf5 -> yes --has-hdf4 -> no --has-logging -> no --has-pnetcdf -> no --has-szlib -> no --has-cdf5 -> no --has-parallel4 -> no --has-parallel -> no --has-nczarr -> yes --has-zstd -> yes --has-benchmarks -> no --has-multifilters -> no --has-stdfilters -> deflate szip bz2 --has-quantize -> no --prefix -> /usr --includedir -> /usr/include --libdir -> /usr/lib/arm-linux-gnueabihf --plugindir -> --version -> netCDF 4.9.2 --- netcdf.m4: about to set rpath, here is source string: >-L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lnetcdf< netcdf.m4: final rpath: -Wl,-rpath,/usr/lib/arm-linux-gnueabihf -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/hdf5/serial Netcdf library version: netCDF 4.9.2 Netcdf library has version 4 interface present: yes Netcdf library was compiled with C compiler: /usr/bin/cc configure: creating ./config.status config.status: creating src/Makevars ********************** Results of ncdf4 package configure ******************* netCDF v4 CPP flags = -I/usr/include -I/usr/include/hdf5/serial netCDF v4 LD flags = -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lnetcdf -Wl,-z,relro netCDF v4 runtime path = -Wl,-rpath,/usr/lib/arm-linux-gnueabihf -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/hdf5/serial netCDF C compiler used = /usr/bin/cc R C compiler used = gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 ****************************************************************************** checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed netcdf cc arg1: /usr/bin/cc R cc arg1: gcc R_IS_GCC: 1 R_IS_CLANG: 0 NETCDF_IS_GCC: 1 NETCDF_IS_CLANG: 0 emit_warning: 0 ** libs using C compiler: 'gcc (Debian 13.2.0-10) 13.2.0' make[1]: Entering directory '/build/reproducible-path/r-cran-ncdf4-1.22/src' gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include -I/usr/include/hdf5/serial -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ncdf.c -o ncdf.o gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o ncdf4.so ncdf.o -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lnetcdf -Wl,-z,relro -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/reproducible-path/r-cran-ncdf4-1.22/src' make[1]: Entering directory '/build/reproducible-path/r-cran-ncdf4-1.22/src' make[1]: Leaving directory '/build/reproducible-path/r-cran-ncdf4-1.22/src' installing to /build/reproducible-path/r-cran-ncdf4-1.22/debian/r-cran-ncdf4/usr/lib/R/site-library/00LOCK-r-cran-ncdf4-1.22/00new/ncdf4/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ncdf4) I: Use r-cran-ncdf4 as Debian binary package for variables substitution debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/r-cran-ncdf4-1.22' dh_install find debian -name HDF5_COPYING -delete make[1]: Leaving directory '/build/reproducible-path/r-cran-ncdf4-1.22' dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-cran-ncdf4-dbgsym' in '../r-cran-ncdf4-dbgsym_1.22-1_armhf.deb'. dpkg-deb: building package 'r-cran-ncdf4' in '../r-cran-ncdf4_1.22-1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../r-cran-ncdf4_1.22-1_armhf.buildinfo dpkg-genchanges --build=binary -O../r-cran-ncdf4_1.22-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/12673/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/12673/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/12673 and its subdirectories I: Current time: Tue Jan 23 23:21:15 +14 2024 I: pbuilder-time-stamp: 1706001675