I: pbuilder: network access will be disabled during build I: Current time: Wed Aug 28 23:55:36 +14 2024 I: pbuilder-time-stamp: 1724838936 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libpll_0.3.2-5.dsc] I: copying [./libpll_0.3.2.orig.tar.gz] I: copying [./libpll_0.3.2-5.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Dec 14 15:25:23 2023 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@emlwks999.eu" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libpll_0.3.2-5.dsc: no acceptable signature found dpkg-source: info: extracting libpll in libpll-0.3.2 dpkg-source: info: unpacking libpll_0.3.2.orig.tar.gz dpkg-source: info: unpacking libpll_0.3.2-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 2to3.patch dpkg-source: info: applying fix-parallel-build.patch dpkg-source: info: applying pass_cflags_during_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/27322/tmp/hooks/D01_modify_environment starting debug: Running on virt32b. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Aug 28 09:55 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/27322/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/27322/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=a8aec358040f41019a6bc5f2ad649157 LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=27322 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5RI5N7h9/pbuilderrc_jvvK --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5RI5N7h9/b2 --logfile b2/build.log libpll_0.3.2-5.dsc' SUDO_GID=112 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:3142/ I: uname -a Linux i-capture-the-hostname 6.1.0-23-armmp-lpae #1 SMP Debian 6.1.99-1 (2024-07-15) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/27322/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, bison, flex, autoconf-archive dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19491 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on bison; however: Package bison is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. pbuilder-satisfydepends-dummy depends on autoconf-archive; however: Package autoconf-archive is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} autoconf-archive{a} automake{a} autopoint{a} autotools-dev{a} bison{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} flex{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libfl-dev libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 21.4 MB of archives. After unpacking 80.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf autoconf-archive all 20220903-3 [775 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf flex armhf 2.6.4-8.2+b2 [406 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.2-7 [88.6 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 13 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.12.1-3 [1376 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf autopoint all 0.22.5-2 [723 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf bison armhf 2:3.8.2+dfsg-1+b1 [1142 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf d-shlibs all 0.106 [10.9 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-7 [517 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 26 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.191-2 [183 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-5 [9075 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg-3+b1 [583 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf debhelper all 13.20 [915 kB] Fetched 21.4 MB in 1s (18.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package autoconf-archive. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19491 files and directories currently installed.) Preparing to unpack .../00-autoconf-archive_20220903-3_all.deb ... Unpacking autoconf-archive (20220903-3) ... Selecting previously unselected package m4. Preparing to unpack .../01-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package flex. Preparing to unpack .../02-flex_2.6.4-8.2+b2_armhf.deb ... Unpacking flex (2.6.4-8.2+b2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-3_armhf.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.22.5-2_armhf.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../08-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-5_armhf.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.40.2-7_armhf.deb ... Unpacking bsdextrautils (2.40.2-7) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../11-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.12.1-3_armhf.deb ... Unpacking man-db (2.12.1-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package bison. Preparing to unpack .../17-bison_2%3a3.8.2+dfsg-1+b1_armhf.deb ... Unpacking bison (2:3.8.2+dfsg-1+b1) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../18-d-shlibs_0.106_all.deb ... Unpacking d-shlibs (0.106) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../19-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../20-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../21-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../22-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../23-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../24-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../25-libelf1t64_0.191-2_armhf.deb ... Unpacking libelf1t64:armhf (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../26-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../27-libicu72_72.1-5_armhf.deb ... Unpacking libicu72:armhf (72.1-5) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../28-libxml2_2.12.7+dfsg-3+b1_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg-3+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.22.5-2_armhf.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up libicu72:armhf (72.1-5) ... Setting up bsdextrautils (2.40.2-7) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:armhf (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up autoconf-archive (20220903-3) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:armhf (0.191-2) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up d-shlibs (0.106) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up bison (2:3.8.2+dfsg-1+b1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libxml2:armhf (2.12.7+dfsg-3+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up flex (2.6.4-8.2+b2) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-3) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/27322/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/27322/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/libpll-0.3.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libpll_0.3.2-5_source.changes dpkg-buildpackage: info: source package libpll dpkg-buildpackage: info: source version 0.3.2-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Lance Lin dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf dpkg-source: info: using options from libpll-0.3.2/debian/source/options: --extend-diff-ignore=man/libpll.3 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf aclocal: installing 'm4/libtool.m4' from '/usr/share/aclocal/libtool.m4' aclocal: installing 'm4/ltoptions.m4' from '/usr/share/aclocal/ltoptions.m4' aclocal: installing 'm4/ltsugar.m4' from '/usr/share/aclocal/ltsugar.m4' aclocal: installing 'm4/ltversion.m4' from '/usr/share/aclocal/ltversion.m4' aclocal: installing 'm4/lt~obsolete.m4' from '/usr/share/aclocal/lt~obsolete.m4' libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:18: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:18: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:18: the top level configure.ac:19: warning: AC_PROG_LEX without either yywrap or noyywrap is obsolete ./lib/autoconf/programs.m4:743: _AC_PROG_LEX is expanded from... ./lib/autoconf/programs.m4:736: AC_PROG_LEX is expanded from... configure.ac:19: the top level configure.ac:17: installing './compile' configure.ac:11: installing './config.guess' configure.ac:11: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' src/Makefile.am:3: warning: shell dpkg-buildflags --get CFLAGS: non-POSIX variable name src/Makefile.am:3: (probably a GNU make extension) src/Makefile.am: installing './depcomp' configure.ac: installing './ylwrap' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/libpll-0.3.2' dh_auto_configure -- --disable-sse --disable-avx --disable-avx2 ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --disable-sse --disable-avx --disable-avx2 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for flex... flex checking for lex output file root... lex.yy checking for lex library... none needed checking for library containing yywrap... no checking whether yytext is a pointer... yes checking for bison... bison -y checking for exp in -lm... yes checking for assert.h... yes checking for math.h... yes checking for stdio.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for ctype.h... yes checking for x86intrin.h... no checking for inline... inline checking for size_t... yes checking for uint32_t... yes checking for int64_t... yes checking for uint64_t... yes checking for uint8_t... yes checking for GNU libc compatible malloc... yes checking for working alloca.h... yes checking for alloca... yes checking for GNU libc compatible realloc... yes checking for asprintf... yes checking for memcpy... yes checking for memset... yes checking for posix_memalign... yes checking for ps2pdf... no configure: WARNING: *** ps2pdf is required to build a PDF version of the manual checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating man/Makefile config.status: creating examples/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands libpll 0.3.2 Target: linux-gnueabihf arm Compiler: gcc CFLAGS: -g -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 LIBS: -lm -Wl,-z,relro -Wl,-z,now Continue with 'make' command make[1]: Leaving directory '/build/reproducible-path/libpll-0.3.2' dh_auto_build make -j4 make[1]: Entering directory '/build/reproducible-path/libpll-0.3.2' make all-recursive make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2' Making all in src make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2/src' /bin/sh ../ylwrap parse_rtree.y y.tab.c parse_rtree.c y.tab.h `echo parse_rtree.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output parse_rtree.output -- bison -y -d -p `/usr/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"parse_rtree"` /bin/sh ../ylwrap parse_utree.y y.tab.c parse_utree.c y.tab.h `echo parse_utree.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output parse_utree.output -- bison -y -d -p `/usr/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"parse_utree"` /build/reproducible-path/libpll-0.3.2/src/parse_utree.y:159.1-14: warning: POSIX Yacc does not support %error-verbose [-Wyacc] 159 | %error-verbose | ^~~~~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_utree.y:159.1-14: warning: deprecated directive: '%error-verbose', use '%define parse.error verbose' [-Wdeprecated] 159 | %error-verbose | ^~~~~~~~~~~~~~ | %define parse.error verbose /build/reproducible-path/libpll-0.3.2/src/parse_utree.y:161.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 161 | %destructor { pll_utree_graph_destroy($$,NULL); } subtree | ^~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_utree.y:162.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 162 | %destructor { free($$); } STRING | ^~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_utree.y:163.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 163 | %destructor { free($$); } NUMBER | ^~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_utree.y:164.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 164 | %destructor { free($$); } label | ^~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_rtree.y:102.1-14: warning: POSIX Yacc does not support %error-verbose [-Wyacc] 102 | %error-verbose | ^~~~~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_rtree.y:102.1-14: warning: deprecated directive: '%error-verbose', use '%define parse.error verbose' [-Wdeprecated] 102 | %error-verbose | ^~~~~~~~~~~~~~ | %define parse.error verbose /build/reproducible-path/libpll-0.3.2/src/parse_rtree.y:104.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 104 | %destructor { pll_rtree_graph_destroy($$,NULL); } subtree | ^~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_rtree.y:105.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 105 | %destructor { free($$); } STRING | ^~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_rtree.y:106.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 106 | %destructor { free($$); } NUMBER | ^~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_rtree.y:107.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 107 | %destructor { free($$); } label | ^~~~~~~~~~~ /build/reproducible-path/libpll-0.3.2/src/parse_rtree.y: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] /build/reproducible-path/libpll-0.3.2/src/parse_utree.y: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] updating parse_rtree.h updating parse_utree.h make all-am make[4]: Entering directory '/build/reproducible-path/libpll-0.3.2/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-fasta.lo `test -f 'fasta.c' || echo './'`fasta.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-gamma.lo `test -f 'gamma.c' || echo './'`gamma.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-likelihood.lo `test -f 'likelihood.c' || echo './'`likelihood.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-list.lo `test -f 'list.c' || echo './'`list.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fasta.c -fPIC -DPIC -o .libs/libpll_la-fasta.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c gamma.c -fPIC -DPIC -o .libs/libpll_la-gamma.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c likelihood.c -fPIC -DPIC -o .libs/libpll_la-likelihood.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c list.c -fPIC -DPIC -o .libs/libpll_la-list.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c gamma.c -o libpll_la-gamma.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fasta.c -o libpll_la-fasta.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c list.c -o libpll_la-list.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-maps.lo `test -f 'maps.c' || echo './'`maps.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c likelihood.c -o libpll_la-likelihood.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-models.lo `test -f 'models.c' || echo './'`models.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-pll.lo `test -f 'pll.c' || echo './'`pll.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c maps.c -fPIC -DPIC -o .libs/libpll_la-maps.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c models.c -fPIC -DPIC -o .libs/libpll_la-models.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-output.lo `test -f 'output.c' || echo './'`output.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-utree.lo `test -f 'utree.c' || echo './'`utree.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-derivatives.lo `test -f 'derivatives.c' || echo './'`derivatives.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c derivatives.c -fPIC -DPIC -o .libs/libpll_la-derivatives.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-utree_moves.lo `test -f 'utree_moves.c' || echo './'`utree_moves.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c partials.c -o libpll_la-partials.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 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-fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-core_derivatives.lo `test -f 'core_derivatives.c' || echo './'`core_derivatives.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c compress.c -o libpll_la-compress.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-core_likelihood.lo `test -f 'core_likelihood.c' || echo './'`core_likelihood.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_derivatives.c -o libpll_la-core_derivatives.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_likelihood.c -fPIC -DPIC -o .libs/libpll_la-core_likelihood.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_pmatrix.c -o libpll_la-core_pmatrix.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-parse_utree.lo `test -f 'parse_utree.c' || echo './'`parse_utree.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-parse_rtree.lo `test -f 'parse_rtree.c' || echo './'`parse_rtree.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_utree.c -fPIC -DPIC -o .libs/libpll_la-parse_utree.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_rtree.c -fPIC -DPIC -o .libs/libpll_la-parse_rtree.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_likelihood.c -o libpll_la-core_likelihood.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_partials.c -o libpll_la-core_partials.o >/dev/null 2>&1 /bin/sh ../ylwrap lex_utree.l lex.yy.c lex_utree.c -- flex -P `/usr/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"lex_utree"` -o lex.yy.c /bin/sh ../ylwrap lex_rtree.l lex.yy.c lex_rtree.c -- flex -P `/usr/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"lex_rtree"` -o lex.yy.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-fast_parsimony.lo `test -f 'fast_parsimony.c' || echo './'`fast_parsimony.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_utree.c -o libpll_la-parse_utree.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-stepwise.lo `test -f 'stepwise.c' || echo './'`stepwise.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fast_parsimony.c -fPIC -DPIC -o .libs/libpll_la-fast_parsimony.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c stepwise.c -fPIC -DPIC -o .libs/libpll_la-stepwise.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c stepwise.c -o libpll_la-stepwise.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_rtree.c -o libpll_la-parse_rtree.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fast_parsimony.c -o libpll_la-fast_parsimony.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-random.lo `test -f 'random.c' || echo './'`random.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-phylip.lo `test -f 'phylip.c' || echo './'`phylip.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c random.c -fPIC -DPIC -o .libs/libpll_la-random.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c phylip.c -fPIC -DPIC -o .libs/libpll_la-phylip.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-hardware.lo `test -f 'hardware.c' || echo './'`hardware.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c random.c -o libpll_la-random.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c hardware.c -fPIC -DPIC -o .libs/libpll_la-hardware.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c hardware.c -o libpll_la-hardware.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-lex_utree.lo `test -f 'lex_utree.c' || echo './'`lex_utree.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-lex_rtree.lo `test -f 'lex_rtree.c' || echo './'`lex_rtree.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_utree.c -fPIC -DPIC -o .libs/libpll_la-lex_utree.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c phylip.c -o libpll_la-phylip.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_rtree.c -fPIC -DPIC -o .libs/libpll_la-lex_rtree.o lex_utree.l: In function 'pll_utree_lex': lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 62 | strncpy(mem+(*dstlen),src,srclen); | ^ lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] lex_rtree.l: In function 'pll_rtree_lex': lex_rtree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 62 | strncpy(mem+(*dstlen),src,srclen); | ^ lex_rtree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] lex_rtree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] lex_rtree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] lex_rtree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] lex_rtree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] lex_rtree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] lex_rtree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_utree.c -o libpll_la-lex_utree.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_rtree.c -o libpll_la-lex_rtree.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libpll.la -rpath /usr/lib/arm-linux-gnueabihf libpll_la-fasta.lo libpll_la-gamma.lo libpll_la-likelihood.lo libpll_la-list.lo libpll_la-maps.lo libpll_la-models.lo libpll_la-pll.lo libpll_la-output.lo libpll_la-utree.lo libpll_la-rtree.lo libpll_la-derivatives.lo libpll_la-partials.lo libpll_la-compress.lo libpll_la-utree_moves.lo libpll_la-utree_svg.lo libpll_la-parsimony.lo libpll_la-core_derivatives.lo libpll_la-core_partials.lo libpll_la-core_pmatrix.lo libpll_la-core_likelihood.lo libpll_la-parse_utree.lo libpll_la-parse_rtree.lo libpll_la-lex_utree.lo libpll_la-lex_rtree.lo libpll_la-fast_parsimony.lo libpll_la-stepwise.lo libpll_la-random.lo libpll_la-phylip.lo libpll_la-hardware.lo -lm libtool: link: gcc -shared -fPIC -DPIC .libs/libpll_la-fasta.o .libs/libpll_la-gamma.o .libs/libpll_la-likelihood.o .libs/libpll_la-list.o .libs/libpll_la-maps.o .libs/libpll_la-models.o .libs/libpll_la-pll.o .libs/libpll_la-output.o .libs/libpll_la-utree.o .libs/libpll_la-rtree.o .libs/libpll_la-derivatives.o .libs/libpll_la-partials.o .libs/libpll_la-compress.o .libs/libpll_la-utree_moves.o .libs/libpll_la-utree_svg.o .libs/libpll_la-parsimony.o .libs/libpll_la-core_derivatives.o .libs/libpll_la-core_partials.o .libs/libpll_la-core_pmatrix.o .libs/libpll_la-core_likelihood.o .libs/libpll_la-parse_utree.o .libs/libpll_la-parse_rtree.o .libs/libpll_la-lex_utree.o .libs/libpll_la-lex_rtree.o .libs/libpll_la-fast_parsimony.o .libs/libpll_la-stepwise.o .libs/libpll_la-random.o .libs/libpll_la-phylip.o .libs/libpll_la-hardware.o -lm -g -O2 -fstack-protector-strong -O3 -g -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libpll.so.0 -o .libs/libpll.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libpll.so.0" && ln -s "libpll.so.0.0.0" "libpll.so.0") libtool: link: (cd ".libs" && rm -f "libpll.so" && ln -s "libpll.so.0.0.0" "libpll.so") libtool: link: ar cr .libs/libpll.a libpll_la-fasta.o libpll_la-gamma.o libpll_la-likelihood.o libpll_la-list.o libpll_la-maps.o libpll_la-models.o libpll_la-pll.o libpll_la-output.o libpll_la-utree.o libpll_la-rtree.o libpll_la-derivatives.o libpll_la-partials.o libpll_la-compress.o libpll_la-utree_moves.o libpll_la-utree_svg.o libpll_la-parsimony.o libpll_la-core_derivatives.o libpll_la-core_partials.o libpll_la-core_pmatrix.o libpll_la-core_likelihood.o libpll_la-parse_utree.o libpll_la-parse_rtree.o libpll_la-lex_utree.o libpll_la-lex_rtree.o libpll_la-fast_parsimony.o libpll_la-stepwise.o libpll_la-random.o libpll_la-phylip.o libpll_la-hardware.o libtool: link: ranlib .libs/libpll.a libtool: link: ( cd ".libs" && rm -f "libpll.la" && ln -s "../libpll.la" "libpll.la" ) make[4]: Leaving directory '/build/reproducible-path/libpll-0.3.2/src' make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2/src' Making all in man make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2/man' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2/man' Making all in examples make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2/examples' make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2' make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2' make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2' make[1]: Leaving directory '/build/reproducible-path/libpll-0.3.2' dh_auto_test make -j4 check "TESTSUITEFLAGS=-j4 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libpll-0.3.2' Making check in src make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2/src' make check-am make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2/src' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2/src' make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2/src' Making check in man make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2/man' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2/man' Making check in examples make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2/examples' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2/examples' make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2' make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2' make[1]: Leaving directory '/build/reproducible-path/libpll-0.3.2' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/libpll-0.3.2/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/libpll-0.3.2' Making install in src make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2/src' make install-am make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2/src' make[4]: Entering directory '/build/reproducible-path/libpll-0.3.2/src' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/sh ../libtool --mode=install /usr/bin/install -c libpll.la '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/libpll.so.0.0.0 /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/arm-linux-gnueabihf/libpll.so.0.0.0 libtool: install: (cd /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libpll.so.0.0.0 libpll.so.0 || { rm -f libpll.so.0 && ln -s libpll.so.0.0.0 libpll.so.0; }; }) libtool: install: (cd /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libpll.so.0.0.0 libpll.so || { rm -f libpll.so && ln -s libpll.so.0.0.0 libpll.so; }; }) libtool: install: /usr/bin/install -c .libs/libpll.lai /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/arm-linux-gnueabihf/libpll.la libtool: install: /usr/bin/install -c .libs/libpll.a /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/arm-linux-gnueabihf/libpll.a libtool: install: chmod 644 /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/arm-linux-gnueabihf/libpll.a libtool: install: ranlib /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/arm-linux-gnueabihf/libpll.a libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/include/libpll' /usr/bin/install -c -m 644 pll.h '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/include/libpll' make[4]: Leaving directory '/build/reproducible-path/libpll-0.3.2/src' make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2/src' make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2/src' Making install in man make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2/man' make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2/man' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/man/man3' /usr/bin/install -c -m 644 libpll.3 '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/man/man3' make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2/man' make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2/man' Making install in examples make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2/examples' make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2/examples' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/heterotachy' /usr/bin/install -c -m 644 heterotachy/heterotachy.c heterotachy/Makefile heterotachy/README.md '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/heterotachy' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/lg4' /usr/bin/install -c -m 644 lg4/lg4.c lg4/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/lg4' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/lg4/data' /usr/bin/install -c -m 644 lg4/data/example.fas lg4/data/example.tree '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/lg4/data' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/load-utree' /usr/bin/install -c -m 644 load-utree/load-utree.c load-utree/Makefile load-utree/README.md '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/load-utree' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-fasta-rooted' /usr/bin/install -c -m 644 newick-fasta-rooted/newick-fasta-rooted.c newick-fasta-rooted/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-fasta-rooted' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-fasta-unrooted' /usr/bin/install -c -m 644 newick-fasta-unrooted/newick-fasta-unrooted.c newick-fasta-unrooted/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-fasta-unrooted' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-phylip-unrooted' /usr/bin/install -c -m 644 newick-phylip-unrooted/newick-phylip-unrooted.c newick-phylip-unrooted/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-phylip-unrooted' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newton' /usr/bin/install -c -m 644 newton/newton.c newton/Makefile newton/README.md '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newton' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/parsimony' /usr/bin/install -c -m 644 parsimony/npr-pars.c parsimony/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/parsimony' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/partial-traversal' /usr/bin/install -c -m 644 partial-traversal/partial.c partial-traversal/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/partial-traversal' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/protein-list' /usr/bin/install -c -m 644 protein-list/protein-list.c protein-list/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/protein-list' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/rooted' /usr/bin/install -c -m 644 rooted/rooted.c rooted/Makefile rooted/README.md '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/rooted' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/rooted-tacg' /usr/bin/install -c -m 644 rooted-tacg/rooted-tacg.c rooted-tacg/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/rooted-tacg' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/stepwise' /usr/bin/install -c -m 644 stepwise/stepwise.c stepwise/Makefile '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/stepwise' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/unrooted' /usr/bin/install -c -m 644 unrooted/unrooted.c unrooted/Makefile unrooted/README.md '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/unrooted' make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2/examples' make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2/examples' make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2' make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/libpll-0.3.2' make[2]: Leaving directory '/build/reproducible-path/libpll-0.3.2' make[1]: Leaving directory '/build/reproducible-path/libpll-0.3.2' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libpll-0.3.2' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --override s/ld64-1-dev// \ --override s/ld-kfreebsd-x86-64-1-dev// \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libpll-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libpll0/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libpll.a debian/libpll-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libpll.so debian/libpll-dev/usr/lib/arm-linux-gnueabihf mv /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/arm-linux-gnueabihf/libpll.so.0 debian/libpll0/usr/lib/arm-linux-gnueabihf mv /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/arm-linux-gnueabihf/libpll.so.0.0.0 debian/libpll0/usr/lib/arm-linux-gnueabihf PKGDEV=libpll-dev PKGSHL=libpll0 install -d -m 755 debian/libpll-dev/usr/include mv debian/tmp/usr/include/libpll debian/libpll-dev/usr/include make[1]: Leaving directory '/build/reproducible-path/libpll-0.3.2' dh_installdocs dh_installchangelogs dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/libpll-0.3.2' sed -i 's/conjuction/conjunction/' man/libpll.3 dh_installman make[1]: Leaving directory '/build/reproducible-path/libpll-0.3.2' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms debian/rules override_dh_missing make[1]: Entering directory '/build/reproducible-path/libpll-0.3.2' find debian/tmp -type f \( -name "*.la" -o -name "libpll.3" \) | xargs rm -rf find debian/tmp -name examples | xargs rm -rf find debian/libpll-dev/usr/share/doc/libpll-dev/examples/ -name .gitignore | xargs rm -rf dh_missing make[1]: Leaving directory '/build/reproducible-path/libpll-0.3.2' dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libpll-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'libpll0-dbgsym' in '../libpll0-dbgsym_0.3.2-5_armhf.deb'. dpkg-deb: building package 'libpll0' in '../libpll0_0.3.2-5_armhf.deb'. dpkg-deb: building package 'libpll-dev' in '../libpll-dev_0.3.2-5_armhf.deb'. dpkg-genbuildinfo --build=binary -O../libpll_0.3.2-5_armhf.buildinfo dpkg-genchanges --build=binary -O../libpll_0.3.2-5_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from libpll-0.3.2/debian/source/options: --extend-diff-ignore=man/libpll.3 dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/27322/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/27322/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/27322 and its subdirectories I: Current time: Thu Aug 29 00:00:09 +14 2024 I: pbuilder-time-stamp: 1724839209