I: pbuilder: network access will be disabled during build I: Current time: Sun Jun 30 20:25:55 -12 2024 I: pbuilder-time-stamp: 1719822355 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [nim-hts_0.3.19+ds-1.dsc] I: copying [./nim-hts_0.3.19+ds.orig.tar.xz] I: copying [./nim-hts_0.3.19+ds-1.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Oct 19 09:36:07 2021 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./nim-hts_0.3.19+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting nim-hts in nim-hts-0.3.19+ds dpkg-source: info: unpacking nim-hts_0.3.19+ds.orig.tar.xz dpkg-source: info: unpacking nim-hts_0.3.19+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying dontDoNestedTests.patch dpkg-source: info: applying disable-test-with-sourceless-file.patch dpkg-source: info: applying fix-version-comparision.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/7924/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='0f82e1fbdbf9449b97d0abcef0e47cf0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='7924' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.lMMSnLua/pbuilderrc_y5LA --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.lMMSnLua/b1 --logfile b1/build.log nim-hts_0.3.19+ds-1.dsc' SUDO_GID='110' SUDO_UID='103' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64z 6.1.0-22-arm64 #1 SMP Debian 6.1.94-1 (2024-06-21) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 5 22:35 /bin -> usr/bin I: user script /srv/workspace/pbuilder/7924/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), nim, libhts-dev, samtools, tabix, bcftools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19412 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on nim; however: Package nim is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on tabix; however: Package tabix is not installed. pbuilder-satisfydepends-dummy depends on bcftools; however: Package bcftools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bcftools{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libpcre3{a} libpipeline1{a} libpsl5t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} nim{a} po-debconf{a} samtools{a} sensible-utils{a} tabix{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl git krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-gffutils python3-matplotlib wget 0 packages upgraded, 58 newly installed, 0 to remove and 0 not upgraded. Need to get 30.6 MB of archives. After unpacking 101 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.22.5-1 [195 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-4 [1090 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.1-9 [87.8 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.12.1-2 [1376 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf autopoint all 0.22.5-1 [723 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.21.3-1 [29.9 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.1-1 [22.1 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.21.3-1 [75.7 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 21 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.21.3-1 [283 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.21.3-1 [114 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-6 [18.0 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf libsasl2-2 armhf 2.1.28+dfsg1-6 [50.1 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf libldap-2.5-0 armhf 2.5.18+dfsg-1 [162 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf libnghttp2-14 armhf 1.62.1-1 [63.1 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.6 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b4 [53.2 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf libssh2-1t64 armhf 1.11.0-5 [199 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf libcurl3t64-gnutls armhf 8.8.0-1 [389 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf libdeflate0 armhf 1.20-1 [35.9 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf libhtscodecs2 armhf 1.6.0-1+b1 [61.3 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf libhts3t64 armhf 1.20+ds-1 [399 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf bcftools armhf 1.20-2 [671 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.16 [88.6 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-7 [517 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 41 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.191-1+b1 [183 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg-3 [583 kB] Get: 45 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.22.5-1 [1479 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf debhelper all 13.16 [891 kB] Get: 49 http://deb.debian.org/debian unstable/main armhf libcurl4-gnutls-dev armhf 8.8.0-1 [505 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf libdeflate-dev armhf 1.20-1 [44.0 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf liblzma-dev armhf 5.6.2-1 [288 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1 [904 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf libhts-dev armhf 1.20+ds-1 [1611 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf libncurses6 armhf 6.5-2 [81.8 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf libpcre3 armhf 2:8.39-15+b1 [316 kB] Get: 56 http://deb.debian.org/debian unstable/main armhf nim armhf 1.6.14-3 [4012 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf samtools armhf 1.20-3 [620 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf tabix armhf 1.20+ds-1 [415 kB] Fetched 30.6 MB in 1s (29.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19412 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_armhf.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-1_armhf.deb ... Unpacking gettext-base (0.22.5-1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-4_armhf.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.1-9_armhf.deb ... Unpacking bsdextrautils (2.40.1-9) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.7-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.1-2_armhf.deb ... Unpacking man-db (2.12.1-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-1_all.deb ... Unpacking autopoint (0.22.5-1) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../15-libbrotli1_1.1.0-2+b3_armhf.deb ... Unpacking libbrotli1:armhf (1.1.0-2+b3) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../16-libkrb5support0_1.21.3-1_armhf.deb ... Unpacking libkrb5support0:armhf (1.21.3-1) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../17-libcom-err2_1.47.1-1_armhf.deb ... Unpacking libcom-err2:armhf (1.47.1-1) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../18-libk5crypto3_1.21.3-1_armhf.deb ... Unpacking libk5crypto3:armhf (1.21.3-1) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../19-libkeyutils1_1.6.3-3_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-3) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../20-libkrb5-3_1.21.3-1_armhf.deb ... Unpacking libkrb5-3:armhf (1.21.3-1) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../21-libgssapi-krb5-2_1.21.3-1_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.21.3-1) ... Selecting previously unselected package libsasl2-modules-db:armhf. Preparing to unpack .../22-libsasl2-modules-db_2.1.28+dfsg1-6_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.28+dfsg1-6) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../23-libsasl2-2_2.1.28+dfsg1-6_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.28+dfsg1-6) ... Selecting previously unselected package libldap-2.5-0:armhf. Preparing to unpack .../24-libldap-2.5-0_2.5.18+dfsg-1_armhf.deb ... Unpacking libldap-2.5-0:armhf (2.5.18+dfsg-1) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../25-libnghttp2-14_1.62.1-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.62.1-1) ... Selecting previously unselected package libpsl5t64:armhf. Preparing to unpack .../26-libpsl5t64_0.21.2-1.1_armhf.deb ... Unpacking libpsl5t64:armhf (0.21.2-1.1) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../27-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:armhf. Preparing to unpack .../28-libssh2-1t64_1.11.0-5_armhf.deb ... Unpacking libssh2-1t64:armhf (1.11.0-5) ... Selecting previously unselected package libcurl3t64-gnutls:armhf. Preparing to unpack .../29-libcurl3t64-gnutls_8.8.0-1_armhf.deb ... Unpacking libcurl3t64-gnutls:armhf (8.8.0-1) ... Selecting previously unselected package libdeflate0:armhf. Preparing to unpack .../30-libdeflate0_1.20-1_armhf.deb ... Unpacking libdeflate0:armhf (1.20-1) ... Selecting previously unselected package libhtscodecs2:armhf. Preparing to unpack .../31-libhtscodecs2_1.6.0-1+b1_armhf.deb ... Unpacking libhtscodecs2:armhf (1.6.0-1+b1) ... Selecting previously unselected package libhts3t64:armhf. Preparing to unpack .../32-libhts3t64_1.20+ds-1_armhf.deb ... Unpacking libhts3t64:armhf (1.20+ds-1) ... Selecting previously unselected package bcftools. Preparing to unpack .../33-bcftools_1.20-2_armhf.deb ... Unpacking bcftools (1.20-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../34-libdebhelper-perl_13.16_all.deb ... Unpacking libdebhelper-perl (13.16) ... Selecting previously unselected package libtool. Preparing to unpack .../35-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../36-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../37-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../38-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../39-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../40-libelf1t64_0.191-1+b1_armhf.deb ... Unpacking libelf1t64:armhf (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../41-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../42-libicu72_72.1-4+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-4+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../43-libxml2_2.12.7+dfsg-3_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg-3) ... Selecting previously unselected package gettext. 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Processing triggers for libc-bin (2.38-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/nim-hts-0.3.19+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../nim-hts_0.3.19+ds-1_source.changes dpkg-buildpackage: info: source package nim-hts dpkg-buildpackage: info: source version 0.3.19+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/nim-hts-0.3.19+ds' dh_auto_clean # remnants from testing rm -f ____t.vcf t.gz ti.txt.gz ti.txt.gz.csi rm -f tests/run tests/HG02002.bam.csi tests/auxtest tests/newsample.vcf tests/outmissing.vcf tests/outv.vcf tests/outz.vcf tests/sample.fa.fai tests/all tests/htstest tests/bgzftest tests/bamtest rm -rf tests/nimcache make[1]: Leaving directory '/build/reproducible-path/nim-hts-0.3.19+ds' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/nim-hts-dev.substvars debian/nim-hts-examples.substvars debian/files rm -fr -- debian/nim-hts-dev/ debian/tmp/ debian/nim-hts-examples/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/nim-hts-0.3.19+ds' dh_auto_build # Regenerate repacked files cat tests/sa.sam | samtools view -Sb - > tests/sa.bam samtools index tests/sa.bam tests/sa.bam.bai cat debian/missing-sources/HG02002.sam | samtools view -Sb - > tests/HG02002.bam samtools index tests/HG02002.bam tests/HG02002.bam.bai tabix tests/test.vcf.gz bcftools index tests/test.bcf make[1]: Leaving directory '/build/reproducible-path/nim-hts-0.3.19+ds' rm -f debian/nim-hts-dev.debhelper.log debian/nim-hts-examples.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/nim-hts-0.3.19+ds' nim c --nimcache:/build/reproducible-path/nim-hts-0.3.19+ds/tests/nimcache tests/all.nim Hint: used config file '/etc/nim/nim.cfg' [Conf] Hint: used config file '/etc/nim/config.nims' [Conf] Hint: used config file '/build/reproducible-path/nim-hts-0.3.19+ds/tests/nim.cfg' [Conf] ............................................................................................................. /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/flag.nim(1, 18) Hint: duplicate import of 'hts_concat'; previous import here: /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam.nim(1, 17) [DuplicateModuleImport] . /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/cigar.nim(1, 18) Hint: duplicate import of 'hts_concat'; previous import here: /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/flag.nim(1, 18) [DuplicateModuleImport] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/cigar.nim(2, 8) Hint: duplicate import of 'strutils'; previous import here: /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam.nim(4, 8) [DuplicateModuleImport] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/cigar.nim(57, 34) Warning: target type is larger than source type [CastSizes] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam.nim(248, 34) template/generic instantiation of `bam_get_cigar` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/cigar.nim(52, 46) Warning: target type is larger than source type [CastSizes] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam.nim(262, 52) Warning: implicit conversion to 'cstring' from a non-const location: region; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam.nim(373, 28) Warning: implicit conversion to 'cstring' from a non-const location: mode; this will become a compile time error in the future [CStringConv] .. /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/auxtags.nim(3, 1) Hint: duplicate import of 'strformat'; previous import here: /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam.nim(3, 8) [DuplicateModuleImport] .... /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(118, 18) Warning: conversion to enum with holes is unsafe: Status(ret) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(119, 16) Warning: conversion to enum with holes is unsafe: Status(bcf_hdr_sync(h.hdr)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(181, 16) Warning: conversion to enum with holes is unsafe: Status(bcf_hdr_sync(h.hdr)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(190, 16) Warning: conversion to enum with holes is unsafe: Status(bcf_hdr_sync(h.hdr)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(288, 18) Warning: conversion to enum with holes is unsafe: Status(int(bcf_update_format(f.v.vcf.header.hdr, f.v.c, cstring(key), nil, 0, cint(htype)))) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(297, 20) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(309, 22) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(320, 22) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(352, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(359, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(366, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(376, 20) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(391, 20) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(405, 20) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(432, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(436, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(441, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(461, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(467, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(527, 23) Warning: conversion to enum with holes is unsafe: BCF_TYPE(fmt.type) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(542, 23) Warning: conversion to enum with holes is unsafe: BCF_TYPE(fld.type) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(601, 27) Warning: implicit conversion to 'cstring' from a non-const location: v.fname; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(603, 31) Warning: implicit conversion to 'cstring' from a non-const location: v.fname; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(645, 30) Warning: implicit conversion to 'cstring' from a non-const location: v.fname; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(664, 36) Warning: implicit conversion to 'cstring' from a non-const location: `[]`(region) do: 0 .. pred(cidx, 1); this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(700, 32) Warning: implicit conversion to 'cstring' from a non-const location: v.fname; this will become a compile time error in the future [CStringConv] . /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/fai.nim(38, 24) Warning: See corresponding Defect; IndexError is deprecated [Deprecated] ... /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/csi.nim(17, 51) Warning: implicit conversion to 'cstring' from a non-const location: base_path & ".csi"; this will become a compile time error in the future [CStringConv] ... /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(4, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(10, 18) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/auxtags.nim(53, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(4, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(13, 19) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/auxtags.nim(71, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(4, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(13, 19) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/auxtags.nim(74, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(4, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(17, 19) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/auxtags.nim(63, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(4, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(17, 19) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/auxtags.nim(66, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(4, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(17, 19) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/auxtags.nim(74, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(3, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(25, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/auxtest.nim(40, 18) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bam/auxtags.nim(58, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] . /build/reproducible-path/nim-hts-0.3.19+ds/tests/vcftest.nim(23, 7) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/vcftest.nim(46, 8) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.19+ds/tests/vcftest.nim(63, 13) template/generic instantiation of `check` from here /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(448, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.19+ds/tests/vcftest.nim(404, 7) Hint: 'current_line' is declared but not used [XDeclaredButNotUsed] /build/reproducible-path/nim-hts-0.3.19+ds/tests/vcftest.nim(406, 7) Hint: 'currentBlock' is declared but not used [XDeclaredButNotUsed] /build/reproducible-path/nim-hts-0.3.19+ds/tests/vcftest.nim(411, 7) Hint: 'block_pos_i' is declared but not used [XDeclaredButNotUsed] ..... CC: ../../../../usr/lib/nim/lib/std/private/digitsutils.nim CC: ../../../../usr/lib/nim/lib/system/assertions.nim CC: ../../../../usr/lib/nim/lib/system/formatfloat.nim CC: ../../../../usr/lib/nim/lib/system/dollars.nim CC: ../../../../usr/lib/nim/lib/system/io.nim CC: ../../../../usr/lib/nim/lib/system.nim CC: ../../../../usr/lib/nim/lib/std/exitprocs.nim CC: ../../../../usr/lib/nim/lib/pure/parseutils.nim CC: ../../../../usr/lib/nim/lib/pure/math.nim CC: ../../../../usr/lib/nim/lib/pure/algorithm.nim CC: ../../../../usr/lib/nim/lib/pure/unicode.nim CC: ../../../../usr/lib/nim/lib/pure/strutils.nim CC: ../../../../usr/lib/nim/lib/pure/streams.nim CC: ../../../../usr/lib/nim/lib/pure/times.nim CC: ../../../../usr/lib/nim/lib/pure/hashes.nim CC: ../../../../usr/lib/nim/lib/pure/collections/sets.nim CC: ../../../../usr/lib/nim/lib/pure/os.nim CC: ../../../../usr/lib/nim/lib/pure/strformat.nim CC: ../../../../usr/lib/nim/lib/pure/terminal.nim CC: ../../../../usr/lib/nim/lib/pure/unittest.nim CC: ../src/hts/private/hts_concat.nim CC: ../src/hts/bam/flag.nim CC: flagtest.nim CC: ../src/hts/bam.nim CC: cigartest.nim CC: htstest.nim CC: ../src/hts/vcf.nim CC: ../src/hts/fai.nim CC: ../src/hts/bgzf.nim CC: ../src/hts/csi.nim CC: ../src/hts/bgzf/bgzi.nim CC: ../src/hts/stats.nim CC: ../src/hts.nim CC: bgzftest.nim CC: faitest.nim CC: auxtest.nim CC: vcftest.nim CC: bamtest.nim CC: statstests.nim CC: vcfiso.nim CC: ../src/hts/files.nim CC: test_files.nim CC: all.nim Hint: [Link] Hint: gc: refc; opt: none (DEBUG BUILD, `-d:release` generates faster code) 84578 lines; 12.483s; 95.066MiB peakmem; proj: /build/reproducible-path/nim-hts-0.3.19+ds/tests/all.nim; out: /build/reproducible-path/nim-hts-0.3.19+ds/tests/all [SuccessX] tests/all [Suite] flag test-suite [OK] test flags [Suite] flag cigar-suite [OK] test op [OK] new cigar [Suite] flag hts-suite [OK] test hts [Suite] bgzf-suite /build/reproducible-path/nim-hts-0.3.19+ds/tests/bgzftest.nim(8) bgzftest /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bgzf.nim(21) write_line /usr/lib/nim/lib/system/fatal.nim(54) sysFatal Unhandled exception: value out of range: 214748364805 notin -2147483648 .. 2147483647 [RangeDefect] [FAILED] test-write /build/reproducible-path/nim-hts-0.3.19+ds/tests/bgzftest.nim(24, 25): Check failed: b.read_line(p) >= 0 b.read_line(p) was -1 /build/reproducible-path/nim-hts-0.3.19+ds/tests/bgzftest.nim(25, 18): Check failed: $kstr.s == "a\t1\t2" $kstr.s was /build/reproducible-path/nim-hts-0.3.19+ds/tests/bgzftest.nim(26, 25): Check failed: b.read_line(p) >= 0 b.read_line(p) was -1 /build/reproducible-path/nim-hts-0.3.19+ds/tests/bgzftest.nim(27, 18): Check failed: $kstr.s == "b\t10\t20" $kstr.s was /build/reproducible-path/nim-hts-0.3.19+ds/tests/bgzftest.nim(29, 18): Check failed: $kstr.s == "b\t10\t20" $kstr.s was /build/reproducible-path/nim-hts-0.3.19+ds/tests/bgzftest.nim(30, 24): Check failed: int(b.tell()) > 0 int(b.tell()) was 0 [FAILED] test-read /build/reproducible-path/nim-hts-0.3.19+ds/tests/bgzftest.nim(45, 19): Check failed: nb_lines == 2 nb_lines was 0 [FAILED] bgzf-iterator [E::bgzf_read_block] Failed to read BGZF block data at offset 0 expected 24944 bytes; hread returned 982 [OK] bgzf-iterator-err /build/reproducible-path/nim-hts-0.3.19+ds/tests/bgzftest.nim(59) bgzftest /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bgzf/bgzi.nim(89) write_interval /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bgzf.nim(21) write_line /usr/lib/nim/lib/system/fatal.nim(54) sysFatal Unhandled exception: value out of range: 26056449893335048 notin -2147483648 .. 2147483647 [RangeDefect] [FAILED] write-with-index [E::hts_idx_load3] Could not load local index file 'ti.txt.gz.csi' : No such file or directory /build/reproducible-path/nim-hts-0.3.19+ds/tests/bgzftest.nim(67, 14): Check failed: open(c, "ti.txt.gz") /usr/lib/nim/lib/pure/unittest.nim(681) bgzftest /usr/lib/nim/lib/system/fatal.nim(54) sysFatal Unhandled exception: index out of bounds, the container is empty [IndexDefect] [FAILED] read-new-index [E::hts_idx_load3] Could not load local index file 'ti.txt.gz.csi' : No such file or directory /build/reproducible-path/nim-hts-0.3.19+ds/tests/bgzftest.nim(85) bgzftest /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/bgzf/bgzi.nim(38) open Unhandled exception: hts: error opening index for ti.txt.gz [IOError] [FAILED] csi-iterator [Suite] fai-suite [OK] fai-read [OK] fai chrom_len [OK] fai indexing [OK] issue26 [OK] close [Suite] aux-test [OK] test aux [OK] tag [OK] drop tag [Suite] vcf suite [E::bcf_hdr_read] Input is not detected as bcf or vcf format [OK] empty file rasies [OK] filter /build/reproducible-path/nim-hts-0.3.19+ds/tests/vcftest.nim(65) vcftest /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(430) delete /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(278) bcf_hdr_id2type /usr/lib/nim/lib/system/fatal.nim(54) sysFatal Unhandled exception: value out of range [RangeDefect] [FAILED] test writer [OK] vcf write missing format values /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(544) vcftest /build/reproducible-path/nim-hts-0.3.19+ds/src/hts/vcf.nim(421) bcf_hdr_id2number /usr/lib/nim/lib/system/fatal.nim(54) sysFatal Unhandled exception: value out of range [RangeDefect] [FAILED] iterating over info fields [OK] that adding a new sample and setting values works. [OK] format fields [OK] test empty format [OK] test format setting [OK] add string to header [OK] add info to header [OK] add and set Flag [OK] remove info from header [OK] add format to header [OK] remove format from header [OK] set qual [OK] set id [OK] new from string [Suite] genotypes suite [OK] test alts [OK] unknown alts [OK] contig names [Suite] header record [OK] info test [OK] format test [Suite] vcf alleles [OK] update alleles with low-level setters works [OK] update alleles with high-level setters works [Suite] bug suite [OK] csq reader [OK] re-use same header issue 77 [Suite] speed tests 312078 in .. 19.161652104 seconds [OK] standard format getter [Suite] bam-suite [OK] xam_index [OK] test sa sam [OK] test sa bam [OK] cram writing [OK] set aux [OK] set qname [OK] test from string [Suite] stats suite [OK] test fisher 0.09873714670538818 0.002221433773229274 0.002221433773229274 [OK] binomial [Suite] bugs [OK] vcf/bcf subset alts [Suite] test files [OK] that iteration works [OK] file types [E::hts_open_format] Failed to open file "tests/sadfasdfasdfasdf" : No such file or directory [OK] that bad path gives reasonable error message [OK] readLine make[1]: *** [debian/rules:21: override_dh_auto_test] Error 1 make[1]: Leaving directory '/build/reproducible-path/nim-hts-0.3.19+ds' make: *** [debian/rules:6: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/7924 and its subdirectories