I: pbuilder: network access will be disabled during build I: Current time: Tue Mar 26 14:44:55 +14 2024 I: pbuilder-time-stamp: 1711413895 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libslow5lib_0.7.0+dfsg-2.1.dsc] I: copying [./libslow5lib_0.7.0+dfsg.orig.tar.xz] I: copying [./libslow5lib_0.7.0+dfsg-2.1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Mar 1 12:29:30 2024 gpgv: using RSA key A62D2CFBD50B9B5BF360D54B159EB5C4EFC8774C gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libslow5lib_0.7.0+dfsg-2.1.dsc: no acceptable signature found dpkg-source: info: extracting libslow5lib in libslow5lib-0.7.0+dfsg dpkg-source: info: unpacking libslow5lib_0.7.0+dfsg.orig.tar.xz dpkg-source: info: unpacking libslow5lib_0.7.0+dfsg-2.1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_streamvbyte.patch dpkg-source: info: applying enable_shared_and_static.patch dpkg-source: info: applying fix-baseline.patch dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/22278/tmp/hooks/D01_modify_environment starting debug: Running on cbxi4b. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Mar 26 00:45 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/22278/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/22278/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=f70b7d76e6e340ac98fb32ad32231635 LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=22278 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.W0dVpy4k/pbuilderrc_YkNs --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.W0dVpy4k/b2 --logfile b2/build.log libslow5lib_0.7.0+dfsg-2.1.dsc' SUDO_GID=116 SUDO_UID=112 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:3142/ I: uname -a Linux i-capture-the-hostname 6.1.0-18-armmp #1 SMP Debian 6.1.76-1 (2024-02-01) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 25 16:05 /bin -> usr/bin I: user script /srv/workspace/pbuilder/22278/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), dh-python, python3-all-dev, libstreamvbyte-dev, libzstd-dev, zlib1g-dev, cython3, python3-setuptools, python3-numpy, python3-wheel dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19414 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs (>= 0.106~); however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on libstreamvbyte-dev; however: Package libstreamvbyte-dev is not installed. pbuilder-satisfydepends-dummy depends on libzstd-dev; however: Package libzstd-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-wheel; however: Package python3-wheel is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} cython3{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libblas3{a} libbrotli1{a} libcom-err2t64{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} librhash0{a} librtmp1{a} libssh2-1t64{a} libstreamvbyte-dev{a} libstreamvbyte0{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pkg-resources{a} python3-setuptools{a} python3-wheel{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl libssl3 lynx psmisc publicsuffix wget 0 packages upgraded, 98 newly installed, 0 to remove and 0 not upgraded. Need to get 65.2 MB of archives. After unpacking 252 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf libpython3.11-minimal armhf 3.11.8-3+b2 [804 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf python3.11-minimal armhf 3.11.8-3+b2 [1600 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf python3-minimal armhf 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf tzdata all 2024a-1 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf libreadline8t64 armhf 8.2-4 [145 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf libpython3.11-stdlib armhf 3.11.8-3+b2 [1702 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf python3.11 armhf 3.11.8-3+b2 [597 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf libpython3-stdlib armhf 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian unstable/main armhf python3 armhf 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf libpython3.12-minimal armhf 3.12.2-4+b1 [795 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf python3.12-minimal armhf 3.12.2-4+b1 [1739 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf libproc2-0 armhf 2:4.0.4-4 [55.7 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf procps armhf 2:4.0.4-4 [864 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-3+b1 [1091 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.39.3-10+b1 [82.7 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.7-1+b2 [33.4 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.12.0-3+b1 [1367 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf autoconf all 2.71-3 [332 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf autopoint all 0.21-14 [496 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b2 [599 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf libarchive13t64 armhf 3.7.2-1.1 [304 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.20.1-6 [30.3 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf libcom-err2t64 armhf 1.47.0-2.3+b2 [19.7 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.20.1-6 [75.3 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 41 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.20.1-6 [289 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.20.1-6 [112 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf libnghttp2-14 armhf 1.59.0-1+b1 [62.7 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.6 kB] Get: 45 http://deb.debian.org/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b3 [53.2 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf libssh2-1t64 armhf 1.11.0-4.1+b1 [198 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf libcurl4t64 armhf 8.6.0-4 [384 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf libjsoncpp25 armhf 1.9.5-6+b2 [69.9 kB] Get: 49 http://deb.debian.org/debian unstable/main armhf librhash0 armhf 1.4.3-3+b1 [143 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf libuv1t64 armhf 1.48.0-1.1 [134 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf cmake-data all 3.28.3-1 [2128 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf cmake armhf 3.28.3-1+b2 [5115 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf cython3 armhf 3.0.8-1 [5795 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf d-shlibs all 0.106 [10.9 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.15.2 [87.7 kB] Get: 56 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-7 [517 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 59 http://deb.debian.org/debian unstable/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 60 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 61 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 62 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.191-1 [183 kB] Get: 63 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b1 [106 kB] Get: 64 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 65 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 66 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 67 http://deb.debian.org/debian unstable/main armhf debhelper all 13.15.2 [900 kB] Get: 68 http://deb.debian.org/debian unstable/main armhf python3-lib2to3 all 3.12.2-3 [77.6 kB] Get: 69 http://deb.debian.org/debian unstable/main armhf python3-distutils all 3.12.2-3 [131 kB] Get: 70 http://deb.debian.org/debian unstable/main armhf python3-pkg-resources all 68.1.2-2 [241 kB] Get: 71 http://deb.debian.org/debian unstable/main armhf python3-setuptools all 68.1.2-2 [468 kB] Get: 72 http://deb.debian.org/debian unstable/main armhf dh-python all 6.20240310 [106 kB] Get: 73 http://deb.debian.org/debian unstable/main armhf libblas3 armhf 3.12.0-3 [108 kB] Get: 74 http://deb.debian.org/debian unstable/main armhf libexpat1-dev armhf 2.6.2-1 [140 kB] Get: 75 http://deb.debian.org/debian unstable/main armhf libgfortran5 armhf 14-20240315-1 [264 kB] Get: 76 http://deb.debian.org/debian unstable/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 77 http://deb.debian.org/debian unstable/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 78 http://deb.debian.org/debian unstable/main armhf libjs-sphinxdoc all 7.2.6-6 [150 kB] Get: 79 http://deb.debian.org/debian unstable/main armhf liblapack3 armhf 3.12.0-3 [1803 kB] Get: 80 http://deb.debian.org/debian unstable/main armhf libpython3.11t64 armhf 3.11.8-3+b2 [1673 kB] Get: 81 http://deb.debian.org/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg-3.1 [904 kB] Get: 82 http://deb.debian.org/debian unstable/main armhf libpython3.11-dev armhf 3.11.8-3+b2 [3109 kB] Get: 83 http://deb.debian.org/debian unstable/main armhf libpython3-dev armhf 3.11.8-1 [9560 B] Get: 84 http://deb.debian.org/debian unstable/main armhf libpython3.12-stdlib armhf 3.12.2-4+b1 [1790 kB] Get: 85 http://deb.debian.org/debian unstable/main armhf libpython3.12t64 armhf 3.12.2-4+b1 [1821 kB] Get: 86 http://deb.debian.org/debian unstable/main armhf libpython3.12-dev armhf 3.12.2-4+b1 [3365 kB] Get: 87 http://deb.debian.org/debian unstable/main armhf libpython3-all-dev armhf 3.11.8-1 [1072 B] Get: 88 http://deb.debian.org/debian unstable/main armhf libstreamvbyte0 armhf 0.4.1-4 [5096 B] Get: 89 http://deb.debian.org/debian unstable/main armhf libstreamvbyte-dev armhf 0.4.1-4 [6092 B] Get: 90 http://deb.debian.org/debian unstable/main armhf libzstd-dev armhf 1.5.5+dfsg2-2 [322 kB] Get: 91 http://deb.debian.org/debian unstable/main armhf python3.12 armhf 3.12.2-4+b1 [653 kB] Get: 92 http://deb.debian.org/debian unstable/main armhf python3-all armhf 3.11.8-1 [1056 B] Get: 93 http://deb.debian.org/debian unstable/main armhf python3.11-dev armhf 3.11.8-3+b2 [501 kB] Get: 94 http://deb.debian.org/debian unstable/main armhf python3-dev armhf 3.11.8-1 [26.1 kB] Get: 95 http://deb.debian.org/debian unstable/main armhf python3.12-dev armhf 3.12.2-4+b1 [499 kB] Get: 96 http://deb.debian.org/debian unstable/main armhf python3-all-dev armhf 3.11.8-1 [1072 B] Get: 97 http://deb.debian.org/debian unstable/main armhf python3-numpy armhf 1:1.26.4+ds-6 [4131 kB] Get: 98 http://deb.debian.org/debian unstable/main armhf python3-wheel all 0.43.0-1 [52.5 kB] Fetched 65.2 MB in 6s (10.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19414 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.8-3+b2_armhf.deb ... Unpacking libpython3.11-minimal:armhf (3.11.8-3+b2) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.2-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.8-3+b2_armhf.deb ... Unpacking python3.11-minimal (3.11.8-3+b2) ... Setting up libpython3.11-minimal:armhf (3.11.8-3+b2) ... Setting up libexpat1:armhf (2.6.2-1) ... Setting up python3.11-minimal (3.11.8-3+b2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19732 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_armhf.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-1_all.deb ... Unpacking tzdata (2024a-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../5-libreadline8t64_8.2-4_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:armhf. Preparing to unpack .../6-libpython3.11-stdlib_3.11.8-3+b2_armhf.deb ... Unpacking libpython3.11-stdlib:armhf (3.11.8-3+b2) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.8-3+b2_armhf.deb ... Unpacking python3.11 (3.11.8-3+b2) ... 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Setting up libpsl5t64:armhf (0.21.2-1.1) ... Setting up libnghttp2-14:armhf (1.59.0-1+b1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:armhf (0.191-1) ... Setting up libkrb5support0:armhf (1.20.1-6) ... Setting up tzdata (2024a-1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Mar 26 00:47:13 UTC 2024. Universal Time is now: Tue Mar 26 00:47:13 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libcom-err2t64:armhf (1.47.0-2.3+b2) ... Setting up libexpat1-dev:armhf (2.6.2-1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b3) ... Setting up libstreamvbyte-dev:armhf (0.4.1-4) ... Setting up libproc2-0:armhf (2:4.0.4-4) ... Setting up autopoint (0.21-14) ... Setting up libjsoncpp25:armhf (1.9.5-6+b2) ... Setting up d-shlibs (0.106) ... Setting up libk5crypto3:armhf (1.20.1-6) ... Setting up libgfortran5:armhf (14-20240315-1) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up librhash0:armhf (1.4.3-3+b1) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up procps (2:4.0.4-4) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up cmake-data (3.28.3-1) ... Setting up libkrb5-3:armhf (1.20.1-6) ... Setting up libssh2-1t64:armhf (1.11.0-4.1+b1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.12-minimal (3.12.2-4+b1) ... Setting up liblapack3:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:armhf (1.20.1-6) ... Setting up libjs-sphinxdoc (7.2.6-6) ... Setting up libreadline8t64:armhf (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up libarchive13t64:armhf (3.7.2-1.1) ... Setting up libpython3.12-stdlib:armhf (3.12.2-4+b1) ... Setting up libcurl4t64:armhf (8.6.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:armhf (3.11.8-3+b2) ... Setting up python3.12 (3.12.2-4+b1) ... Setting up libpython3.11t64:armhf (3.11.8-3+b2) ... Setting up man-db (2.12.0-3+b1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3.12t64:armhf (3.12.2-4+b1) ... Setting up libpython3.11-dev:armhf (3.11.8-3+b2) ... Setting up cmake (3.28.3-1+b2) ... Setting up libpython3-stdlib:armhf (3.11.8-1) ... Setting up python3.11 (3.11.8-3+b2) ... Setting up libpython3-dev:armhf (3.11.8-1) ... Setting up python3.11-dev (3.11.8-3+b2) ... Setting up debhelper (13.15.2) ... Setting up python3 (3.11.8-1) ... Setting up libpython3.12-dev:armhf (3.12.2-4+b1) ... Setting up python3-wheel (0.43.0-1) ... Setting up libpython3-all-dev:armhf (3.11.8-1) ... Setting up python3.12-dev (3.12.2-4+b1) ... Setting up cython3 (3.0.8-1) ... Setting up python3-lib2to3 (3.12.2-3) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.2-3) ... python3.12: can't get files for byte-compilation Setting up python3-setuptools (68.1.2-2) ... Setting up python3-all (3.11.8-1) ... Setting up python3-dev (3.11.8-1) ... Setting up python3-numpy (1:1.26.4+ds-6) ... Setting up dh-python (6.20240310) ... Setting up python3-all-dev (3.11.8-1) ... Processing triggers for libc-bin (2.37-15.1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/22278/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/22278/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/libslow5lib-0.7.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libslow5lib_0.7.0+dfsg-2.1_source.changes dpkg-buildpackage: info: source package libslow5lib dpkg-buildpackage: info: source version 0.7.0+dfsg-2.1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Benjamin Drung dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --with python3 --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --with python3 --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' dh_auto_configure -- \ -DSLOW5_USE_ZSTD="ON" cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DSLOW5_USE_ZSTD=ON .. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (4.2s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf dh_auto_configure --buildsystem=pybuild I: pybuild base:305: dh_auto_configure --buildsystem=cmake --builddirectory=/build/reproducible-path/libslow5lib-0.7.0+dfsg/.pybuild/cpython3_3.12_slow5/build -- -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.12 -DPYTHON_LIBRARY:FILEPATH=/usr/lib/python3.12/config-3.12-arm-linux-gnueabihf/libpython3.12.so -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.12 -DPython_EXECUTABLE=/usr/bin/python3.12 -DPython_LIBRARY=/usr/lib/python3.12/config-3.12-arm-linux-gnueabihf/libpython3.12.so -DPython_INCLUDE_DIR=/usr/include/python3.12 -DPython3_EXECUTABLE=/usr/bin/python3.12 -DPython3_LIBRARY=/usr/lib/python3.12/config-3.12-arm-linux-gnueabihf/libpython3.12.so -DPython3_INCLUDE_DIR=/usr/include/python3.12 cd .pybuild/cpython3_3.12_slow5/build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.12 -DPYTHON_LIBRARY:FILEPATH=/usr/lib/python3.12/config-3.12-arm-linux-gnueabihf/libpython3.12.so -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.12 -DPython_EXECUTABLE=/usr/bin/python3.12 -DPython_LIBRARY=/usr/lib/python3.12/config-3.12-arm-linux-gnueabihf/libpython3.12.so -DPython_INCLUDE_DIR=/usr/include/python3.12 -DPython3_EXECUTABLE=/usr/bin/python3.12 -DPython3_LIBRARY=/usr/lib/python3.12/config-3.12-arm-linux-gnueabihf/libpython3.12.so -DPython3_INCLUDE_DIR=/usr/include/python3.12 ../../.. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (3.7s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED PYTHON_EXECUTABLE PYTHON_INCLUDE_DIR PYTHON_LIBRARY Python3_EXECUTABLE Python3_INCLUDE_DIR Python3_LIBRARY Python_EXECUTABLE Python_INCLUDE_DIR Python_LIBRARY -- Build files have been written to: /build/reproducible-path/libslow5lib-0.7.0+dfsg/.pybuild/cpython3_3.12_slow5/build I: pybuild base:305: dh_auto_configure --buildsystem=cmake --builddirectory=/build/reproducible-path/libslow5lib-0.7.0+dfsg/.pybuild/cpython3_3.11_slow5/build -- -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.11 -DPYTHON_LIBRARY:FILEPATH=/usr/lib/python3.11/config-3.11-arm-linux-gnueabihf/libpython3.11.so -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.11 -DPython_EXECUTABLE=/usr/bin/python3.11 -DPython_LIBRARY=/usr/lib/python3.11/config-3.11-arm-linux-gnueabihf/libpython3.11.so -DPython_INCLUDE_DIR=/usr/include/python3.11 -DPython3_EXECUTABLE=/usr/bin/python3.11 -DPython3_LIBRARY=/usr/lib/python3.11/config-3.11-arm-linux-gnueabihf/libpython3.11.so -DPython3_INCLUDE_DIR=/usr/include/python3.11 cd .pybuild/cpython3_3.11_slow5/build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.11 -DPYTHON_LIBRARY:FILEPATH=/usr/lib/python3.11/config-3.11-arm-linux-gnueabihf/libpython3.11.so -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.11 -DPython_EXECUTABLE=/usr/bin/python3.11 -DPython_LIBRARY=/usr/lib/python3.11/config-3.11-arm-linux-gnueabihf/libpython3.11.so -DPython_INCLUDE_DIR=/usr/include/python3.11 -DPython3_EXECUTABLE=/usr/bin/python3.11 -DPython3_LIBRARY=/usr/lib/python3.11/config-3.11-arm-linux-gnueabihf/libpython3.11.so -DPython3_INCLUDE_DIR=/usr/include/python3.11 ../../.. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (3.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED PYTHON_EXECUTABLE PYTHON_INCLUDE_DIR PYTHON_LIBRARY Python3_EXECUTABLE Python3_INCLUDE_DIR Python3_LIBRARY Python_EXECUTABLE Python_INCLUDE_DIR Python_LIBRARY -- Build files have been written to: /build/reproducible-path/libslow5lib-0.7.0+dfsg/.pybuild/cpython3_3.11_slow5/build make[1]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' dh_auto_build cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/libslow5lib-0.7.0+dfsg -B/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf' make -f CMakeFiles/slow5_static.dir/build.make CMakeFiles/slow5_static.dir/depend make -f CMakeFiles/slow5.dir/build.make CMakeFiles/slow5.dir/depend make[4]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libslow5lib-0.7.0+dfsg /build/reproducible-path/libslow5lib-0.7.0+dfsg /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/slow5_static.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libslow5lib-0.7.0+dfsg /build/reproducible-path/libslow5lib-0.7.0+dfsg /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/slow5.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf' make -f CMakeFiles/slow5_static.dir/build.make CMakeFiles/slow5_static.dir/build make[4]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf' make[4]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf' make -f CMakeFiles/slow5.dir/build.make CMakeFiles/slow5.dir/build make[4]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf' [ 10%] Building C object CMakeFiles/slow5_static.dir/src/slow5_idx.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_idx.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_idx.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_idx.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_idx.c [ 20%] Building C object CMakeFiles/slow5_static.dir/src/slow5_misc.c.o [ 30%] Building C object CMakeFiles/slow5_static.dir/src/slow5.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5.c.o -MF CMakeFiles/slow5_static.dir/src/slow5.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c /usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_misc.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_misc.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_misc.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_misc.c [ 40%] Building C object CMakeFiles/slow5.dir/src/slow5.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5.c.o -MF CMakeFiles/slow5.dir/src/slow5.c.o.d -o CMakeFiles/slow5.dir/src/slow5.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c In file included from /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5.h:55, from /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c:40: /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c: In function ‘slow5_get_mem’: /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:80:28: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 5 has type ‘off_t’ {aka ‘long long int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c:2461:9: note: in expansion of macro ‘SLOW5_ERROR’ 2461 | SLOW5_ERROR("Failed to pread '%zu' bytes at offset '%zu' from slow5 file '%s'.", | ^~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c: In function ‘slow5_rec_aux_parse’: /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:80:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c:3083:17: note: in expansion of macro ‘SLOW5_ERROR’ 3083 | SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size); | ^~~~~~~~~~~ In file included from /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5.h:55, from /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c:40: /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c: In function ‘slow5_get_mem’: /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:80:28: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 5 has type ‘off_t’ {aka ‘long long int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c:2461:9: note: in expansion of macro ‘SLOW5_ERROR’ 2461 | SLOW5_ERROR("Failed to pread '%zu' bytes at offset '%zu' from slow5 file '%s'.", | ^~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c: In function ‘slow5_rec_aux_parse’: /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:80:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c:3083:17: note: in expansion of macro ‘SLOW5_ERROR’ 3083 | SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size); | ^~~~~~~~~~~ [ 50%] Building C object CMakeFiles/slow5_static.dir/src/slow5_press.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_press.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_press.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_press.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_press.c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_press.c: In function ‘ptr_depress_svb_zd’: /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_press.c:1125:31: warning: passing argument 2 of ‘zigzag_delta_decode’ from incompatible pointer type [-Wincompatible-pointer-types] 1125 | zigzag_delta_decode(diff, orig, length, 0); | ^~~~ | | | int16_t * {aka short int *} In file included from /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_press.c:12: /usr/include/streamvbyte_zigzag.h:36:57: note: expected ‘int32_t *’ {aka ‘int *’} but argument is of type ‘int16_t *’ {aka ‘short int *’} 36 | void zigzag_delta_decode(const uint32_t * in, int32_t * out, size_t N, int32_t prev); | ~~~~~~~~~~^~~ [ 60%] Building C object CMakeFiles/slow5.dir/src/slow5_idx.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_idx.c.o -MF CMakeFiles/slow5.dir/src/slow5_idx.c.o.d -o CMakeFiles/slow5.dir/src/slow5_idx.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_idx.c [ 70%] Building C object CMakeFiles/slow5.dir/src/slow5_misc.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_misc.c.o -MF CMakeFiles/slow5.dir/src/slow5_misc.c.o.d -o CMakeFiles/slow5.dir/src/slow5_misc.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_misc.c [ 80%] Building C object CMakeFiles/slow5.dir/src/slow5_press.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_press.c.o -MF CMakeFiles/slow5.dir/src/slow5_press.c.o.d -o CMakeFiles/slow5.dir/src/slow5_press.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_press.c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_press.c: In function ‘ptr_depress_svb_zd’: /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_press.c:1125:31: warning: passing argument 2 of ‘zigzag_delta_decode’ from incompatible pointer type [-Wincompatible-pointer-types] 1125 | zigzag_delta_decode(diff, orig, length, 0); | ^~~~ | | | int16_t * {aka short int *} In file included from /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_press.c:12: /usr/include/streamvbyte_zigzag.h:36:57: note: expected ‘int32_t *’ {aka ‘int *’} but argument is of type ‘int16_t *’ {aka ‘short int *’} 36 | void zigzag_delta_decode(const uint32_t * in, int32_t * out, size_t N, int32_t prev); | ~~~~~~~~~~^~~ [ 90%] Linking C static library libslow5_static.a /usr/bin/cmake -P CMakeFiles/slow5_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/slow5_static.dir/link.txt --verbose=1 [100%] Linking C shared library libslow5.so /usr/bin/ar qc libslow5_static.a CMakeFiles/slow5_static.dir/src/slow5.c.o CMakeFiles/slow5_static.dir/src/slow5_idx.c.o CMakeFiles/slow5_static.dir/src/slow5_misc.c.o CMakeFiles/slow5_static.dir/src/slow5_press.c.o /usr/bin/cmake -E cmake_link_script CMakeFiles/slow5.dir/link.txt --verbose=1 /usr/bin/ranlib libslow5_static.a /usr/bin/cc -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libslow5.so.0 -o libslow5.so.0 CMakeFiles/slow5.dir/src/slow5.c.o CMakeFiles/slow5.dir/src/slow5_idx.c.o CMakeFiles/slow5.dir/src/slow5_misc.c.o CMakeFiles/slow5.dir/src/slow5_press.c.o -lzstd make[4]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf' [100%] Built target slow5_static /usr/bin/cmake -E cmake_symlink_library libslow5.so.0 libslow5.so.0 libslow5.so make[4]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf' [100%] Built target slow5 make[3]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf' for py in `py3versions -s`; do \ $py setup.py build; \ done /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running build running build_ext Compiling python/pyslow5.pyx because it changed. [1/1] Cythonizing python/pyslow5.pyx building 'pyslow5' extension creating build creating build/temp.linux-armv7l-cpython-312 creating build/temp.linux-armv7l-cpython-312/python creating build/temp.linux-armv7l-cpython-312/src arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c python/pyslow5.c -o build/temp.linux-armv7l-cpython-312/python/pyslow5.o -g -Wall -O2 -std=c99 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from python/pyslow5.c:1259: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ python/pyslow5.c: In function ‘__pyx_pf_7pyslow5_4Open_62write_record_batch’: python/pyslow5.c:46397:14: warning: ‘__pyx_v_ret’ may be used uninitialized [-Wmaybe-uninitialized] 46397 | if (__pyx_t_5) { | ^ python/pyslow5.c:42902:8: note: ‘__pyx_v_ret’ was declared here 42902 | long __pyx_v_ret; | ^~~~~~~~~~~ python/pyslow5.c: In function ‘__pyx_pf_7pyslow5_4Open_60write_record’: python/pyslow5.c:42291:10: warning: ‘__pyx_v_ret’ may be used uninitialized [-Wmaybe-uninitialized] 42291 | if (__pyx_t_7) { | ^ python/pyslow5.c:40047:8: note: ‘__pyx_v_ret’ was declared here 40047 | long __pyx_v_ret; | ^~~~~~~~~~~ arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c python/slow5threads.c -o build/temp.linux-armv7l-cpython-312/python/slow5threads.o -g -Wall -O2 -std=c99 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/slow5.c -o build/temp.linux-armv7l-cpython-312/src/slow5.o -g -Wall -O2 -std=c99 src/slow5.c: In function ‘slow5_init’: src/slow5.c:191:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 191 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { | ^~ src/slow5.c: In function ‘slow5_init_empty’: src/slow5.c:265:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 265 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { | ^~ src/slow5.c: In function ‘slow5_get_mem’: src/slow5.c:2460:49: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2460 | if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) { | ^~ In file included from include/slow5/slow5.h:55, from src/slow5.c:40: include/slow5/slow5_error.h:80:28: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 5 has type ‘off_t’ {aka ‘long long int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ src/slow5.c:2461:9: note: in expansion of macro ‘SLOW5_ERROR’ 2461 | SLOW5_ERROR("Failed to pread '%zu' bytes at offset '%zu' from slow5 file '%s'.", | ^~~~~~~~~~~ src/slow5.c: In function ‘slow5_rec_aux_parse’: include/slow5/slow5_error.h:80:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ src/slow5.c:3083:17: note: in expansion of macro ‘SLOW5_ERROR’ 3083 | SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size); | ^~~~~~~~~~~ arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/slow5_idx.c -o build/temp.linux-armv7l-cpython-312/src/slow5_idx.o -g -Wall -O2 -std=c99 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/slow5_misc.c -o build/temp.linux-armv7l-cpython-312/src/slow5_misc.o -g -Wall -O2 -std=c99 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/slow5_press.c -o build/temp.linux-armv7l-cpython-312/src/slow5_press.o -g -Wall -O2 -std=c99 src/slow5_press.c: In function ‘slow5_fwrite_compress’: src/slow5_press.c:558:27: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 558 | if (bytes != size * nmemb || ferror(fp)) { | ^~ src/slow5_press.c:559:31: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 559 | if (bytes != size * nmemb) { | ^~ src/slow5_press.c: In function ‘slow5_pread_depress_solo’: src/slow5_press.c:686:47: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 686 | if ((ret = pread(fd, raw, count, offset)) != count) { | ^~ src/slow5_press.c: In function ‘ptr_depress_svb_zd’: src/slow5_press.c:1125:31: warning: passing argument 2 of ‘zigzag_delta_decode’ from incompatible pointer type [-Wincompatible-pointer-types] 1125 | zigzag_delta_decode(diff, orig, length, 0); | ^~~~ | | | int16_t * {aka short int *} In file included from src/slow5_press.c:12: /usr/include/streamvbyte_zigzag.h:36:57: note: expected ‘int32_t *’ {aka ‘int *’} but argument is of type ‘int16_t *’ {aka ‘short int *’} 36 | void zigzag_delta_decode(const uint32_t * in, int32_t * out, size_t N, int32_t prev); | ~~~~~~~~~~^~~ creating build/lib.linux-armv7l-cpython-312 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/python/pyslow5.o build/temp.linux-armv7l-cpython-312/python/slow5threads.o build/temp.linux-armv7l-cpython-312/src/slow5.o build/temp.linux-armv7l-cpython-312/src/slow5_idx.o build/temp.linux-armv7l-cpython-312/src/slow5_misc.o build/temp.linux-armv7l-cpython-312/src/slow5_press.o -L. -L/usr/lib/arm-linux-gnueabihf -lm -lz -lstreamvbyte -o build/lib.linux-armv7l-cpython-312/pyslow5.cpython-312-arm-linux-gnueabihf.so /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running build running build_ext building 'pyslow5' extension creating build/temp.linux-armv7l-cpython-311 creating build/temp.linux-armv7l-cpython-311/python creating build/temp.linux-armv7l-cpython-311/src arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c python/pyslow5.c -o build/temp.linux-armv7l-cpython-311/python/pyslow5.o -g -Wall -O2 -std=c99 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from python/pyslow5.c:1259: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ python/pyslow5.c: In function ‘__pyx_pf_7pyslow5_4Open_60write_record’: python/pyslow5.c:42291:10: warning: ‘__pyx_v_ret’ may be used uninitialized [-Wmaybe-uninitialized] 42291 | if (__pyx_t_7) { | ^ python/pyslow5.c:40047:8: note: ‘__pyx_v_ret’ was declared here 40047 | long __pyx_v_ret; | ^~~~~~~~~~~ python/pyslow5.c: In function ‘__pyx_pf_7pyslow5_4Open_62write_record_batch’: python/pyslow5.c:46397:14: warning: ‘__pyx_v_ret’ may be used uninitialized [-Wmaybe-uninitialized] 46397 | if (__pyx_t_5) { | ^ python/pyslow5.c:42902:8: note: ‘__pyx_v_ret’ was declared here 42902 | long __pyx_v_ret; | ^~~~~~~~~~~ arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c python/slow5threads.c -o build/temp.linux-armv7l-cpython-311/python/slow5threads.o -g -Wall -O2 -std=c99 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/slow5.c -o build/temp.linux-armv7l-cpython-311/src/slow5.o -g -Wall -O2 -std=c99 src/slow5.c: In function ‘slow5_init’: src/slow5.c:191:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 191 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { | ^~ src/slow5.c: In function ‘slow5_init_empty’: src/slow5.c:265:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 265 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { | ^~ src/slow5.c: In function ‘slow5_get_mem’: src/slow5.c:2460:49: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2460 | if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) { | ^~ In file included from include/slow5/slow5.h:55, from src/slow5.c:40: include/slow5/slow5_error.h:80:28: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 5 has type ‘off_t’ {aka ‘long long int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ src/slow5.c:2461:9: note: in expansion of macro ‘SLOW5_ERROR’ 2461 | SLOW5_ERROR("Failed to pread '%zu' bytes at offset '%zu' from slow5 file '%s'.", | ^~~~~~~~~~~ src/slow5.c: In function ‘slow5_rec_aux_parse’: include/slow5/slow5_error.h:80:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ src/slow5.c:3083:17: note: in expansion of macro ‘SLOW5_ERROR’ 3083 | SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size); | ^~~~~~~~~~~ arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/slow5_idx.c -o build/temp.linux-armv7l-cpython-311/src/slow5_idx.o -g -Wall -O2 -std=c99 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/slow5_misc.c -o build/temp.linux-armv7l-cpython-311/src/slow5_misc.o -g -Wall -O2 -std=c99 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c src/slow5_press.c -o build/temp.linux-armv7l-cpython-311/src/slow5_press.o -g -Wall -O2 -std=c99 src/slow5_press.c: In function ‘slow5_fwrite_compress’: src/slow5_press.c:558:27: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 558 | if (bytes != size * nmemb || ferror(fp)) { | ^~ src/slow5_press.c:559:31: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 559 | if (bytes != size * nmemb) { | ^~ src/slow5_press.c: In function ‘slow5_pread_depress_solo’: src/slow5_press.c:686:47: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 686 | if ((ret = pread(fd, raw, count, offset)) != count) { | ^~ src/slow5_press.c: In function ‘ptr_depress_svb_zd’: src/slow5_press.c:1125:31: warning: passing argument 2 of ‘zigzag_delta_decode’ from incompatible pointer type [-Wincompatible-pointer-types] 1125 | zigzag_delta_decode(diff, orig, length, 0); | ^~~~ | | | int16_t * {aka short int *} In file included from src/slow5_press.c:12: /usr/include/streamvbyte_zigzag.h:36:57: note: expected ‘int32_t *’ {aka ‘int *’} but argument is of type ‘int16_t *’ {aka ‘short int *’} 36 | void zigzag_delta_decode(const uint32_t * in, int32_t * out, size_t N, int32_t prev); | ~~~~~~~~~~^~~ creating build/lib.linux-armv7l-cpython-311 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/python/pyslow5.o build/temp.linux-armv7l-cpython-311/python/slow5threads.o build/temp.linux-armv7l-cpython-311/src/slow5.o build/temp.linux-armv7l-cpython-311/src/slow5_idx.o build/temp.linux-armv7l-cpython-311/src/slow5_misc.o build/temp.linux-armv7l-cpython-311/src/slow5_press.o -L. -L/usr/lib/arm-linux-gnueabihf -lm -lz -lstreamvbyte -o build/lib.linux-armv7l-cpython-311/pyslow5.cpython-311-arm-linux-gnueabihf.so make[1]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' mkdir -p lib cp -a obj-arm-linux-gnueabihf/libslow5_static.a lib/libslow5.a /usr/bin/make -C test zstd=1 make[2]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/test' mkdir bin cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ endian_test.c -o bin/endian_test -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_helpers.c -o bin/unit_test_helpers -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_press.c -o bin/unit_test_press -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_ascii.c -o bin/unit_test_ascii -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_binary.c -o bin/unit_test_binary -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ convert_slow5_test.c -o bin/convert_slow5_test -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_two_rg.c -o bin/unit_test_two_rg -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_lossless.c -o bin/unit_test_lossless -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_empty.c -o bin/unit_test_empty -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_enum.c -o bin/unit_test_enum -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd make[2]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/test' for pys in `py3versions -s`; do \ echo $pys; \ pydir=`$pys debian/get-pyver-dir.py`; \ echo $pydir; X=0; \ PYTHONPATH=`pwd`/build/$pydir $pys -m unittest -v python/test.py || X=$?; \ if [ "" != 0 ]; then exit $X; fi; \ done python3.12 lib.linux-armv7l-cpython-312 test_nonExistant_aux (python.test.TestAUX.test_nonExistant_aux) ... [slow5_idx_init::INFO] Index file not found. Creating an index at 'examples/example2.slow5.idx'. 26-Mar-24 15:10:20 - [WARNING]: get_read unknown aux name: noExistTest ok test_read_id (python.test.TestAUX.test_read_id) ... 26-Mar-24 15:10:20 - [WARNING]: get_read unknown aux name: noExistTest ok test_read_number (python.test.TestAUX.test_read_number) ... 26-Mar-24 15:10:20 - [WARNING]: get_read unknown aux name: noExistTest ok test_start_mux (python.test.TestAUX.test_start_mux) ... 26-Mar-24 15:10:20 - [WARNING]: get_read unknown aux name: noExistTest ok test_get_aux_names (python.test.TestAuxAll.test_get_aux_names) ... ok test_get_aux_types (python.test.TestAuxAll.test_get_aux_types) ... ok test_get_read_all_aux (python.test.TestAuxAll.test_get_read_all_aux) ... ok test_seq_reads_pA_aux_all (python.test.TestAuxAll.test_seq_reads_pA_aux_all) ... ok test_class_methods (python.test.TestBase.test_class_methods) ... [slow5_idx_init::INFO] Index file not found. Creating an index at 'examples/example.slow5.idx'. ok test_digitisation (python.test.TestBase.test_digitisation) ... ok test_len_raw_signal (python.test.TestBase.test_len_raw_signal) ... ok test_offset (python.test.TestBase.test_offset) ... ok test_pylen_signal (python.test.TestBase.test_pylen_signal) ... ok test_range (python.test.TestBase.test_range) ... ok test_read_group (python.test.TestBase.test_read_group) ... ok test_read_id (python.test.TestBase.test_read_id) ... ok test_read_type (python.test.TestBase.test_read_type) ... ok test_sampling_rate (python.test.TestBase.test_sampling_rate) ... ok test_signal (python.test.TestBase.test_signal) ... ok test_get_all_headers (python.test.TestHeaders.test_get_all_headers) ... ok test_get_header_names (python.test.TestHeaders.test_get_header_names) ... ok test_digitisation (python.test.TestRandomAccess.test_digitisation) ... ok test_len_raw_signal (python.test.TestRandomAccess.test_len_raw_signal) ... ok test_offset (python.test.TestRandomAccess.test_offset) ... ok test_pylen_signal (python.test.TestRandomAccess.test_pylen_signal) ... ok test_range (python.test.TestRandomAccess.test_range) ... ok test_read_group (python.test.TestRandomAccess.test_read_group) ... ok test_read_id (python.test.TestRandomAccess.test_read_id) ... ok test_sampling_rate (python.test.TestRandomAccess.test_sampling_rate) ... ok test_signal (python.test.TestRandomAccess.test_signal) ... ok test_seq_reads (python.test.TestSequentialRead.test_seq_reads) ... ok test_get_empty_header (python.test.TestWrite.test_get_empty_header) ... ok test_get_empty_record (python.test.TestWrite.test_get_empty_record) ... ok test_write_header (python.test.TestWrite.test_write_header) ... ok test_write_records (python.test.TestWrite.test_write_records) ... ok test_get_empty_aux (python.test.TestWriteAux.test_get_empty_aux) ... ok test_write_records_aux (python.test.TestWriteAux.test_write_records_aux) ... ok test_write_matches_read (python.test.TestWriteData.test_write_matches_read) ... [slow5_idx_init::INFO] Index file not found. Creating an index at 'examples/example_write.slow5.idx'. ok test_base_reads (python.test.TestYieldRead.test_base_reads) ... ok test_reads_with_no_exist (python.test.TestYieldRead.test_reads_with_no_exist) ... [slow5_idx_get::ERROR] Read ID 'null_read' was not found. At src/slow5_idx.c:441 ok test_seq_reads_multi (python.test.testMultiThreading.test_seq_reads_multi) ... ok test_get_reads_multi (python.test.testMultiThreadingRandom.test_get_reads_multi) ... ok ---------------------------------------------------------------------- Ran 42 tests in 4.221s OK r0 r1 r2 r3 r4 r5 0a238451-b9ed-446d-a152-badd074006c4 0d624d4b-671f-40b8-9798-84f2ccc4d7fc r0 r1 r2 r3 r4 r5 0a238451-b9ed-446d-a152-badd074006c4 0d624d4b-671f-40b8-9798-84f2ccc4d7fc make[1]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/reproducible-path/libslow5lib-0.7.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/libslow5lib-0.7.0+dfsg -B/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/libslow5lib-0.7.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libslow5.so.0 -- Installing: /build/reproducible-path/libslow5lib-0.7.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libslow5.so -- Up-to-date: /build/reproducible-path/libslow5lib-0.7.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libslow5.so.0 -- Up-to-date: /build/reproducible-path/libslow5lib-0.7.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libslow5.so -- Installing: /build/reproducible-path/libslow5lib-0.7.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libslow5_static.a make[1]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-arm-linux-gnueabihf' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' mv debian/tmp/usr/lib/arm-linux-gnueabihf/libslow5_static.a debian/tmp/usr/lib/arm-linux-gnueabihf/libslow5.a d-shlibmove --commit \ --t64 \ --multiarch \ --devunversioned \ --exclude-la \ --movedev include usr \ debian/tmp/usr/lib/arm-linux-gnueabihf/libslow5.so Library package automatic movement utility --> libzstd-dev package exists. set -e install -d -m 755 debian/libslow5-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libslow5-0t64/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libslow5.a debian/libslow5-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libslow5.so debian/libslow5-dev/usr/lib/arm-linux-gnueabihf mv /build/reproducible-path/libslow5lib-0.7.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libslow5.so.0 debian/libslow5-0t64/usr/lib/arm-linux-gnueabihf PKGDEV=libslow5-dev PKGSHL=libslow5-0t64 install -d -m 755 debian/libslow5-dev/usr mv include debian/libslow5-dev/usr dh_install dh_install -plibslow5-dev src/*.h usr/include/slow5/ dh_install -ppython3-slow5 build/lib.*-*/* usr/lib/python3/dist-packages/ make[1]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' dh_installexamples dh_installexamples -ppython3-slow5 python/example.py dh_installexamples -ppython3-slow5 examples/*.slow5 make[1]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' dh_python3 -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: symbol inflateReset used by debian/libslow5-0t64/usr/lib/arm-linux-gnueabihf/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol deflateReset used by debian/libslow5-0t64/usr/lib/arm-linux-gnueabihf/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol zigzag_delta_encode used by debian/libslow5-0t64/usr/lib/arm-linux-gnueabihf/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol streamvbyte_encode used by debian/libslow5-0t64/usr/lib/arm-linux-gnueabihf/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateEnd used by debian/libslow5-0t64/usr/lib/arm-linux-gnueabihf/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflate used by debian/libslow5-0t64/usr/lib/arm-linux-gnueabihf/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol deflate used by debian/libslow5-0t64/usr/lib/arm-linux-gnueabihf/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol zigzag_delta_decode used by debian/libslow5-0t64/usr/lib/arm-linux-gnueabihf/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol deflateEnd used by debian/libslow5-0t64/usr/lib/arm-linux-gnueabihf/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateInit2_ used by debian/libslow5-0t64/usr/lib/arm-linux-gnueabihf/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dpkg-gencontrol: warning: Depends field of package libslow5-0t64: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package libslow5-0t64: substitution variable ${misc:Depends} used, but is not defined dpkg-gencontrol: warning: Provides field of package libslow5-0t64: substitution variable ${t64:Provides} used, but is not defined dpkg-gencontrol: warning: Depends field of package libslow5-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libslow5-dev: substitution variable ${devlibs:Depends} unused, but is defined dpkg-gencontrol: warning: package libslow5-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: Depends field of package python3-slow5: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package python3-slow5: substitution variable ${python3:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package python3-slow5: substitution variable ${misc:Depends} used, but is not defined dpkg-gencontrol: warning: package libslow5-0t64: substitution variable ${python3:Depends} unused, but is defined dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'libslow5-0t64' in '../libslow5-0t64_0.7.0+dfsg-2.1_armhf.deb'. dpkg-deb: building package 'libslow5-dev' in '../libslow5-dev_0.7.0+dfsg-2.1_armhf.deb'. dpkg-deb: building package 'python3-slow5-dbgsym' in '../python3-slow5-dbgsym_0.7.0+dfsg-2.1_armhf.deb'. dpkg-deb: building package 'libslow5-0t64-dbgsym' in '../libslow5-0t64-dbgsym_0.7.0+dfsg-2.1_armhf.deb'. dpkg-deb: building package 'python3-slow5' in '../python3-slow5_0.7.0+dfsg-2.1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../libslow5lib_0.7.0+dfsg-2.1_armhf.buildinfo dpkg-genchanges --build=binary -O../libslow5lib_0.7.0+dfsg-2.1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/22278/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/22278/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/22278 and its subdirectories I: Current time: Tue Mar 26 15:11:41 +14 2024 I: pbuilder-time-stamp: 1711415501