I: pbuilder: network access will be disabled during build
I: Current time: Sun Dec 29 01:39:47 +14 2024
I: pbuilder-time-stamp: 1735385987
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [lammps_20240207+dfsg-3.dsc]
I: copying [./lammps_20240207+dfsg.orig.tar.xz]
I: copying [./lammps_20240207+dfsg-3.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./lammps_20240207+dfsg-3.dsc: unsupported subcommand
dpkg-source: info: extracting lammps in lammps-20240207+dfsg
dpkg-source: info: unpacking lammps_20240207+dfsg.orig.tar.xz
dpkg-source: info: unpacking lammps_20240207+dfsg-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 20_set_potentials_path.patch
dpkg-source: info: applying 30_build_docs.patch
dpkg-source: info: applying do-not-install-potentials.patch
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/27840/tmp/hooks/D01_modify_environment starting
debug: Running on virt32c.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Dec 28 11:41 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/27840/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/27840/tmp/hooks/D02_print_environment starting
I: set
BASH=/bin/sh
BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=()
BASH_ARGV=()
BASH_CMDS=()
BASH_LINENO=([0]="12" [1]="0")
BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf")
BASH_VERSION='5.2.37(1)-release'
BUILDDIR=/build/reproducible-path
BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
BUILDUSERNAME=pbuilder2
BUILD_ARCH=armhf
DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 '
DIRSTACK=()
DISTRIBUTION=unstable
EUID=0
FUNCNAME=([0]="Echo" [1]="main")
GROUPS=()
HOME=/root
HOSTNAME=i-capture-the-hostname
HOSTTYPE=arm
HOST_ARCH=armhf
IFS='
'
INVOCATION_ID=028e0c607d3d4a0181b312d71edb4c31
LANG=C
LANGUAGE=it_CH:it
LC_ALL=C
MACHTYPE=arm-unknown-linux-gnueabihf
MAIL=/var/mail/root
OPTERR=1
OPTIND=1
OSTYPE=linux-gnueabihf
PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
PBCURRENTCOMMANDLINEOPERATION=build
PBUILDER_OPERATION=build
PBUILDER_PKGDATADIR=/usr/share/pbuilder
PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
PBUILDER_SYSCONFDIR=/etc
PIPESTATUS=([0]="0")
POSIXLY_CORRECT=y
PPID=27840
PS4='+ '
PWD=/
SHELL=/bin/bash
SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
SHLVL=3
SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ALFpIjOr/pbuilderrc_u898 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ALFpIjOr/b2 --logfile b2/build.log lammps_20240207+dfsg-3.dsc'
SUDO_GID=113
SUDO_UID=107
SUDO_USER=jenkins
TERM=unknown
TZ=/usr/share/zoneinfo/Etc/GMT-14
UID=0
USER=root
_='I: set'
http_proxy=http://10.0.0.15:3142/
I: uname -a
Linux i-capture-the-hostname 6.1.0-28-armmp-lpae #1 SMP Debian 6.1.119-1 (2024-11-22) armv7l GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/27840/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: dpkg-dev (>= 1.22.5), cmake, debhelper-compat (= 13), dh-python, pybuild-plugin-pyproject, python3-setuptools, gfortran | fortran-compiler, libavcodec-dev, libeigen3-dev, libfftw3-dev, libhdf5-mpi-dev, libjpeg-dev, libkim-api-dev, libnetcdf-dev, libsymspg-dev, libvtk9-dev, libvtk9-qt-dev, mpi-default-bin, mpi-default-dev, ocl-icd-opencl-dev | opencl-dev, python3-all-dev, python3-sphinx, voro++-dev, libjs-sphinxdoc, libjs-jquery, libjs-mathjax, libjs-underscore, texlive-latex-recommended, texlive-fonts-recommended, texlive-latex-extra, tex-gyre, doxygen, sphinx-rtd-theme-common, latexmk, htmldoc, python3-sphinx-tabs, python3-sphinxcontrib.jquery, python3-sphinxcontrib.spelling, python3-breathe, python3-venv, git
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19572 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on cmake; however:
Package cmake is not installed.
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-python; however:
Package dh-python is not installed.
pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however:
Package pybuild-plugin-pyproject is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on gfortran | fortran-compiler; however:
Package gfortran is not installed.
Package fortran-compiler is not installed.
pbuilder-satisfydepends-dummy depends on libavcodec-dev; however:
Package libavcodec-dev is not installed.
pbuilder-satisfydepends-dummy depends on libeigen3-dev; however:
Package libeigen3-dev is not installed.
pbuilder-satisfydepends-dummy depends on libfftw3-dev; however:
Package libfftw3-dev is not installed.
pbuilder-satisfydepends-dummy depends on libhdf5-mpi-dev; however:
Package libhdf5-mpi-dev is not installed.
pbuilder-satisfydepends-dummy depends on libjpeg-dev; however:
Package libjpeg-dev is not installed.
pbuilder-satisfydepends-dummy depends on libkim-api-dev; however:
Package libkim-api-dev is not installed.
pbuilder-satisfydepends-dummy depends on libnetcdf-dev; however:
Package libnetcdf-dev is not installed.
pbuilder-satisfydepends-dummy depends on libsymspg-dev; however:
Package libsymspg-dev is not installed.
pbuilder-satisfydepends-dummy depends on libvtk9-dev; however:
Package libvtk9-dev is not installed.
pbuilder-satisfydepends-dummy depends on libvtk9-qt-dev; however:
Package libvtk9-qt-dev is not installed.
pbuilder-satisfydepends-dummy depends on mpi-default-bin; however:
Package mpi-default-bin is not installed.
pbuilder-satisfydepends-dummy depends on mpi-default-dev; however:
Package mpi-default-dev is not installed.
pbuilder-satisfydepends-dummy depends on ocl-icd-opencl-dev | opencl-dev; however:
Package ocl-icd-opencl-dev is not installed.
Package opencl-dev is not installed.
pbuilder-satisfydepends-dummy depends on python3-all-dev; however:
Package python3-all-dev is not installed.
pbuilder-satisfydepends-dummy depends on python3-sphinx; however:
Package python3-sphinx is not installed.
pbuilder-satisfydepends-dummy depends on voro++-dev; however:
Package voro++-dev is not installed.
pbuilder-satisfydepends-dummy depends on libjs-sphinxdoc; however:
Package libjs-sphinxdoc is not installed.
pbuilder-satisfydepends-dummy depends on libjs-jquery; however:
Package libjs-jquery is not installed.
pbuilder-satisfydepends-dummy depends on libjs-mathjax; however:
Package libjs-mathjax is not installed.
pbuilder-satisfydepends-dummy depends on libjs-underscore; however:
Package libjs-underscore is not installed.
pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however:
Package texlive-latex-recommended is not installed.
pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however:
Package texlive-fonts-recommended is not installed.
pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however:
Package texlive-latex-extra is not installed.
pbuilder-satisfydepends-dummy depends on tex-gyre; however:
Package tex-gyre is not installed.
pbuilder-satisfydepends-dummy depends on doxygen; however:
Package doxygen is not installed.
pbuilder-satisfydepends-dummy depends on sphinx-rtd-theme-common; however:
Package sphinx-rtd-theme-common is not installed.
pbuilder-satisfydepends-dummy depends on latexmk; however:
Package latexmk is not installed.
pbuilder-satisfydepends-dummy depends on htmldoc; however:
Package htmldoc is not installed.
pbuilder-satisfydepends-dummy depends on python3-sphinx-tabs; however:
Package python3-sphinx-tabs is not installed.
pbuilder-satisfydepends-dummy depends on python3-sphinxcontrib.jquery; however:
Package python3-sphinxcontrib.jquery is not installed.
pbuilder-satisfydepends-dummy depends on python3-sphinxcontrib.spelling; however:
Package python3-sphinxcontrib.spelling is not installed.
pbuilder-satisfydepends-dummy depends on python3-breathe; however:
Package python3-breathe is not installed.
pbuilder-satisfydepends-dummy depends on python3-venv; however:
Package python3-venv is not installed.
pbuilder-satisfydepends-dummy depends on git; however:
Package git is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
adwaita-icon-theme{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} cfortran{a} cmake{a} cmake-data{a} comerr-dev{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} default-libmysqlclient-dev{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dictionaries-common{a} dirmngr{a} docutils-common{a} doxygen{a} dwz{a} emacsen-common{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-lato{a} fonts-lmodern{a} fonts-mathjax{a} gdal-data{a} gdal-plugins{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-arm-linux-gnueabihf{a} gfortran-arm-linux-gnueabihf{a} git{a} git-man{a} gnupg{a} gnupg-l10n{a} gpg{a} gpg-agent{a} gpgconf{a} gpgsm{a} graphviz{a} groff-base{a} gtk-update-icon-cache{a} hdf5-helpers{a} hicolor-icon-theme{a} htmldoc{a} htmldoc-common{a} hunspell-en-us{a} hwloc-nox{a} icu-devtools{a} intltool-debian{a} iso-codes{a} java-common{a} krb5-multidev{a} latexmk{a} libabsl20230802{a} libaec-dev{a} libaec0{a} libaom3{a} libapache-pom-java{a} libapparmor1{a} libarchive-zip-perl{a} libarchive13t64{a} libarmadillo-dev{a} libarmadillo14{a} libarpack2-dev{a} libarpack2t64{a} libasound2-data{a} libasound2t64{a} libaspell15{a} libassuan9{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libavcodec-dev{a} libavcodec61{a} libavformat-dev{a} libavformat61{a} libavif16{a} libavutil-dev{a} libavutil59{a} libblas-dev{a} libblas3{a} libblosc-dev{a} libblosc1{a} libbluray2{a} libboost-dev{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcairo-gobject2{a} libcairo2{a} libcap2-bin{a} libcdt5{a} libcfitsio-dev{a} libcfitsio10t64{a} libcgraph6{a} libchromaprint1{a} libcjson1{a} libclang-cpp19{a} libclang1-19{a} libcloudproviders0{a} libcodec2-1.2{a} libcolord2{a} libcom-err2{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libcurl3t64-gnutls{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdatrie1{a} libdav1d7{a} libdbus-1-3{a} libdconf1{a} libde265-0{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdouble-conversion-dev{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-radeon1{a} libdrm2{a} libdvdnav4{a} libdvdread8t64{a} libdw1t64{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libeigen3-dev{a} libelf1t64{a} libenchant-2-2{a} libepoxy0{a} liberror-perl{a} libevdev2{a} libevent-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libfltk-images1.3t64{a} libfltk1.3t64{a} libfmt10{a} libfontbox-java{a} libfontconfig-dev{a} libfontconfig1{a} libfontconfig1-dev{a} libfontenc1{a} libfreetype-dev{a} libfreetype6{a} libfreexl-dev{a} libfreexl1{a} libfribidi0{a} libfyba-dev{a} libfyba0t64{a} libgav1-1{a} libgbm1{a} libgcrypt20{a} libgd3{a} libgdal-dev{a} libgdal35{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgeos-c1t64{a} libgeos-dev{a} libgeos3.13.0{a} libgeotiff-dev{a} libgeotiff5{a} libgfortran-14-dev{a} libgfortran5{a} libgif-dev{a} libgif7{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libgl2ps-dev{a} libgl2ps1.4{a} libglapi-mesa{a} libgles-dev{a} libgles1{a} libgles2{a} libglew-dev{a} libglew2.2{a} libglib2.0-0t64{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgme0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgpg-error0{a} libgpgme11t64{a} libgpgmepp6t64{a} libgraphite2-3{a} libgsm1{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libgstreamer-plugins-base1.0-0{a} libgstreamer1.0-0{a} libgtk-3-0t64{a} libgtk-3-common{a} libgts-0.7-5t64{a} libgudev-1.0-0{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libhdf4-0-alt{a} libhdf4-alt-dev{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libhdf5-mpi-dev{a} libhdf5-mpich-310{a} libhdf5-mpich-cpp-310{a} libhdf5-mpich-dev{a} libhdf5-mpich-fortran-310{a} libhdf5-mpich-hl-310{a} libhdf5-mpich-hl-cpp-310{a} libhdf5-mpich-hl-fortran-310{a} libheif-dev{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhunspell-1.7-0{a} libhwloc-dev{a} libhwloc15{a} libhwy1t64{a} libhyphen0{a} libice-dev{a} libice6{a} libicu-dev{a} libicu72{a} libidn2-0{a} libidn2-dev{a} libimagequant0{a} libimath-3-1-29t64{a} libinput-bin{a} libinput10{a} libjbig-dev{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-c-dev{a} libjson-c5{a} libjson-perl{a} libjsoncpp-dev{a} libjsoncpp26{a} libjxl0.10{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkim-api-dev{a} libkim-api2{a} libkml-dev{a} libkmlbase1t64{a} libkmlconvenience1t64{a} libkmldom1t64{a} libkmlengine1t64{a} libkmlregionator1t64{a} libkmlxsd1t64{a} libkpathsea6{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libksba8{a} liblab-gamut1{a} liblapack-dev{a} liblapack3{a} liblcms2-2{a} libldap-2.5-0{a} libldap-dev{a} liblerc-dev{a} liblerc4{a} libllvm19{a} libltdl-dev{a} libltdl7{a} liblz4-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmariadb-dev{a} libmariadb-dev-compat{a} libmariadb3{a} libmbedcrypto16{a} libmd4c0{a} libminizip-dev{a} libminizip1t64{a} libmp3lame0{a} libmpfi0{a} libmpg123-0t64{a} libmpich-dev{a} libmpich12{a} libmtdev1t64{a} libnetcdf-dev{a} libnetcdf19t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnorm1t64{a} libnpth0t64{a} libnsl2{a} libnspr4{a} libnss3{a} libnuma-dev{a} libnuma1{a} libodbc2{a} libodbccr2{a} libodbcinst2{a} libogdi-dev{a} libogdi4.1{a} libogg-dev{a} libogg0{a} libopenexr-3-1-30{a} libopengl-dev{a} libopengl0{a} libopenjp2-7{a} libopenjp2-7-dev{a} libopenmpt0t64{a} libopus0{a} liborc-0.4-0t64{a} libp11-kit-dev{a} libp11-kit0{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libpathplan4{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpcsclite1{a} libpdfbox-java{a} libpgm-5.3-0t64{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpoppler-dev{a} libpoppler-private-dev{a} libpoppler140{a} libpotrace0{a} libpq-dev{a} libpq5{a} libproc2-0{a} libproj-dev{a} libproj25{a} libpsl-dev{a} libpsl5t64{a} libptexenc1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-dev{a} libqhull-r8.0{a} libqhull8.0{a} libqhullcpp8.0{a} libqt5concurrent5t64{a} libqt5core5t64{a} libqt5dbus5t64{a} libqt5designer5{a} libqt5designercomponents5{a} libqt5gui5t64{a} libqt5help5{a} libqt5network5t64{a} libqt5opengl5-dev{a} libqt5opengl5t64{a} libqt5positioning5{a} libqt5printsupport5t64{a} libqt5qml5{a} libqt5qmlmodels5{a} libqt5qmlworkerscript5{a} libqt5quick5{a} libqt5quickparticles5{a} libqt5quickshapes5{a} libqt5quicktest5{a} libqt5quickwidgets5{a} libqt5sensors5{a} libqt5sql5-sqlite{a} libqt5sql5t64{a} libqt5test5t64{a} libqt5webchannel5{a} libqt5webkit5{a} libqt5webkit5-dev{a} libqt5widgets5t64{a} libqt5xml5t64{a} librabbitmq4{a} libraqm0{a} librav1e0.7{a} libreadline8t64{a} librhash1{a} librist4{a} librsvg2-2{a} librtmp-dev{a} librtmp1{a} librttopo-dev{a} librttopo1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv-dev{a} libsharpyuv0{a} libshine3{a} libslurm42t64{a} libsm-dev{a} libsm6{a} libsnappy1v5{a} libsodium23{a} libsoxr0{a} libspatialite-dev{a} libspatialite8t64{a} libspeex1{a} libsqlite3-dev{a} libsrt1.5-gnutls{a} libssh-4{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsuperlu-dev{a} libsuperlu7{a} libsvtav1enc2{a} libswresample-dev{a} libswresample5{a} libswscale-dev{a} libswscale8{a} libsymspg-dev{a} libsymspg2{a} libsynctex2{a} libsystemd-shared{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtbb-dev{a} libtbb12{a} libtbbbind-2-5{a} libtbbmalloc2{a} libtcl8.6{a} libteckit0{a} libtexlua53-5{a} libtext-iconv-perl{a} libthai-data{a} libthai0{a} libtheora-dev{a} libtheora0{a} libtiff-dev{a} libtiff6{a} libtiffxx6{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtwolame0{a} libuchardet0{a} libudfread0{a} libunbound8{a} libunistring5{a} libunwind8{a} liburiparser-dev{a} liburiparser1{a} libutfcpp-dev{a} libuv1t64{a} libva-drm2{a} libva-x11-2{a} libva2{a} libvdpau1{a} libvorbis0a{a} libvorbisenc2{a} libvorbisfile3{a} libvoro++1{a} libvpx9{a} libvtk9-dev{a} libvtk9-java{a} libvtk9-qt-dev{a} libvtk9.3{a} libvtk9.3-qt{a} libvulkan-dev{a} libvulkan1{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp-dev{a} libwebp7{a} libwebpdecoder3{a} libwebpdemux2{a} libwebpmux3{a} libwoff1{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libx264-164{a} libx265-209{a} libxau-dev{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxerces-c-dev{a} libxerces-c3.2t64{a} libxext-dev{a} libxext6{a} libxfixes3{a} libxft-dev{a} libxft2{a} libxi6{a} libxinerama1{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxml2-dev{a} libxmu6{a} libxpm4{a} libxrandr2{a} libxrender-dev{a} libxrender1{a} libxshmfence1{a} libxslt1.1{a} libxss-dev{a} libxss1{a} libxt-dev{a} libxt6t64{a} libxtst6{a} libxvidcore4{a} libxxf86vm1{a} libyuv0{a} libz3-4{a} libzmq5{a} libzstd-dev{a} libzvbi-common{a} libzvbi0t64{a} libzzip-0-13t64{a} m4{a} man-db{a} mariadb-common{a} media-types{a} mesa-libgallium{a} mpi-default-bin{a} mpi-default-dev{a} mpich{a} mysql-common{a} netbase{a} nettle-dev{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openjdk-21-jdk{a} openjdk-21-jdk-headless{a} openjdk-21-jre{a} openjdk-21-jre-headless{a} openssl{a} pinentry-curses{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} preview-latex-style{a} procps{a} proj-data{a} pybuild-plugin-pyproject{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-babel{a} python3-breathe{a} python3-build{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-defusedxml{a} python3-dev{a} python3-docutils{a} python3-enchant{a} python3-idna{a} python3-imagesize{a} python3-importlib-metadata{a} python3-inflect{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-mpi4py{a} python3-packaging{a} python3-pip-whl{a} python3-pkg-resources{a} python3-pygments{a} python3-pyproject-hooks{a} python3-requests{a} python3-roman{a} python3-setuptools{a} python3-setuptools-whl{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sphinx-tabs{a} python3-sphinxcontrib.jquery{a} python3-sphinxcontrib.spelling{a} python3-toml{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-venv{a} python3-vtk9{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.12-venv{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} qdoc-qt5{a} qhelpgenerator-qt5{a} qt5-assistant{a} qt5-qmake{a} qt5-qmake-bin{a} qt5-qmltooling-plugins{a} qtattributionsscanner-qt5{a} qtbase5-dev{a} qtbase5-dev-tools{a} qtchooser{a} qtdeclarative5-dev{a} qtdeclarative5-dev-tools{a} qttools5-dev{a} qttools5-dev-tools{a} qttools5-private-dev{a} readline-common{a} sensible-utils{a} sgml-base{a} shared-mime-info{a} sphinx-common{a} sphinx-rtd-theme-common{a} systemd{a} systemd-sysv{a} t1utils{a} tcl{a} tcl-dev{a} tcl8.6{a} tcl8.6-dev{a} tex-common{a} tex-gyre{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} tk{a} tk-dev{a} tk8.6{a} tk8.6-dev{a} tzdata{a} ucf{a} unixodbc-common{a} unixodbc-dev{a} uuid-dev{a} voro++-dev{a} vtk9{a} x11-common{a} x11proto-dev{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} xkb-data{a} xml-core{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
alsa-topology-conf alsa-ucm-conf apvlv aspell-am aspell-ar aspell-ar-large aspell-bg aspell-br aspell-ca aspell-cs aspell-cy aspell-da aspell-de aspell-de-1901 aspell-el aspell-en aspell-eo aspell-eo-cx7 aspell-es aspell-et aspell-eu aspell-fa aspell-fo aspell-fr aspell-ga aspell-gl-minimos aspell-he aspell-hr aspell-hsb aspell-hu aspell-hy aspell-is aspell-it aspell-kk aspell-ku aspell-lt aspell-lv aspell-nl aspell-no aspell-pl aspell-pt-br aspell-pt-pt aspell-ro aspell-ru aspell-sk aspell-sl aspell-sv aspell-tl aspell-uk aspell-uz at-spi2-core atril bzip2-doc chrony curl dvisvgm enchant-2 evince fonts-dejavu-extra fonts-liberation fonts-texgyre fonts-texgyre-math geoclue-2.0 ghostscript gnupg-utils gpg-wks-client gpgv gpgv-from-sq gstreamer1.0-plugins-base gv javascript-common krb5-locales less libaacs0 libarchive-cpio-perl libatk-wrapper-java-jni libcfitsio-doc libcups2 libfile-mimeinfo-perl libgdk-pixbuf2.0-bin libglib2.0-data libgpg-error-l10n libgtk-3-bin libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libhwloc-plugins libjson-xs-perl libkmod2 libldap-common libmail-sendmail-perl libnet-dbus-perl libnss-systemd libpam-cap libpng-tools libqt5svg5 librsvg2-common libsasl2-modules libspreadsheet-parseexcel-perl libssl3 libtasn1-doc libvdpau-va-gl1 libx11-protocol-perl linux-sysctl-defaults lmodern lynx mesa-va-drivers mesa-vdpau-drivers mesa-vulkan-drivers mupdf ntpsec okular openntpd openssh-client poppler-data proj-bin psmisc publicsuffix python3-pil qpdfview qpdfview-ps-plugin qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 ruby systemd-cryptsetup systemd-timesyncd texlive-plain-generic tipa va-driver-all vdpau-driver-all viewpdf.app wget x11-utils x11-xserver-utils xdg-user-dirs xpdf zathura-pdf-poppler zathura-ps
0 packages upgraded, 767 newly installed, 0 to remove and 0 not upgraded.
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Get: 1 http://deb.debian.org/debian unstable/main armhf libapparmor1 armhf 3.1.7-1+b3 [38.0 kB]
Get: 2 http://deb.debian.org/debian unstable/main armhf libsystemd-shared armhf 257.1-5 [1925 kB]
Get: 3 http://deb.debian.org/debian unstable/main armhf systemd armhf 257.1-5 [3471 kB]
Get: 4 http://deb.debian.org/debian unstable/main armhf systemd-sysv armhf 257.1-5 [60.2 kB]
Get: 5 http://deb.debian.org/debian unstable/main armhf libdbus-1-3 armhf 1.16.0-1 [154 kB]
Get: 6 http://deb.debian.org/debian unstable/main armhf dbus-bin armhf 1.16.0-1 [77.2 kB]
Get: 7 http://deb.debian.org/debian unstable/main armhf dbus-session-bus-common all 1.16.0-1 [51.1 kB]
Get: 8 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB]
Get: 9 http://deb.debian.org/debian unstable/main armhf dbus-daemon armhf 1.16.0-1 [144 kB]
Get: 10 http://deb.debian.org/debian unstable/main armhf dbus-system-bus-common all 1.16.0-1 [52.2 kB]
Get: 11 http://deb.debian.org/debian unstable/main armhf dbus armhf 1.16.0-1 [67.9 kB]
Get: 12 http://deb.debian.org/debian unstable/main armhf fonts-lato all 2.015-1 [2780 kB]
Get: 13 http://deb.debian.org/debian unstable/main armhf libglvnd0 armhf 1.7.0-1+b2 [51.8 kB]
Get: 14 http://deb.debian.org/debian unstable/main armhf libdrm-common all 2.4.123-1 [8084 B]
Get: 15 http://deb.debian.org/debian unstable/main armhf libdrm2 armhf 2.4.123-1 [34.1 kB]
Get: 16 http://deb.debian.org/debian unstable/main armhf libffi8 armhf 3.4.6-1 [20.0 kB]
Get: 17 http://deb.debian.org/debian unstable/main armhf libwayland-server0 armhf 1.23.0-1+b1 [27.9 kB]
Get: 18 http://deb.debian.org/debian unstable/main armhf libxau6 armhf 1:1.0.11-1 [19.7 kB]
Get: 19 http://deb.debian.org/debian unstable/main armhf libxdmcp6 armhf 1:1.1.5-1 [26.4 kB]
Get: 20 http://deb.debian.org/debian unstable/main armhf libxcb1 armhf 1.17.0-2+b1 [140 kB]
Get: 21 http://deb.debian.org/debian unstable/main armhf libxcb-randr0 armhf 1.17.0-2+b1 [116 kB]
Get: 22 http://deb.debian.org/debian unstable/main armhf libdrm-amdgpu1 armhf 2.4.123-1 [20.4 kB]
Get: 23 http://deb.debian.org/debian unstable/main armhf libdrm-radeon1 armhf 2.4.123-1 [19.6 kB]
Get: 24 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.192-4 [184 kB]
Get: 25 http://deb.debian.org/debian unstable/main armhf libglapi-mesa armhf 24.2.8-1 [44.6 kB]
Get: 26 http://deb.debian.org/debian unstable/main armhf libedit2 armhf 3.1-20240808-1 [77.9 kB]
Get: 27 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-5+b1 [9088 kB]
Get: 28 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB]
Get: 29 http://deb.debian.org/debian unstable/main armhf libz3-4 armhf 4.13.3-1 [7252 kB]
Get: 30 http://deb.debian.org/debian unstable/main armhf libllvm19 armhf 1:19.1.6-1 [23.8 MB]
Get: 31 http://deb.debian.org/debian unstable/main armhf libsensors-config all 1:3.6.0-10 [14.6 kB]
Get: 32 http://deb.debian.org/debian unstable/main armhf libsensors5 armhf 1:3.6.0-10+b1 [32.3 kB]
Get: 33 http://deb.debian.org/debian unstable/main armhf libx11-data all 2:1.8.10-2 [337 kB]
Get: 34 http://deb.debian.org/debian unstable/main armhf libx11-6 armhf 2:1.8.10-2 [750 kB]
Get: 35 http://deb.debian.org/debian unstable/main armhf libx11-xcb1 armhf 2:1.8.10-2 [241 kB]
Get: 36 http://deb.debian.org/debian unstable/main armhf libxcb-dri2-0 armhf 1.17.0-2+b1 [106 kB]
Get: 37 http://deb.debian.org/debian unstable/main armhf libxcb-dri3-0 armhf 1.17.0-2+b1 [107 kB]
Get: 38 http://deb.debian.org/debian unstable/main armhf libxcb-present0 armhf 1.17.0-2+b1 [105 kB]
Get: 39 http://deb.debian.org/debian unstable/main armhf libxcb-sync1 armhf 1.17.0-2+b1 [108 kB]
Get: 40 http://deb.debian.org/debian unstable/main armhf libxcb-xfixes0 armhf 1.17.0-2+b1 [109 kB]
Get: 41 http://deb.debian.org/debian unstable/main armhf libxshmfence1 armhf 1.3-1+b2 [8628 B]
Get: 42 http://deb.debian.org/debian unstable/main armhf mesa-libgallium armhf 24.2.8-1 [7097 kB]
Get: 43 http://deb.debian.org/debian unstable/main armhf libgbm1 armhf 24.2.8-1 [39.0 kB]
Get: 44 http://deb.debian.org/debian unstable/main armhf libwayland-client0 armhf 1.23.0-1+b1 [21.2 kB]
Get: 45 http://deb.debian.org/debian unstable/main armhf libxcb-shm0 armhf 1.17.0-2+b1 [105 kB]
Get: 46 http://deb.debian.org/debian unstable/main armhf libegl-mesa0 armhf 24.2.8-1 [110 kB]
Get: 47 http://deb.debian.org/debian unstable/main armhf libegl1 armhf 1.7.0-1+b2 [29.1 kB]
Get: 48 http://deb.debian.org/debian unstable/main armhf libgles2 armhf 1.7.0-1+b2 [17.7 kB]
Get: 49 http://deb.debian.org/debian unstable/main armhf libglib2.0-0t64 armhf 2.82.4-1 [1327 kB]
Get: 50 http://deb.debian.org/debian unstable/main armhf libdw1t64 armhf 0.192-4 [232 kB]
Get: 51 http://deb.debian.org/debian unstable/main armhf libunwind8 armhf 1.7.2-1 [45.8 kB]
Get: 52 http://deb.debian.org/debian unstable/main armhf libcap2-bin armhf 1:2.66-5+b1 [33.3 kB]
Get: 53 http://deb.debian.org/debian unstable/main armhf libgstreamer1.0-0 armhf 1.24.10-2 [1306 kB]
Get: 54 http://deb.debian.org/debian unstable/main armhf liborc-0.4-0t64 armhf 1:0.4.40-1 [160 kB]
Get: 55 http://deb.debian.org/debian unstable/main armhf iso-codes all 4.17.0-1 [3055 kB]
Get: 56 http://deb.debian.org/debian unstable/main armhf libgstreamer-plugins-base1.0-0 armhf 1.24.10-1 [911 kB]
Get: 57 http://deb.debian.org/debian unstable/main armhf libhyphen0 armhf 2.8.8-7+b2 [28.4 kB]
Get: 58 http://deb.debian.org/debian unstable/main armhf libjpeg62-turbo armhf 1:2.1.5-3+b1 [145 kB]
Get: 59 http://deb.debian.org/debian unstable/main armhf libpng16-16t64 armhf 1.6.44-3 [263 kB]
Get: 60 http://deb.debian.org/debian unstable/main armhf shared-mime-info armhf 2.4-5+b1 [753 kB]
Get: 61 http://deb.debian.org/debian unstable/main armhf libdouble-conversion3 armhf 3.3.0-1+b2 [39.2 kB]
Get: 62 http://deb.debian.org/debian unstable/main armhf libpcre2-16-0 armhf 10.44-5 [226 kB]
Get: 63 http://deb.debian.org/debian unstable/main armhf libqt5core5t64 armhf 5.15.15+dfsg-2 [1595 kB]
Get: 64 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB]
Get: 65 http://deb.debian.org/debian unstable/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [385 kB]
Get: 66 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 67 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get: 68 http://deb.debian.org/debian unstable/main armhf fontconfig-config armhf 2.15.0-1.1+b1 [318 kB]
Get: 69 http://deb.debian.org/debian unstable/main armhf libfontconfig1 armhf 2.15.0-1.1+b1 [371 kB]
Get: 70 http://deb.debian.org/debian unstable/main armhf fontconfig armhf 2.15.0-1.1+b1 [461 kB]
Get: 71 http://deb.debian.org/debian unstable/main armhf libgraphite2-3 armhf 1.3.14-2+b1 [63.1 kB]
Get: 72 http://deb.debian.org/debian unstable/main armhf libharfbuzz0b armhf 10.1.0-1 [418 kB]
Get: 73 http://deb.debian.org/debian unstable/main armhf x11-common all 1:7.7+23.1 [216 kB]
Get: 74 http://deb.debian.org/debian unstable/main armhf libice6 armhf 2:1.1.1-1 [58.5 kB]
Get: 75 http://deb.debian.org/debian unstable/main armhf libevdev2 armhf 1.13.3+dfsg-1 [26.2 kB]
Get: 76 http://deb.debian.org/debian unstable/main armhf libmtdev1t64 armhf 1.1.6-1.2+b1 [21.3 kB]
Get: 77 http://deb.debian.org/debian unstable/main armhf libgudev-1.0-0 armhf 238-5+b1 [12.9 kB]
Get: 78 http://deb.debian.org/debian unstable/main armhf libwacom-common all 2.13.0-1 [98.0 kB]
Get: 79 http://deb.debian.org/debian unstable/main armhf libwacom9 armhf 2.13.0-1 [20.8 kB]
Get: 80 http://deb.debian.org/debian unstable/main armhf libinput-bin armhf 1.26.2-1 [23.6 kB]
Get: 81 http://deb.debian.org/debian unstable/main armhf libinput10 armhf 1.26.2-1 [112 kB]
Get: 82 http://deb.debian.org/debian unstable/main armhf libmd4c0 armhf 0.5.2-2+b1 [43.8 kB]
Get: 83 http://deb.debian.org/debian unstable/main armhf libqt5dbus5t64 armhf 5.15.15+dfsg-2 [192 kB]
Get: 84 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB]
Get: 85 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.2~rc1-2 [22.9 kB]
Get: 86 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB]
Get: 87 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B]
Get: 88 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB]
Get: 89 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB]
Get: 90 http://deb.debian.org/debian unstable/main armhf libqt5network5t64 armhf 5.15.15+dfsg-2 [603 kB]
Get: 91 http://deb.debian.org/debian unstable/main armhf libsm6 armhf 2:1.2.4-1 [33.5 kB]
Get: 92 http://deb.debian.org/debian unstable/main armhf libxcb-icccm4 armhf 0.4.2-1 [26.4 kB]
Get: 93 http://deb.debian.org/debian unstable/main armhf libxcb-util1 armhf 0.4.0-1+b2 [21.4 kB]
Get: 94 http://deb.debian.org/debian unstable/main armhf libxcb-image0 armhf 0.4.0-2+b2 [21.0 kB]
Get: 95 http://deb.debian.org/debian unstable/main armhf libxcb-keysyms1 armhf 0.4.0-1+b3 [15.1 kB]
Get: 96 http://deb.debian.org/debian unstable/main armhf libxcb-render0 armhf 1.17.0-2+b1 [114 kB]
Get: 97 http://deb.debian.org/debian unstable/main armhf libxcb-render-util0 armhf 0.3.9-1+b2 [16.6 kB]
Get: 98 http://deb.debian.org/debian unstable/main armhf libxcb-shape0 armhf 1.17.0-2+b1 [106 kB]
Get: 99 http://deb.debian.org/debian unstable/main armhf libxcb-xinerama0 armhf 1.17.0-2+b1 [105 kB]
Get: 100 http://deb.debian.org/debian unstable/main armhf libxcb-xinput0 armhf 1.17.0-2+b1 [127 kB]
Get: 101 http://deb.debian.org/debian unstable/main armhf libxcb-xkb1 armhf 1.17.0-2+b1 [126 kB]
Get: 102 http://deb.debian.org/debian unstable/main armhf xkb-data all 2.42-1 [790 kB]
Get: 103 http://deb.debian.org/debian unstable/main armhf libxkbcommon0 armhf 1.7.0-2 [99.7 kB]
Get: 104 http://deb.debian.org/debian unstable/main armhf libxkbcommon-x11-0 armhf 1.7.0-2 [14.3 kB]
Get: 105 http://deb.debian.org/debian unstable/main armhf libxrender1 armhf 1:0.9.10-1.1+b3 [25.0 kB]
Get: 106 http://deb.debian.org/debian unstable/main armhf libqt5gui5t64 armhf 5.15.15+dfsg-2 [2686 kB]
Get: 107 http://deb.debian.org/debian unstable/main armhf libqt5positioning5 armhf 5.15.15+dfsg-2 [180 kB]
Get: 108 http://deb.debian.org/debian unstable/main armhf libavahi-common-data armhf 0.8-15 [112 kB]
Get: 109 http://deb.debian.org/debian unstable/main armhf libavahi-common3 armhf 0.8-15 [41.0 kB]
Get: 110 http://deb.debian.org/debian unstable/main armhf libavahi-client3 armhf 0.8-15 [44.4 kB]
Get: 111 http://deb.debian.org/debian unstable/main armhf libunistring5 armhf 1.3-1 [444 kB]
Get: 112 http://deb.debian.org/debian unstable/main armhf libidn2-0 armhf 2.3.7-2+b1 [125 kB]
Get: 113 http://deb.debian.org/debian unstable/main armhf libp11-kit0 armhf 0.25.5-3 [385 kB]
Get: 114 http://deb.debian.org/debian unstable/main armhf libtasn1-6 armhf 4.19.0-3+b3 [43.9 kB]
Get: 115 http://deb.debian.org/debian unstable/main armhf libgnutls30t64 armhf 3.8.8-2 [1370 kB]
Get: 116 http://deb.debian.org/debian unstable/main armhf libcups2t64 armhf 2.4.10-2+b1 [220 kB]
Get: 117 http://deb.debian.org/debian unstable/main armhf libqt5widgets5t64 armhf 5.15.15+dfsg-2 [2122 kB]
Get: 118 http://deb.debian.org/debian unstable/main armhf libqt5printsupport5t64 armhf 5.15.15+dfsg-2 [189 kB]
Get: 119 http://deb.debian.org/debian unstable/main armhf libqt5qml5 armhf 5.15.15+dfsg-3 [1217 kB]
Get: 120 http://deb.debian.org/debian unstable/main armhf libqt5qmlmodels5 armhf 5.15.15+dfsg-3 [167 kB]
Get: 121 http://deb.debian.org/debian unstable/main armhf libqt5quick5 armhf 5.15.15+dfsg-3 [1392 kB]
Get: 122 http://deb.debian.org/debian unstable/main armhf libqt5sensors5 armhf 5.15.15-2 [96.9 kB]
Get: 123 http://deb.debian.org/debian unstable/main armhf libqt5webchannel5 armhf 5.15.15-2 [50.5 kB]
Get: 124 http://deb.debian.org/debian unstable/main armhf libsharpyuv0 armhf 1.4.0-0.1+b1 [111 kB]
Get: 125 http://deb.debian.org/debian unstable/main armhf libwebp7 armhf 1.4.0-0.1+b1 [266 kB]
Get: 126 http://deb.debian.org/debian unstable/main armhf libwoff1 armhf 1.0.2-2+b2 [36.0 kB]
Get: 127 http://deb.debian.org/debian unstable/main armhf libgpg-error0 armhf 1.51-3 [71.9 kB]
Get: 128 http://deb.debian.org/debian unstable/main armhf libgcrypt20 armhf 1.11.0-7 [727 kB]
Get: 129 http://deb.debian.org/debian unstable/main armhf libxslt1.1 armhf 1.1.35-1.1+b1 [212 kB]
Get: 130 http://deb.debian.org/debian unstable/main armhf libqt5webkit5 armhf 5.212.0~alpha4-41 [9514 kB]
Get: 131 http://deb.debian.org/debian unstable/main armhf libxcb-glx0 armhf 1.17.0-2+b1 [120 kB]
Get: 132 http://deb.debian.org/debian unstable/main armhf libxext6 armhf 2:1.3.4-1+b2 [45.2 kB]
Get: 133 http://deb.debian.org/debian unstable/main armhf libxfixes3 armhf 1:6.0.0-2+b3 [18.6 kB]
Get: 134 http://deb.debian.org/debian unstable/main armhf libxxf86vm1 armhf 1:1.1.4-1+b3 [18.1 kB]
Get: 135 http://deb.debian.org/debian unstable/main armhf libvulkan1 armhf 1.3.296.0-1 [103 kB]
Get: 136 http://deb.debian.org/debian unstable/main armhf libgl1-mesa-dri armhf 24.2.8-1 [41.0 kB]
Get: 137 http://deb.debian.org/debian unstable/main armhf libglx-mesa0 armhf 24.2.8-1 [132 kB]
Get: 138 http://deb.debian.org/debian unstable/main armhf libglx0 armhf 1.7.0-1+b2 [32.6 kB]
Get: 139 http://deb.debian.org/debian unstable/main armhf libgl1 armhf 1.7.0-1+b2 [88.2 kB]
Get: 140 http://deb.debian.org/debian unstable/main armhf xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB]
Get: 141 http://deb.debian.org/debian unstable/main armhf x11proto-dev all 2024.1-1 [603 kB]
Get: 142 http://deb.debian.org/debian unstable/main armhf libxau-dev armhf 1:1.0.11-1 [23.0 kB]
Get: 143 http://deb.debian.org/debian unstable/main armhf libxdmcp-dev armhf 1:1.1.5-1 [42.9 kB]
Get: 144 http://deb.debian.org/debian unstable/main armhf xtrans-dev all 1.4.0-1 [98.7 kB]
Get: 145 http://deb.debian.org/debian unstable/main armhf libxcb1-dev armhf 1.17.0-2+b1 [180 kB]
Get: 146 http://deb.debian.org/debian unstable/main armhf libx11-dev armhf 2:1.8.10-2 [825 kB]
Get: 147 http://deb.debian.org/debian unstable/main armhf libglx-dev armhf 1.7.0-1+b2 [15.8 kB]
Get: 148 http://deb.debian.org/debian unstable/main armhf libgl-dev armhf 1.7.0-1+b2 [101 kB]
Get: 149 http://deb.debian.org/debian unstable/main armhf libegl-dev armhf 1.7.0-1+b2 [19.5 kB]
Get: 150 http://deb.debian.org/debian unstable/main armhf libgles1 armhf 1.7.0-1+b2 [12.2 kB]
Get: 151 http://deb.debian.org/debian unstable/main armhf libgles-dev armhf 1.7.0-1+b2 [50.8 kB]
Get: 152 http://deb.debian.org/debian unstable/main armhf libqt5concurrent5t64 armhf 5.15.15+dfsg-2 [43.3 kB]
Get: 153 http://deb.debian.org/debian unstable/main armhf libqt5sql5t64 armhf 5.15.15+dfsg-2 [111 kB]
Get: 154 http://deb.debian.org/debian unstable/main armhf libqt5test5t64 armhf 5.15.15+dfsg-2 [135 kB]
Get: 155 http://deb.debian.org/debian unstable/main armhf libqt5xml5t64 armhf 5.15.15+dfsg-2 [111 kB]
Get: 156 http://deb.debian.org/debian unstable/main armhf libpython3.12-minimal armhf 3.12.8-3 [802 kB]
Get: 157 http://deb.debian.org/debian unstable/main armhf python3.12-minimal armhf 3.12.8-3 [1794 kB]
Get: 158 http://deb.debian.org/debian unstable/main armhf python3-minimal armhf 3.12.8-1 [26.9 kB]
Get: 159 http://deb.debian.org/debian unstable/main armhf media-types all 10.1.0 [26.9 kB]
Get: 160 http://deb.debian.org/debian unstable/main armhf netbase all 6.4 [12.8 kB]
Get: 161 http://deb.debian.org/debian unstable/main armhf tzdata all 2024b-4 [256 kB]
Get: 162 http://deb.debian.org/debian unstable/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get: 163 http://deb.debian.org/debian unstable/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3+b1 [71.3 kB]
Get: 164 http://deb.debian.org/debian unstable/main armhf libnsl2 armhf 1.3.0-3+b3 [35.0 kB]
Get: 165 http://deb.debian.org/debian unstable/main armhf readline-common all 8.2-6 [69.4 kB]
Get: 166 http://deb.debian.org/debian unstable/main armhf libreadline8t64 armhf 8.2-6 [146 kB]
Get: 167 http://deb.debian.org/debian unstable/main armhf libpython3.12-stdlib armhf 3.12.8-3 [1824 kB]
Get: 168 http://deb.debian.org/debian unstable/main armhf python3.12 armhf 3.12.8-3 [677 kB]
Get: 169 http://deb.debian.org/debian unstable/main armhf libpython3-stdlib armhf 3.12.8-1 [9792 B]
Get: 170 http://deb.debian.org/debian unstable/main armhf python3 armhf 3.12.8-1 [27.9 kB]
Get: 171 http://deb.debian.org/debian unstable/main armhf libvulkan-dev armhf 1.3.296.0-1 [1397 kB]
Get: 172 http://deb.debian.org/debian unstable/main armhf libxext-dev armhf 2:1.3.4-1+b2 [100 kB]
Get: 173 http://deb.debian.org/debian unstable/main armhf qt5-qmake-bin armhf 5.15.15+dfsg-2 [914 kB]
Get: 174 http://deb.debian.org/debian unstable/main armhf qtchooser armhf 66-2 [23.6 kB]
Get: 175 http://deb.debian.org/debian unstable/main armhf qt5-qmake armhf 5.15.15+dfsg-2 [224 kB]
Get: 176 http://deb.debian.org/debian unstable/main armhf qtbase5-dev-tools armhf 5.15.15+dfsg-2 [659 kB]
Get: 177 http://deb.debian.org/debian unstable/main armhf qtbase5-dev armhf 5.15.15+dfsg-2 [1070 kB]
Get: 178 http://deb.debian.org/debian unstable/main armhf libqt5qmlworkerscript5 armhf 5.15.15+dfsg-3 [33.2 kB]
Get: 179 http://deb.debian.org/debian unstable/main armhf libqt5quickparticles5 armhf 5.15.15+dfsg-3 [185 kB]
Get: 180 http://deb.debian.org/debian unstable/main armhf libqt5quickshapes5 armhf 5.15.15+dfsg-3 [86.1 kB]
Get: 181 http://deb.debian.org/debian unstable/main armhf libqt5quicktest5 armhf 5.15.15+dfsg-3 [52.7 kB]
Get: 182 http://deb.debian.org/debian unstable/main armhf libqt5quickwidgets5 armhf 5.15.15+dfsg-3 [36.7 kB]
Get: 183 http://deb.debian.org/debian unstable/main armhf qt5-qmltooling-plugins armhf 5.15.15+dfsg-3 [156 kB]
Get: 184 http://deb.debian.org/debian unstable/main armhf qtdeclarative5-dev-tools armhf 5.15.15+dfsg-3 [529 kB]
Get: 185 http://deb.debian.org/debian unstable/main armhf qtdeclarative5-dev armhf 5.15.15+dfsg-3 [432 kB]
Get: 186 http://deb.debian.org/debian unstable/main armhf libqt5webkit5-dev armhf 5.212.0~alpha4-41 [55.4 kB]
Get: 187 http://deb.debian.org/debian unstable/main armhf libpython3.13-minimal armhf 3.13.1-2 [844 kB]
Get: 188 http://deb.debian.org/debian unstable/main armhf python3.13-minimal armhf 3.13.1-2 [1838 kB]
Get: 189 http://deb.debian.org/debian unstable/main armhf sgml-base all 1.31 [15.4 kB]
Get: 190 http://deb.debian.org/debian unstable/main armhf libproc2-0 armhf 2:4.0.4-6 [56.0 kB]
Get: 191 http://deb.debian.org/debian unstable/main armhf procps armhf 2:4.0.4-6 [864 kB]
Get: 192 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB]
Get: 193 http://deb.debian.org/debian unstable/main armhf openssl armhf 3.3.2-2 [1348 kB]
Get: 194 http://deb.debian.org/debian unstable/main armhf ca-certificates all 20241223 [164 kB]
Get: 195 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB]
Get: 196 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB]
Get: 197 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3+b1 [42.3 kB]
Get: 198 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.22.5-3 [195 kB]
Get: 199 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB]
Get: 200 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-7 [1095 kB]
Get: 201 http://deb.debian.org/debian unstable/main armhf libpam-systemd armhf 257.1-5 [263 kB]
Get: 202 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.2-13 [84.7 kB]
Get: 203 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB]
Get: 204 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.13.0-1 [1382 kB]
Get: 205 http://deb.debian.org/debian unstable/main armhf ucf all 3.0046 [41.1 kB]
Get: 206 http://deb.debian.org/debian unstable/main armhf libgdk-pixbuf2.0-common all 2.42.12+dfsg-1 [311 kB]
Get: 207 http://deb.debian.org/debian unstable/main armhf libdeflate0 armhf 1.22-1 [36.3 kB]
Get: 208 http://deb.debian.org/debian unstable/main armhf libjbig0 armhf 2.1-6.1+b2 [27.3 kB]
Get: 209 http://deb.debian.org/debian unstable/main armhf liblerc4 armhf 4.0.0+ds-5 [146 kB]
Get: 210 http://deb.debian.org/debian unstable/main armhf libtiff6 armhf 4.5.1+git230720-5 [302 kB]
Get: 211 http://deb.debian.org/debian unstable/main armhf libgdk-pixbuf-2.0-0 armhf 2.42.12+dfsg-1+b1 [124 kB]
Get: 212 http://deb.debian.org/debian unstable/main armhf gtk-update-icon-cache armhf 4.16.7+ds-1 [49.1 kB]
Get: 213 http://deb.debian.org/debian unstable/main armhf hicolor-icon-theme all 0.18-1 [12.0 kB]
Get: 214 http://deb.debian.org/debian unstable/main armhf adwaita-icon-theme all 47.0-2 [463 kB]
Get: 215 http://deb.debian.org/debian unstable/main armhf at-spi2-common all 2.54.0-1 [170 kB]
Get: 216 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB]
Get: 217 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3 [493 kB]
Get: 218 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get: 219 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get: 220 http://deb.debian.org/debian unstable/main armhf autopoint all 0.22.5-3 [723 kB]
Get: 221 http://deb.debian.org/debian unstable/main armhf ca-certificates-java all 20240118 [11.6 kB]
Get: 222 http://deb.debian.org/debian unstable/main armhf cfortran all 20210827-1 [67.7 kB]
Get: 223 http://deb.debian.org/debian unstable/main armhf cmake-data all 3.31.2-1 [2267 kB]
Get: 224 http://deb.debian.org/debian unstable/main armhf libarchive13t64 armhf 3.7.4-1.1 [306 kB]
Get: 225 http://deb.debian.org/debian unstable/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8 [18.2 kB]
Get: 226 http://deb.debian.org/debian unstable/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8 [50.2 kB]
Get: 227 http://deb.debian.org/debian unstable/main armhf libldap-2.5-0 armhf 2.5.19+dfsg-1 [163 kB]
Get: 228 http://deb.debian.org/debian unstable/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB]
Get: 229 http://deb.debian.org/debian unstable/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB]
Get: 230 http://deb.debian.org/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB]
Get: 231 http://deb.debian.org/debian unstable/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB]
Get: 232 http://deb.debian.org/debian unstable/main armhf libcurl4t64 armhf 8.11.1-1 [303 kB]
Get: 233 http://deb.debian.org/debian unstable/main armhf libjsoncpp26 armhf 1.9.6-3 [69.9 kB]
Get: 234 http://deb.debian.org/debian unstable/main armhf librhash1 armhf 1.4.5-1 [143 kB]
Get: 235 http://deb.debian.org/debian unstable/main armhf libuv1t64 armhf 1.48.0-7 [134 kB]
Get: 236 http://deb.debian.org/debian unstable/main armhf cmake armhf 3.31.2-1 [5743 kB]
Get: 237 http://deb.debian.org/debian unstable/main armhf comerr-dev armhf 2.1-1.47.2~rc1-2 [54.9 kB]
Get: 238 http://deb.debian.org/debian unstable/main armhf dbus-user-session armhf 1.16.0-1 [51.0 kB]
Get: 239 http://deb.debian.org/debian unstable/main armhf libdconf1 armhf 0.40.0-4+b3 [37.0 kB]
Get: 240 http://deb.debian.org/debian unstable/main armhf dconf-service armhf 0.40.0-4+b3 [27.7 kB]
Get: 241 http://deb.debian.org/debian unstable/main armhf dconf-gsettings-backend armhf 0.40.0-4+b3 [24.1 kB]
Get: 242 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.22 [90.5 kB]
Get: 243 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-8 [517 kB]
Get: 244 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB]
Get: 245 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get: 246 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get: 247 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get: 248 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB]
Get: 249 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.22.5-3 [1488 kB]
Get: 250 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 251 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get: 252 http://deb.debian.org/debian unstable/main armhf debhelper all 13.22 [919 kB]
Get: 253 http://deb.debian.org/debian unstable/main armhf java-common all 0.76 [6776 B]
Get: 254 http://deb.debian.org/debian unstable/main armhf liblcms2-2 armhf 2.16-2 [131 kB]
Get: 255 http://deb.debian.org/debian unstable/main armhf libnspr4 armhf 2:4.36-1 [87.8 kB]
Get: 256 http://deb.debian.org/debian unstable/main armhf libnss3 armhf 2:3.106-1 [1204 kB]
Get: 257 http://deb.debian.org/debian unstable/main armhf libpcsclite1 armhf 2.3.1-1 [51.8 kB]
Get: 258 http://deb.debian.org/debian unstable/main armhf openjdk-21-jre-headless armhf 21.0.5+11-1 [35.6 MB]
Get: 259 http://deb.debian.org/debian unstable/main armhf default-jre-headless armhf 2:1.21-76 [3192 B]
Get: 260 http://deb.debian.org/debian unstable/main armhf libatk1.0-0t64 armhf 2.54.0-1 [44.4 kB]
Get: 261 http://deb.debian.org/debian unstable/main armhf libxi6 armhf 2:1.8.2-1 [73.6 kB]
Get: 262 http://deb.debian.org/debian unstable/main armhf libatspi2.0-0t64 armhf 2.54.0-1 [66.0 kB]
Get: 263 http://deb.debian.org/debian unstable/main armhf libatk-bridge2.0-0t64 armhf 2.54.0-1 [59.9 kB]
Get: 264 http://deb.debian.org/debian unstable/main armhf libpixman-1-0 armhf 0.44.0-3 [164 kB]
Get: 265 http://deb.debian.org/debian unstable/main armhf libcairo2 armhf 1.18.2-2 [443 kB]
Get: 266 http://deb.debian.org/debian unstable/main armhf libcairo-gobject2 armhf 1.18.2-2 [129 kB]
Get: 267 http://deb.debian.org/debian unstable/main armhf libcloudproviders0 armhf 0.3.6-1+b1 [24.7 kB]
Get: 268 http://deb.debian.org/debian unstable/main armhf libcolord2 armhf 1.4.7-1+b2 [121 kB]
Get: 269 http://deb.debian.org/debian unstable/main armhf libepoxy0 armhf 1.5.10-2 [165 kB]
Get: 270 http://deb.debian.org/debian unstable/main armhf libfribidi0 armhf 1.0.16-1 [24.6 kB]
Get: 271 http://deb.debian.org/debian unstable/main armhf libthai-data all 0.1.29-2 [168 kB]
Get: 272 http://deb.debian.org/debian unstable/main armhf libdatrie1 armhf 0.2.13-3+b1 [34.7 kB]
Get: 273 http://deb.debian.org/debian unstable/main armhf libthai0 armhf 0.1.29-2+b1 [46.0 kB]
Get: 274 http://deb.debian.org/debian unstable/main armhf libpango-1.0-0 armhf 1.55.0+ds-3 [200 kB]
Get: 275 http://deb.debian.org/debian unstable/main armhf libpangoft2-1.0-0 armhf 1.55.0+ds-3 [47.7 kB]
Get: 276 http://deb.debian.org/debian unstable/main armhf libpangocairo-1.0-0 armhf 1.55.0+ds-3 [31.3 kB]
Get: 277 http://deb.debian.org/debian unstable/main armhf libwayland-cursor0 armhf 1.23.0-1+b1 [10.5 kB]
Get: 278 http://deb.debian.org/debian unstable/main armhf libwayland-egl1 armhf 1.23.0-1+b1 [5452 B]
Get: 279 http://deb.debian.org/debian unstable/main armhf libxcomposite1 armhf 1:0.4.6-1 [15.8 kB]
Get: 280 http://deb.debian.org/debian unstable/main armhf libxcursor1 armhf 1:1.2.2-1+b1 [34.1 kB]
Get: 281 http://deb.debian.org/debian unstable/main armhf libxdamage1 armhf 1:1.1.6-1+b2 [14.8 kB]
Get: 282 http://deb.debian.org/debian unstable/main armhf libxinerama1 armhf 2:1.1.4-3+b3 [15.7 kB]
Get: 283 http://deb.debian.org/debian unstable/main armhf libxrandr2 armhf 2:1.5.4-1+b2 [33.2 kB]
Get: 284 http://deb.debian.org/debian unstable/main armhf libgtk-3-common all 3.24.43-4 [4657 kB]
Get: 285 http://deb.debian.org/debian unstable/main armhf libgtk-3-0t64 armhf 3.24.43-4 [2368 kB]
Get: 286 http://deb.debian.org/debian unstable/main armhf libasound2-data all 1.2.12-1 [21.0 kB]
Get: 287 http://deb.debian.org/debian unstable/main armhf libasound2t64 armhf 1.2.12-1+b1 [317 kB]
Get: 288 http://deb.debian.org/debian unstable/main armhf libgif7 armhf 5.2.2-1+b1 [41.4 kB]
Get: 289 http://deb.debian.org/debian unstable/main armhf libxtst6 armhf 2:1.2.3-1.1+b3 [24.3 kB]
Get: 290 http://deb.debian.org/debian unstable/main armhf openjdk-21-jre armhf 21.0.5+11-1 [180 kB]
Get: 291 http://deb.debian.org/debian unstable/main armhf default-jre armhf 2:1.21-76 [1068 B]
Get: 292 http://deb.debian.org/debian unstable/main armhf openjdk-21-jdk-headless armhf 21.0.5+11-1 [78.3 MB]
Get: 293 http://deb.debian.org/debian unstable/main armhf default-jdk-headless armhf 2:1.21-76 [1124 B]
Get: 294 http://deb.debian.org/debian unstable/main armhf openjdk-21-jdk armhf 21.0.5+11-1 [3422 kB]
Get: 295 http://deb.debian.org/debian unstable/main armhf default-jdk armhf 2:1.21-76 [1076 B]
Get: 296 http://deb.debian.org/debian unstable/main armhf mysql-common all 5.8+1.1.1 [6784 B]
Get: 297 http://deb.debian.org/debian unstable/main armhf mariadb-common all 1:11.4.4-2 [27.8 kB]
Get: 298 http://deb.debian.org/debian unstable/main armhf libmariadb3 armhf 1:11.4.4-2 [162 kB]
Get: 299 http://deb.debian.org/debian unstable/main armhf libssl-dev armhf 3.3.2-2 [2385 kB]
Get: 300 http://deb.debian.org/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB]
Get: 301 http://deb.debian.org/debian unstable/main armhf libmariadb-dev armhf 1:11.4.4-2 [251 kB]
Get: 302 http://deb.debian.org/debian unstable/main armhf libmariadb-dev-compat armhf 1:11.4.4-2 [26.6 kB]
Get: 303 http://deb.debian.org/debian unstable/main armhf default-libmysqlclient-dev armhf 1.1.1 [3252 B]
Get: 304 http://deb.debian.org/debian unstable/main armhf python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 305 http://deb.debian.org/debian unstable/main armhf python3-more-itertools all 10.5.0-1 [63.8 kB]
Get: 306 http://deb.debian.org/debian unstable/main armhf python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 307 http://deb.debian.org/debian unstable/main armhf python3-zipp all 3.21.0-1 [10.6 kB]
Get: 308 http://deb.debian.org/debian unstable/main armhf python3-importlib-metadata all 8.5.0-1 [21.0 kB]
Get: 309 http://deb.debian.org/debian unstable/main armhf python3-typeguard all 4.4.1-1 [37.0 kB]
Get: 310 http://deb.debian.org/debian unstable/main armhf python3-inflect all 7.3.1-2 [32.4 kB]
Get: 311 http://deb.debian.org/debian unstable/main armhf python3-jaraco.context all 6.0.0-1 [7984 B]
Get: 312 http://deb.debian.org/debian unstable/main armhf python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 313 http://deb.debian.org/debian unstable/main armhf python3-pkg-resources all 75.6.0-1 [222 kB]
Get: 314 http://deb.debian.org/debian unstable/main armhf python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 315 http://deb.debian.org/debian unstable/main armhf python3-setuptools all 75.6.0-1 [720 kB]
Get: 316 http://deb.debian.org/debian unstable/main armhf dh-python all 6.20241217 [113 kB]
Get: 317 http://deb.debian.org/debian unstable/main armhf libtext-iconv-perl armhf 1.7-8+b4 [13.7 kB]
Get: 318 http://deb.debian.org/debian unstable/main armhf emacsen-common all 3.0.5 [12.3 kB]
Get: 319 http://deb.debian.org/debian unstable/main armhf dictionaries-common all 1.30.2 [172 kB]
Get: 320 http://deb.debian.org/debian unstable/main armhf libassuan9 armhf 3.0.1-2 [53.7 kB]
Get: 321 http://deb.debian.org/debian unstable/main armhf gpgconf armhf 2.2.45-2 [104 kB]
Get: 322 http://deb.debian.org/debian unstable/main armhf libksba8 armhf 1.6.7-2+b1 [115 kB]
Get: 323 http://deb.debian.org/debian unstable/main armhf libnpth0t64 armhf 1.8-2 [21.8 kB]
Get: 324 http://deb.debian.org/debian unstable/main armhf dirmngr armhf 2.2.45-2 [322 kB]
Get: 325 http://deb.debian.org/debian unstable/main armhf xml-core all 0.19 [20.1 kB]
Get: 326 http://deb.debian.org/debian unstable/main armhf docutils-common all 0.21.2+dfsg-2 [128 kB]
Get: 327 http://deb.debian.org/debian unstable/main armhf libclang-cpp19 armhf 1:19.1.6-1 [11.6 MB]
Get: 328 http://deb.debian.org/debian unstable/main armhf libclang1-19 armhf 1:19.1.6-1 [6611 kB]
Get: 329 http://deb.debian.org/debian unstable/main armhf libfmt10 armhf 10.1.1+ds1-4 [118 kB]
Get: 330 http://deb.debian.org/debian unstable/main armhf doxygen armhf 1.9.8+ds-2+b3 [4499 kB]
Get: 331 http://deb.debian.org/debian unstable/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB]
Get: 332 http://deb.debian.org/debian unstable/main armhf fonts-lmodern all 2.005-1 [4540 kB]
Get: 333 http://deb.debian.org/debian unstable/main armhf fonts-mathjax all 2.7.9+dfsg-1 [2210 kB]
Get: 334 http://deb.debian.org/debian unstable/main armhf gdal-data all 3.9.3+dfsg-1 [564 kB]
Get: 335 http://deb.debian.org/debian unstable/main armhf gdal-plugins armhf 3.9.3+dfsg-1+b2 [343 kB]
Get: 336 http://deb.debian.org/debian unstable/main armhf libgfortran5 armhf 14.2.0-11 [264 kB]
Get: 337 http://deb.debian.org/debian unstable/main armhf libgfortran-14-dev armhf 14.2.0-11 [309 kB]
Get: 338 http://deb.debian.org/debian unstable/main armhf gfortran-14-arm-linux-gnueabihf armhf 14.2.0-11 [8778 kB]
Get: 339 http://deb.debian.org/debian unstable/main armhf gfortran-14 armhf 14.2.0-11 [13.2 kB]
Get: 340 http://deb.debian.org/debian unstable/main armhf gfortran-arm-linux-gnueabihf armhf 4:14.2.0-1 [1288 B]
Get: 341 http://deb.debian.org/debian unstable/main armhf gfortran armhf 4:14.2.0-1 [1428 B]
Get: 342 http://deb.debian.org/debian unstable/main armhf libnghttp3-9 armhf 1.6.0-2 [56.8 kB]
Get: 343 http://deb.debian.org/debian unstable/main armhf libngtcp2-16 armhf 1.9.1-1 [115 kB]
Get: 344 http://deb.debian.org/debian unstable/main armhf libngtcp2-crypto-gnutls8 armhf 1.9.1-1 [15.8 kB]
Get: 345 http://deb.debian.org/debian unstable/main armhf libcurl3t64-gnutls armhf 8.11.1-1 [311 kB]
Get: 346 http://deb.debian.org/debian unstable/main armhf liberror-perl all 0.17029-2 [29.0 kB]
Get: 347 http://deb.debian.org/debian unstable/main armhf git-man all 1:2.45.2-1.3 [2159 kB]
Get: 348 http://deb.debian.org/debian unstable/main armhf git armhf 1:2.45.2-1.3 [6361 kB]
Get: 349 http://deb.debian.org/debian unstable/main armhf gnupg-l10n all 2.2.45-2 [705 kB]
Get: 350 http://deb.debian.org/debian unstable/main armhf gpg armhf 2.2.45-2 [463 kB]
Get: 351 http://deb.debian.org/debian unstable/main armhf pinentry-curses armhf 1.2.1-5 [76.5 kB]
Get: 352 http://deb.debian.org/debian unstable/main armhf gpg-agent armhf 2.2.45-2 [210 kB]
Get: 353 http://deb.debian.org/debian unstable/main armhf gpgsm armhf 2.2.45-2 [218 kB]
Get: 354 http://deb.debian.org/debian unstable/main armhf gnupg all 2.2.45-2 [376 kB]
Get: 355 http://deb.debian.org/debian unstable/main armhf libcdt5 armhf 2.42.4-2+b1 [37.9 kB]
Get: 356 http://deb.debian.org/debian unstable/main armhf libcgraph6 armhf 2.42.4-2+b1 [56.8 kB]
Get: 357 http://deb.debian.org/debian unstable/main armhf libaom3 armhf 3.11.0-1 [1599 kB]
Get: 358 http://deb.debian.org/debian unstable/main armhf libdav1d7 armhf 1.5.0-1+b1 [250 kB]
Get: 359 http://deb.debian.org/debian unstable/main armhf libabsl20230802 armhf 20230802.1-4 [432 kB]
Get: 360 http://deb.debian.org/debian unstable/main armhf libgav1-1 armhf 0.19.0-2+b2 [298 kB]
Get: 361 http://deb.debian.org/debian unstable/main armhf librav1e0.7 armhf 0.7.1-7+b3 [585 kB]
Get: 362 http://deb.debian.org/debian unstable/main armhf libsvtav1enc2 armhf 2.3.0+dfsg-1 [970 kB]
Get: 363 http://deb.debian.org/debian unstable/main armhf libyuv0 armhf 0.0.1898.20241219-1 [86.6 kB]
Get: 364 http://deb.debian.org/debian unstable/main armhf libavif16 armhf 1.1.1-1 [103 kB]
Get: 365 http://deb.debian.org/debian unstable/main armhf libheif-plugin-dav1d armhf 1.19.3-1 [10.8 kB]
Get: 366 http://deb.debian.org/debian unstable/main armhf libde265-0 armhf 1.0.15-1+b2 [145 kB]
Get: 367 http://deb.debian.org/debian unstable/main armhf libheif-plugin-libde265 armhf 1.19.3-1 [13.9 kB]
Get: 368 http://deb.debian.org/debian unstable/main armhf libheif1 armhf 1.19.3-1 [410 kB]
Get: 369 http://deb.debian.org/debian unstable/main armhf libimagequant0 armhf 2.18.0-1+b2 [30.5 kB]
Get: 370 http://deb.debian.org/debian unstable/main armhf libraqm0 armhf 0.10.2-1 [11.6 kB]
Get: 371 http://deb.debian.org/debian unstable/main armhf libxpm4 armhf 1:3.5.17-1+b2 [50.4 kB]
Get: 372 http://deb.debian.org/debian unstable/main armhf libgd3 armhf 2.3.3-12+b1 [105 kB]
Get: 373 http://deb.debian.org/debian unstable/main armhf libgts-0.7-5t64 armhf 0.7.6+darcs121130-5.2+b1 [133 kB]
Get: 374 http://deb.debian.org/debian unstable/main armhf libltdl7 armhf 2.4.7-8 [390 kB]
Get: 375 http://deb.debian.org/debian unstable/main armhf libpathplan4 armhf 2.42.4-2+b1 [39.9 kB]
Get: 376 http://deb.debian.org/debian unstable/main armhf libgvc6 armhf 2.42.4-2+b1 [581 kB]
Get: 377 http://deb.debian.org/debian unstable/main armhf libgvpr2 armhf 2.42.4-2+b1 [168 kB]
Get: 378 http://deb.debian.org/debian unstable/main armhf liblab-gamut1 armhf 2.42.4-2+b1 [198 kB]
Get: 379 http://deb.debian.org/debian unstable/main armhf libxt6t64 armhf 1:1.2.1-1.2+b1 [160 kB]
Get: 380 http://deb.debian.org/debian unstable/main armhf libxmu6 armhf 2:1.1.3-3+b3 [51.2 kB]
Get: 381 http://deb.debian.org/debian unstable/main armhf libxaw7 armhf 2:1.0.16-1 [177 kB]
Get: 382 http://deb.debian.org/debian unstable/main armhf graphviz armhf 2.42.4-2+b1 [500 kB]
Get: 383 http://deb.debian.org/debian unstable/main armhf hdf5-helpers armhf 1.14.5+repack-1 [26.3 kB]
Get: 384 http://deb.debian.org/debian unstable/main armhf htmldoc-common all 1.9.20-1 [1994 kB]
Get: 385 http://deb.debian.org/debian unstable/main armhf libxft2 armhf 2.3.6-1+b3 [46.5 kB]
Get: 386 http://deb.debian.org/debian unstable/main armhf libfltk1.3t64 armhf 1.3.8-6.1+b1 [493 kB]
Get: 387 http://deb.debian.org/debian unstable/main armhf libfltk-images1.3t64 armhf 1.3.8-6.1+b1 [47.2 kB]
Get: 388 http://deb.debian.org/debian unstable/main armhf htmldoc armhf 1.9.20-1 [155 kB]
Get: 389 http://deb.debian.org/debian unstable/main armhf hunspell-en-us all 1:2020.12.07-3 [559 kB]
Get: 390 http://deb.debian.org/debian unstable/main armhf libhwloc15 armhf 2.11.2-1 [134 kB]
Get: 391 http://deb.debian.org/debian unstable/main armhf hwloc-nox armhf 2.11.2-1 [201 kB]
Get: 392 http://deb.debian.org/debian unstable/main armhf icu-devtools armhf 72.1-5+b1 [187 kB]
Get: 393 http://deb.debian.org/debian unstable/main armhf libgssrpc4t64 armhf 1.21.3-3 [52.5 kB]
Get: 394 http://deb.debian.org/debian unstable/main armhf libkadm5clnt-mit12 armhf 1.21.3-3 [37.0 kB]
Get: 395 http://deb.debian.org/debian unstable/main armhf libkdb5-10t64 armhf 1.21.3-3 [37.1 kB]
Get: 396 http://deb.debian.org/debian unstable/main armhf libkadm5srv-mit12 armhf 1.21.3-3 [46.7 kB]
Get: 397 http://deb.debian.org/debian unstable/main armhf krb5-multidev armhf 1.21.3-3 [126 kB]
Get: 398 http://deb.debian.org/debian unstable/main armhf tex-common all 6.18 [32.5 kB]
Get: 399 http://deb.debian.org/debian unstable/main armhf libpaper2 armhf 2.2.5-0.3 [15.6 kB]
Get: 400 http://deb.debian.org/debian unstable/main armhf libpaper-utils armhf 2.2.5-0.3 [14.9 kB]
Get: 401 http://deb.debian.org/debian unstable/main armhf libkpathsea6 armhf 2024.20240313.70630+ds-5+b1 [147 kB]
Get: 402 http://deb.debian.org/debian unstable/main armhf libptexenc1 armhf 2024.20240313.70630+ds-5+b1 [44.8 kB]
Get: 403 http://deb.debian.org/debian unstable/main armhf libsynctex2 armhf 2024.20240313.70630+ds-5+b1 [49.5 kB]
Get: 404 http://deb.debian.org/debian unstable/main armhf libtexlua53-5 armhf 2024.20240313.70630+ds-5+b1 [83.1 kB]
Get: 405 http://deb.debian.org/debian unstable/main armhf t1utils armhf 1.41-4 [54.7 kB]
Get: 406 http://deb.debian.org/debian unstable/main armhf libmpfi0 armhf 1.5.4+ds-4 [28.8 kB]
Get: 407 http://deb.debian.org/debian unstable/main armhf libpotrace0 armhf 1.16-2+b2 [22.7 kB]
Get: 408 http://deb.debian.org/debian unstable/main armhf libteckit0 armhf 2.5.12+ds1-1+b1 [259 kB]
Get: 409 http://deb.debian.org/debian unstable/main armhf libzzip-0-13t64 armhf 0.13.72+dfsg.1-1.3 [53.1 kB]
Get: 410 http://deb.debian.org/debian unstable/main armhf texlive-binaries armhf 2024.20240313.70630+ds-5+b1 [6100 kB]
Get: 411 http://deb.debian.org/debian unstable/main armhf xdg-utils all 1.2.1-2 [75.8 kB]
Get: 412 http://deb.debian.org/debian unstable/main armhf texlive-base all 2024.20241115-1 [22.7 MB]
Get: 413 http://deb.debian.org/debian unstable/main armhf texlive-latex-base all 2024.20241115-1 [1278 kB]
Get: 414 http://deb.debian.org/debian unstable/main armhf latexmk all 1:4.86~ds-1 [507 kB]
Get: 415 http://deb.debian.org/debian unstable/main armhf libaec0 armhf 1.1.3-1+b1 [21.9 kB]
Get: 416 http://deb.debian.org/debian unstable/main armhf libsz2 armhf 1.1.3-1+b1 [8036 B]
Get: 417 http://deb.debian.org/debian unstable/main armhf libaec-dev armhf 1.1.3-1+b1 [19.3 kB]
Get: 418 http://deb.debian.org/debian unstable/main armhf libapache-pom-java all 33-2 [5852 B]
Get: 419 http://deb.debian.org/debian unstable/main armhf libblas3 armhf 3.12.0-4 [111 kB]
Get: 420 http://deb.debian.org/debian unstable/main armhf liblapack3 armhf 3.12.0-4 [1828 kB]
Get: 421 http://deb.debian.org/debian unstable/main armhf libarpack2t64 armhf 3.9.1-4 [85.1 kB]
Get: 422 http://deb.debian.org/debian unstable/main armhf libarmadillo14 armhf 1:14.2.1+dfsg-1 [99.7 kB]
Get: 423 http://deb.debian.org/debian unstable/main armhf libblas-dev armhf 3.12.0-4 [121 kB]
Get: 424 http://deb.debian.org/debian unstable/main armhf liblapack-dev armhf 3.12.0-4 [1930 kB]
Get: 425 http://deb.debian.org/debian unstable/main armhf libarpack2-dev armhf 3.9.1-4 [103 kB]
Get: 426 http://deb.debian.org/debian unstable/main armhf libhdf5-310 armhf 1.14.5+repack-1 [1271 kB]
Get: 427 http://deb.debian.org/debian unstable/main armhf libhdf5-fortran-310 armhf 1.14.5+repack-1 [101 kB]
Get: 428 http://deb.debian.org/debian unstable/main armhf libhdf5-hl-310 armhf 1.14.5+repack-1 [67.0 kB]
Get: 429 http://deb.debian.org/debian unstable/main armhf libhdf5-hl-fortran-310 armhf 1.14.5+repack-1 [38.0 kB]
Get: 430 http://deb.debian.org/debian unstable/main armhf libhdf5-cpp-310 armhf 1.14.5+repack-1 [124 kB]
Get: 431 http://deb.debian.org/debian unstable/main armhf libhdf5-hl-cpp-310 armhf 1.14.5+repack-1 [23.8 kB]
Get: 432 http://deb.debian.org/debian unstable/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-3+b1 [263 kB]
Get: 433 http://deb.debian.org/debian unstable/main armhf libjpeg-dev armhf 1:2.1.5-3+b1 [72.2 kB]
Get: 434 http://deb.debian.org/debian unstable/main armhf libbrotli-dev armhf 1.1.0-2+b6 [293 kB]
Get: 435 http://deb.debian.org/debian unstable/main armhf libidn2-dev armhf 2.3.7-2+b1 [119 kB]
Get: 436 http://deb.debian.org/debian unstable/main armhf libkrb5-dev armhf 1.21.3-3 [15.8 kB]
Get: 437 http://deb.debian.org/debian unstable/main armhf libldap-dev armhf 2.5.19+dfsg-1 [276 kB]
Get: 438 http://deb.debian.org/debian unstable/main armhf libpkgconf3 armhf 1.8.1-4 [31.8 kB]
Get: 439 http://deb.debian.org/debian unstable/main armhf pkgconf-bin armhf 1.8.1-4 [29.2 kB]
Get: 440 http://deb.debian.org/debian unstable/main armhf pkgconf armhf 1.8.1-4 [26.1 kB]
Get: 441 http://deb.debian.org/debian unstable/main armhf libnghttp2-dev armhf 1.64.0-1 [103 kB]
Get: 442 http://deb.debian.org/debian unstable/main armhf libpsl-dev armhf 0.21.2-1.1+b1 [76.8 kB]
Get: 443 http://deb.debian.org/debian unstable/main armhf libgmpxx4ldbl armhf 2:6.3.0+dfsg-3 [328 kB]
Get: 444 http://deb.debian.org/debian unstable/main armhf libgmp-dev armhf 2:6.3.0+dfsg-3 [592 kB]
Get: 445 http://deb.debian.org/debian unstable/main armhf libevent-2.1-7t64 armhf 2.1.12-stable-10+b1 [164 kB]
Get: 446 http://deb.debian.org/debian unstable/main armhf libunbound8 armhf 1.22.0-1 [539 kB]
Get: 447 http://deb.debian.org/debian unstable/main armhf libgnutls-dane0t64 armhf 3.8.8-2 [440 kB]
Get: 448 http://deb.debian.org/debian unstable/main armhf libgnutls-openssl27t64 armhf 3.8.8-2 [440 kB]
Get: 449 http://deb.debian.org/debian unstable/main armhf libp11-kit-dev armhf 0.25.5-3 [208 kB]
Get: 450 http://deb.debian.org/debian unstable/main armhf libtasn1-6-dev armhf 4.19.0-3+b3 [93.2 kB]
Get: 451 http://deb.debian.org/debian unstable/main armhf nettle-dev armhf 3.10-1+b1 [1313 kB]
Get: 452 http://deb.debian.org/debian unstable/main armhf libgnutls28-dev armhf 3.8.8-2 [1328 kB]
Get: 453 http://deb.debian.org/debian unstable/main armhf librtmp-dev armhf 2.4+20151223.gitfa8646d.1-2+b5 [63.6 kB]
Get: 454 http://deb.debian.org/debian unstable/main armhf libssh2-1-dev armhf 1.11.1-1 [378 kB]
Get: 455 http://deb.debian.org/debian unstable/main armhf libzstd-dev armhf 1.5.6+dfsg-1+b1 [327 kB]
Get: 456 http://deb.debian.org/debian unstable/main armhf libcurl4-openssl-dev armhf 8.11.1-1 [424 kB]
Get: 457 http://deb.debian.org/debian unstable/main armhf libhdf5-dev armhf 1.14.5+repack-1 [3092 kB]
Get: 458 http://deb.debian.org/debian unstable/main armhf libsuperlu7 armhf 7.0.0+dfsg1-2 [142 kB]
Get: 459 http://deb.debian.org/debian unstable/main armhf libsuperlu-dev armhf 7.0.0+dfsg1-2 [21.9 kB]
Get: 460 http://deb.debian.org/debian unstable/main armhf libarmadillo-dev armhf 1:14.2.1+dfsg-1 [414 kB]
Get: 461 http://deb.debian.org/debian unstable/main armhf libaspell15 armhf 0.60.8.1-2 [292 kB]
Get: 462 http://deb.debian.org/debian unstable/main armhf libva2 armhf 2.22.0-1+b1 [73.0 kB]
Get: 463 http://deb.debian.org/debian unstable/main armhf libva-drm2 armhf 2.22.0-1+b1 [18.1 kB]
Get: 464 http://deb.debian.org/debian unstable/main armhf libva-x11-2 armhf 2.22.0-1+b1 [21.7 kB]
Get: 465 http://deb.debian.org/debian unstable/main armhf libvdpau1 armhf 1.5-3+b1 [24.6 kB]
Get: 466 http://deb.debian.org/debian unstable/main armhf ocl-icd-libopencl1 armhf 2.3.2-1+b2 [37.3 kB]
Get: 467 http://deb.debian.org/debian unstable/main armhf libavutil59 armhf 7:7.1-3+b1 [373 kB]
Get: 468 http://deb.debian.org/debian unstable/main armhf libcodec2-1.2 armhf 1.2.0-2+b2 [8146 kB]
Get: 469 http://deb.debian.org/debian unstable/main armhf libgsm1 armhf 1.0.22-1+b2 [25.9 kB]
Get: 470 http://deb.debian.org/debian unstable/main armhf libhwy1t64 armhf 1.2.0-2+b1 [40.6 kB]
Get: 471 http://deb.debian.org/debian unstable/main armhf libimath-3-1-29t64 armhf 3.1.12-1+b1 [38.1 kB]
Get: 472 http://deb.debian.org/debian unstable/main armhf libopenexr-3-1-30 armhf 3.1.5-5.1+b3 [843 kB]
Get: 473 http://deb.debian.org/debian unstable/main armhf libjxl0.10 armhf 0.10.4-2 [950 kB]
Get: 474 http://deb.debian.org/debian unstable/main armhf libmp3lame0 armhf 3.100-6+b3 [344 kB]
Get: 475 http://deb.debian.org/debian unstable/main armhf libopenjp2-7 armhf 2.5.0-2+b4 [179 kB]
Get: 476 http://deb.debian.org/debian unstable/main armhf libopus0 armhf 1.5.2-2 [2801 kB]
Get: 477 http://deb.debian.org/debian unstable/main armhf librsvg2-2 armhf 2.59.2+dfsg-1 [1543 kB]
Get: 478 http://deb.debian.org/debian unstable/main armhf libshine3 armhf 3.1.1-2+b2 [20.9 kB]
Get: 479 http://deb.debian.org/debian unstable/main armhf libsnappy1v5 armhf 1.2.1-1+b1 [27.0 kB]
Get: 480 http://deb.debian.org/debian unstable/main armhf libspeex1 armhf 1.2.1-3 [47.3 kB]
Get: 481 http://deb.debian.org/debian unstable/main armhf libsoxr0 armhf 0.1.3-4+b2 [67.1 kB]
Get: 482 http://deb.debian.org/debian unstable/main armhf libswresample5 armhf 7:7.1-3+b1 [86.7 kB]
Get: 483 http://deb.debian.org/debian unstable/main armhf libogg0 armhf 1.3.5-3+b2 [21.9 kB]
Get: 484 http://deb.debian.org/debian unstable/main armhf libtheora0 armhf 1.1.1+dfsg.1-17 [130 kB]
Get: 485 http://deb.debian.org/debian unstable/main armhf libtwolame0 armhf 0.4.0-2+b2 [45.8 kB]
Get: 486 http://deb.debian.org/debian unstable/main armhf libvorbis0a armhf 1.3.7-2+b1 [79.8 kB]
Get: 487 http://deb.debian.org/debian unstable/main armhf libvorbisenc2 armhf 1.3.7-2+b1 [69.4 kB]
Get: 488 http://deb.debian.org/debian unstable/main armhf libvpx9 armhf 1.15.0-1 [1508 kB]
Get: 489 http://deb.debian.org/debian unstable/main armhf libwebpmux3 armhf 1.4.0-0.1+b1 [120 kB]
Get: 490 http://deb.debian.org/debian unstable/main armhf libx264-164 armhf 2:0.164.3108+git31e19f9-2 [429 kB]
Get: 491 http://deb.debian.org/debian unstable/main armhf libx265-209 armhf 3.6-3+b1 [613 kB]
Get: 492 http://deb.debian.org/debian unstable/main armhf libxvidcore4 armhf 2:1.3.7-1+b2 [195 kB]
Get: 493 http://deb.debian.org/debian unstable/main armhf libzvbi-common all 0.2.43-2 [71.2 kB]
Get: 494 http://deb.debian.org/debian unstable/main armhf libzvbi0t64 armhf 0.2.43-2 [247 kB]
Get: 495 http://deb.debian.org/debian unstable/main armhf libavcodec61 armhf 7:7.1-3+b1 [5239 kB]
Get: 496 http://deb.debian.org/debian unstable/main armhf libavutil-dev armhf 7:7.1-3+b1 [526 kB]
Get: 497 http://deb.debian.org/debian unstable/main armhf libswresample-dev armhf 7:7.1-3+b1 [94.9 kB]
Get: 498 http://deb.debian.org/debian unstable/main armhf libavcodec-dev armhf 7:7.1-3+b1 [5754 kB]
Get: 499 http://deb.debian.org/debian unstable/main armhf libudfread0 armhf 1.1.2-1+b2 [14.7 kB]
Get: 500 http://deb.debian.org/debian unstable/main armhf libbluray2 armhf 1:1.3.4-1+b2 [122 kB]
Get: 501 http://deb.debian.org/debian unstable/main armhf libchromaprint1 armhf 1.5.1-6 [34.7 kB]
Get: 502 http://deb.debian.org/debian unstable/main armhf libdvdread8t64 armhf 6.1.3-2 [79.3 kB]
Get: 503 http://deb.debian.org/debian unstable/main armhf libdvdnav4 armhf 6.1.1-3+b1 [37.7 kB]
Get: 504 http://deb.debian.org/debian unstable/main armhf libgme0 armhf 0.6.3-7+b2 [106 kB]
Get: 505 http://deb.debian.org/debian unstable/main armhf libmpg123-0t64 armhf 1.32.10-1 [135 kB]
Get: 506 http://deb.debian.org/debian unstable/main armhf libvorbisfile3 armhf 1.3.7-2+b1 [20.6 kB]
Get: 507 http://deb.debian.org/debian unstable/main armhf libopenmpt0t64 armhf 0.7.12-1 [727 kB]
Get: 508 http://deb.debian.org/debian unstable/main armhf librabbitmq4 armhf 0.15.0-1 [36.9 kB]
Get: 509 http://deb.debian.org/debian unstable/main armhf libcjson1 armhf 1.7.18-3+b1 [26.1 kB]
Get: 510 http://deb.debian.org/debian unstable/main armhf libmbedcrypto16 armhf 3.6.2-3 [320 kB]
Get: 511 http://deb.debian.org/debian unstable/main armhf librist4 armhf 0.2.11+dfsg-1 [66.0 kB]
Get: 512 http://deb.debian.org/debian unstable/main armhf libsrt1.5-gnutls armhf 1.5.4-1 [305 kB]
Get: 513 http://deb.debian.org/debian unstable/main armhf libssh-4 armhf 0.11.1-1 [179 kB]
Get: 514 http://deb.debian.org/debian unstable/main armhf libnorm1t64 armhf 1.5.9+dfsg-3.1+b1 [187 kB]
Get: 515 http://deb.debian.org/debian unstable/main armhf libpgm-5.3-0t64 armhf 5.3.128~dfsg-2.1+b1 [156 kB]
Get: 516 http://deb.debian.org/debian unstable/main armhf libsodium23 armhf 1.0.18-1+b2 [139 kB]
Get: 517 http://deb.debian.org/debian unstable/main armhf libzmq5 armhf 4.3.5-1+b3 [239 kB]
Get: 518 http://deb.debian.org/debian unstable/main armhf libavformat61 armhf 7:7.1-3+b1 [1122 kB]
Get: 519 http://deb.debian.org/debian unstable/main armhf libavformat-dev armhf 7:7.1-3+b1 [1327 kB]
Get: 520 http://deb.debian.org/debian unstable/main armhf libblosc1 armhf 1.21.5+ds-1+b2 [37.2 kB]
Get: 521 http://deb.debian.org/debian unstable/main armhf libblosc-dev armhf 1.21.5+ds-1+b2 [48.1 kB]
Get: 522 http://deb.debian.org/debian unstable/main armhf libboost1.83-dev armhf 1.83.0-4 [10.6 MB]
Get: 523 http://deb.debian.org/debian unstable/main armhf libboost-dev armhf 1.83.0.2+b2 [3832 B]
Get: 524 http://deb.debian.org/debian unstable/main armhf libbz2-dev armhf 1.0.8-6 [28.7 kB]
Get: 525 http://deb.debian.org/debian unstable/main armhf libcfitsio10t64 armhf 4.5.0-5 [525 kB]
Get: 526 http://deb.debian.org/debian unstable/main armhf libcfitsio-dev armhf 4.5.0-5 [602 kB]
Get: 527 http://deb.debian.org/debian unstable/main armhf libcommons-parent-java all 56-1 [10.8 kB]
Get: 528 http://deb.debian.org/debian unstable/main armhf libcommons-logging-java all 1.3.0-1 [68.6 kB]
Get: 529 http://deb.debian.org/debian unstable/main armhf libdeflate-dev armhf 1.22-1 [44.5 kB]
Get: 530 http://deb.debian.org/debian unstable/main armhf libdouble-conversion-dev armhf 3.3.0-1+b2 [60.5 kB]
Get: 531 http://deb.debian.org/debian unstable/main armhf pkg-config armhf 1.8.1-4 [14.0 kB]
Get: 532 http://deb.debian.org/debian unstable/main armhf libeigen3-dev all 3.4.0-4 [1041 kB]
Get: 533 http://deb.debian.org/debian unstable/main armhf libhunspell-1.7-0 armhf 1.7.2+really1.7.2-10+b3 [216 kB]
Get: 534 http://deb.debian.org/debian unstable/main armhf libenchant-2-2 armhf 2.8.2+dfsg1-1 [45.9 kB]
Get: 535 http://deb.debian.org/debian unstable/main armhf libexpat1-dev armhf 2.6.4-1 [140 kB]
Get: 536 http://deb.debian.org/debian unstable/main armhf libfftw3-double3 armhf 3.3.10-2+b1 [330 kB]
Get: 537 http://deb.debian.org/debian unstable/main armhf libfftw3-single3 armhf 3.3.10-2+b1 [520 kB]
Get: 538 http://deb.debian.org/debian unstable/main armhf libfftw3-bin armhf 3.3.10-2+b1 [41.7 kB]
Get: 539 http://deb.debian.org/debian unstable/main armhf libfftw3-dev armhf 3.3.10-2+b1 [835 kB]
Get: 540 http://deb.debian.org/debian unstable/main armhf libfontbox-java all 1:1.8.16-5 [211 kB]
Get: 541 http://deb.debian.org/debian unstable/main armhf libpng-dev armhf 1.6.44-3 [349 kB]
Get: 542 http://deb.debian.org/debian unstable/main armhf libfreetype-dev armhf 2.13.3+dfsg-1 [561 kB]
Get: 543 http://deb.debian.org/debian unstable/main armhf uuid-dev armhf 2.40.2-13 [45.7 kB]
Get: 544 http://deb.debian.org/debian unstable/main armhf libfontconfig-dev armhf 2.15.0-1.1+b1 [397 kB]
Get: 545 http://deb.debian.org/debian unstable/main armhf libfontconfig1-dev armhf 2.15.0-1.1+b1 [269 kB]
Get: 546 http://deb.debian.org/debian unstable/main armhf libfontenc1 armhf 1:1.1.8-1+b1 [20.8 kB]
Get: 547 http://deb.debian.org/debian unstable/main armhf libminizip1t64 armhf 1:1.3.dfsg+really1.3.1-1+b1 [50.9 kB]
Get: 548 http://deb.debian.org/debian unstable/main armhf libfreexl1 armhf 2.0.0-1+b3 [35.2 kB]
Get: 549 http://deb.debian.org/debian unstable/main armhf libminizip-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [59.2 kB]
Get: 550 http://deb.debian.org/debian unstable/main armhf libfreexl-dev armhf 2.0.0-1+b3 [37.7 kB]
Get: 551 http://deb.debian.org/debian unstable/main armhf libfyba0t64 armhf 4.1.1-11+b1 [100 kB]
Get: 552 http://deb.debian.org/debian unstable/main armhf libfyba-dev armhf 4.1.1-11+b1 [162 kB]
Get: 553 http://deb.debian.org/debian unstable/main armhf libgeos3.13.0 armhf 3.13.0-1 [873 kB]
Get: 554 http://deb.debian.org/debian unstable/main armhf libgeos-c1t64 armhf 3.13.0-1 [91.0 kB]
Get: 555 http://deb.debian.org/debian unstable/main armhf proj-data all 9.5.1-1 [6284 kB]
Get: 556 http://deb.debian.org/debian unstable/main armhf libproj25 armhf 9.5.1-1 [1204 kB]
Get: 557 http://deb.debian.org/debian unstable/main armhf libgeotiff5 armhf 1.7.3-1+b1 [60.6 kB]
Get: 558 http://deb.debian.org/debian unstable/main armhf libhdf4-0-alt armhf 4.3.0-1+b1 [230 kB]
Get: 559 http://deb.debian.org/debian unstable/main armhf libjson-c5 armhf 0.18+ds-1 [42.3 kB]
Get: 560 http://deb.debian.org/debian unstable/main armhf liburiparser1 armhf 0.9.8+dfsg-2 [37.9 kB]
Get: 561 http://deb.debian.org/debian unstable/main armhf libkmlbase1t64 armhf 1.3.0-12+b1 [42.4 kB]
Get: 562 http://deb.debian.org/debian unstable/main armhf libkmldom1t64 armhf 1.3.0-12+b1 [133 kB]
Get: 563 http://deb.debian.org/debian unstable/main armhf libkmlengine1t64 armhf 1.3.0-12+b1 [67.2 kB]
Get: 564 http://deb.debian.org/debian unstable/main armhf libnetcdf19t64 armhf 1:4.9.2-7+b1 [421 kB]
Get: 565 http://deb.debian.org/debian unstable/main armhf libodbc2 armhf 2.3.12-2 [131 kB]
Get: 566 http://deb.debian.org/debian unstable/main armhf unixodbc-common all 2.3.12-2 [8640 B]
Get: 567 http://deb.debian.org/debian unstable/main armhf libodbcinst2 armhf 2.3.12-2 [29.0 kB]
Get: 568 http://deb.debian.org/debian unstable/main armhf libogdi4.1 armhf 4.1.1+ds-5 [180 kB]
Get: 569 http://deb.debian.org/debian unstable/main armhf libgpgme11t64 armhf 1.24.1-2 [322 kB]
Get: 570 http://deb.debian.org/debian unstable/main armhf libgpgmepp6t64 armhf 1.24.1-2 [321 kB]
Get: 571 http://deb.debian.org/debian unstable/main armhf libpoppler140 armhf 24.08.0-3 [1791 kB]
Get: 572 http://deb.debian.org/debian unstable/main armhf libpq5 armhf 17.2-1 [206 kB]
Get: 573 http://deb.debian.org/debian unstable/main armhf libqhull-r8.0 armhf 2020.2-6+b2 [220 kB]
Get: 574 http://deb.debian.org/debian unstable/main armhf librttopo1 armhf 1.1.0-3+b2 [148 kB]
Get: 575 http://deb.debian.org/debian unstable/main armhf libspatialite8t64 armhf 5.1.0-3+b2 [1732 kB]
Get: 576 http://deb.debian.org/debian unstable/main armhf libxerces-c3.2t64 armhf 3.2.4+debian-1.3+b1 [749 kB]
Get: 577 http://deb.debian.org/debian unstable/main armhf libgdal35 armhf 3.9.3+dfsg-1+b2 [7850 kB]
Get: 578 http://deb.debian.org/debian unstable/main armhf libgeos-dev armhf 3.13.0-1 [58.2 kB]
Get: 579 http://deb.debian.org/debian unstable/main armhf libsqlite3-dev armhf 3.46.1-1 [1003 kB]
Get: 580 http://deb.debian.org/debian unstable/main armhf libjbig-dev armhf 2.1-6.1+b2 [27.8 kB]
Get: 581 http://deb.debian.org/debian unstable/main armhf liblzma-dev armhf 5.6.3-1+b1 [304 kB]
Get: 582 http://deb.debian.org/debian unstable/main armhf libwebpdemux2 armhf 1.4.0-0.1+b1 [110 kB]
Get: 583 http://deb.debian.org/debian unstable/main armhf libwebpdecoder3 armhf 1.4.0-0.1+b1 [182 kB]
Get: 584 http://deb.debian.org/debian unstable/main armhf libsharpyuv-dev armhf 1.4.0-0.1+b1 [114 kB]
Get: 585 http://deb.debian.org/debian unstable/main armhf libwebp-dev armhf 1.4.0-0.1+b1 [390 kB]
Get: 586 http://deb.debian.org/debian unstable/main armhf libtiffxx6 armhf 4.5.1+git230720-5 [149 kB]
Get: 587 http://deb.debian.org/debian unstable/main armhf liblerc-dev armhf 4.0.0+ds-5 [163 kB]
Get: 588 http://deb.debian.org/debian unstable/main armhf libtiff-dev armhf 4.5.1+git230720-5 [442 kB]
Get: 589 http://deb.debian.org/debian unstable/main armhf libproj-dev armhf 9.5.1-1 [135 kB]
Get: 590 http://deb.debian.org/debian unstable/main armhf libgeotiff-dev armhf 1.7.3-1+b1 [91.9 kB]
Get: 591 http://deb.debian.org/debian unstable/main armhf libgif-dev armhf 5.2.2-1+b1 [44.2 kB]
Get: 592 http://deb.debian.org/debian unstable/main armhf libicu-dev armhf 72.1-5+b1 [10.1 MB]
Get: 593 http://deb.debian.org/debian unstable/main armhf libxml2-dev armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [723 kB]
Get: 594 http://deb.debian.org/debian unstable/main armhf libnetcdf-dev armhf 1:4.9.2-7+b1 [104 kB]
Get: 595 http://deb.debian.org/debian unstable/main armhf libhdf4-alt-dev armhf 4.3.0-1+b1 [285 kB]
Get: 596 http://deb.debian.org/debian unstable/main armhf libheif-dev armhf 1.19.3-1 [50.8 kB]
Get: 597 http://deb.debian.org/debian unstable/main armhf libjson-c-dev armhf 0.18+ds-1 [70.4 kB]
Get: 598 http://deb.debian.org/debian unstable/main armhf libkmlconvenience1t64 armhf 1.3.0-12+b1 [42.8 kB]
Get: 599 http://deb.debian.org/debian unstable/main armhf libkmlregionator1t64 armhf 1.3.0-12+b1 [18.9 kB]
Get: 600 http://deb.debian.org/debian unstable/main armhf libkmlxsd1t64 armhf 1.3.0-12+b1 [27.3 kB]
Get: 601 http://deb.debian.org/debian unstable/main armhf liburiparser-dev armhf 0.9.8+dfsg-2 [26.7 kB]
Get: 602 http://deb.debian.org/debian unstable/main armhf libkml-dev armhf 1.3.0-12+b1 [662 kB]
Get: 603 http://deb.debian.org/debian unstable/main armhf libltdl-dev armhf 2.4.7-8 [162 kB]
Get: 604 http://deb.debian.org/debian unstable/main armhf liblz4-dev armhf 1.9.4-3+b1 [71.5 kB]
Get: 605 http://deb.debian.org/debian unstable/main armhf libtirpc-dev armhf 1.3.4+ds-1.3+b1 [180 kB]
Get: 606 http://deb.debian.org/debian unstable/main armhf libogdi-dev armhf 4.1.1+ds-5 [35.5 kB]
Get: 607 http://deb.debian.org/debian unstable/main armhf libopenjp2-7-dev armhf 2.5.0-2+b4 [251 kB]
Get: 608 http://deb.debian.org/debian unstable/main armhf libpcre2-32-0 armhf 10.44-5 [216 kB]
Get: 609 http://deb.debian.org/debian unstable/main armhf libpcre2-posix3 armhf 10.44-5 [59.8 kB]
Get: 610 http://deb.debian.org/debian unstable/main armhf libpcre2-dev armhf 10.44-5 [702 kB]
Get: 611 http://deb.debian.org/debian unstable/main armhf libpoppler-dev armhf 24.08.0-3 [8488 B]
Get: 612 http://deb.debian.org/debian unstable/main armhf libpoppler-private-dev armhf 24.08.0-3 [193 kB]
Get: 613 http://deb.debian.org/debian unstable/main armhf libpq-dev armhf 17.2-1 [135 kB]
Get: 614 http://deb.debian.org/debian unstable/main armhf libqhull8.0 armhf 2020.2-6+b2 [222 kB]
Get: 615 http://deb.debian.org/debian unstable/main armhf libqhullcpp8.0 armhf 2020.2-6+b2 [103 kB]
Get: 616 http://deb.debian.org/debian unstable/main armhf libqhull-dev armhf 2020.2-6+b2 [471 kB]
Get: 617 http://deb.debian.org/debian unstable/main armhf librttopo-dev armhf 1.1.0-3+b2 [190 kB]
Get: 618 http://deb.debian.org/debian unstable/main armhf libspatialite-dev armhf 5.1.0-3+b2 [2017 kB]
Get: 619 http://deb.debian.org/debian unstable/main armhf libxerces-c-dev armhf 3.2.4+debian-1.3+b1 [1555 kB]
Get: 620 http://deb.debian.org/debian unstable/main armhf libodbccr2 armhf 2.3.12-2 [15.0 kB]
Get: 621 http://deb.debian.org/debian unstable/main armhf unixodbc-dev armhf 2.3.12-2 [210 kB]
Get: 622 http://deb.debian.org/debian unstable/main armhf libgdal-dev armhf 3.9.3+dfsg-1+b2 [537 kB]
Get: 623 http://deb.debian.org/debian unstable/main armhf libgl2ps1.4 armhf 1.4.2+dfsg1-2 [36.5 kB]
Get: 624 http://deb.debian.org/debian unstable/main armhf libgl2ps-dev armhf 1.4.2+dfsg1-2 [24.8 kB]
Get: 625 http://deb.debian.org/debian unstable/main armhf libglew2.2 armhf 2.2.0-4+b2 [166 kB]
Get: 626 http://deb.debian.org/debian unstable/main armhf libopengl0 armhf 1.7.0-1+b2 [32.1 kB]
Get: 627 http://deb.debian.org/debian unstable/main armhf libglu1-mesa armhf 9.0.2-1.1+b2 [141 kB]
Get: 628 http://deb.debian.org/debian unstable/main armhf libopengl-dev armhf 1.7.0-1+b2 [5372 B]
Get: 629 http://deb.debian.org/debian unstable/main armhf libglu1-mesa-dev armhf 9.0.2-1.1+b2 [181 kB]
Get: 630 http://deb.debian.org/debian unstable/main armhf libglew-dev armhf 2.2.0-4+b2 [258 kB]
Get: 631 http://deb.debian.org/debian unstable/main armhf libmpich12 armhf 4.2.1-5 [1417 kB]
Get: 632 http://deb.debian.org/debian unstable/main armhf libhdf5-mpich-310 armhf 1.14.5+repack-1 [1330 kB]
Get: 633 http://deb.debian.org/debian unstable/main armhf libhdf5-mpich-fortran-310 armhf 1.14.5+repack-1 [103 kB]
Get: 634 http://deb.debian.org/debian unstable/main armhf libhdf5-mpich-hl-310 armhf 1.14.5+repack-1 [67.0 kB]
Get: 635 http://deb.debian.org/debian unstable/main armhf libhdf5-mpich-hl-fortran-310 armhf 1.14.5+repack-1 [37.8 kB]
Get: 636 http://deb.debian.org/debian unstable/main armhf libhdf5-mpich-cpp-310 armhf 1.14.5+repack-1 [124 kB]
Get: 637 http://deb.debian.org/debian unstable/main armhf libhdf5-mpich-hl-cpp-310 armhf 1.14.5+repack-1 [23.8 kB]
Get: 638 http://deb.debian.org/debian unstable/main armhf libnuma1 armhf 2.0.18-1+b1 [18.9 kB]
Get: 639 http://deb.debian.org/debian unstable/main armhf libnuma-dev armhf 2.0.18-1+b1 [34.6 kB]
Get: 640 http://deb.debian.org/debian unstable/main armhf libhwloc-dev armhf 2.11.2-1 [226 kB]
Get: 641 http://deb.debian.org/debian unstable/main armhf libslurm42t64 armhf 24.11.0-2 [693 kB]
Get: 642 http://deb.debian.org/debian unstable/main armhf mpich armhf 4.2.1-5 [203 kB]
Get: 643 http://deb.debian.org/debian unstable/main armhf libmpich-dev armhf 4.2.1-5 [2269 kB]
Get: 644 http://deb.debian.org/debian unstable/main armhf libhdf5-mpich-dev armhf 1.14.5+repack-1 [3207 kB]
Get: 645 http://deb.debian.org/debian unstable/main armhf mpi-default-dev armhf 1.18 [3372 B]
Get: 646 http://deb.debian.org/debian unstable/main armhf libhdf5-mpi-dev armhf 1.14.5+repack-1 [18.5 kB]
Get: 647 http://deb.debian.org/debian unstable/main armhf libice-dev armhf 2:1.1.1-1 [69.0 kB]
Get: 648 http://deb.debian.org/debian unstable/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 649 http://deb.debian.org/debian unstable/main armhf libjs-mathjax all 2.7.9+dfsg-1 [5667 kB]
Get: 650 http://deb.debian.org/debian unstable/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get: 651 http://deb.debian.org/debian unstable/main armhf libjs-sphinxdoc all 8.1.3-3 [30.4 kB]
Get: 652 http://deb.debian.org/debian unstable/main armhf libjson-perl all 4.10000-1 [87.5 kB]
Get: 653 http://deb.debian.org/debian unstable/main armhf libjsoncpp-dev armhf 1.9.6-3 [25.0 kB]
Get: 654 http://deb.debian.org/debian unstable/main armhf libkim-api2 armhf 2.3.0-1+b2 [518 kB]
Get: 655 http://deb.debian.org/debian unstable/main armhf libkim-api-dev armhf 2.3.0-1+b2 [105 kB]
Get: 656 http://deb.debian.org/debian unstable/main armhf libogg-dev armhf 1.3.5-3+b2 [199 kB]
Get: 657 http://deb.debian.org/debian unstable/main armhf libpdfbox-java all 1:1.8.16-5 [5527 kB]
Get: 658 http://deb.debian.org/debian unstable/main armhf libpython3.12t64 armhf 3.12.8-3 [1849 kB]
Get: 659 http://deb.debian.org/debian unstable/main armhf libpython3.12-dev armhf 3.12.8-3 [3812 kB]
Get: 660 http://deb.debian.org/debian unstable/main armhf libpython3-dev armhf 3.12.8-1 [10.1 kB]
Get: 661 http://deb.debian.org/debian unstable/main armhf libpython3.13-stdlib armhf 3.13.1-2 [1846 kB]
Get: 662 http://deb.debian.org/debian unstable/main armhf libpython3.13 armhf 3.13.1-2 [1870 kB]
Get: 663 http://deb.debian.org/debian unstable/main armhf libpython3.13-dev armhf 3.13.1-2 [3801 kB]
Get: 664 http://deb.debian.org/debian unstable/main armhf libpython3-all-dev armhf 3.12.8-1 [1068 B]
Get: 665 http://deb.debian.org/debian unstable/main armhf libqt5designer5 armhf 5.15.15-4 [2652 kB]
Get: 666 http://deb.debian.org/debian unstable/main armhf libqt5designercomponents5 armhf 5.15.15-4 [649 kB]
Get: 667 http://deb.debian.org/debian unstable/main armhf libqt5help5 armhf 5.15.15-4 [131 kB]
Get: 668 http://deb.debian.org/debian unstable/main armhf libqt5opengl5t64 armhf 5.15.15+dfsg-2 [128 kB]
Get: 669 http://deb.debian.org/debian unstable/main armhf libqt5opengl5-dev armhf 5.15.15+dfsg-2 [51.4 kB]
Get: 670 http://deb.debian.org/debian unstable/main armhf libqt5sql5-sqlite armhf 5.15.15+dfsg-2 [54.9 kB]
Get: 671 http://deb.debian.org/debian unstable/main armhf libsm-dev armhf 2:1.2.4-1 [36.7 kB]
Get: 672 http://deb.debian.org/debian unstable/main armhf libswscale8 armhf 7:7.1-3+b1 [183 kB]
Get: 673 http://deb.debian.org/debian unstable/main armhf libswscale-dev armhf 7:7.1-3+b1 [199 kB]
Get: 674 http://deb.debian.org/debian unstable/main armhf libsymspg2 armhf 2.5.0-1+b1 [184 kB]
Get: 675 http://deb.debian.org/debian unstable/main armhf libsymspg-dev armhf 2.5.0-1+b1 [37.2 kB]
Get: 676 http://deb.debian.org/debian unstable/main armhf libtbbmalloc2 armhf 2021.12.0-1 [42.4 kB]
Get: 677 http://deb.debian.org/debian unstable/main armhf libtbbbind-2-5 armhf 2021.12.0-1 [13.0 kB]
Get: 678 http://deb.debian.org/debian unstable/main armhf libtbb12 armhf 2021.12.0-1 [74.1 kB]
Get: 679 http://deb.debian.org/debian unstable/main armhf libtbb-dev armhf 2021.12.0-1 [193 kB]
Get: 680 http://deb.debian.org/debian unstable/main armhf libtcl8.6 armhf 8.6.15+dfsg-2 [934 kB]
Get: 681 http://deb.debian.org/debian unstable/main armhf libtheora-dev armhf 1.1.1+dfsg.1-17 [152 kB]
Get: 682 http://deb.debian.org/debian unstable/main armhf libxss1 armhf 1:1.2.3-1+b2 [16.4 kB]
Get: 683 http://deb.debian.org/debian unstable/main armhf libtk8.6 armhf 8.6.15-1 [697 kB]
Get: 684 http://deb.debian.org/debian unstable/main armhf libutfcpp-dev all 4.0.5-1 [12.9 kB]
Get: 685 http://deb.debian.org/debian unstable/main armhf libvoro++1 armhf 0.5+revert-to-0.4.6+dfsg1-1 [103 kB]
Get: 686 http://deb.debian.org/debian unstable/main armhf libvtk9.3 armhf 9.3.0+dfsg1-1.1+b2 [19.4 MB]
Get: 687 http://deb.debian.org/debian unstable/main armhf libvtk9.3-qt armhf 9.3.0+dfsg1-1.1+b2 [150 kB]
Get: 688 http://deb.debian.org/debian unstable/main armhf libvtk9-java armhf 9.3.0+dfsg1-1.1+b2 [5986 kB]
Get: 689 http://deb.debian.org/debian unstable/main armhf libxrender-dev armhf 1:0.9.10-1.1+b3 [33.0 kB]
Get: 690 http://deb.debian.org/debian unstable/main armhf libxft-dev armhf 2.3.6-1+b3 [65.8 kB]
Get: 691 http://deb.debian.org/debian unstable/main armhf libxss-dev armhf 1:1.2.3-1+b2 [22.2 kB]
Get: 692 http://deb.debian.org/debian unstable/main armhf libxt-dev armhf 1:1.2.1-1.2+b1 [386 kB]
Get: 693 http://deb.debian.org/debian unstable/main armhf mpi-default-bin armhf 1.18 [2576 B]
Get: 694 http://deb.debian.org/debian unstable/main armhf python3-mpi4py armhf 4.0.1-6 [816 kB]
Get: 695 http://deb.debian.org/debian unstable/main armhf python3-vtk9 armhf 9.3.0+dfsg1-1.1+b2 [6252 kB]
Get: 696 http://deb.debian.org/debian unstable/main armhf tcl8.6 armhf 8.6.15+dfsg-2 [120 kB]
Get: 697 http://deb.debian.org/debian unstable/main armhf tcl8.6-dev armhf 8.6.15+dfsg-2 [947 kB]
Get: 698 http://deb.debian.org/debian unstable/main armhf tcl armhf 8.6.14 [4028 B]
Get: 699 http://deb.debian.org/debian unstable/main armhf tcl-dev armhf 8.6.14 [6572 B]
Get: 700 http://deb.debian.org/debian unstable/main armhf tk8.6 armhf 8.6.15-1 [69.5 kB]
Get: 701 http://deb.debian.org/debian unstable/main armhf tk8.6-dev armhf 8.6.15-1 [724 kB]
Get: 702 http://deb.debian.org/debian unstable/main armhf tk armhf 8.6.14 [4072 B]
Get: 703 http://deb.debian.org/debian unstable/main armhf tk-dev armhf 8.6.14 [3896 B]
Get: 704 http://deb.debian.org/debian unstable/main armhf vtk9 armhf 9.3.0+dfsg1-1.1+b2 [19.0 kB]
Get: 705 http://deb.debian.org/debian unstable/main armhf libvtk9-dev armhf 9.3.0+dfsg1-1.1+b2 [3052 kB]
Get: 706 http://deb.debian.org/debian unstable/main armhf qdoc-qt5 armhf 5.15.15-4 [517 kB]
Get: 707 http://deb.debian.org/debian unstable/main armhf qhelpgenerator-qt5 armhf 5.15.15-4 [53.1 kB]
Get: 708 http://deb.debian.org/debian unstable/main armhf qt5-assistant armhf 5.15.15-4 [330 kB]
Get: 709 http://deb.debian.org/debian unstable/main armhf qtattributionsscanner-qt5 armhf 5.15.15-4 [29.8 kB]
Get: 710 http://deb.debian.org/debian unstable/main armhf qttools5-dev-tools armhf 5.15.15-4 [922 kB]
Get: 711 http://deb.debian.org/debian unstable/main armhf qttools5-dev armhf 5.15.15-4 [178 kB]
Get: 712 http://deb.debian.org/debian unstable/main armhf qttools5-private-dev armhf 5.15.15-4 [74.0 kB]
Get: 713 http://deb.debian.org/debian unstable/main armhf libvtk9-qt-dev armhf 9.3.0+dfsg1-1.1+b2 [32.4 kB]
Get: 714 http://deb.debian.org/debian unstable/main armhf opencl-c-headers all 3.0~2024.10.24-2 [46.8 kB]
Get: 715 http://deb.debian.org/debian unstable/main armhf opencl-clhpp-headers all 3.0~2024.10.24-2 [50.7 kB]
Get: 716 http://deb.debian.org/debian unstable/main armhf ocl-icd-opencl-dev armhf 2.3.2-1+b2 [8672 B]
Get: 717 http://deb.debian.org/debian unstable/main armhf preview-latex-style all 13.2-1 [350 kB]
Get: 718 http://deb.debian.org/debian unstable/main armhf python3-packaging all 24.2-1 [55.3 kB]
Get: 719 http://deb.debian.org/debian unstable/main armhf python3-pyproject-hooks all 1.2.0-1 [11.7 kB]
Get: 720 http://deb.debian.org/debian unstable/main armhf python3-toml all 0.10.2-1 [16.2 kB]
Get: 721 http://deb.debian.org/debian unstable/main armhf python3-wheel all 0.45.1-1 [56.7 kB]
Get: 722 http://deb.debian.org/debian unstable/main armhf python3-build all 1.2.2-1 [36.0 kB]
Get: 723 http://deb.debian.org/debian unstable/main armhf python3-installer all 0.7.0+dfsg1-3 [18.6 kB]
Get: 724 http://deb.debian.org/debian unstable/main armhf pybuild-plugin-pyproject all 6.20241217 [11.5 kB]
Get: 725 http://deb.debian.org/debian unstable/main armhf python-babel-localedata all 2.16.0-1 [5696 kB]
Get: 726 http://deb.debian.org/debian unstable/main armhf python3-alabaster all 0.7.16-0.1 [27.9 kB]
Get: 727 http://deb.debian.org/debian unstable/main armhf python3.13 armhf 3.13.1-2 [740 kB]
Get: 728 http://deb.debian.org/debian unstable/main armhf python3-all armhf 3.12.8-1 [1048 B]
Get: 729 http://deb.debian.org/debian unstable/main armhf python3.12-dev armhf 3.12.8-3 [506 kB]
Get: 730 http://deb.debian.org/debian unstable/main armhf python3-dev armhf 3.12.8-1 [26.1 kB]
Get: 731 http://deb.debian.org/debian unstable/main armhf python3.13-dev armhf 3.13.1-2 [505 kB]
Get: 732 http://deb.debian.org/debian unstable/main armhf python3-all-dev armhf 3.12.8-1 [1068 B]
Get: 733 http://deb.debian.org/debian unstable/main armhf python3-babel all 2.16.0-1 [114 kB]
Get: 734 http://deb.debian.org/debian unstable/main armhf python3-roman all 4.2-1 [10.4 kB]
Get: 735 http://deb.debian.org/debian unstable/main armhf python3-docutils all 0.21.2+dfsg-2 [403 kB]
Get: 736 http://deb.debian.org/debian unstable/main armhf python3-defusedxml all 0.7.1-3 [43.4 kB]
Get: 737 http://deb.debian.org/debian unstable/main armhf sphinx-common all 8.1.3-3 [617 kB]
Get: 738 http://deb.debian.org/debian unstable/main armhf python3-imagesize all 1.4.1-1 [6688 B]
Get: 739 http://deb.debian.org/debian unstable/main armhf python3-markupsafe armhf 2.1.5-1+b2 [13.4 kB]
Get: 740 http://deb.debian.org/debian unstable/main armhf python3-jinja2 all 3.1.3-1.1 [120 kB]
Get: 741 http://deb.debian.org/debian unstable/main armhf python3-pygments all 2.18.0+dfsg-1 [836 kB]
Get: 742 http://deb.debian.org/debian unstable/main armhf python3-certifi all 2024.8.30+dfsg-1 [9576 B]
Get: 743 http://deb.debian.org/debian unstable/main armhf python3-charset-normalizer armhf 3.4.0-1+b1 [126 kB]
Get: 744 http://deb.debian.org/debian unstable/main armhf python3-idna all 3.8-2 [41.6 kB]
Get: 745 http://deb.debian.org/debian unstable/main armhf python3-urllib3 all 2.2.3-4 [112 kB]
Get: 746 http://deb.debian.org/debian unstable/main armhf python3-chardet all 5.2.0+dfsg-1 [107 kB]
Get: 747 http://deb.debian.org/debian unstable/main armhf python3-requests all 2.32.3+dfsg-1 [71.9 kB]
Get: 748 http://deb.debian.org/debian unstable/main armhf python3-snowballstemmer all 2.2.0-4 [58.0 kB]
Get: 749 http://deb.debian.org/debian unstable/main armhf python3-sphinx all 8.1.3-3 [468 kB]
Get: 750 http://deb.debian.org/debian unstable/main armhf python3-breathe all 4.35.0-3 [78.2 kB]
Get: 751 http://deb.debian.org/debian unstable/main armhf python3-enchant all 3.2.2-1 [39.2 kB]
Get: 752 http://deb.debian.org/debian unstable/main armhf python3-pip-whl all 24.3.1+dfsg-1 [1501 kB]
Get: 753 http://deb.debian.org/debian unstable/main armhf python3-setuptools-whl all 75.6.0-1 [1239 kB]
Get: 754 http://deb.debian.org/debian unstable/main armhf python3-sphinx-tabs all 3.4.7-1 [14.7 kB]
Get: 755 http://deb.debian.org/debian unstable/main armhf python3-sphinxcontrib.jquery all 4.1-5 [7348 B]
Get: 756 http://deb.debian.org/debian unstable/main armhf python3-sphinxcontrib.spelling all 7.7.0-1 [34.3 kB]
Get: 757 http://deb.debian.org/debian unstable/main armhf python3.12-venv armhf 3.12.8-3 [5836 B]
Get: 758 http://deb.debian.org/debian unstable/main armhf python3-venv armhf 3.12.8-1 [1176 B]
Get: 759 http://deb.debian.org/debian unstable/main armhf sphinx-rtd-theme-common all 3.0.2+dfsg-1 [1023 kB]
Get: 760 http://deb.debian.org/debian unstable/main armhf xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get: 761 http://deb.debian.org/debian unstable/main armhf xfonts-utils armhf 1:7.7+7 [84.2 kB]
Get: 762 http://deb.debian.org/debian unstable/main armhf tex-gyre all 20180621-6 [6209 kB]
Get: 763 http://deb.debian.org/debian unstable/main armhf texlive-fonts-recommended all 2024.20241115-1 [4991 kB]
Get: 764 http://deb.debian.org/debian unstable/main armhf texlive-latex-recommended all 2024.20241115-1 [8757 kB]
Get: 765 http://deb.debian.org/debian unstable/main armhf texlive-pictures all 2024.20241115-1 [17.0 MB]
Get: 766 http://deb.debian.org/debian unstable/main armhf texlive-latex-extra all 2024.20241115-1 [24.6 MB]
Get: 767 http://deb.debian.org/debian unstable/main armhf voro++-dev armhf 0.5+revert-to-0.4.6+dfsg1-1 [136 kB]
Fetched 647 MB in 44s (14.7 MB/s)
Preconfiguring packages ...
Selecting previously unselected package libapparmor1:armhf.
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(Reading database ... 19572 files and directories currently installed.)
Preparing to unpack .../libapparmor1_3.1.7-1+b3_armhf.deb ...
Unpacking libapparmor1:armhf (3.1.7-1+b3) ...
Selecting previously unselected package libsystemd-shared:armhf.
Preparing to unpack .../libsystemd-shared_257.1-5_armhf.deb ...
Unpacking libsystemd-shared:armhf (257.1-5) ...
Selecting previously unselected package systemd.
Preparing to unpack .../systemd_257.1-5_armhf.deb ...
Unpacking systemd (257.1-5) ...
Setting up libapparmor1:armhf (3.1.7-1+b3) ...
Setting up libsystemd-shared:armhf (257.1-5) ...
Setting up systemd (257.1-5) ...
Created symlink '/etc/systemd/system/getty.target.wants/getty@tty1.service' -> '/usr/lib/systemd/system/getty@.service'.
Created symlink '/etc/systemd/system/multi-user.target.wants/remote-fs.target' -> '/usr/lib/systemd/system/remote-fs.target'.
Created symlink '/etc/systemd/system/sysinit.target.wants/systemd-pstore.service' -> '/usr/lib/systemd/system/systemd-pstore.service'.
Initializing machine ID from random generator.
Creating group 'systemd-journal' with GID 999.
Creating group 'systemd-network' with GID 998.
Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998.
[0;1;39m/usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring.[0m
Selecting previously unselected package systemd-sysv.
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(Reading database ... 20528 files and directories currently installed.)
Preparing to unpack .../000-systemd-sysv_257.1-5_armhf.deb ...
Unpacking systemd-sysv (257.1-5) ...
Selecting previously unselected package libdbus-1-3:armhf.
Preparing to unpack .../001-libdbus-1-3_1.16.0-1_armhf.deb ...
Unpacking libdbus-1-3:armhf (1.16.0-1) ...
Selecting previously unselected package dbus-bin.
Preparing to unpack .../002-dbus-bin_1.16.0-1_armhf.deb ...
Unpacking dbus-bin (1.16.0-1) ...
Selecting previously unselected package dbus-session-bus-common.
Preparing to unpack .../003-dbus-session-bus-common_1.16.0-1_all.deb ...
Unpacking dbus-session-bus-common (1.16.0-1) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../004-libexpat1_2.6.4-1_armhf.deb ...
Unpacking libexpat1:armhf (2.6.4-1) ...
Selecting previously unselected package dbus-daemon.
Preparing to unpack .../005-dbus-daemon_1.16.0-1_armhf.deb ...
Unpacking dbus-daemon (1.16.0-1) ...
Selecting previously unselected package dbus-system-bus-common.
Preparing to unpack .../006-dbus-system-bus-common_1.16.0-1_all.deb ...
Unpacking dbus-system-bus-common (1.16.0-1) ...
Selecting previously unselected package dbus.
Preparing to unpack .../007-dbus_1.16.0-1_armhf.deb ...
Unpacking dbus (1.16.0-1) ...
Selecting previously unselected package fonts-lato.
Preparing to unpack .../008-fonts-lato_2.015-1_all.deb ...
Unpacking fonts-lato (2.015-1) ...
Selecting previously unselected package libglvnd0:armhf.
Preparing to unpack .../009-libglvnd0_1.7.0-1+b2_armhf.deb ...
Unpacking libglvnd0:armhf (1.7.0-1+b2) ...
Selecting previously unselected package libdrm-common.
Preparing to unpack .../010-libdrm-common_2.4.123-1_all.deb ...
Unpacking libdrm-common (2.4.123-1) ...
Selecting previously unselected package libdrm2:armhf.
Preparing to unpack .../011-libdrm2_2.4.123-1_armhf.deb ...
Unpacking libdrm2:armhf (2.4.123-1) ...
Selecting previously unselected package libffi8:armhf.
Preparing to unpack .../012-libffi8_3.4.6-1_armhf.deb ...
Unpacking libffi8:armhf (3.4.6-1) ...
Selecting previously unselected package libwayland-server0:armhf.
Preparing to unpack .../013-libwayland-server0_1.23.0-1+b1_armhf.deb ...
Unpacking libwayland-server0:armhf (1.23.0-1+b1) ...
Selecting previously unselected package libxau6:armhf.
Preparing to unpack .../014-libxau6_1%3a1.0.11-1_armhf.deb ...
Unpacking libxau6:armhf (1:1.0.11-1) ...
Selecting previously unselected package libxdmcp6:armhf.
Preparing to unpack .../015-libxdmcp6_1%3a1.1.5-1_armhf.deb ...
Unpacking libxdmcp6:armhf (1:1.1.5-1) ...
Selecting previously unselected package libxcb1:armhf.
Preparing to unpack .../016-libxcb1_1.17.0-2+b1_armhf.deb ...
Unpacking libxcb1:armhf (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-randr0:armhf.
Preparing to unpack .../017-libxcb-randr0_1.17.0-2+b1_armhf.deb ...
Unpacking libxcb-randr0:armhf (1.17.0-2+b1) ...
Selecting previously unselected package libdrm-amdgpu1:armhf.
Preparing to unpack .../018-libdrm-amdgpu1_2.4.123-1_armhf.deb ...
Unpacking libdrm-amdgpu1:armhf (2.4.123-1) ...
Selecting previously unselected package libdrm-radeon1:armhf.
Preparing to unpack .../019-libdrm-radeon1_2.4.123-1_armhf.deb ...
Unpacking libdrm-radeon1:armhf (2.4.123-1) ...
Selecting previously unselected package libelf1t64:armhf.
Preparing to unpack .../020-libelf1t64_0.192-4_armhf.deb ...
Unpacking libelf1t64:armhf (0.192-4) ...
Selecting previously unselected package libglapi-mesa:armhf.
Preparing to unpack .../021-libglapi-mesa_24.2.8-1_armhf.deb ...
Unpacking libglapi-mesa:armhf (24.2.8-1) ...
Selecting previously unselected package libedit2:armhf.
Preparing to unpack .../022-libedit2_3.1-20240808-1_armhf.deb ...
Unpacking libedit2:armhf (3.1-20240808-1) ...
Selecting previously unselected package libicu72:armhf.
Preparing to unpack .../023-libicu72_72.1-5+b1_armhf.deb ...
Unpacking libicu72:armhf (72.1-5+b1) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../024-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_armhf.deb ...
Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Selecting previously unselected package libz3-4:armhf.
Preparing to unpack .../025-libz3-4_4.13.3-1_armhf.deb ...
Unpacking libz3-4:armhf (4.13.3-1) ...
Selecting previously unselected package libllvm19:armhf.
Preparing to unpack .../026-libllvm19_1%3a19.1.6-1_armhf.deb ...
Unpacking libllvm19:armhf (1:19.1.6-1) ...
Selecting previously unselected package libsensors-config.
Preparing to unpack .../027-libsensors-config_1%3a3.6.0-10_all.deb ...
Unpacking libsensors-config (1:3.6.0-10) ...
Selecting previously unselected package libsensors5:armhf.
Preparing to unpack .../028-libsensors5_1%3a3.6.0-10+b1_armhf.deb ...
Unpacking libsensors5:armhf (1:3.6.0-10+b1) ...
Selecting previously unselected package libx11-data.
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Unpacking libx11-data (2:1.8.10-2) ...
Selecting previously unselected package libx11-6:armhf.
Preparing to unpack .../030-libx11-6_2%3a1.8.10-2_armhf.deb ...
Unpacking libx11-6:armhf (2:1.8.10-2) ...
Selecting previously unselected package libx11-xcb1:armhf.
Preparing to unpack .../031-libx11-xcb1_2%3a1.8.10-2_armhf.deb ...
Unpacking libx11-xcb1:armhf (2:1.8.10-2) ...
Selecting previously unselected package libxcb-dri2-0:armhf.
Preparing to unpack .../032-libxcb-dri2-0_1.17.0-2+b1_armhf.deb ...
Unpacking libxcb-dri2-0:armhf (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-dri3-0:armhf.
Preparing to unpack .../033-libxcb-dri3-0_1.17.0-2+b1_armhf.deb ...
Unpacking libxcb-dri3-0:armhf (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-present0:armhf.
Preparing to unpack .../034-libxcb-present0_1.17.0-2+b1_armhf.deb ...
Unpacking libxcb-present0:armhf (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-sync1:armhf.
Preparing to unpack .../035-libxcb-sync1_1.17.0-2+b1_armhf.deb ...
Unpacking libxcb-sync1:armhf (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-xfixes0:armhf.
Preparing to unpack .../036-libxcb-xfixes0_1.17.0-2+b1_armhf.deb ...
Unpacking libxcb-xfixes0:armhf (1.17.0-2+b1) ...
Selecting previously unselected package libxshmfence1:armhf.
Preparing to unpack .../037-libxshmfence1_1.3-1+b2_armhf.deb ...
Unpacking libxshmfence1:armhf (1.3-1+b2) ...
Selecting previously unselected package mesa-libgallium:armhf.
Preparing to unpack .../038-mesa-libgallium_24.2.8-1_armhf.deb ...
Unpacking mesa-libgallium:armhf (24.2.8-1) ...
Selecting previously unselected package libgbm1:armhf.
Preparing to unpack .../039-libgbm1_24.2.8-1_armhf.deb ...
Unpacking libgbm1:armhf (24.2.8-1) ...
Selecting previously unselected package libwayland-client0:armhf.
Preparing to unpack .../040-libwayland-client0_1.23.0-1+b1_armhf.deb ...
Unpacking libwayland-client0:armhf (1.23.0-1+b1) ...
Selecting previously unselected package libxcb-shm0:armhf.
Preparing to unpack .../041-libxcb-shm0_1.17.0-2+b1_armhf.deb ...
Unpacking libxcb-shm0:armhf (1.17.0-2+b1) ...
Selecting previously unselected package libegl-mesa0:armhf.
Preparing to unpack .../042-libegl-mesa0_24.2.8-1_armhf.deb ...
Unpacking libegl-mesa0:armhf (24.2.8-1) ...
Selecting previously unselected package libegl1:armhf.
Preparing to unpack .../043-libegl1_1.7.0-1+b2_armhf.deb ...
Unpacking libegl1:armhf (1.7.0-1+b2) ...
Selecting previously unselected package libgles2:armhf.
Preparing to unpack .../044-libgles2_1.7.0-1+b2_armhf.deb ...
Unpacking libgles2:armhf (1.7.0-1+b2) ...
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Setting up libxcb-xinerama0:armhf (1.17.0-2+b1) ...
Setting up libunbound8:armhf (1.22.0-1) ...
Setting up libutfcpp-dev (4.0.5-1) ...
Setting up libpkgconf3:armhf (1.8.1-4) ...
Setting up libgmpxx4ldbl:armhf (2:6.3.0+dfsg-3) ...
Setting up libgles2:armhf (1.7.0-1+b2) ...
Setting up libasound2t64:armhf (1.2.12-1+b1) ...
Setting up libexpat1-dev:armhf (2.6.4-1) ...
Setting up libjpeg62-turbo:armhf (1:2.1.5-3+b1) ...
Setting up emacsen-common (3.0.5) ...
Setting up qt5-qmake-bin (5.15.15+dfsg-2) ...
Setting up libzzip-0-13t64:armhf (0.13.72+dfsg.1-1.3) ...
Setting up libva2:armhf (2.22.0-1+b1) ...
Setting up libsqlite3-dev:armhf (3.46.1-1) ...
Setting up libx11-data (2:1.8.10-2) ...
Setting up libsvtav1enc2:armhf (2.3.0+dfsg-1) ...
Setting up libjpeg62-turbo-dev:armhf (1:2.1.5-3+b1) ...
Setting up libepoxy0:armhf (1.5.10-2) ...
Setting up libnspr4:armhf (2:4.36-1) ...
Setting up gnupg-l10n (2.2.45-2) ...
Setting up libxcb-sync1:armhf (1.17.0-2+b1) ...
Setting up libteckit0:armhf (2.5.12+ds1-1+b1) ...
Setting up libjsoncpp26:armhf (1.9.6-3) ...
Setting up htmldoc-common (1.9.20-1) ...
Setting up uuid-dev:armhf (2.40.2-13) ...
Setting up libpathplan4:armhf (2.42.4-2+b1) ...
Setting up libslurm42t64 (24.11.0-2) ...
Setting up libapache-pom-java (33-2) ...
Setting up libavahi-common-data:armhf (0.8-15) ...
Setting up libgles1:armhf (1.7.0-1+b2) ...
Setting up libdbus-1-3:armhf (1.16.0-1) ...
Setting up xfonts-encodings (1:1.0.4-2.2) ...
Setting up libfribidi0:armhf (1.0.16-1) ...
Setting up libopus0:armhf (1.5.2-2) ...
Setting up t1utils (1.41-4) ...
Setting up libtexlua53-5:armhf (2024.20240313.70630+ds-5+b1) ...
Setting up libimagequant0:armhf (2.18.0-1+b2) ...
Setting up libproc2-0:armhf (2:4.0.4-6) ...
Setting up libx265-209:armhf (3.6-3+b1) ...
Setting up comerr-dev:armhf (2.1-1.47.2~rc1-2) ...
Setting up libunistring5:armhf (1.3-1) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libssl-dev:armhf (3.3.2-2) ...
Setting up libpng16-16t64:armhf (1.6.44-3) ...
Setting up libhwloc15:armhf (2.11.2-1) ...
Setting up libimath-3-1-29t64:armhf (3.1.12-1+b1) ...
Setting up libvorbis0a:armhf (1.3.7-2+b1) ...
Setting up libtcl8.6:armhf (8.6.15+dfsg-2) ...
Setting up autopoint (0.22.5-3) ...
Setting up libmpfi0:armhf (1.5.4+ds-4) ...
Setting up icu-devtools (72.1-5+b1) ...
Setting up liblz4-dev:armhf (1.9.4-3+b1) ...
Setting up libmariadb3:armhf (1:11.4.4-2) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up unixodbc-common (2.3.12-2) ...
Setting up libqhullcpp8.0:armhf (2020.2-6+b2) ...
Setting up libpcsclite1:armhf (2.3.1-1) ...
Setting up pkgconf-bin (1.8.1-4) ...
Setting up libsensors5:armhf (1:3.6.0-10+b1) ...
Setting up liblerc-dev:armhf (4.0.0+ds-5) ...
Setting up libk5crypto3:armhf (1.21.3-3) ...
Setting up libltdl7:armhf (2.4.7-8) ...
Setting up opencl-c-headers (3.0~2024.10.24-2) ...
Setting up libfftw3-double3:armhf (3.3.10-2+b1) ...
Setting up libglapi-mesa:armhf (24.2.8-1) ...
Setting up libqhull-dev:armhf (2020.2-6+b2) ...
Setting up libkpathsea6:armhf (2024.20240313.70630+ds-5+b1) ...
Setting up libsasl2-2:armhf (2.1.28+dfsg1-8) ...
Setting up libgfortran5:armhf (14.2.0-11) ...
Setting up libdouble-conversion-dev:armhf (3.3.0-1+b2) ...
Setting up libvulkan1:armhf (1.3.296.0-1) ...
Setting up autoconf (2.72-3) ...
Setting up libnghttp3-9:armhf (1.6.0-2) ...
Setting up libwebp7:armhf (1.4.0-0.1+b1) ...
Setting up liblzma-dev:armhf (5.6.3-1+b1) ...
Setting up libxcb-dri2-0:armhf (1.17.0-2+b1) ...
Setting up libgif7:armhf (5.2.2-1+b1) ...
Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up libodbc2:armhf (2.3.12-2) ...
Setting up liburiparser1:armhf (0.9.8+dfsg-2) ...
Setting up libffi8:armhf (3.4.6-1) ...
Setting up libnuma1:armhf (2.0.18-1+b1) ...
Setting up libpcre2-posix3:armhf (10.44-5) ...
Setting up libfyba0t64:armhf (4.1.1-11+b1) ...
Setting up libvpx9:armhf (1.15.0-1) ...
Setting up dwz (0.15-1+b2) ...
Setting up libdav1d7:armhf (1.5.0-1+b1) ...
Setting up libmpich12:armhf (4.2.1-5) ...
Setting up libmtdev1t64:armhf (1.1.6-1.2+b1) ...
Setting up sensible-utils (0.0.24) ...
Setting up libminizip1t64:armhf (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up ocl-icd-libopencl1:armhf (2.3.2-1+b2) ...
Setting up libgif-dev:armhf (5.2.2-1+b1) ...
Setting up libxshmfence1:armhf (1.3-1+b2) ...
Setting up at-spi2-common (2.54.0-1) ...
Setting up cfortran (20210827-1) ...
Setting up libtiff6:armhf (4.5.1+git230720-5) ...
Setting up libxcb-randr0:armhf (1.17.0-2+b1) ...
Setting up dbus-session-bus-common (1.16.0-1) ...
Setting up librav1e0.7:armhf (0.7.1-7+b3) ...
Setting up libuchardet0:armhf (0.0.8-1+b2) ...
Setting up libassuan9:armhf (3.0.1-2) ...
Setting up procps (2:4.0.4-6) ...
Setting up libjson-perl (4.10000-1) ...
Setting up libblosc1:armhf (1.21.5+ds-1+b2) ...
Setting up libtasn1-6:armhf (4.19.0-3+b3) ...
Setting up libmd4c0:armhf (0.5.2-2+b1) ...
Setting up fonts-lmodern (2.005-1) ...
Setting up libopenjp2-7:armhf (2.5.0-2+b4) ...
Setting up python3.13-minimal (3.13.1-2) ...
Setting up git-man (1:2.45.2-1.3) ...
Setting up libx11-6:armhf (2:1.8.10-2) ...
Setting up libthai-data (0.1.29-2) ...
Setting up xorg-sgml-doctools (1:1.11-1.1) ...
Setting up netbase (6.4) ...
Setting up libabsl20230802:armhf (20230802.1-4) ...
Setting up libngtcp2-16:armhf (1.9.1-1) ...
Setting up sgml-base (1.31) ...
Setting up cmake-data (3.31.2-1) ...
Setting up librhash1:armhf (1.4.5-1) ...
Setting up libcdt5:armhf (2.42.4-2+b1) ...
Setting up libkrb5-3:armhf (1.21.3-3) ...
Setting up libcgraph6:armhf (2.42.4-2+b1) ...
Setting up libboost-dev:armhf (1.83.0.2+b2) ...
Setting up libglu1-mesa:armhf (9.0.2-1.1+b2) ...
Setting up libwayland-egl1:armhf (1.23.0-1+b1) ...
Setting up libmbedcrypto16:armhf (3.6.2-3) ...
Setting up libpaper2:armhf (2.2.5-0.3) ...
Setting up libssh2-1t64:armhf (1.11.1-1) ...
Setting up libopengl-dev:armhf (1.7.0-1+b2) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up libhunspell-1.7-0:armhf (1.7.2+really1.7.2-10+b3) ...
Setting up dbus-system-bus-common (1.16.0-1) ...
useradd: Warning: missing or non-executable shell '/usr/sbin/nologin'
Setting up libde265-0:armhf (1.0.15-1+b2) ...
Setting up libsharpyuv-dev:armhf (1.4.0-0.1+b1) ...
Setting up libkmlbase1t64:armhf (1.3.0-12+b1) ...
Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ...
Setting up libtasn1-6-dev:armhf (4.19.0-3+b3) ...
Setting up openssl (3.3.2-2) ...
Setting up libwebpmux3:armhf (1.4.0-0.1+b1) ...
Setting up libtiffxx6:armhf (4.5.1+git230720-5) ...
Setting up libdeflate-dev:armhf (1.22-1) ...
Setting up libdrm-common (2.4.123-1) ...
Setting up libyuv0:armhf (0.0.1898.20241219-1) ...
Setting up libxcomposite1:armhf (1:0.4.6-1) ...
Setting up libjson-c5:armhf (0.18+ds-1) ...
Setting up libevdev2:armhf (1.13.3+dfsg-1) ...
Setting up readline-common (8.2-6) ...
Setting up libicu-dev:armhf (72.1-5+b1) ...
Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
Setting up sphinx-rtd-theme-common (3.0.2+dfsg-1) ...
Setting up xdg-utils (1.2.1-2) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up iso-codes (4.17.0-1) ...
Setting up dbus-bin (1.16.0-1) ...
Setting up libbrotli-dev:armhf (1.1.0-2+b6) ...
Setting up libfmt10:armhf (10.1.1+ds1-4) ...
Setting up libzvbi-common (0.2.43-2) ...
Setting up qtchooser (66-2) ...
Setting up libmp3lame0:armhf (3.100-6+b3) ...
Setting up libblas-dev:armhf (3.12.0-4) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up libsz2:armhf (1.1.3-1+b1) ...
Setting up libvorbisenc2:armhf (1.3.7-2+b1) ...
Setting up libsynctex2:armhf (2024.20240313.70630+ds-5+b1) ...
Setting up libdvdnav4:armhf (6.1.1-3+b1) ...
Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Setting up libodbccr2:armhf (2.3.12-2) ...
Setting up gdal-plugins:armhf (3.9.3+dfsg-1+b2) ...
Setting up libwacom-common (2.13.0-1) ...
Setting up libbz2-dev:armhf (1.0.8-6) ...
Setting up libxkbcommon0:armhf (1.7.0-2) ...
Setting up libpotrace0:armhf (1.16-2+b2) ...
Setting up libwayland-client0:armhf (1.23.0-1+b1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libgfortran-14-dev:armhf (14.2.0-11) ...
Setting up libksba8:armhf (1.6.7-2+b1) ...
Setting up pinentry-curses (1.2.1-5) ...
Setting up x11proto-dev (2024.1-1) ...
Setting up libfile-stripnondeterminism-perl (1.14.0-1) ...
Setting up libxcb-dri3-0:armhf (1.17.0-2+b1) ...
Setting up libllvm19:armhf (1:19.1.6-1) ...
Setting up libwayland-server0:armhf (1.23.0-1+b1) ...
Setting up libx11-xcb1:armhf (2:1.8.10-2) ...
Setting up libice6:armhf (2:1.1.1-1) ...
Setting up libjsoncpp-dev:armhf (1.9.6-3) ...
Setting up libodbcinst2:armhf (2.3.12-2) ...
Setting up tcl8.6 (8.6.15+dfsg-2) ...
Setting up liblapack3:armhf (3.12.0-4) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libkmlxsd1t64:armhf (1.3.0-12+b1) ...
Setting up gettext (0.22.5-3) ...
Setting up libarpack2t64:armhf (3.9.1-4) ...
Setting up libxdamage1:armhf (1:1.1.6-1+b2) ...
Setting up libgmp-dev:armhf (2:6.3.0+dfsg-3) ...
Setting up libclang1-19 (1:19.1.6-1) ...
Setting up libpdfbox-java (1:1.8.16-5) ...
Setting up libxau-dev:armhf (1:1.0.11-1) ...
Setting up libxpm4:armhf (1:3.5.17-1+b2) ...
Setting up libsymspg-dev:armhf (2.5.0-1+b1) ...
Setting up qt5-qmake:armhf (5.15.15+dfsg-2) ...
Setting up libpcre2-dev:armhf (10.44-5) ...
Setting up libzvbi0t64:armhf (0.2.43-2) ...
Setting up nettle-dev:armhf (3.10-1+b1) ...
Setting up libwoff1:armhf (1.0.2-2+b2) ...
Setting up libxrender1:armhf (1:0.9.10-1.1+b3) ...
Setting up libice-dev:armhf (2:1.1.1-1) ...
Setting up dictionaries-common (1.30.2) ...
Setting up voro++-dev (0.5+revert-to-0.4.6+dfsg1-1) ...
Setting up libtool (2.4.7-8) ...
Setting up libblosc-dev:armhf (1.21.5+ds-1+b2) ...
Setting up libfftw3-bin (3.3.10-2+b1) ...
Setting up fontconfig-config (2.15.0-1.1+b1) ...
Setting up libjson-c-dev:armhf (0.18+ds-1) ...
Setting up libgeos-c1t64:armhf (3.13.0-1) ...
Setting up libfyba-dev:armhf (4.1.1-11+b1) ...
Setting up libwebpdemux2:armhf (1.4.0-0.1+b1) ...
Setting up tcl8.6-dev:armhf (8.6.15+dfsg-2) ...
Setting up libpng-dev:armhf (1.6.44-3) ...
Setting up libcommons-parent-java (56-1) ...
Setting up hwloc-nox (2.11.2-1) ...
Setting up libaec-dev:armhf (1.1.3-1+b1) ...
Setting up libavahi-common3:armhf (0.8-15) ...
Setting up libjpeg-dev:armhf (1:2.1.5-3+b1) ...
Setting up libjbig-dev:armhf (2.1-6.1+b2) ...
Setting up libcommons-logging-java (1.3.0-1) ...
Setting up libxext6:armhf (2:1.3.4-1+b2) ...
Setting up libidn2-0:armhf (2.3.7-2+b1) ...
Setting up libnss3:armhf (2:3.106-1) ...
Setting up dbus-daemon (1.16.0-1) ...
Setting up libpaper-utils (2.2.5-0.3) ...
Setting up libkim-api2:armhf (2.3.0-1+b2) ...
Setting up libkim-api-dev (2.3.0-1+b2) ...
Setting up libsuperlu7:armhf (7.0.0+dfsg1-2) ...
Setting up pkgconf:armhf (1.8.1-4) ...
Setting up libxxf86vm1:armhf (1:1.1.4-1+b3) ...
Setting up libtbbbind-2-5:armhf (2021.12.0-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up liburiparser-dev (0.9.8+dfsg-2) ...
Setting up libnuma-dev:armhf (2.0.18-1+b1) ...
Setting up librist4:armhf (0.2.11+dfsg-1) ...
Setting up libkmldom1t64:armhf (1.3.0-12+b1) ...
Setting up dh-autoreconf (20) ...
Setting up libminizip-dev:armhf (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up libltdl-dev:armhf (2.4.7-8) ...
Setting up libthai0:armhf (0.1.29-2+b1) ...
Setting up ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
152 added, 0 removed; done.
Setting up libvorbisfile3:armhf (1.3.7-2+b1) ...
Setting up libxdmcp-dev:armhf (1:1.1.5-1) ...
Setting up libxml2-dev:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up libglib2.0-0t64:armhf (2.82.4-1) ...
Setting up libwebp-dev:armhf (1.4.0-0.1+b1) ...
Setting up libptexenc1:armhf (2024.20240313.70630+ds-5+b1) ...
Setting up libfreetype6:armhf (2.13.3+dfsg-1) ...
Setting up libtiff-dev:armhf (4.5.1+git230720-5) ...
Setting up libopenjp2-7-dev:armhf (2.5.0-2+b4) ...
Setting up libxfixes3:armhf (1:6.0.0-2+b3) ...
Setting up libgeos-dev (3.13.0-1) ...
Setting up dbus (1.16.0-1) ...
Running in chroot, ignoring request.
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libopenexr-3-1-30:armhf (3.1.5-5.1+b3) ...
Setting up shared-mime-info (2.4-5+b1) ...
Setting up libp11-kit0:armhf (0.25.5-3) ...
Setting up libxinerama1:armhf (2:1.1.4-3+b3) ...
Setting up opencl-clhpp-headers (3.0~2024.10.24-2) ...
Setting up libxkbcommon-x11-0:armhf (1.7.0-2) ...
Setting up liblapack-dev:armhf (3.12.0-4) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libeigen3-dev (3.4.0-4) ...
Setting up libgssapi-krb5-2:armhf (1.21.3-3) ...
Setting up libxrandr2:armhf (2:1.5.4-1+b2) ...
Setting up pkg-config:armhf (1.8.1-4) ...
Setting up libgav1-1:armhf (0.19.0-2+b2) ...
Setting up ucf (3.0046) ...
Setting up libssh2-1-dev:armhf (1.11.1-1) ...
Setting up libidn2-dev:armhf (2.3.7-2+b1) ...
Setting up libjs-sphinxdoc (8.1.3-3) ...
Setting up ocl-icd-opencl-dev:armhf (2.3.2-1+b2) ...
Setting up libssh-4:armhf (0.11.1-1) ...
Setting up libhdf4-0-alt:armhf (4.3.0-1+b1) ...
Setting up libmariadb-dev (1:11.4.4-2) ...
Setting up libreadline8t64:armhf (8.2-6) ...
Setting up dh-strip-nondeterminism (1.14.0-1) ...
Setting up libgvpr2:armhf (2.42.4-2+b1) ...
Setting up libdrm2:armhf (2.4.123-1) ...
Setting up librttopo1:armhf (1.1.0-3+b2) ...
Setting up libfreexl1:armhf (2.0.0-1+b3) ...
Setting up libva-drm2:armhf (2.22.0-1+b1) ...
Setting up groff-base (1.23.0-7) ...
Setting up libvdpau1:armhf (1.5-3+b1) ...
Setting up libwayland-cursor0:armhf (1.23.0-1+b1) ...
Setting up xml-core (0.19) ...
Setting up tcl (8.6.14) ...
Setting up libxslt1.1:armhf (1.1.35-1.1+b1) ...
Setting up gpgconf (2.2.45-2) ...
Setting up hunspell-en-us (1:2020.12.07-3) ...
Setting up libpam-systemd:armhf (257.1-5) ...
Setting up libharfbuzz0b:armhf (10.1.0-1) ...
Setting up libgdk-pixbuf-2.0-0:armhf (2.42.12+dfsg-1+b1) ...
Setting up libgts-0.7-5t64:armhf (0.7.6+darcs121130-5.2+b1) ...
Setting up libarmadillo14 (1:14.2.1+dfsg-1) ...
Setting up libhwloc-dev:armhf (2.11.2-1) ...
Setting up libxss1:armhf (1:1.2.3-1+b2) ...
Setting up libfontconfig1:armhf (2.15.0-1.1+b1) ...
Setting up ca-certificates-java (20240118) ...
No JRE found. Skipping Java certificates setup.
Setting up libbluray2:armhf (1:1.3.4-1+b2) ...
Setting up libsuperlu-dev:armhf (7.0.0+dfsg1-2) ...
Setting up libva-x11-2:armhf (2.22.0-1+b1) ...
Setting up libsm6:armhf (2:1.2.4-1) ...
Setting up libarchive13t64:armhf (3.7.4-1.1) ...
Setting up libpython3.13-stdlib:armhf (3.13.1-2) ...
Setting up libfftw3-dev:armhf (3.3.10-2+b1) ...
Setting up unixodbc-dev:armhf (2.3.12-2) ...
Setting up libopenmpt0t64:armhf (0.7.12-1) ...
Setting up libavahi-client3:armhf (0.8-15) ...
Setting up gpg (2.2.45-2) ...
Setting up libgudev-1.0-0:armhf (238-5+b1) ...
Setting up libgstreamer1.0-0:armhf (1.24.10-2) ...
Setcap worked! gst-ptp-helper is not suid!
Setting up libp11-kit-dev:armhf (0.25.5-3) ...
Setting up libclang-cpp19 (1:19.1.6-1) ...
Setting up gfortran-14-arm-linux-gnueabihf (14.2.0-11) ...
Setting up libdrm-amdgpu1:armhf (2.4.123-1) ...
Setting up libjxl0.10:armhf (0.10.4-2) ...
Setting up libpython3.13:armhf (3.13.1-2) ...
Setting up libgnutls30t64:armhf (3.8.8-2) ...
Setting up libmariadb-dev-compat (1:11.4.4-2) ...
Setting up libgnutls-openssl27t64:armhf (3.8.8-2) ...
Setting up gtk-update-icon-cache (4.16.7+ds-1) ...
Setting up librttopo-dev:armhf (1.1.0-3+b2) ...
Setting up libnghttp2-dev:armhf (1.64.0-1) ...
Setting up fontconfig (2.15.0-1.1+b1) ...
Regenerating fonts cache... done.
Setting up libavif16:armhf (1.1.1-1) ...
Setting up libxft2:armhf (2.3.6-1+b3) ...
Setting up libarpack2-dev:armhf (3.9.1-4) ...
Setting up gpg-agent (2.2.45-2) ...
Created symlink '/etc/systemd/user/sockets.target.wants/gpg-agent-browser.socket' -> '/usr/lib/systemd/user/gpg-agent-browser.socket'.
Created symlink '/etc/systemd/user/sockets.target.wants/gpg-agent-extra.socket' -> '/usr/lib/systemd/user/gpg-agent-extra.socket'.
Created symlink '/etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket' -> '/usr/lib/systemd/user/gpg-agent-ssh.socket'.
Created symlink '/etc/systemd/user/sockets.target.wants/gpg-agent.socket' -> '/usr/lib/systemd/user/gpg-agent.socket'.
Setting up libxcb1-dev:armhf (1.17.0-2+b1) ...
Setting up libatk1.0-0t64:armhf (2.54.0-1) ...
Setting up libzmq5:armhf (4.3.5-1+b3) ...
Setting up openjdk-21-jre-headless:armhf (21.0.5+11-1) ...
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
Setting up libxi6:armhf (2:1.8.2-1) ...
Setting up libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ...
Setting up libogdi4.1:armhf (4.1.1+ds-5) ...
Setting up libenchant-2-2:armhf (2.8.2+dfsg1-1) ...
Setting up python3.13 (3.13.1-2) ...
Setting up python3-pip-whl (24.3.1+dfsg-1) ...
Setting up libwacom9:armhf (2.13.0-1) ...
Setting up libsm-dev:armhf (2:1.2.4-1) ...
Setting up libdrm-radeon1:armhf (2.4.123-1) ...
Setting up mpich (4.2.1-5) ...
update-alternatives: using /usr/bin/mpicc.mpich to provide /usr/bin/mpicc (mpi) in auto mode
update-alternatives: using /usr/bin/mpirun.mpich to provide /usr/bin/mpirun (mpirun) in auto mode
Setting up libfreexl-dev:armhf (2.0.0-1+b3) ...
Setting up libxtst6:armhf (2:1.2.3-1.1+b3) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libtk8.6:armhf (8.6.15-1) ...
Setting up libxcursor1:armhf (1:1.2.2-1+b1) ...
Setting up gpgsm (2.2.45-2) ...
Setting up libpango-1.0-0:armhf (1.55.0+ds-3) ...
Setting up libpsl5t64:armhf (0.21.2-1.1+b1) ...
Setting up mpi-default-bin (1.18) ...
Setting up libx11-dev:armhf (2:1.8.10-2) ...
Setting up libcloudproviders0:armhf (0.3.6-1+b1) ...
Setting up libgstreamer-plugins-base1.0-0:armhf (1.24.10-1) ...
Setting up libtbb12:armhf (2021.12.0-1) ...
Setting up libkmlengine1t64:armhf (1.3.0-12+b1) ...
Setting up xfonts-utils (1:7.7+7) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Created symlink '/etc/systemd/system/timers.target.wants/man-db.timer' -> '/usr/lib/systemd/system/man-db.timer'.
Setting up libavutil59:armhf (7:7.1-3+b1) ...
Setting up libcairo2:armhf (1.18.2-2) ...
Setting up libldap-2.5-0:armhf (2.5.19+dfsg-1) ...
Setting up libcolord2:armhf (1.4.7-1+b2) ...
Setting up gfortran-arm-linux-gnueabihf (4:14.2.0-1) ...
Setting up libpsl-dev:armhf (0.21.2-1.1+b1) ...
Setting up libinput-bin (1.26.2-1) ...
Setting up libfreetype-dev:armhf (2.13.3+dfsg-1) ...
Setting up libdconf1:armhf (0.40.0-4+b3) ...
Setting up tex-common (6.18) ...
update-language: texlive-base not installed and configured, doing nothing!
Setting up dirmngr (2.2.45-2) ...
Created symlink '/etc/systemd/user/sockets.target.wants/dirmngr.socket' -> '/usr/lib/systemd/user/dirmngr.socket'.
Setting up dbus-user-session (1.16.0-1) ...
Setting up libswresample5:armhf (7:7.1-3+b1) ...
Setting up libqt5core5t64:armhf (5.15.15+dfsg-2) ...
Setting up libswscale8:armhf (7:7.1-3+b1) ...
Setting up doxygen (1.9.8+ds-2+b3) ...
Setting up libtirpc-dev:armhf (1.3.4+ds-1.3+b1) ...
Setting up libgnutls-dane0t64:armhf (3.8.8-2) ...
Setting up adwaita-icon-theme (47.0-2) ...
update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libgssrpc4t64:armhf (1.21.3-3) ...
Setting up libldap-dev:armhf (2.5.19+dfsg-1) ...
Setting up libatspi2.0-0t64:armhf (2.54.0-1) ...
Setting up libraqm0:armhf (0.10.2-1) ...
Setting up libpython3.13-dev:armhf (3.13.1-2) ...
Setting up sphinx-common (8.1.3-3) ...
Setting up libxt6t64:armhf (1:1.2.1-1.2+b1) ...
Setting up qtattributionsscanner-qt5 (5.15.15-4) ...
Setting up tcl-dev:armhf (8.6.14) ...
Setting up libxext-dev:armhf (2:1.3.4-1+b2) ...
Setting up libsrt1.5-gnutls:armhf (1.5.4-1) ...
Setting up libtheora0:armhf (1.1.1+dfsg.1-17) ...
Setting up libnsl2:armhf (1.3.0-3+b3) ...
Setting up gnupg (2.2.45-2) ...
Setting up libqt5sql5t64:armhf (5.15.15+dfsg-2) ...
Setting up libcairo-gobject2:armhf (1.18.2-2) ...
Setting up libgpgme11t64:armhf (1.24.1-2) ...
Setting up libtbb-dev:armhf (2021.12.0-1) ...
Setting up libkmlconvenience1t64:armhf (1.3.0-12+b1) ...
Setting up libpangoft2-1.0-0:armhf (1.55.0+ds-3) ...
Setting up gfortran-14 (14.2.0-11) ...
Setting up libxrender-dev:armhf (1:0.9.10-1.1+b3) ...
Setting up libogdi-dev (4.1.1+ds-5) ...
Setting up libfltk1.3t64:armhf (1.3.8-6.1+b1) ...
Setting up libcups2t64:armhf (2.4.10-2+b1) ...
Setting up tex-gyre (20180621-6) ...
Setting up libngtcp2-crypto-gnutls8:armhf (1.9.1-1) ...
Setting up libpangocairo-1.0-0:armhf (1.55.0+ds-3) ...
Setting up libkadm5clnt-mit12:armhf (1.21.3-3) ...
Setting up default-libmysqlclient-dev:armhf (1.1.1) ...
Setting up libgnutls28-dev:armhf (3.8.8-2) ...
Setting up libavutil-dev:armhf (7:7.1-3+b1) ...
Setting up libatk-bridge2.0-0t64:armhf (2.54.0-1) ...
Setting up tk8.6 (8.6.15-1) ...
Setting up libinput10:armhf (1.26.2-1) ...
Setting up libgpgmepp6t64:armhf (1.24.1-2) ...
Setting up libfltk-images1.3t64:armhf (1.3.8-6.1+b1) ...
Setting up mesa-libgallium:armhf (24.2.8-1) ...
Setting up libxmu6:armhf (2:1.1.3-3+b3) ...
Setting up libqt5dbus5t64:armhf (5.15.15+dfsg-2) ...
Setting up libkmlregionator1t64:armhf (1.3.0-12+b1) ...
Setting up libpython3.12-stdlib:armhf (3.12.8-3) ...
Setting up libqt5sql5-sqlite:armhf (5.15.15+dfsg-2) ...
Setting up libcurl4t64:armhf (8.11.1-1) ...
Setting up libkdb5-10t64:armhf (1.21.3-3) ...
Setting up libgbm1:armhf (24.2.8-1) ...
Setting up libswresample-dev:armhf (7:7.1-3+b1) ...
Setting up libfontconfig-dev:armhf (2.15.0-1.1+b1) ...
Setting up python3.13-dev (3.13.1-2) ...
Setting up qdoc-qt5 (5.15.15-4) ...
Setting up libqt5concurrent5t64:armhf (5.15.15+dfsg-2) ...
Setting up preview-latex-style (13.2-1) ...
Setting up python3.12 (3.12.8-3) ...
Setting up libqt5positioning5:armhf (5.15.15+dfsg-2) ...
Setting up libgl1-mesa-dri:armhf (24.2.8-1) ...
Setting up libqt5network5t64:armhf (5.15.15+dfsg-2) ...
Setting up libpq5:armhf (17.2-1) ...
Setting up libcurl3t64-gnutls:armhf (8.11.1-1) ...
Setting up libqt5xml5t64:armhf (5.15.15+dfsg-2) ...
Setting up debhelper (13.22) ...
Setting up libpq-dev (17.2-1) ...
Setting up dconf-service (0.40.0-4+b3) ...
Setting up libxaw7:armhf (2:1.0.16-1) ...
Setting up libqt5test5t64:armhf (5.15.15+dfsg-2) ...
Setting up libxerces-c3.2t64:armhf (3.2.4+debian-1.3+b1) ...
Setting up libxss-dev:armhf (1:1.2.3-1+b2) ...
Setting up gfortran (4:14.2.0-1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up librsvg2-2:armhf (2.59.2+dfsg-1) ...
Setting up libpython3.12t64:armhf (3.12.8-3) ...
Setting up qtbase5-dev-tools (5.15.15+dfsg-2) ...
Setting up libegl-mesa0:armhf (24.2.8-1) ...
Setting up libtheora-dev:armhf (1.1.1+dfsg.1-17) ...
Setting up libcfitsio10t64:armhf (4.5.0-5) ...
Setting up libxt-dev:armhf (1:1.2.1-1.2+b1) ...
Setting up libqt5qml5:armhf (5.15.15+dfsg-3) ...
Setting up libxerces-c-dev:armhf (3.2.4+debian-1.3+b1) ...
Setting up libswscale-dev:armhf (7:7.1-3+b1) ...
Setting up librtmp-dev:armhf (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libmpich-dev:armhf (4.2.1-5) ...
update-alternatives: using /usr/include/arm-linux-gnueabihf/mpich to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode
Setting up libavcodec61:armhf (7:7.1-3+b1) ...
Setting up libqt5webchannel5:armhf (5.15.15-2) ...
Setting up git (1:2.45.2-1.3) ...
Setting up libhdf5-310:armhf (1.14.5+repack-1) ...
Setting up texlive-binaries (2024.20240313.70630+ds-5+b1) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up mpi-default-dev (1.18) ...
Setting up libkadm5srv-mit12:armhf (1.21.3-3) ...
Setting up libegl1:armhf (1.7.0-1+b2) ...
Setting up cmake (3.31.2-1) ...
Setting up libpoppler140:armhf (24.08.0-3) ...
Setting up libqt5sensors5:armhf (5.15.15-2) ...
Setting up htmldoc (1.9.20-1) ...
Setting up libhdf5-mpich-310:armhf (1.14.5+repack-1) ...
Setting up tk (8.6.14) ...
Setting up libhdf5-fortran-310:armhf (1.14.5+repack-1) ...
Setting up texlive-base (2024.20241115-1) ...
tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
Setting up libpython3-stdlib:armhf (3.12.8-1) ...
Setting up libxft-dev:armhf (2.3.6-1+b3) ...
Setting up krb5-multidev:armhf (1.21.3-3) ...
Setting up libhdf5-cpp-310:armhf (1.14.5+repack-1) ...
Setting up libpoppler-dev:armhf (24.08.0-3) ...
Setting up libkml-dev:armhf (1.3.0-12+b1) ...
Setting up libhdf5-hl-310:armhf (1.14.5+repack-1) ...
Setting up libnetcdf19t64:armhf (1:4.9.2-7+b1) ...
Setting up libhdf5-mpich-hl-310:armhf (1.14.5+repack-1) ...
Setting up libqt5qmlmodels5:armhf (5.15.15+dfsg-3) ...
Setting up libfontconfig1-dev:armhf (2.15.0-1.1+b1) ...
Setting up libglx-mesa0:armhf (24.2.8-1) ...
Setting up libcfitsio-dev:armhf (4.5.0-5) ...
Setting up libhdf5-mpich-cpp-310:armhf (1.14.5+repack-1) ...
Setting up libglx0:armhf (1.7.0-1+b2) ...
Setting up dconf-gsettings-backend:armhf (0.40.0-4+b3) ...
Setting up libproj25:armhf (9.5.1-1) ...
Setting up python3.12-venv (3.12.8-3) ...
Setting up libavcodec-dev:armhf (7:7.1-3+b1) ...
Setting up libpoppler-private-dev:armhf (24.08.0-3) ...
Setting up python3 (3.12.8-1) ...
Setting up libpython3.12-dev:armhf (3.12.8-3) ...
Setting up python3-zipp (3.21.0-1) ...
Setting up python3-mpi4py (4.0.1-6) ...
Setting up python3-autocommand (2.2.2-3) ...
Setting up python3-markupsafe (2.1.5-1+b2) ...
Setting up python3-wheel (0.45.1-1) ...
Setting up libavformat61:armhf (7:7.1-3+b1) ...
Setting up libgeotiff5:armhf (1.7.3-1+b1) ...
Setting up libqt5qmlworkerscript5:armhf (5.15.15+dfsg-3) ...
Setting up libkrb5-dev:armhf (1.21.3-3) ...
Setting up python3-roman (4.2-1) ...
Setting up python3-jinja2 (3.1.3-1.1) ...
Setting up libqt5gui5t64:armhf (5.15.15+dfsg-2) ...
Setting up python3-packaging (24.2-1) ...
Setting up libgl1:armhf (1.7.0-1+b2) ...
Setting up python3-venv (3.12.8-1) ...
Setting up python3-pyproject-hooks (1.2.0-1) ...
Setting up python3-enchant (3.2.2-1) ...
Setting up texlive-latex-base (2024.20241115-1) ...
Setting up python3-certifi (2024.8.30+dfsg-1) ...
Setting up libcurl4-openssl-dev:armhf (8.11.1-1) ...
Setting up python3-snowballstemmer (2.2.0-4) ...
Setting up texlive-latex-recommended (2024.20241115-1) ...
Setting up libproj-dev:armhf (9.5.1-1) ...
Setting up python3-idna (3.8-2) ...
Setting up python3.12-dev (3.12.8-3) ...
Setting up libhdf5-mpich-hl-cpp-310:armhf (1.14.5+repack-1) ...
Setting up python3-typing-extensions (4.12.2-2) ...
Setting up libglew2.2:armhf (2.2.0-4+b2) ...
Setting up python3-toml (0.10.2-1) ...
Setting up texlive-pictures (2024.20241115-1) ...
Setting up python3-installer (0.7.0+dfsg1-3) ...
Setting up libhdf5-mpich-fortran-310:armhf (1.14.5+repack-1) ...
Setting up python3-urllib3 (2.2.3-4) ...
Setting up tk8.6-dev:armhf (8.6.15-1) ...
Setting up texlive-fonts-recommended (2024.20241115-1) ...
Setting up libglx-dev:armhf (1.7.0-1+b2) ...
Setting up python3-build (1.2.2-1) ...
Setting up libqt5quick5:armhf (5.15.15+dfsg-3) ...
Setting up libgl-dev:armhf (1.7.0-1+b2) ...
Setting up libgtk-3-common (3.24.43-4) ...
Setting up python3-imagesize (1.4.1-1) ...
Setting up libspatialite8t64:armhf (5.1.0-3+b2) ...
Setting up python3-more-itertools (10.5.0-1) ...
Setting up libhdf5-hl-cpp-310:armhf (1.14.5+repack-1) ...
Setting up libqt5quickshapes5:armhf (5.15.15+dfsg-3) ...
Setting up libhdf5-hl-fortran-310:armhf (1.14.5+repack-1) ...
Setting up libvulkan-dev:armhf (1.3.296.0-1) ...
Setting up libpython3-dev:armhf (3.12.8-1) ...
Setting up python3-importlib-metadata (8.5.0-1) ...
Setting up python3-jaraco.functools (4.1.0-1) ...
Setting up python3-jaraco.context (6.0.0-1) ...
Setting up libegl-dev:armhf (1.7.0-1+b2) ...
Setting up libqt5widgets5t64:armhf (5.15.15+dfsg-2) ...
Setting up libgeotiff-dev:armhf (1.7.3-1+b1) ...
Setting up python3-defusedxml (0.7.1-3) ...
Setting up python3-charset-normalizer (3.4.0-1+b1) ...
Setting up python3-alabaster (0.7.16-0.1) ...
Setting up python3-typeguard (4.4.1-1) ...
Setting up libhdf5-mpich-hl-fortran-310:armhf (1.14.5+repack-1) ...
Setting up latexmk (1:4.86~ds-1) ...
Setting up python3-all (3.12.8-1) ...
Setting up libhdf5-mpich-dev (1.14.5+repack-1) ...
update-alternatives: using /usr/bin/h5pcc.mpich to provide /usr/bin/h5pcc (h5pcc) in auto mode
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-mpich.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
update-alternatives: updating alternative /usr/bin/mpicc.mpich because link group mpi has changed slave links
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-mpi.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up texlive-latex-extra (2024.20241115-1) ...
Setting up libavformat-dev:armhf (7:7.1-3+b1) ...
Setting up libqt5help5:armhf (5.15.15-4) ...
Setting up libgl2ps1.4 (1.4.2+dfsg1-2) ...
Setting up qt5-qmltooling-plugins:armhf (5.15.15+dfsg-3) ...
Setting up libqt5quickwidgets5:armhf (5.15.15+dfsg-3) ...
Setting up python3-inflect (7.3.1-2) ...
Setting up tk-dev:armhf (8.6.14) ...
Setting up libpython3-all-dev:armhf (3.12.8-1) ...
Setting up python3-jaraco.text (4.0.0-1) ...
Setting up python3-dev (3.12.8-1) ...
Setting up libvtk9.3:armhf (9.3.0+dfsg1-1.1+b2) ...
Setting up libhdf5-mpi-dev:armhf (1.14.5+repack-1) ...
Setting up libgtk-3-0t64:armhf (3.24.43-4) ...
Setting up libhdf5-dev (1.14.5+repack-1) ...
Setting up libglu1-mesa-dev:armhf (9.0.2-1.1+b2) ...
Setting up libnetcdf-dev (1:4.9.2-7+b1) ...
Setting up libspatialite-dev:armhf (5.1.0-3+b2) ...
Setting up vtk9 (9.3.0+dfsg1-1.1+b2) ...
Setting up libqt5opengl5t64:armhf (5.15.15+dfsg-2) ...
Setting up libqt5quickparticles5:armhf (5.15.15+dfsg-3) ...
Setting up libgles-dev:armhf (1.7.0-1+b2) ...
Setting up libqt5printsupport5t64:armhf (5.15.15+dfsg-2) ...
Setting up python3-pkg-resources (75.6.0-1) ...
Setting up python3-all-dev (3.12.8-1) ...
Setting up libqt5quicktest5:armhf (5.15.15+dfsg-3) ...
Setting up python3-setuptools (75.6.0-1) ...
Setting up libvtk9.3-qt:armhf (9.3.0+dfsg1-1.1+b2) ...
Setting up libqt5designer5:armhf (5.15.15-4) ...
Setting up python3-babel (2.16.0-1) ...
update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode
Setting up qtdeclarative5-dev-tools (5.15.15+dfsg-3) ...
Setting up qhelpgenerator-qt5 (5.15.15-4) ...
Setting up libqt5webkit5:armhf (5.212.0~alpha4-41) ...
Setting up libqt5designercomponents5:armhf (5.15.15-4) ...
Setting up libgl2ps-dev (1.4.2+dfsg1-2) ...
Setting up libarmadillo-dev (1:14.2.1+dfsg-1) ...
Setting up libglew-dev:armhf (2.2.0-4+b2) ...
Setting up python3-pygments (2.18.0+dfsg-1) ...
Setting up python3-chardet (5.2.0+dfsg-1) ...
Setting up python3-requests (2.32.3+dfsg-1) ...
Setting up libhdf4-alt-dev (4.3.0-1+b1) ...
Setting up libvtk9-java (9.3.0+dfsg1-1.1+b2) ...
Setting up qtbase5-dev:armhf (5.15.15+dfsg-2) ...
Setting up qt5-assistant (5.15.15-4) ...
Setting up qttools5-dev-tools (5.15.15-4) ...
Setting up qtdeclarative5-dev:armhf (5.15.15+dfsg-3) ...
Setting up dh-python (6.20241217) ...
Setting up python3-vtk9 (9.3.0+dfsg1-1.1+b2) ...
/usr/lib/python3/dist-packages/vtkmodules/util/vtkMethodParser.py:304: SyntaxWarning: invalid escape sequence '\S'
patn = re.compile (" \S")
/usr/lib/python3/dist-packages/vtkmodules/util/vtkMethodParser.py:304: SyntaxWarning: invalid escape sequence '\S'
patn = re.compile (" \S")
Setting up libqt5opengl5-dev:armhf (5.15.15+dfsg-2) ...
Setting up pybuild-plugin-pyproject (6.20241217) ...
Setting up libqt5webkit5-dev:armhf (5.212.0~alpha4-41) ...
Setting up qttools5-dev:armhf (5.15.15-4) ...
Setting up qttools5-private-dev:armhf (5.15.15-4) ...
Setting up libheif-plugin-dav1d:armhf (1.19.3-1) ...
Setting up libheif-plugin-libde265:armhf (1.19.3-1) ...
Setting up libheif1:armhf (1.19.3-1) ...
Setting up libheif-dev:armhf (1.19.3-1) ...
Setting up libgd3:armhf (2.3.3-12+b1) ...
Setting up libgvc6 (2.42.4-2+b1) ...
Setting up libgdal35:armhf (3.9.3+dfsg-1+b2) ...
Setting up graphviz (2.42.4-2+b1) ...
Setting up libgdal-dev (3.9.3+dfsg-1+b2) ...
Processing triggers for libc-bin (2.40-4) ...
Processing triggers for systemd (257.1-5) ...
Processing triggers for ca-certificates-java (20240118) ...
Adding debian:ACCVRAIZ1.pem
Adding debian:AC_RAIZ_FNMT-RCM.pem
Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem
Adding debian:ANF_Secure_Server_Root_CA.pem
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:Amazon_Root_CA_1.pem
Adding debian:Amazon_Root_CA_2.pem
Adding debian:Amazon_Root_CA_3.pem
Adding debian:Amazon_Root_CA_4.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem
Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:BJCA_Global_Root_CA1.pem
Adding debian:BJCA_Global_Root_CA2.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:CFCA_EV_ROOT.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:COMODO_RSA_Certification_Authority.pem
Adding debian:Certainly_Root_E1.pem
Adding debian:Certainly_Root_R1.pem
Adding debian:Certigna.pem
Adding debian:Certigna_Root_CA.pem
Adding debian:Certum_EC-384_CA.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:Certum_Trusted_Network_CA_2.pem
Adding debian:Certum_Trusted_Root_CA.pem
Adding debian:CommScope_Public_Trust_ECC_Root-01.pem
Adding debian:CommScope_Public_Trust_ECC_Root-02.pem
Adding debian:CommScope_Public_Trust_RSA_Root-01.pem
Adding debian:CommScope_Public_Trust_RSA_Root-02.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:D-TRUST_BR_Root_CA_1_2020.pem
Adding debian:D-TRUST_EV_Root_CA_1_2020.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:DigiCert_Assured_ID_Root_G2.pem
Adding debian:DigiCert_Assured_ID_Root_G3.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:DigiCert_Global_Root_G2.pem
Adding debian:DigiCert_Global_Root_G3.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem
Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem
Adding debian:DigiCert_Trusted_Root_G4.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
Adding debian:Entrust_Root_Certification_Authority_-_G4.pem
Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem
Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
Adding debian:GLOBALTRUST_2020.pem
Adding debian:GTS_Root_R1.pem
Adding debian:GTS_Root_R2.pem
Adding debian:GTS_Root_R3.pem
Adding debian:GTS_Root_R4.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:GlobalSign_Root_CA_-_R6.pem
Adding debian:GlobalSign_Root_E46.pem
Adding debian:GlobalSign_Root_R46.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem
Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
Adding debian:HiPKI_Root_CA_-_G1.pem
Adding debian:Hongkong_Post_Root_CA_3.pem
Adding debian:ISRG_Root_X1.pem
Adding debian:ISRG_Root_X2.pem
Adding debian:IdenTrust_Commercial_Root_CA_1.pem
Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
Adding debian:Izenpe.com.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem
Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem
Adding debian:NAVER_Global_Root_Certification_Authority.pem
Adding debian:NetLock_Arany_=Class_Gold=_FÅ‘tanúsÃtvány.pem
Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
Adding debian:QuoVadis_Root_CA_1_G3.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:QuoVadis_Root_CA_2_G3.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:QuoVadis_Root_CA_3_G3.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem
Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem
Adding debian:SZAFIR_ROOT_CA2.pem
Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem
Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:SecureSign_Root_CA12.pem
Adding debian:SecureSign_Root_CA14.pem
Adding debian:SecureSign_Root_CA15.pem
Adding debian:SecureTrust_CA.pem
Adding debian:Secure_Global_CA.pem
Adding debian:Security_Communication_ECC_RootCA1.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:Security_Communication_RootCA3.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
Adding debian:TWCA_CYBER_Root_CA.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem
Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:Telia_Root_CA_v2.pem
Adding debian:TrustAsia_Global_Root_CA_G3.pem
Adding debian:TrustAsia_Global_Root_CA_G4.pem
Adding debian:Trustwave_Global_Certification_Authority.pem
Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem
Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem
Adding debian:TunTrust_Root_CA.pem
Adding debian:UCA_Extended_Validation_Root.pem
Adding debian:UCA_Global_G2_Root.pem
Adding debian:USERTrust_ECC_Certification_Authority.pem
Adding debian:USERTrust_RSA_Certification_Authority.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:certSIGN_Root_CA_G2.pem
Adding debian:e-Szigno_Root_CA_2017.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:emSign_ECC_Root_CA_-_C3.pem
Adding debian:emSign_ECC_Root_CA_-_G3.pem
Adding debian:emSign_Root_CA_-_C1.pem
Adding debian:emSign_Root_CA_-_G1.pem
Adding debian:vTrus_ECC_Root_CA.pem
Adding debian:vTrus_Root_CA.pem
done.
Setting up openjdk-21-jre:armhf (21.0.5+11-1) ...
Setting up openjdk-21-jdk-headless:armhf (21.0.5+11-1) ...
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jar to provide /usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/javac to provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/javap to provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jps to provide /usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jwebserver to provide /usr/bin/jwebserver (jwebserver) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode
Setting up default-jre-headless (2:1.21-76) ...
Setting up default-jre (2:1.21-76) ...
Setting up openjdk-21-jdk:armhf (21.0.5+11-1) ...
update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode
Setting up default-jdk-headless (2:1.21-76) ...
Setting up default-jdk (2:1.21-76) ...
Setting up libvtk9-dev:armhf (9.3.0+dfsg1-1.1+b2) ...
Setting up libvtk9-qt-dev:armhf (9.3.0+dfsg1-1.1+b2) ...
Processing triggers for sgml-base (1.31) ...
Setting up docutils-common (0.21.2+dfsg-2) ...
Processing triggers for sgml-base (1.31) ...
Setting up python3-docutils (0.21.2+dfsg-2) ...
Setting up python3-sphinx (8.1.3-3) ...
Setting up python3-sphinxcontrib.spelling (7.7.0-1) ...
Setting up python3-breathe (4.35.0-3) ...
Setting up python3-sphinxcontrib.jquery (4.1-5) ...
Setting up python3-sphinx-tabs (3.4.7-1) ...
Processing triggers for dictionaries-common (1.30.2) ...
Processing triggers for ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for tex-common (6.18) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
This may take some time... done.
Processing triggers for ca-certificates-java (20240118) ...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
fakeroot is already the newest version (1.36.2-1).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: user script /srv/workspace/pbuilder/27840/tmp/hooks/A99_set_merged_usr starting
Not re-configuring usrmerge for unstable
I: user script /srv/workspace/pbuilder/27840/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/reproducible-path/lammps-20240207+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lammps_20240207+dfsg-3_source.changes
dpkg-buildpackage: info: source package lammps
dpkg-buildpackage: info: source version 20240207+dfsg-3
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Santiago Vila <sanvila@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python3,sphinxdoc --sourcedirectory=cmake --builddirectory=/build/reproducible-path/lammps-20240207+dfsg/debian/build
dh_auto_clean -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build
debian/rules execute_after_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg'
rm -rf /build/reproducible-path/lammps-20240207+dfsg/debian/build
rm -rf .pybuild
rm -rf python/build
rm -rf python/lammps.egg-info
rm -f python/examples/log.lammps
if [ -d doc/html.orig ]; then \
rm -rf doc/html; \
mv doc/html.orig doc/html; \
fi
rm -rf doc/docenv doc/doctrees doc/utils/sphinx-config/conf.py
rm -rf doc/doxygen/xml doc/doxygen-warn.log doc/doxygen/Doxyfile
make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg'
dh_autoreconf_clean -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build
dh_clean -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build
debian/rules build
dh build --with python3,sphinxdoc --sourcedirectory=cmake --builddirectory=/build/reproducible-path/lammps-20240207+dfsg/debian/build
dh_update_autotools_config -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build
dh_autoreconf -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build
debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg'
dh_auto_configure -- \
-DBUILD_SHARED_LIBS=ON \
-DCMAKE_SKIP_INSTALL_RPATH=TRUE \
-DPKG_ASPHERE=ON \
-DPKG_ATC=ON \
-DPKG_AWPMD=ON \
-DPKG_BOCS=ON \
-DPKG_BODY=ON \
-DPKG_CG-DNA=ON \
-DPKG_CG-SPICA=ON \
-DPKG_CLASS2=ON \
-DPKG_COLLOID=ON \
-DPKG_COMPRESS=ON \
-DPKG_CORESHELL=ON \
-DPKG_EXTRA-PAIR=ON \
-DPKG_DIELECTRIC=ON \
-DPKG_DIFFRACTION=ON \
-DPKG_DIPOLE=ON \
-DPKG_DPD-BASIC=ON \
-DPKG_DRUDE=ON \
-DPKG_EFF=ON \
-DPKG_ELECTRODE=ON \
-DUSE_INTERNAL_LINALG=no \
-DPKG_FEP=ON \
-DPKG_GPU=OFF \
-DPKG_GRANULAR=ON \
-DPKG_H5MD=ON \
-DPKG_KIM=ON \
-DPKG_KSPACE=ON \
-DPKG_LATBOLTZ=ON \
-DPKG_MANIFOLD=ON \
-DPKG_MANYBODY=ON \
-DPKG_MC=ON \
-DPKG_MEAM=ON \
-DPKG_MGPT=ON \
-DPKG_MISC=ON \
-DPKG_MOFFF=ON \
-DPKG_MOLFILE=ON \
-DPKG_MPIIO=ON \
-DPKG_MOLECULE=ON \
-DPKG_NETCDF=ON \
-DPKG_OPENMP==ON \
-DPKG_OPT=ON \
-DPKG_ORIENT=ON \
-DPKG_PERI=ON \
-DPKG_PHONON=ON \
-DPKG_POEMS=ON \
-DPKG_PYTHON=ON \
-DPKG_QEQ=ON \
-DPKG_QTB=ON \
-DPKG_REAXFF=OFF \
-DPKG_REPLICA=ON \
-DPKG_RIGID=ON \
-DPKG_SHOCK=ON \
-DPKG_SMTBQ=ON \
-DPKG_SNAP=ON \
-DPKG_SPH=ON \
-DPKG_SRD=ON \
-DPKG_TALLY=ON \
-DPKG_UEF=ON \
-DPKG_VTK=ON \
-DPKG_VORONOI=ON
cd debian/build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DBUILD_SHARED_LIBS=ON -DCMAKE_SKIP_INSTALL_RPATH=TRUE -DPKG_ASPHERE=ON -DPKG_ATC=ON -DPKG_AWPMD=ON -DPKG_BOCS=ON -DPKG_BODY=ON -DPKG_CG-DNA=ON -DPKG_CG-SPICA=ON -DPKG_CLASS2=ON -DPKG_COLLOID=ON -DPKG_COMPRESS=ON -DPKG_CORESHELL=ON -DPKG_EXTRA-PAIR=ON -DPKG_DIELECTRIC=ON -DPKG_DIFFRACTION=ON -DPKG_DIPOLE=ON -DPKG_DPD-BASIC=ON -DPKG_DRUDE=ON -DPKG_EFF=ON -DPKG_ELECTRODE=ON -DUSE_INTERNAL_LINALG=no -DPKG_FEP=ON -DPKG_GPU=OFF -DPKG_GRANULAR=ON -DPKG_H5MD=ON -DPKG_KIM=ON -DPKG_KSPACE=ON -DPKG_LATBOLTZ=ON -DPKG_MANIFOLD=ON -DPKG_MANYBODY=ON -DPKG_MC=ON -DPKG_MEAM=ON -DPKG_MGPT=ON -DPKG_MISC=ON -DPKG_MOFFF=ON -DPKG_MOLFILE=ON -DPKG_MPIIO=ON -DPKG_MOLECULE=ON -DPKG_NETCDF=ON -DPKG_OPENMP==ON -DPKG_OPT=ON -DPKG_ORIENT=ON -DPKG_PERI=ON -DPKG_PHONON=ON -DPKG_POEMS=ON -DPKG_PYTHON=ON -DPKG_QEQ=ON -DPKG_QTB=ON -DPKG_REAXFF=OFF -DPKG_REPLICA=ON -DPKG_RIGID=ON -DPKG_SHOCK=ON -DPKG_SMTBQ=ON -DPKG_SNAP=ON -DPKG_SPH=ON -DPKG_SRD=ON -DPKG_TALLY=ON -DPKG_UEF=ON -DPKG_VTK=ON -DPKG_VORONOI=ON ../../cmake
-- The CXX compiler identification is GNU 14.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Git: /usr/bin/git (found version "2.45.2")
-- Running check for auto-generated files from make-based build system
-- Found MPI_CXX: /usr/lib/arm-linux-gnueabihf/mpich/lib/libmpichcxx.so (found version "4.1")
-- Found MPI: TRUE (found version "4.1")
-- Looking for C++ include omp.h
-- Looking for C++ include omp.h - found
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5") found components: CXX
-- The C compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /usr/lib/arm-linux-gnueabihf/libblas.so
-- Looking for cheev_
-- Looking for cheev_ - not found
-- Looking for cheev_
-- Looking for cheev_ - found
-- Found LAPACK: /usr/lib/arm-linux-gnueabihf/liblapack.so;/usr/lib/arm-linux-gnueabihf/libblas.so
-- Found JPEG: /usr/lib/arm-linux-gnueabihf/libjpeg.so (found version "62")
-- Found PNG: /usr/lib/arm-linux-gnueabihf/libpng.so (found version "1.6.44")
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.3.1")
-- Found GZIP: /usr/bin/gzip
-- Could NOT find FFMPEG (missing: FFMPEG_EXECUTABLE)
-- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1")
-- Checking for module 'fftw3'
-- Found fftw3, version 3.3.10
-- Found FFTW3: /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Found Python: /usr/bin/python3 (found version "3.12.8") found components: Interpreter
-- Found Python: /usr/bin/python3 (found version "3.12.8") found components: Interpreter Development Development.Module Development.Embed
-- Found VORO: /usr/lib/arm-linux-gnueabihf/libvoro++.so
-- Found NetCDF: /usr/lib/arm-linux-gnueabihf/libnetcdf.so
-- Trying to find PNetCDF using LD_LIBRARY_PATH (we're desperate)...
-- Could NOT find PNetCDF (missing: PNETCDF_LIBRARIES PNETCDF_INCLUDES)
-- Found Python3: /usr/bin/python3 (found suitable version "3.12.8", minimum required is "3.12") found components: Interpreter Development.Module Development.Embed
-- Found GLEW: /usr/lib/arm-linux-gnueabihf/libGLEW.so
-- Found OpenGL: /usr/lib/arm-linux-gnueabihf/libOpenGL.so found components: OpenGL GLX
-- Found MPI_C: /usr/lib/arm-linux-gnueabihf/mpich/lib/libmpich.so (found version "4.1")
-- Found MPI: TRUE (found version "4.1") found components: C
-- Found HDF5: /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libcrypto.so;/usr/lib/arm-linux-gnueabihf/libcurl.so;/usr/lib/arm-linux-gnueabihf/libpthread.a;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libdl.a;/usr/lib/arm-linux-gnueabihf/libm.so (found version "1.14.5") found components: C HL
-- Found NetCDF: /usr/include (found version "4.9.2")
-- Found OGG: /usr/lib/arm-linux-gnueabihf/libogg.so
-- Found THEORA: /usr/lib/arm-linux-gnueabihf/libtheora.so
-- Found LibPROJ: /usr/lib/arm-linux-gnueabihf/libproj.so (found version "9.5.1")
-- Found JsonCpp: /usr/lib/arm-linux-gnueabihf/libjsoncpp.so (found suitable version "1.9.6", minimum required is "0.7.0")
-- Found LibXml2: /usr/lib/arm-linux-gnueabihf/libxml2.so (found version "2.9.14")
-- Found GL2PS: /usr/lib/arm-linux-gnueabihf/libgl2ps.so (found suitable version "1.4.2", minimum required is "1.4.2")
-- Found SQLite3: /usr/include (found version "3.46.1")
-- Found Eigen3: /usr/include/eigen3 (found version "3.4.0")
-- Found X11: /usr/include
-- Looking for XOpenDisplay in /usr/lib/arm-linux-gnueabihf/libX11.so;/usr/lib/arm-linux-gnueabihf/libXext.so
-- Looking for XOpenDisplay in /usr/lib/arm-linux-gnueabihf/libX11.so;/usr/lib/arm-linux-gnueabihf/libXext.so - found
-- Looking for gethostbyname
-- Looking for gethostbyname - found
-- Looking for connect
-- Looking for connect - found
-- Looking for remove
-- Looking for remove - found
-- Looking for shmat
-- Looking for shmat - found
-- Looking for IceConnectionNumber in ICE
-- Looking for IceConnectionNumber in ICE - found
-- Found EXPAT: /usr/lib/arm-linux-gnueabihf/libexpat.so (found version "2.6.4")
-- Found double-conversion: /usr/lib/arm-linux-gnueabihf/libdouble-conversion.so
-- Found LZ4: /usr/lib/arm-linux-gnueabihf/liblz4.so (found version "1.9.4")
-- Found LZMA: /usr/lib/arm-linux-gnueabihf/liblzma.so (found version "5.6.3")
-- Found TIFF: /usr/lib/arm-linux-gnueabihf/libtiff.so (found version "4.5.1")
-- Could NOT find freetype (missing: freetype_DIR)
-- Found Freetype: /usr/lib/arm-linux-gnueabihf/libfreetype.so (found version "2.13.3")
-- Found utf8cpp: /usr/include/utf8cpp
-- Found CURL: /usr/lib/arm-linux-gnueabihf/libcurl.so (found version "8.11.1")
-- Found KIM-API: /usr/lib/arm-linux-gnueabihf/libkim-api.so.2.3.0
-- Checking for module 'libzstd>=1.4'
-- Found libzstd, version 1.5.6
-- Looking for C++ include cmath
-- Looking for C++ include cmath - found
-- Found HDF5: /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libcrypto.so;/usr/lib/arm-linux-gnueabihf/libcurl.so;/usr/lib/arm-linux-gnueabihf/libpthread.a;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libdl.a;/usr/lib/arm-linux-gnueabihf/libm.so (found version "1.14.5")
-- Generating style headers...
-- Generating package headers...
-- Generating lmpinstalledpkgs.h...
-- Found Python: /usr/bin/python3 (found version "3.12.8") found components: Interpreter
-- Found Python3: /usr/bin/python3 (found version "3.12.8") found components: Interpreter
-- Could NOT find ClangFormat (missing: ClangFormat_EXECUTABLE) (Required is at least version "8.0")
-- The following tools and libraries have been found and configured:
* Git
* OpenMP
* LAPACK
* BLAS
* FFTW3
* VORO
* Qt5Core (required version >= 5.15.15)
* Qt5Gui (required version >= 5.15.15)
* GLEW
* OpenGL
* MPI
* NetCDF
* THEORA
* OGG
* LibPROJ
* JsonCpp (required version >= 0.7.0)
* LibXml2
* GL2PS (required version >= 1.4.2)
* PNG
* SQLite3
* Qt5OpenGL
* Qt5Widgets
* Qt5 (required version >= 5.15)
* Eigen3
* X11
* EXPAT
* double-conversion
* LZ4
* LZMA
* JPEG
* TIFF
* freetype
* Freetype
* TBB
* Threads
* utf8cpp
* VTK
* CURL
* KIM-API (required version >= 2.2.0)
* ZLIB
* HDF5
* Python
* Python3
-- <<< Build configuration >>>
LAMMPS Version: 20240207
Operating System: Linux Debian
CMake Version: 3.31.2
Build type: None
Install path: /usr
Generator: Unix Makefiles using /usr/bin/gmake
-- Enabled packages: ASPHERE;ATC;AWPMD;BOCS;BODY;CG-DNA;CG-SPICA;CLASS2;COLLOID;COMPRESS;CORESHELL;DIELECTRIC;DIFFRACTION;DIPOLE;DPD-BASIC;DRUDE;EFF;ELECTRODE;EXTRA-PAIR;FEP;GRANULAR;H5MD;KIM;KSPACE;LATBOLTZ;MANIFOLD;MANYBODY;MC;MEAM;MGPT;MISC;MOFFF;MOLECULE;MOLFILE;NETCDF;OPENMP;OPT;ORIENT;PERI;PHONON;POEMS;PYTHON;QEQ;QTB;REPLICA;RIGID;SHOCK;SMTBQ;SPH;SRD;TALLY;UEF;VORONOI;VTK
-- <<< Compilers and Flags: >>>
-- C++ Compiler: /usr/bin/c++
Type: GNU
Version: 14.2.0
C++ Flags: -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2
Defines: LAMMPS_SMALLBIG;LAMMPS_MEMALIGN=64;LAMMPS_OMP_COMPAT=4;LAMMPS_JPEG;LAMMPS_PNG;LAMMPS_GZIP;FFT_FFTW3;FFT_FFTW_THREADS;LMP_PYTHON;LMP_HAS_NETCDF;NC_64BIT_DATA=0x0020;LAMMPS_VTK;LMP_KIM_CURL;LAMMPS_ZSTD;LMP_OPENMP
-- C compiler: /usr/bin/cc
Type: GNU
Version: 14.2.0
C Flags: -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2
-- <<< Linker flags: >>>
-- Executable name: lmp
-- Executable linker flags: -Wl,-z,relro
-- Shared library flags: -Wl,-z,relro
-- <<< MPI flags >>>
-- MPI_defines: MPICH_SKIP_MPICXX;OMPI_SKIP_MPICXX;_MPICC_H
-- MPI includes: /usr/lib/arm-linux-gnueabihf/mpich/include
-- MPI libraries: /usr/lib/arm-linux-gnueabihf/mpich/lib/libmpichcxx.so;/usr/lib/arm-linux-gnueabihf/mpich/lib/libmpich.so;
-- <<< FFT settings >>>
-- Primary FFT lib: FFTW3
-- Using double precision FFTs
-- Using threaded FFTs
-- Using builtin distributed FFT algorithms
-- Configuring done (105.3s)
-- Generating done (4.5s)
-- Build files have been written to: /build/reproducible-path/lammps-20240207+dfsg/debian/build
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[ 1%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/fastmatrixops.cpp.o
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In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd.h:151,
from /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd_split.h:65,
from /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd_split.cpp:1:
/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include/wavepacket.h: In member function 'void WavePacket::int2phys_der(d_it, dfdx_it, dfdp_it, dfdw_it, dfdpw_it, double) const [with operation = std::minus; d_it = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; dfdx_it = double*; dfdp_it = double*; dfdw_it = double*; dfdpw_it = double*]':
/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include/wavepacket.h:179:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
179 | void int2phys_der(d_it dfdi_,dfdx_it dfdx, dfdp_it dfdp, dfdw_it dfdw, dfdpw_it dfdpw, double h_p=h_plank) const {
| ^~~~~~~~~~~~
/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd_split.cpp: In member function 'void AWPMD_split::get_el_forces(int, Vector_3P, Vector_3P, double*, double*, Vector_2P)':
/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd_split.cpp:336:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
336 | wk.int2phys_der< minus >(E_der[s1].begin()+indw1,(double *)&fe_x[iv1+k1],(double *)&fe_p[iv1+k1],&fe_w[iv1+k1],&fe_pw[iv1+k1], 1./one_h);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp:2:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
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/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/mat3x3.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/mat3x3.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/mat3x3.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/mat3x3.cpp
[ 2%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.cpp
[ 2%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/mat4x4.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/mat4x4.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/mat4x4.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/mat4x4.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/mat4x4.cpp
[ 2%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/mat6x6.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/mat6x6.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/mat6x6.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/mat6x6.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/mat6x6.cpp
[ 2%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/matrix.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/matrix.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/matrix.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/matrix.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/matrix.cpp
[ 2%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/matrixfun.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/matrixfun.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/matrixfun.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/matrixfun.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/matrixfun.cpp
[ 2%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/mixedjoint.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/mixedjoint.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/mixedjoint.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/mixedjoint.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/mixedjoint.cpp
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.h:5,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.cpp:2:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
[ 2%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/norm.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/norm.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/norm.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/norm.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/norm.cpp
[ 2%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/onbody.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/onbody.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/onbody.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/onbody.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/onbody.cpp
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 2%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/onfunctions.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/onfunctions.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/onfunctions.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/onfunctions.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/onfunctions.cpp
[ 2%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/onsolver.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/onsolver.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/onsolver.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/onsolver.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/onsolver.cpp
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/usr/bin/cmake -P CMakeFiles/awpmd.dir/cmake_clean_target.cmake
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/usr/bin/ar qc liblammps_awpmd.a "CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/src/logexc.cpp.o" "CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd.cpp.o" "CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o"
/usr/bin/ranlib liblammps_awpmd.a
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cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/compute.h.dir/DependInfo.cmake "--color="
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cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/dihedral.h.dir/DependInfo.cmake "--color="
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cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/domain.h.dir/DependInfo.cmake "--color="
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cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/error.h.dir/DependInfo.cmake "--color="
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cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/exceptions.h.dir/DependInfo.cmake "--color="
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cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/fix.h.dir/DependInfo.cmake "--color="
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[ 4%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/particle.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/particle.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/particle.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/particle.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/particle.cpp
make -f CMakeFiles/force.h.dir/build.make CMakeFiles/force.h.dir/depend
make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build'
cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/force.h.dir/DependInfo.cmake "--color="
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[ 4%] Built target force.h
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make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build'
cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/group.h.dir/DependInfo.cmake "--color="
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[ 4%] Built target group.h
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make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build'
cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/improper.h.dir/DependInfo.cmake "--color="
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make -f CMakeFiles/improper.h.dir/build.make CMakeFiles/improper.h.dir/build
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cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/input.h.dir/DependInfo.cmake "--color="
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[ 4%] Built target input.h
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cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/info.h.dir/DependInfo.cmake "--color="
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[ 5%] Built target info.h
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cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/kspace.h.dir/DependInfo.cmake "--color="
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make -f CMakeFiles/kspace.h.dir/build.make CMakeFiles/kspace.h.dir/build
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[ 5%] Built target kspace.h
make -f CMakeFiles/lammps.h.dir/build.make CMakeFiles/lammps.h.dir/depend
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cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/lammps.h.dir/DependInfo.cmake "--color="
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[ 5%] Built target lammps.h
make -f CMakeFiles/lattice.h.dir/build.make CMakeFiles/lattice.h.dir/depend
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cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/lattice.h.dir/DependInfo.cmake "--color="
[ 5%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/poemsobject.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/poemsobject.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/poemsobject.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/poemsobject.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/poemsobject.cpp
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make -f CMakeFiles/lattice.h.dir/build.make CMakeFiles/lattice.h.dir/build
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[ 5%] Generating includes/lammps/lattice.h
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[ 5%] Built target lattice.h
[ 5%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMass.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMass.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMass.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMass.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMass.cpp
[ 5%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/poemstreenode.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/poemstreenode.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/poemstreenode.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/poemstreenode.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/poemstreenode.cpp
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/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/point.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/point.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/point.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/point.cpp
[ 5%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentum.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentum.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentum.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentum.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentum.cpp
[ 5%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/prismaticjoint.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/prismaticjoint.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/prismaticjoint.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/prismaticjoint.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/prismaticjoint.cpp
[ 5%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/revolutejoint.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/revolutejoint.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/revolutejoint.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/revolutejoint.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/revolutejoint.cpp
[ 5%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/rigidbody.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/rigidbody.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/rigidbody.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/rigidbody.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/rigidbody.cpp
[ 5%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/rowmatrix.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/rowmatrix.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/rowmatrix.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/rowmatrix.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/rowmatrix.cpp
[ 5%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/solver.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/solver.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/solver.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/solver.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/solver.cpp
[ 5%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.cpp
[ 5%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/sphericaljoint.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/sphericaljoint.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/sphericaljoint.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/sphericaljoint.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/sphericaljoint.cpp
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentum.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentum.cpp:2:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
[ 5%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/system.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/system.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/system.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/system.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/system.cpp
[ 5%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect3.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect3.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect3.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect3.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect3.cpp
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 5%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect4.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect4.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect4.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect4.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect4.cpp
[ 6%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect6.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect6.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect6.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect6.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect6.cpp
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.h:5,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.cpp:2:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
[ 6%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.cpp
[ 6%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualcolmatrix.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualcolmatrix.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualcolmatrix.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualcolmatrix.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualcolmatrix.cpp
[ 6%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp
[ 6%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualmatrix.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualmatrix.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualmatrix.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualmatrix.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualmatrix.cpp
[ 6%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualrowmatrix.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualrowmatrix.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualrowmatrix.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualrowmatrix.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualrowmatrix.cpp
[ 6%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/workspace.cpp.o
/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/workspace.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/workspace.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/workspace.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/workspace.cpp
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 6%] Linking CXX static library liblammps_poems.a
/usr/bin/cmake -P CMakeFiles/poems.dir/cmake_clean_target.cmake
/usr/bin/cmake -E cmake_link_script CMakeFiles/poems.dir/link.txt --verbose=1
/usr/bin/ar qc liblammps_poems.a "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/body.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/body23joint.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/colmatmap.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/colmatrix.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/eulerparameters.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/fastmatrixops.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/fixedpoint.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/freebodyjoint.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/inertialframe.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/joint.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/mat3x3.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/mat4x4.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/mat6x6.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/matrix.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/matrixfun.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/mixedjoint.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/norm.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/onbody.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/onfunctions.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/onsolver.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/particle.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/poemsobject.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/poemstreenode.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/point.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/prismaticjoint.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/revolutejoint.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/rigidbody.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/rowmatrix.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/solver.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/sphericaljoint.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/system.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect3.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect4.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect6.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualcolmatrix.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualmatrix.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualrowmatrix.cpp.o" "CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/workspace.cpp.o"
/usr/bin/ranlib liblammps_poems.a
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[ 6%] Built target poems
make -f CMakeFiles/library.h.dir/build.make CMakeFiles/library.h.dir/depend
make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build'
cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/library.h.dir/DependInfo.cmake "--color="
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make -f CMakeFiles/library.h.dir/build.make CMakeFiles/library.h.dir/build
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[ 6%] Generating includes/lammps/library.h
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[ 6%] Built target library.h
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make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build'
cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/lmppython.h.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build'
make -f CMakeFiles/lmppython.h.dir/build.make CMakeFiles/lmppython.h.dir/build
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[ 6%] Generating includes/lammps/lmppython.h
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[ 6%] Built target lmppython.h
make -f CMakeFiles/lmptype.h.dir/build.make CMakeFiles/lmptype.h.dir/depend
make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build'
cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/lmptype.h.dir/DependInfo.cmake "--color="
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make -f CMakeFiles/lmptype.h.dir/build.make CMakeFiles/lmptype.h.dir/build
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[ 6%] Generating includes/lammps/lmptype.h
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make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build'
cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/memory.h.dir/DependInfo.cmake "--color="
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[ 6%] Generating includes/lammps/memory.h
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[ 6%] Built target memory.h
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make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build'
cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/modify.h.dir/DependInfo.cmake "--color="
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[ 6%] Generating includes/lammps/modify.h
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[ 6%] Built target modify.h
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make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build'
cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/neighbor.h.dir/DependInfo.cmake "--color="
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make -f CMakeFiles/neighbor.h.dir/build.make CMakeFiles/neighbor.h.dir/build
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[ 6%] Built target neighbor.h
make -f CMakeFiles/neigh_list.h.dir/build.make CMakeFiles/neigh_list.h.dir/depend
make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build'
cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/neigh_list.h.dir/DependInfo.cmake "--color="
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make -f CMakeFiles/neigh_list.h.dir/build.make CMakeFiles/neigh_list.h.dir/build
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[ 7%] Built target neigh_list.h
make -f CMakeFiles/output.h.dir/build.make CMakeFiles/output.h.dir/depend
make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build'
cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/output.h.dir/DependInfo.cmake "--color="
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make -f CMakeFiles/output.h.dir/build.make CMakeFiles/output.h.dir/build
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[ 7%] Built target output.h
make -f CMakeFiles/pair.h.dir/build.make CMakeFiles/pair.h.dir/depend
make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build'
cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/pair.h.dir/DependInfo.cmake "--color="
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make -f CMakeFiles/pair.h.dir/build.make CMakeFiles/pair.h.dir/build
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[ 7%] Generating includes/lammps/pair.h
/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/pair.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/pair.h
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[ 7%] Built target pair.h
make -f CMakeFiles/platform.h.dir/build.make CMakeFiles/platform.h.dir/depend
make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build'
cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/platform.h.dir/DependInfo.cmake "--color="
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make -f CMakeFiles/platform.h.dir/build.make CMakeFiles/platform.h.dir/build
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[ 7%] Generating includes/lammps/platform.h
/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/platform.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/platform.h
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[ 7%] Built target platform.h
make -f CMakeFiles/pointers.h.dir/build.make CMakeFiles/pointers.h.dir/depend
make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build'
cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/pointers.h.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build'
make -f CMakeFiles/pointers.h.dir/build.make CMakeFiles/pointers.h.dir/build
make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build'
[ 7%] Generating includes/lammps/pointers.h
/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/pointers.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/pointers.h
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[ 7%] Built target pointers.h
make -f CMakeFiles/region.h.dir/build.make CMakeFiles/region.h.dir/depend
make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build'
cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/region.h.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build'
make -f CMakeFiles/region.h.dir/build.make CMakeFiles/region.h.dir/build
make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build'
[ 7%] Generating includes/lammps/region.h
/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/region.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/region.h
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[ 7%] Built target region.h
make -f CMakeFiles/timer.h.dir/build.make CMakeFiles/timer.h.dir/depend
make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build'
cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/timer.h.dir/DependInfo.cmake "--color="
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/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferKernel.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferKernel.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferKernel.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferKernel.cpp
/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/timer.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/timer.h
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In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.h:6,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp:2:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
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[ 8%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.h:6,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferKernel.h:6,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferKernel.cpp:2:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.h:6,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.h:5,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp:2:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 8%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomToMoleculeTransfer.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomToMoleculeTransfer.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomToMoleculeTransfer.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomToMoleculeTransfer.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomToMoleculeTransfer.cpp
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 8%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.cpp
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.cpp:2:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/BodyForce.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/BodyForce.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/BodyForce.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/BodyForce.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/BodyForce.cpp
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.h:6,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.cpp:2:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp
[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp
[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp
[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp:1:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.h:4,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp:1:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ConcentrationRegulator.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ConcentrationRegulator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ConcentrationRegulator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ConcentrationRegulator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ConcentrationRegulator.cpp
[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElasticTimeIntegrator.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElasticTimeIntegrator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElasticTimeIntegrator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElasticTimeIntegrator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElasticTimeIntegrator.cpp
[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp
In file included from /usr/include/c++/14/set:62,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:4,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.h:6,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.h:4,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp:1:
/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/map:63,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:6:
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]',
inlined from 'T& ATC_matrix::SparseVector<T>::operator()(ATC_matrix::INDEX, ATC_matrix::INDEX) [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseVector-inl.h:120:15:
/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]',
inlined from 'T& ATC_matrix::SparseVector<T>::operator()(ATC_matrix::INDEX, ATC_matrix::INDEX) [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseVector-inl.h:120:15,
inlined from 'T& ATC_matrix::SparseVector<T>::operator[](ATC_matrix::INDEX) [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseVector-inl.h:132:17:
/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/map:62,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.h:4,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp:1:
/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/map:63:
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'ATC::ElectronChargeDensityFermiDirac::ElectronChargeDensityFermiDirac(std::fstream&, std::map<std::__cxx11::basic_string<char>, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp:104:32:
/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
533 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
534 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'ATC::ElectronChargeDensityFermiDirac::ElectronChargeDensityFermiDirac(std::fstream&, std::map<std::__cxx11::basic_string<char>, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp:109:41:
/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
533 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
534 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'ATC::ElectronChargeDensityFermiDirac::ElectronChargeDensityFermiDirac(std::fstream&, std::map<std::__cxx11::basic_string<char>, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp:113:39:
/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
533 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
534 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'ATC::ElectronChargeDensityFermiDirac::ElectronChargeDensityFermiDirac(std::fstream&, std::map<std::__cxx11::basic_string<char>, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp:118:43:
/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
533 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
534 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'ATC::ElectronChargeDensityFermiDirac::ElectronChargeDensityFermiDirac(std::fstream&, std::map<std::__cxx11::basic_string<char>, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp:123:39:
/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
533 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
534 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'ATC::ElectronChargeDensityLinear::ElectronChargeDensityLinear(std::fstream&, std::map<std::__cxx11::basic_string<char>, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp:49:31:
/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
533 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
534 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'ATC::ElectronChargeDensityExponential::ElectronChargeDensityExponential(std::fstream&, std::map<std::__cxx11::basic_string<char>, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp:70:43:
/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
533 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
534 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'ATC::ElectronChargeDensityExponential::ElectronChargeDensityExponential(std::fstream&, std::map<std::__cxx11::basic_string<char>, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp:74:36:
/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
533 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
534 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'ATC::ElectronChargeDensityExponential::ElectronChargeDensityExponential(std::fstream&, std::map<std::__cxx11::basic_string<char>, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp:78:41:
/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
533 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
534 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]',
inlined from 'virtual void ATC::ChargeRegulatorMethodEffectiveCharge::initialize()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp:631:33:
/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronDragPower.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronDragPower.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronDragPower.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronDragPower.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronDragPower.cpp
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]',
inlined from 'T& ATC_matrix::SparseVector<T>::operator()(ATC_matrix::INDEX, ATC_matrix::INDEX) [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseVector-inl.h:120:15,
inlined from 'void ATC::ChargeRegulatorMethod::set_greens_functions()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp:237:29:
/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]',
inlined from 'void ATC::ChargeRegulatorMethodEffectiveCharge::apply_local_forces()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp:681:47:
/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]',
inlined from 'T& ATC_matrix::SparseVector<T>::operator()(ATC_matrix::INDEX, ATC_matrix::INDEX) [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseVector-inl.h:120:15,
inlined from 'void ATC::ChargeRegulatorMethodEffectiveCharge::apply_local_forces()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp:708:37:
/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]',
inlined from 'void ATC_matrix::SparseVector<T>::add_scaled(ATC_matrix::SparseVector<T>&, const T&) [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseVector-inl.h:149:9,
inlined from 'void ATC::ChargeRegulatorMethodEffectiveCharge::apply_local_forces()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp:714:40:
/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.h:3,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/DenseMatrix.h:4,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:4,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.h:4,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElasticTimeIntegrator.h:6,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElasticTimeIntegrator.cpp:2:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.h:6,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp:1:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatCapacity.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatCapacity.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatCapacity.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatCapacity.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatCapacity.cpp
[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatFlux.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatFlux.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatFlux.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatFlux.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatFlux.cpp
In file included from /usr/include/c++/14/map:62,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.h:4:
/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/map:63:
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'ATC::ElectronFluxLinear::ElectronFluxLinear(std::fstream&, std::map<std::__cxx11::basic_string<char>, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp:39:37:
/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
533 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
534 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'ATC::ElectronFluxLinear::ElectronFluxLinear(std::fstream&, std::map<std::__cxx11::basic_string<char>, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp:43:40:
/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
533 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
534 | std::tuple<>());
| ~~~~~~~~~~~~~~~
[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronPhononExchange.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronPhononExchange.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronPhononExchange.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronPhononExchange.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronPhononExchange.cpp
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'ATC::ElectronFluxThermopower::ElectronFluxThermopower(std::fstream&, std::map<std::__cxx11::basic_string<char>, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp:69:37:
/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
533 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
534 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]',
inlined from 'ATC::ElectronFluxThermopower::ElectronFluxThermopower(std::fstream&, std::map<std::__cxx11::basic_string<char>, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp:73:39:
/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' changed in GCC 7.1
532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
533 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
534 | std::tuple<>());
| ~~~~~~~~~~~~~~~
[ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.cpp
[ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelDriftDiffusion.cpp
[ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.cpp
[ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.cpp
[ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.cpp
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.h:8,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.h:6,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelDriftDiffusion.h:8,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.h:8,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.h:6,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.cpp:2:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.h:8,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.cpp:2:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.h:6,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.cpp:3:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.cpp
[ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Interpolate.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Interpolate.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Interpolate.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Interpolate.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Interpolate.cpp
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.h:8,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Interpolate.cpp:3:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
[ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.h:9,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.cpp:1:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
[ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.h:8,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.h:6,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp:1:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
[ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array2D.h:9,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.h:5:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.h:6,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp:1:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Function.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Function.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Function.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Function.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Function.cpp
[ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp
[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp
[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp
[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp
[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.h:6,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp:2:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
In file included from /usr/include/c++/14/string:51,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array2D.h:6,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.h:4,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp:1:
/usr/include/c++/14/bits/stl_algobase.h: In function '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Node*, vector<Node> >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const Node>]':
/usr/include/c++/14/bits/stl_algobase.h:2093:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
2093 | __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~
/usr/include/c++/14/bits/stl_algobase.h:2093:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array2D.h:9:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Node*, vector<Node> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(Node, Node)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Node*, vector<Node> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Node, Node)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Node*, vector<Node> >; _Distance = int; _Tp = Node; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Node, Node)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Node*, vector<Node> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Node, Node)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Node*, vector<Node> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Node, Node)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<Node*, vector<Node> >; _Compare = bool (*)(Node, Node)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'KD_Tree::KD_Tree(std::vector<Node>*, std::vector<std::pair<int, std::vector<Node> > >*, int)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp:47:7:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Node*, vector<Node> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Node, Node)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Node*, vector<Node> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Node, Node)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<Node*, vector<Node> >; _Compare = bool (*)(Node, Node)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'KD_Tree::KD_Tree(std::vector<Node>*, std::vector<std::pair<int, std::vector<Node> > >*, int)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp:47:7:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator<Node*, vector<Node> >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const Node>]',
inlined from '_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator<Node*, vector<Node> >; _Tp = Node]' at /usr/include/c++/14/bits/stl_algo.h:3850:28,
inlined from 'KD_Tree::KD_Tree(std::vector<Node>*, std::vector<std::pair<int, std::vector<Node> > >*, int)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp:70:17:
/usr/include/c++/14/bits/stl_algobase.h:2146:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
2146 | return __find_if(__first, __last, __pred,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2147 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator<Node*, vector<Node> >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const Node>]',
inlined from '_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator<Node*, vector<Node> >; _Tp = Node]' at /usr/include/c++/14/bits/stl_algo.h:3850:28,
inlined from 'KD_Tree::KD_Tree(std::vector<Node>*, std::vector<std::pair<int, std::vector<Node> > >*, int)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp:76:17:
/usr/include/c++/14/bits/stl_algobase.h:2146:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
2146 | return __find_if(__first, __last, __pred,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2147 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KernelFunction.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KernelFunction.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KernelFunction.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KernelFunction.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KernelFunction.cpp
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array2D.h:9,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.h:5:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.h:3,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/DenseMatrix.h:4,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:4,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.h:5,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp:2:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<pair<int, double>*, vector<pair<int, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(pair<int, double>, pair<int, double>)>]':
/usr/include/c++/14/bits/stl_algo.h:85:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
85 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:85:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:85:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:85:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<int, double>*, vector<pair<int, double> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(pair<int, double>, pair<int, double>)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<int, double>*, vector<pair<int, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(pair<int, double>, pair<int, double>)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<int, double>*, vector<pair<int, double> > >; _Distance = int; _Tp = pair<int, double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(pair<int, double>, pair<int, double>)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<int, double>*, vector<pair<int, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(pair<int, double>, pair<int, double>)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<int, double>*, vector<pair<int, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(pair<int, double>, pair<int, double>)>]',
inlined from 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<int, double>*, vector<pair<int, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(pair<int, double>, pair<int, double>)>]' at /usr/include/c++/14/bits/stl_algo.h:1889:38:
/usr/include/c++/14/bits/stl_algo.h:1855:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
1855 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1856 | __comp);
| ~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1855:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<int, double>*, vector<pair<int, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(pair<int, double>, pair<int, double>)>]':
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<int, double>*, vector<pair<int, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(pair<int, double>, pair<int, double>)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<int, double>*, vector<pair<int, double> > >; _Compare = bool (*)(pair<int, double>, pair<int, double>)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'int ATC::GhostModifierDampedHarmonicLayers::find_layers()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp:580:14:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<int, double>*, vector<pair<int, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(pair<int, double>, pair<int, double>)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<int, double>*, vector<pair<int, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(pair<int, double>, pair<int, double>)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<int, double>*, vector<pair<int, double> > >; _Compare = bool (*)(pair<int, double>, pair<int, double>)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'int ATC::GhostModifierDampedHarmonicLayers::find_layers()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp:580:14:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Kinetostat.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Kinetostat.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Kinetostat.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Kinetostat.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Kinetostat.cpp
[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.cpp
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.h:6,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.h:4,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp:1:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:25,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.cpp:2:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.cpp
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MPI_Wrappers.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MPI_Wrappers.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MPI_Wrappers.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MPI_Wrappers.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MPI_Wrappers.cpp
[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp
[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.cpp
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.h:5,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.cpp:2:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.h:6,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Kinetostat.h:4,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Kinetostat.cpp:1:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MeshReader.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MeshReader.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MeshReader.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MeshReader.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MeshReader.cpp
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp:1:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MoleculeSet.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MoleculeSet.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MoleculeSet.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MoleculeSet.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MoleculeSet.cpp
[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/NonLinearSolver.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/NonLinearSolver.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/NonLinearSolver.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/NonLinearSolver.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/NonLinearSolver.cpp
[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/NonLinearSolver.h:5,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/NonLinearSolver.cpp:2:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp
[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp
[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParSparseMatrix.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParSparseMatrix.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParSparseMatrix.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParSparseMatrix.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParSparseMatrix.cpp
[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.cpp
[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerPairQuantity.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerPairQuantity.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerPairQuantity.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerPairQuantity.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerPairQuantity.cpp
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.h:3,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/DenseMatrix.h:4,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:4,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix.h:4,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParSparseMatrix.h:6,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParSparseMatrix.cpp:1:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.cpp
[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.cpp
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:25,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantity.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.h:6,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.cpp:2:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:25,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerPairQuantity.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerPairQuantity.cpp:1:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.h:5,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.h:6,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.cpp:1:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.h:8,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.cpp:1:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PolynomialSolver.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PolynomialSolver.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PolynomialSolver.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PolynomialSolver.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PolynomialSolver.cpp
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array2D.h:9,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.h:5:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PrescribedDataManager.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PrescribedDataManager.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PrescribedDataManager.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PrescribedDataManager.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PrescribedDataManager.cpp
[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Quadrature.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Quadrature.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Quadrature.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Quadrature.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Quadrature.cpp
[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/SchrodingerSolver.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/SchrodingerSolver.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/SchrodingerSolver.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/SchrodingerSolver.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SchrodingerSolver.cpp
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array2D.h:9,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.h:7:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/SpeciesTimeIntegrator.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/SpeciesTimeIntegrator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/SpeciesTimeIntegrator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/SpeciesTimeIntegrator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SpeciesTimeIntegrator.cpp
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Stress.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Stress.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Stress.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Stress.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Stress.cpp
[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp
[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array2D.h:9,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SchrodingerSolver.h:5,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SchrodingerSolver.cpp:2:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Stress.h:8,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Stress.cpp:1:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.h:6,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.h:4,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp:1:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.cpp
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.h:3,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/DenseMatrix.h:4,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:4,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.h:4,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.h:5,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp:2:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp
[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp
[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Vector.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Vector.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Vector.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Vector.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Vector.cpp
[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:25,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantity.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.h:6,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.h:6,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp:2:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.h:8,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp:1:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:25,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantity.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.h:6,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.h:6,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.h:11,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp:2:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp
[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp
[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp
[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp
[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquation.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp:1:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp
In file included from /usr/include/c++/14/algorithm:61,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14:
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1750 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1770 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/14/bits/stl_algo.h:61:
/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp
/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1876 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1905 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1906 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1907 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]' at /usr/include/c++/14/bits/stl_algo.h:1908:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, vector<ATC_matrix::TRI_COORD<double>, allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)]' at /usr/include/c++/14/bits/stl_algo.h:4805:18,
inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12:
/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
1822 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquation.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.h:7,
from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp:1:
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector<T>::operator[](ATC_matrix::INDEX) [with T = double]':
/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull]
117 | return (*_baseV)(i);
| ~~~~~~~~~^~~
[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp.o
/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp
[ 14%] Linking CXX static library liblammps_atc.a
/usr/bin/cmake -P CMakeFiles/atc.dir/cmake_clean_target.cmake
/usr/bin/cmake -E cmake_link_script CMakeFiles/atc.dir/link.txt --verbose=1
/usr/bin/ar qc liblammps_atc.a "CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp.o" "CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.cpp.o" "CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMass.cpp.o" "CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentum.cpp.o" "CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.cpp.o" "CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.cpp.o" "CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp.o" "CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferKernel.cpp.o" "CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp.o" 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/build/reproducible-path/lammps-20240207+dfsg/src/angle_write.cpp: In member function 'virtual void LAMMPS_NS::AngleWrite::command(int, char**)':
/build/reproducible-path/lammps-20240207+dfsg/src/angle_write.cpp:153:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
153 | fgets(line, MAXLINE, coeffs);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
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[ 22%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/delete_atoms.cpp.o
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/build/reproducible-path/lammps-20240207+dfsg/src/dihedral_write.cpp: In member function 'virtual void LAMMPS_NS::DihedralWrite::command(int, char**)':
/build/reproducible-path/lammps-20240207+dfsg/src/dihedral_write.cpp:154:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
154 | fgets(line, MAXLINE, coeffs);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
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[ 31%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/irregular.cpp.o
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[ 32%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/kspace.cpp.o
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[ 32%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/kspace_deprecated.cpp.o
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[ 32%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/label_map.cpp.o
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[ 32%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/lammps.cpp.o
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[ 32%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/min.cpp.o
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[ 34%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/nbin_standard.cpp.o
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[ 34%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/neigh_list.cpp.o
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[ 34%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/neigh_request.cpp.o
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[ 34%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/neighbor.cpp.o
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[ 35%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/npair_skip_respa.cpp.o
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[ 38%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/pair_yukawa.cpp.o
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[ 38%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/pair_zero.cpp.o
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[ 38%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/platform.cpp.o
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[ 39%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/random_mars.cpp.o
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[ 39%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/rcb.cpp.o
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[ 39%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/read_dump.cpp.o
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[ 39%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/reader.cpp.o
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[ 39%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/reader_xyz.cpp.o
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[ 40%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/replicate.cpp.o
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[ 40%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/rerun.cpp.o
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[ 40%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/reset_atoms_id.cpp.o
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[ 41%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/tabular_function.cpp.o
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[ 41%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/thermo.cpp.o
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[ 41%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/timer.cpp.o
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[ 41%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/tokenizer.cpp.o
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[ 41%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/universe.cpp.o
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[ 41%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/update.cpp.o
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[ 42%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/variable.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION -I/build/reproducible-path/lammps-20240207+dfsg/src/DIPOLE -I/build/reproducible-path/lammps-20240207+dfsg/src/DPD-BASIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DRUDE -I/build/reproducible-path/lammps-20240207+dfsg/src/EFF -I/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE -I/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR -I/build/reproducible-path/lammps-20240207+dfsg/src/FEP -I/build/reproducible-path/lammps-20240207+dfsg/src/GRANULAR -I/build/reproducible-path/lammps-20240207+dfsg/src/H5MD -I/build/reproducible-path/lammps-20240207+dfsg/src/KIM -I/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE -I/build/reproducible-path/lammps-20240207+dfsg/src/LATBOLTZ -I/build/reproducible-path/lammps-20240207+dfsg/src/MANIFOLD -I/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY -I/build/reproducible-path/lammps-20240207+dfsg/src/MC -I/build/reproducible-path/lammps-20240207+dfsg/src/MEAM -I/build/reproducible-path/lammps-20240207+dfsg/src/MGPT -I/build/reproducible-path/lammps-20240207+dfsg/src/MISC -I/build/reproducible-path/lammps-20240207+dfsg/src/MOFFF -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLECULE -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLFILE -I/build/reproducible-path/lammps-20240207+dfsg/src/NETCDF -I/build/reproducible-path/lammps-20240207+dfsg/src/ORIENT -I/build/reproducible-path/lammps-20240207+dfsg/src/PERI -I/build/reproducible-path/lammps-20240207+dfsg/src/PHONON -I/build/reproducible-path/lammps-20240207+dfsg/src/POEMS -I/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON -I/build/reproducible-path/lammps-20240207+dfsg/src/QEQ -I/build/reproducible-path/lammps-20240207+dfsg/src/QTB -I/build/reproducible-path/lammps-20240207+dfsg/src/REPLICA -I/build/reproducible-path/lammps-20240207+dfsg/src/RIGID -I/build/reproducible-path/lammps-20240207+dfsg/src/SHOCK -I/build/reproducible-path/lammps-20240207+dfsg/src/SMTBQ -I/build/reproducible-path/lammps-20240207+dfsg/src/SPH -I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/python3.12 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.3 -isystem /usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/variable.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/variable.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/variable.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/variable.cpp
[ 42%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/velocity.cpp.o
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/build/reproducible-path/lammps-20240207+dfsg/src/variable.cpp: In member function 'int LAMMPS_NS::Variable::next(int, char**)':
/build/reproducible-path/lammps-20240207+dfsg/src/variable.cpp:787:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
787 | fread(buf,1,64,fp);
| ~~~~~^~~~~~~~~~~~~
[ 42%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/verlet.cpp.o
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[ 42%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/write_dump.cpp.o
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[ 42%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/write_restart.cpp.o
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[ 44%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/BODY/body_rounded_polygon.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION -I/build/reproducible-path/lammps-20240207+dfsg/src/DIPOLE -I/build/reproducible-path/lammps-20240207+dfsg/src/DPD-BASIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DRUDE -I/build/reproducible-path/lammps-20240207+dfsg/src/EFF -I/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE -I/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR -I/build/reproducible-path/lammps-20240207+dfsg/src/FEP -I/build/reproducible-path/lammps-20240207+dfsg/src/GRANULAR -I/build/reproducible-path/lammps-20240207+dfsg/src/H5MD -I/build/reproducible-path/lammps-20240207+dfsg/src/KIM -I/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE -I/build/reproducible-path/lammps-20240207+dfsg/src/LATBOLTZ -I/build/reproducible-path/lammps-20240207+dfsg/src/MANIFOLD -I/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY -I/build/reproducible-path/lammps-20240207+dfsg/src/MC -I/build/reproducible-path/lammps-20240207+dfsg/src/MEAM -I/build/reproducible-path/lammps-20240207+dfsg/src/MGPT -I/build/reproducible-path/lammps-20240207+dfsg/src/MISC -I/build/reproducible-path/lammps-20240207+dfsg/src/MOFFF -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLECULE -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLFILE -I/build/reproducible-path/lammps-20240207+dfsg/src/NETCDF -I/build/reproducible-path/lammps-20240207+dfsg/src/ORIENT -I/build/reproducible-path/lammps-20240207+dfsg/src/PERI -I/build/reproducible-path/lammps-20240207+dfsg/src/PHONON -I/build/reproducible-path/lammps-20240207+dfsg/src/POEMS -I/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON -I/build/reproducible-path/lammps-20240207+dfsg/src/QEQ -I/build/reproducible-path/lammps-20240207+dfsg/src/QTB -I/build/reproducible-path/lammps-20240207+dfsg/src/REPLICA -I/build/reproducible-path/lammps-20240207+dfsg/src/RIGID -I/build/reproducible-path/lammps-20240207+dfsg/src/SHOCK -I/build/reproducible-path/lammps-20240207+dfsg/src/SMTBQ -I/build/reproducible-path/lammps-20240207+dfsg/src/SPH -I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/python3.12 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.3 -isystem /usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/BODY/body_rounded_polygon.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/BODY/body_rounded_polygon.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/BODY/body_rounded_polygon.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/BODY/body_rounded_polygon.cpp
In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd.h:151,
from /build/reproducible-path/lammps-20240207+dfsg/src/AWPMD/pair_awpmd_cut.cpp:34:
/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include/wavepacket.h: In member function 'void WavePacket::int2phys_der(d_it, dfdx_it, dfdp_it, dfdw_it, dfdpw_it, double) const [with operation = eq_minus_second; d_it = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; dfdx_it = double*; dfdp_it = double*; dfdw_it = double*; dfdpw_it = double*]':
/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include/wavepacket.h:179:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
179 | void int2phys_der(d_it dfdi_,dfdx_it dfdx, dfdp_it dfdp, dfdw_it dfdw, dfdpw_it dfdpw, double h_p=h_plank) const {
| ^~~~~~~~~~~~
In file included from /build/reproducible-path/lammps-20240207+dfsg/src/AWPMD/pair_awpmd_cut.cpp:35:
In member function 'void AWPMD_split::get_wp_force(int, int, Vector_3P, Vector_3P, double*, double*, Vector_2P)',
inlined from 'virtual void LAMMPS_NS::PairAWPMDCut::compute(int, int)' at /build/reproducible-path/lammps-20240207+dfsg/src/AWPMD/pair_awpmd_cut.cpp:284:25:
/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd_split.h:196:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
196 | wk.int2phys_der< eq_minus_second >(E_der[s].begin()+indw1,(double *)fe_x,(double *)fe_p,fe_w,fe_pw,1./one_h);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 44%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/BODY/body_rounded_polyhedron.cpp.o
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[ 61%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KIM/pair_kim.cpp.o
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In file included from /usr/include/c++/14/map:62,
from /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:61:
/usr/include/c++/14/bits/stl_tree.h: In function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Val = std::pair<const LAMMPS_NS::kim_units::units, double>; _KeyOfValue = std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >; _Compare = std::less<LAMMPS_NS::kim_units::units>; _Alloc = std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> >]':
/usr/include/c++/14/bits/stl_tree.h:2206:5: note: parameter passing for argument of type 'std::_Rb_tree<LAMMPS_NS::kim_units::units, std::pair<const LAMMPS_NS::kim_units::units, double>, std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >, std::less<LAMMPS_NS::kim_units::units>, std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> > >::const_iterator' changed in GCC 7.1
2206 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 61%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION -I/build/reproducible-path/lammps-20240207+dfsg/src/DIPOLE -I/build/reproducible-path/lammps-20240207+dfsg/src/DPD-BASIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DRUDE -I/build/reproducible-path/lammps-20240207+dfsg/src/EFF -I/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE -I/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR -I/build/reproducible-path/lammps-20240207+dfsg/src/FEP -I/build/reproducible-path/lammps-20240207+dfsg/src/GRANULAR -I/build/reproducible-path/lammps-20240207+dfsg/src/H5MD -I/build/reproducible-path/lammps-20240207+dfsg/src/KIM -I/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE -I/build/reproducible-path/lammps-20240207+dfsg/src/LATBOLTZ -I/build/reproducible-path/lammps-20240207+dfsg/src/MANIFOLD -I/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY -I/build/reproducible-path/lammps-20240207+dfsg/src/MC -I/build/reproducible-path/lammps-20240207+dfsg/src/MEAM -I/build/reproducible-path/lammps-20240207+dfsg/src/MGPT -I/build/reproducible-path/lammps-20240207+dfsg/src/MISC -I/build/reproducible-path/lammps-20240207+dfsg/src/MOFFF -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLECULE -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLFILE -I/build/reproducible-path/lammps-20240207+dfsg/src/NETCDF -I/build/reproducible-path/lammps-20240207+dfsg/src/ORIENT -I/build/reproducible-path/lammps-20240207+dfsg/src/PERI -I/build/reproducible-path/lammps-20240207+dfsg/src/PHONON -I/build/reproducible-path/lammps-20240207+dfsg/src/POEMS -I/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON -I/build/reproducible-path/lammps-20240207+dfsg/src/QEQ -I/build/reproducible-path/lammps-20240207+dfsg/src/QTB -I/build/reproducible-path/lammps-20240207+dfsg/src/REPLICA -I/build/reproducible-path/lammps-20240207+dfsg/src/RIGID -I/build/reproducible-path/lammps-20240207+dfsg/src/SHOCK -I/build/reproducible-path/lammps-20240207+dfsg/src/SMTBQ -I/build/reproducible-path/lammps-20240207+dfsg/src/SPH -I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/python3.12 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.3 -isystem /usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald.cpp
/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const LAMMPS_NS::kim_units::units&>, std::tuple<>}; _Key = LAMMPS_NS::kim_units::units; _Val = std::pair<const LAMMPS_NS::kim_units::units, double>; _KeyOfValue = std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >; _Compare = std::less<LAMMPS_NS::kim_units::units>; _Alloc = std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> >]':
/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<LAMMPS_NS::kim_units::units, std::pair<const LAMMPS_NS::kim_units::units, double>, std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >, std::less<LAMMPS_NS::kim_units::units>, std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> > >::const_iterator' changed in GCC 7.1
2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<LAMMPS_NS::kim_units::units&&>, std::tuple<>}; _Key = LAMMPS_NS::kim_units::units; _Val = std::pair<const LAMMPS_NS::kim_units::units, double>; _KeyOfValue = std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >; _Compare = std::less<LAMMPS_NS::kim_units::units>; _Alloc = std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> >]':
/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<LAMMPS_NS::kim_units::units, std::pair<const LAMMPS_NS::kim_units::units, double>, std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >, std::less<LAMMPS_NS::kim_units::units>, std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> > >::const_iterator' changed in GCC 7.1
[ 61%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_dipole.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION -I/build/reproducible-path/lammps-20240207+dfsg/src/DIPOLE -I/build/reproducible-path/lammps-20240207+dfsg/src/DPD-BASIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DRUDE -I/build/reproducible-path/lammps-20240207+dfsg/src/EFF -I/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE -I/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR -I/build/reproducible-path/lammps-20240207+dfsg/src/FEP -I/build/reproducible-path/lammps-20240207+dfsg/src/GRANULAR -I/build/reproducible-path/lammps-20240207+dfsg/src/H5MD -I/build/reproducible-path/lammps-20240207+dfsg/src/KIM -I/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE -I/build/reproducible-path/lammps-20240207+dfsg/src/LATBOLTZ -I/build/reproducible-path/lammps-20240207+dfsg/src/MANIFOLD -I/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY -I/build/reproducible-path/lammps-20240207+dfsg/src/MC -I/build/reproducible-path/lammps-20240207+dfsg/src/MEAM -I/build/reproducible-path/lammps-20240207+dfsg/src/MGPT -I/build/reproducible-path/lammps-20240207+dfsg/src/MISC -I/build/reproducible-path/lammps-20240207+dfsg/src/MOFFF -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLECULE -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLFILE -I/build/reproducible-path/lammps-20240207+dfsg/src/NETCDF -I/build/reproducible-path/lammps-20240207+dfsg/src/ORIENT -I/build/reproducible-path/lammps-20240207+dfsg/src/PERI -I/build/reproducible-path/lammps-20240207+dfsg/src/PHONON -I/build/reproducible-path/lammps-20240207+dfsg/src/POEMS -I/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON -I/build/reproducible-path/lammps-20240207+dfsg/src/QEQ -I/build/reproducible-path/lammps-20240207+dfsg/src/QTB -I/build/reproducible-path/lammps-20240207+dfsg/src/REPLICA -I/build/reproducible-path/lammps-20240207+dfsg/src/RIGID -I/build/reproducible-path/lammps-20240207+dfsg/src/SHOCK -I/build/reproducible-path/lammps-20240207+dfsg/src/SMTBQ -I/build/reproducible-path/lammps-20240207+dfsg/src/SPH -I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/python3.12 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.3 -isystem /usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_dipole.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_dipole.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_dipole.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_dipole.cpp
In file included from /usr/include/c++/14/map:63:
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less<LAMMPS_NS::kim_units::units>; _Alloc = std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> >]',
inlined from 'double LAMMPS_NS::kim_units::get_temperature_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1048:22:
/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<LAMMPS_NS::kim_units::units, std::pair<const LAMMPS_NS::kim_units::units, double>, std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >, std::less<LAMMPS_NS::kim_units::units>, std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> > >::const_iterator' changed in GCC 7.1
532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
533 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
534 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less<LAMMPS_NS::kim_units::units>; _Alloc = std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> >]',
inlined from 'double LAMMPS_NS::kim_units::get_temperature_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1049:43:
/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<LAMMPS_NS::kim_units::units, std::pair<const LAMMPS_NS::kim_units::units, double>, std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >, std::less<LAMMPS_NS::kim_units::units>, std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less<LAMMPS_NS::kim_units::units>; _Alloc = std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> >]':
/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<LAMMPS_NS::kim_units::units, std::pair<const LAMMPS_NS::kim_units::units, double>, std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >, std::less<LAMMPS_NS::kim_units::units>, std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> > >::const_iterator' changed in GCC 7.1
532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
533 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
534 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less<LAMMPS_NS::kim_units::units>; _Alloc = std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> >]',
inlined from 'double LAMMPS_NS::kim_units::get_mass_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:642:43:
/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<LAMMPS_NS::kim_units::units, std::pair<const LAMMPS_NS::kim_units::units, double>, std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >, std::less<LAMMPS_NS::kim_units::units>, std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less<LAMMPS_NS::kim_units::units>; _Alloc = std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> >]',
inlined from 'double LAMMPS_NS::kim_units::get_distance_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:700:43:
/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<LAMMPS_NS::kim_units::units, std::pair<const LAMMPS_NS::kim_units::units, double>, std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >, std::less<LAMMPS_NS::kim_units::units>, std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less<LAMMPS_NS::kim_units::units>; _Alloc = std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> >]',
inlined from 'double LAMMPS_NS::kim_units::get_time_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:745:43:
/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<LAMMPS_NS::kim_units::units, std::pair<const LAMMPS_NS::kim_units::units, double>, std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >, std::less<LAMMPS_NS::kim_units::units>, std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less<LAMMPS_NS::kim_units::units>; _Alloc = std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> >]',
inlined from 'double LAMMPS_NS::kim_units::get_energy_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:819:43:
/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<LAMMPS_NS::kim_units::units, std::pair<const LAMMPS_NS::kim_units::units, double>, std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >, std::less<LAMMPS_NS::kim_units::units>, std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less<LAMMPS_NS::kim_units::units>; _Alloc = std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> >]',
inlined from 'double LAMMPS_NS::kim_units::get_velocity_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:892:43:
/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<LAMMPS_NS::kim_units::units, std::pair<const LAMMPS_NS::kim_units::units, double>, std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >, std::less<LAMMPS_NS::kim_units::units>, std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less<LAMMPS_NS::kim_units::units>; _Alloc = std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> >]',
inlined from 'double LAMMPS_NS::kim_units::get_force_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:965:43:
/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<LAMMPS_NS::kim_units::units, std::pair<const LAMMPS_NS::kim_units::units, double>, std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >, std::less<LAMMPS_NS::kim_units::units>, std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less<LAMMPS_NS::kim_units::units>; _Alloc = std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> >]',
inlined from 'double LAMMPS_NS::kim_units::get_torque_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1038:43:
/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<LAMMPS_NS::kim_units::units, std::pair<const LAMMPS_NS::kim_units::units, double>, std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >, std::less<LAMMPS_NS::kim_units::units>, std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
[ 61%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_dipole_spin.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION -I/build/reproducible-path/lammps-20240207+dfsg/src/DIPOLE -I/build/reproducible-path/lammps-20240207+dfsg/src/DPD-BASIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DRUDE -I/build/reproducible-path/lammps-20240207+dfsg/src/EFF -I/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE -I/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR -I/build/reproducible-path/lammps-20240207+dfsg/src/FEP -I/build/reproducible-path/lammps-20240207+dfsg/src/GRANULAR -I/build/reproducible-path/lammps-20240207+dfsg/src/H5MD -I/build/reproducible-path/lammps-20240207+dfsg/src/KIM -I/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE -I/build/reproducible-path/lammps-20240207+dfsg/src/LATBOLTZ -I/build/reproducible-path/lammps-20240207+dfsg/src/MANIFOLD -I/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY -I/build/reproducible-path/lammps-20240207+dfsg/src/MC -I/build/reproducible-path/lammps-20240207+dfsg/src/MEAM -I/build/reproducible-path/lammps-20240207+dfsg/src/MGPT -I/build/reproducible-path/lammps-20240207+dfsg/src/MISC -I/build/reproducible-path/lammps-20240207+dfsg/src/MOFFF -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLECULE -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLFILE -I/build/reproducible-path/lammps-20240207+dfsg/src/NETCDF -I/build/reproducible-path/lammps-20240207+dfsg/src/ORIENT -I/build/reproducible-path/lammps-20240207+dfsg/src/PERI -I/build/reproducible-path/lammps-20240207+dfsg/src/PHONON -I/build/reproducible-path/lammps-20240207+dfsg/src/POEMS -I/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON -I/build/reproducible-path/lammps-20240207+dfsg/src/QEQ -I/build/reproducible-path/lammps-20240207+dfsg/src/QTB -I/build/reproducible-path/lammps-20240207+dfsg/src/REPLICA -I/build/reproducible-path/lammps-20240207+dfsg/src/RIGID -I/build/reproducible-path/lammps-20240207+dfsg/src/SHOCK -I/build/reproducible-path/lammps-20240207+dfsg/src/SMTBQ -I/build/reproducible-path/lammps-20240207+dfsg/src/SPH -I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/python3.12 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.3 -isystem /usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_dipole_spin.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_dipole_spin.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_dipole_spin.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_dipole_spin.cpp
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less<LAMMPS_NS::kim_units::units>; _Alloc = std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> >]',
inlined from 'double LAMMPS_NS::kim_units::get_pressure_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1107:43:
/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<LAMMPS_NS::kim_units::units, std::pair<const LAMMPS_NS::kim_units::units, double>, std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >, std::less<LAMMPS_NS::kim_units::units>, std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less<LAMMPS_NS::kim_units::units>; _Alloc = std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> >]',
inlined from 'double LAMMPS_NS::kim_units::get_viscosity_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1152:43:
/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<LAMMPS_NS::kim_units::units, std::pair<const LAMMPS_NS::kim_units::units, double>, std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >, std::less<LAMMPS_NS::kim_units::units>, std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
[ 61%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_disp.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION -I/build/reproducible-path/lammps-20240207+dfsg/src/DIPOLE -I/build/reproducible-path/lammps-20240207+dfsg/src/DPD-BASIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DRUDE -I/build/reproducible-path/lammps-20240207+dfsg/src/EFF -I/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE -I/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR -I/build/reproducible-path/lammps-20240207+dfsg/src/FEP -I/build/reproducible-path/lammps-20240207+dfsg/src/GRANULAR -I/build/reproducible-path/lammps-20240207+dfsg/src/H5MD -I/build/reproducible-path/lammps-20240207+dfsg/src/KIM -I/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE -I/build/reproducible-path/lammps-20240207+dfsg/src/LATBOLTZ -I/build/reproducible-path/lammps-20240207+dfsg/src/MANIFOLD -I/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY -I/build/reproducible-path/lammps-20240207+dfsg/src/MC -I/build/reproducible-path/lammps-20240207+dfsg/src/MEAM -I/build/reproducible-path/lammps-20240207+dfsg/src/MGPT -I/build/reproducible-path/lammps-20240207+dfsg/src/MISC -I/build/reproducible-path/lammps-20240207+dfsg/src/MOFFF -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLECULE -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLFILE -I/build/reproducible-path/lammps-20240207+dfsg/src/NETCDF -I/build/reproducible-path/lammps-20240207+dfsg/src/ORIENT -I/build/reproducible-path/lammps-20240207+dfsg/src/PERI -I/build/reproducible-path/lammps-20240207+dfsg/src/PHONON -I/build/reproducible-path/lammps-20240207+dfsg/src/POEMS -I/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON -I/build/reproducible-path/lammps-20240207+dfsg/src/QEQ -I/build/reproducible-path/lammps-20240207+dfsg/src/QTB -I/build/reproducible-path/lammps-20240207+dfsg/src/REPLICA -I/build/reproducible-path/lammps-20240207+dfsg/src/RIGID -I/build/reproducible-path/lammps-20240207+dfsg/src/SHOCK -I/build/reproducible-path/lammps-20240207+dfsg/src/SMTBQ -I/build/reproducible-path/lammps-20240207+dfsg/src/SPH -I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/python3.12 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.3 -isystem /usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_disp.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_disp.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_disp.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_disp.cpp
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less<LAMMPS_NS::kim_units::units>; _Alloc = std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> >]',
inlined from 'double LAMMPS_NS::kim_units::get_charge_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1163:24:
/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<LAMMPS_NS::kim_units::units, std::pair<const LAMMPS_NS::kim_units::units, double>, std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >, std::less<LAMMPS_NS::kim_units::units>, std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> > >::const_iterator' changed in GCC 7.1
532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
533 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
534 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less<LAMMPS_NS::kim_units::units>; _Alloc = std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> >]',
inlined from 'double LAMMPS_NS::kim_units::get_charge_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1164:24:
/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<LAMMPS_NS::kim_units::units, std::pair<const LAMMPS_NS::kim_units::units, double>, std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >, std::less<LAMMPS_NS::kim_units::units>, std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> > >::const_iterator' changed in GCC 7.1
532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
533 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
534 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less<LAMMPS_NS::kim_units::units>; _Alloc = std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> >]',
inlined from 'double LAMMPS_NS::kim_units::get_charge_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1165:28:
/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<LAMMPS_NS::kim_units::units, std::pair<const LAMMPS_NS::kim_units::units, double>, std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >, std::less<LAMMPS_NS::kim_units::units>, std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> > >::const_iterator' changed in GCC 7.1
532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
533 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
534 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less<LAMMPS_NS::kim_units::units>; _Alloc = std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> >]',
inlined from 'double LAMMPS_NS::kim_units::get_charge_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1166:28:
/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<LAMMPS_NS::kim_units::units, std::pair<const LAMMPS_NS::kim_units::units, double>, std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >, std::less<LAMMPS_NS::kim_units::units>, std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> > >::const_iterator' changed in GCC 7.1
532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
533 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
534 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less<LAMMPS_NS::kim_units::units>; _Alloc = std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> >]',
inlined from 'double LAMMPS_NS::kim_units::get_charge_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1168:36:
/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<LAMMPS_NS::kim_units::units, std::pair<const LAMMPS_NS::kim_units::units, double>, std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >, std::less<LAMMPS_NS::kim_units::units>, std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> > >::const_iterator' changed in GCC 7.1
532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
533 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
534 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less<LAMMPS_NS::kim_units::units>; _Alloc = std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> >]',
inlined from 'double LAMMPS_NS::kim_units::get_charge_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1169:63:
/usr/include/c++/14/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree<LAMMPS_NS::kim_units::units, std::pair<const LAMMPS_NS::kim_units::units, double>, std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >, std::less<LAMMPS_NS::kim_units::units>, std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> > >::const_iterator' changed in GCC 7.1
532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
533 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
534 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less<LAMMPS_NS::kim_units::units>; _Alloc = std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> >]',
inlined from 'double LAMMPS_NS::kim_units::get_charge_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1186:43:
/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<LAMMPS_NS::kim_units::units, std::pair<const LAMMPS_NS::kim_units::units, double>, std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >, std::less<LAMMPS_NS::kim_units::units>, std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
[ 61%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fft3d.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION -I/build/reproducible-path/lammps-20240207+dfsg/src/DIPOLE -I/build/reproducible-path/lammps-20240207+dfsg/src/DPD-BASIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DRUDE -I/build/reproducible-path/lammps-20240207+dfsg/src/EFF -I/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE -I/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR -I/build/reproducible-path/lammps-20240207+dfsg/src/FEP -I/build/reproducible-path/lammps-20240207+dfsg/src/GRANULAR -I/build/reproducible-path/lammps-20240207+dfsg/src/H5MD -I/build/reproducible-path/lammps-20240207+dfsg/src/KIM -I/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE -I/build/reproducible-path/lammps-20240207+dfsg/src/LATBOLTZ -I/build/reproducible-path/lammps-20240207+dfsg/src/MANIFOLD -I/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY -I/build/reproducible-path/lammps-20240207+dfsg/src/MC -I/build/reproducible-path/lammps-20240207+dfsg/src/MEAM -I/build/reproducible-path/lammps-20240207+dfsg/src/MGPT -I/build/reproducible-path/lammps-20240207+dfsg/src/MISC -I/build/reproducible-path/lammps-20240207+dfsg/src/MOFFF -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLECULE -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLFILE -I/build/reproducible-path/lammps-20240207+dfsg/src/NETCDF -I/build/reproducible-path/lammps-20240207+dfsg/src/ORIENT -I/build/reproducible-path/lammps-20240207+dfsg/src/PERI -I/build/reproducible-path/lammps-20240207+dfsg/src/PHONON -I/build/reproducible-path/lammps-20240207+dfsg/src/POEMS -I/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON -I/build/reproducible-path/lammps-20240207+dfsg/src/QEQ -I/build/reproducible-path/lammps-20240207+dfsg/src/QTB -I/build/reproducible-path/lammps-20240207+dfsg/src/REPLICA -I/build/reproducible-path/lammps-20240207+dfsg/src/RIGID -I/build/reproducible-path/lammps-20240207+dfsg/src/SHOCK -I/build/reproducible-path/lammps-20240207+dfsg/src/SMTBQ -I/build/reproducible-path/lammps-20240207+dfsg/src/SPH -I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/python3.12 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.3 -isystem /usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fft3d.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fft3d.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fft3d.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fft3d.cpp
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less<LAMMPS_NS::kim_units::units>; _Alloc = std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> >]',
inlined from 'double LAMMPS_NS::kim_units::get_dipole_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1244:43:
/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<LAMMPS_NS::kim_units::units, std::pair<const LAMMPS_NS::kim_units::units, double>, std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >, std::less<LAMMPS_NS::kim_units::units>, std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
[ 61%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fft3d_wrap.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION -I/build/reproducible-path/lammps-20240207+dfsg/src/DIPOLE -I/build/reproducible-path/lammps-20240207+dfsg/src/DPD-BASIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DRUDE -I/build/reproducible-path/lammps-20240207+dfsg/src/EFF -I/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE -I/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR -I/build/reproducible-path/lammps-20240207+dfsg/src/FEP -I/build/reproducible-path/lammps-20240207+dfsg/src/GRANULAR -I/build/reproducible-path/lammps-20240207+dfsg/src/H5MD -I/build/reproducible-path/lammps-20240207+dfsg/src/KIM -I/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE -I/build/reproducible-path/lammps-20240207+dfsg/src/LATBOLTZ -I/build/reproducible-path/lammps-20240207+dfsg/src/MANIFOLD -I/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY -I/build/reproducible-path/lammps-20240207+dfsg/src/MC -I/build/reproducible-path/lammps-20240207+dfsg/src/MEAM -I/build/reproducible-path/lammps-20240207+dfsg/src/MGPT -I/build/reproducible-path/lammps-20240207+dfsg/src/MISC -I/build/reproducible-path/lammps-20240207+dfsg/src/MOFFF -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLECULE -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLFILE -I/build/reproducible-path/lammps-20240207+dfsg/src/NETCDF -I/build/reproducible-path/lammps-20240207+dfsg/src/ORIENT -I/build/reproducible-path/lammps-20240207+dfsg/src/PERI -I/build/reproducible-path/lammps-20240207+dfsg/src/PHONON -I/build/reproducible-path/lammps-20240207+dfsg/src/POEMS -I/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON -I/build/reproducible-path/lammps-20240207+dfsg/src/QEQ -I/build/reproducible-path/lammps-20240207+dfsg/src/QTB -I/build/reproducible-path/lammps-20240207+dfsg/src/REPLICA -I/build/reproducible-path/lammps-20240207+dfsg/src/RIGID -I/build/reproducible-path/lammps-20240207+dfsg/src/SHOCK -I/build/reproducible-path/lammps-20240207+dfsg/src/SMTBQ -I/build/reproducible-path/lammps-20240207+dfsg/src/SPH -I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/python3.12 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.3 -isystem /usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fft3d_wrap.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fft3d_wrap.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fft3d_wrap.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fft3d_wrap.cpp
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less<LAMMPS_NS::kim_units::units>; _Alloc = std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> >]',
inlined from 'double LAMMPS_NS::kim_units::get_efield_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1302:43:
/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<LAMMPS_NS::kim_units::units, std::pair<const LAMMPS_NS::kim_units::units, double>, std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >, std::less<LAMMPS_NS::kim_units::units>, std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less<LAMMPS_NS::kim_units::units>; _Alloc = std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> >]',
inlined from 'double LAMMPS_NS::kim_units::get_density_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1347:43:
/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<LAMMPS_NS::kim_units::units, std::pair<const LAMMPS_NS::kim_units::units, double>, std::_Select1st<std::pair<const LAMMPS_NS::kim_units::units, double> >, std::less<LAMMPS_NS::kim_units::units>, std::allocator<std::pair<const LAMMPS_NS::kim_units::units, double> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
[ 61%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fix_tune_kspace.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION -I/build/reproducible-path/lammps-20240207+dfsg/src/DIPOLE -I/build/reproducible-path/lammps-20240207+dfsg/src/DPD-BASIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DRUDE -I/build/reproducible-path/lammps-20240207+dfsg/src/EFF -I/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE -I/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR -I/build/reproducible-path/lammps-20240207+dfsg/src/FEP -I/build/reproducible-path/lammps-20240207+dfsg/src/GRANULAR -I/build/reproducible-path/lammps-20240207+dfsg/src/H5MD -I/build/reproducible-path/lammps-20240207+dfsg/src/KIM -I/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE -I/build/reproducible-path/lammps-20240207+dfsg/src/LATBOLTZ -I/build/reproducible-path/lammps-20240207+dfsg/src/MANIFOLD -I/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY -I/build/reproducible-path/lammps-20240207+dfsg/src/MC -I/build/reproducible-path/lammps-20240207+dfsg/src/MEAM -I/build/reproducible-path/lammps-20240207+dfsg/src/MGPT -I/build/reproducible-path/lammps-20240207+dfsg/src/MISC -I/build/reproducible-path/lammps-20240207+dfsg/src/MOFFF -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLECULE -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLFILE -I/build/reproducible-path/lammps-20240207+dfsg/src/NETCDF -I/build/reproducible-path/lammps-20240207+dfsg/src/ORIENT -I/build/reproducible-path/lammps-20240207+dfsg/src/PERI -I/build/reproducible-path/lammps-20240207+dfsg/src/PHONON -I/build/reproducible-path/lammps-20240207+dfsg/src/POEMS -I/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON -I/build/reproducible-path/lammps-20240207+dfsg/src/QEQ -I/build/reproducible-path/lammps-20240207+dfsg/src/QTB -I/build/reproducible-path/lammps-20240207+dfsg/src/REPLICA -I/build/reproducible-path/lammps-20240207+dfsg/src/RIGID -I/build/reproducible-path/lammps-20240207+dfsg/src/SHOCK -I/build/reproducible-path/lammps-20240207+dfsg/src/SMTBQ -I/build/reproducible-path/lammps-20240207+dfsg/src/SPH -I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/python3.12 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.3 -isystem /usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fix_tune_kspace.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fix_tune_kspace.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fix_tune_kspace.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fix_tune_kspace.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/msm.cpp.o
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[ 66%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_gw_zbl.cpp.o
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In file included from /usr/include/c++/14/map:62,
from /build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_eim.h:25,
from /build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_eim.cpp:19:
/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, LAMMPS_NS::EIMPotentialFileReader::ElementData>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, LAMMPS_NS::EIMPotentialFileReader::ElementData> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, LAMMPS_NS::EIMPotentialFileReader::ElementData> >]':
/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, LAMMPS_NS::EIMPotentialFileReader::ElementData>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, LAMMPS_NS::EIMPotentialFileReader::ElementData> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, LAMMPS_NS::EIMPotentialFileReader::ElementData> > >::const_iterator' changed in GCC 7.1
2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/map:63:
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = LAMMPS_NS::EIMPotentialFileReader::ElementData; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, LAMMPS_NS::EIMPotentialFileReader::ElementData> >]',
inlined from 'void LAMMPS_NS::EIMPotentialFileReader::get_element(LAMMPS_NS::PairEIM::Setfl*, int, const std::string&)' at /build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_eim.cpp:1184:36:
/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, LAMMPS_NS::EIMPotentialFileReader::ElementData>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, LAMMPS_NS::EIMPotentialFileReader::ElementData> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, LAMMPS_NS::EIMPotentialFileReader::ElementData> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >&>, std::tuple<>}; _Key = std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >; _Val = std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, LAMMPS_NS::EIMPotentialFileReader::PairData>; _KeyOfValue = std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, LAMMPS_NS::EIMPotentialFileReader::PairData> >; _Compare = std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, LAMMPS_NS::EIMPotentialFileReader::PairData> >]':
/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, LAMMPS_NS::EIMPotentialFileReader::PairData>, std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, LAMMPS_NS::EIMPotentialFileReader::PairData> >, std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, LAMMPS_NS::EIMPotentialFileReader::PairData> > >::const_iterator' changed in GCC 7.1
2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >; _Tp = LAMMPS_NS::EIMPotentialFileReader::PairData; _Compare = std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, LAMMPS_NS::EIMPotentialFileReader::PairData> >]',
inlined from 'void LAMMPS_NS::EIMPotentialFileReader::get_pair(LAMMPS_NS::PairEIM::Setfl*, int, const std::string&, const std::string&)' at /build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_eim.cpp:1203:27:
/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, LAMMPS_NS::EIMPotentialFileReader::PairData>, std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, LAMMPS_NS::EIMPotentialFileReader::PairData> >, std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, LAMMPS_NS::EIMPotentialFileReader::PairData> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
[ 67%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_lcbop.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION -I/build/reproducible-path/lammps-20240207+dfsg/src/DIPOLE -I/build/reproducible-path/lammps-20240207+dfsg/src/DPD-BASIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DRUDE -I/build/reproducible-path/lammps-20240207+dfsg/src/EFF -I/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE -I/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR -I/build/reproducible-path/lammps-20240207+dfsg/src/FEP -I/build/reproducible-path/lammps-20240207+dfsg/src/GRANULAR -I/build/reproducible-path/lammps-20240207+dfsg/src/H5MD -I/build/reproducible-path/lammps-20240207+dfsg/src/KIM -I/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE -I/build/reproducible-path/lammps-20240207+dfsg/src/LATBOLTZ -I/build/reproducible-path/lammps-20240207+dfsg/src/MANIFOLD -I/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY -I/build/reproducible-path/lammps-20240207+dfsg/src/MC -I/build/reproducible-path/lammps-20240207+dfsg/src/MEAM -I/build/reproducible-path/lammps-20240207+dfsg/src/MGPT -I/build/reproducible-path/lammps-20240207+dfsg/src/MISC -I/build/reproducible-path/lammps-20240207+dfsg/src/MOFFF -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLECULE -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLFILE -I/build/reproducible-path/lammps-20240207+dfsg/src/NETCDF -I/build/reproducible-path/lammps-20240207+dfsg/src/ORIENT -I/build/reproducible-path/lammps-20240207+dfsg/src/PERI -I/build/reproducible-path/lammps-20240207+dfsg/src/PHONON -I/build/reproducible-path/lammps-20240207+dfsg/src/POEMS -I/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON -I/build/reproducible-path/lammps-20240207+dfsg/src/QEQ -I/build/reproducible-path/lammps-20240207+dfsg/src/QTB -I/build/reproducible-path/lammps-20240207+dfsg/src/REPLICA -I/build/reproducible-path/lammps-20240207+dfsg/src/RIGID -I/build/reproducible-path/lammps-20240207+dfsg/src/SHOCK -I/build/reproducible-path/lammps-20240207+dfsg/src/SMTBQ -I/build/reproducible-path/lammps-20240207+dfsg/src/SPH -I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/python3.12 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.3 -isystem /usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_lcbop.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_lcbop.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_lcbop.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_lcbop.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_local_density.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION -I/build/reproducible-path/lammps-20240207+dfsg/src/DIPOLE -I/build/reproducible-path/lammps-20240207+dfsg/src/DPD-BASIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DRUDE -I/build/reproducible-path/lammps-20240207+dfsg/src/EFF -I/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE -I/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR -I/build/reproducible-path/lammps-20240207+dfsg/src/FEP -I/build/reproducible-path/lammps-20240207+dfsg/src/GRANULAR -I/build/reproducible-path/lammps-20240207+dfsg/src/H5MD -I/build/reproducible-path/lammps-20240207+dfsg/src/KIM -I/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE -I/build/reproducible-path/lammps-20240207+dfsg/src/LATBOLTZ -I/build/reproducible-path/lammps-20240207+dfsg/src/MANIFOLD -I/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY -I/build/reproducible-path/lammps-20240207+dfsg/src/MC -I/build/reproducible-path/lammps-20240207+dfsg/src/MEAM -I/build/reproducible-path/lammps-20240207+dfsg/src/MGPT -I/build/reproducible-path/lammps-20240207+dfsg/src/MISC -I/build/reproducible-path/lammps-20240207+dfsg/src/MOFFF -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLECULE -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLFILE -I/build/reproducible-path/lammps-20240207+dfsg/src/NETCDF -I/build/reproducible-path/lammps-20240207+dfsg/src/ORIENT -I/build/reproducible-path/lammps-20240207+dfsg/src/PERI -I/build/reproducible-path/lammps-20240207+dfsg/src/PHONON -I/build/reproducible-path/lammps-20240207+dfsg/src/POEMS -I/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON -I/build/reproducible-path/lammps-20240207+dfsg/src/QEQ -I/build/reproducible-path/lammps-20240207+dfsg/src/QTB -I/build/reproducible-path/lammps-20240207+dfsg/src/REPLICA -I/build/reproducible-path/lammps-20240207+dfsg/src/RIGID -I/build/reproducible-path/lammps-20240207+dfsg/src/SHOCK -I/build/reproducible-path/lammps-20240207+dfsg/src/SMTBQ -I/build/reproducible-path/lammps-20240207+dfsg/src/SPH -I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/python3.12 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.3 -isystem /usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_local_density.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_local_density.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_local_density.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_local_density.cpp
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = LAMMPS_NS::EIMPotentialFileReader::ElementData; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, LAMMPS_NS::EIMPotentialFileReader::ElementData> >]',
inlined from 'void LAMMPS_NS::EIMPotentialFileReader::parse(FILE*)' at /build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_eim.cpp:1126:22:
/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, LAMMPS_NS::EIMPotentialFileReader::ElementData>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, LAMMPS_NS::EIMPotentialFileReader::ElementData> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, LAMMPS_NS::EIMPotentialFileReader::ElementData> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >; _Tp = LAMMPS_NS::EIMPotentialFileReader::PairData; _Compare = std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, LAMMPS_NS::EIMPotentialFileReader::PairData> >]',
inlined from 'void LAMMPS_NS::EIMPotentialFileReader::parse(FILE*)' at /build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_eim.cpp:1161:16:
/usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, LAMMPS_NS::EIMPotentialFileReader::PairData>, std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, LAMMPS_NS::EIMPotentialFileReader::PairData> >, std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, LAMMPS_NS::EIMPotentialFileReader::PairData> > >::const_iterator' changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
[ 67%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_meam_spline.cpp.o
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[ 68%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MC/fix_atom_swap.cpp.o
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/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION -I/build/reproducible-path/lammps-20240207+dfsg/src/DIPOLE -I/build/reproducible-path/lammps-20240207+dfsg/src/DPD-BASIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DRUDE -I/build/reproducible-path/lammps-20240207+dfsg/src/EFF -I/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE -I/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR -I/build/reproducible-path/lammps-20240207+dfsg/src/FEP -I/build/reproducible-path/lammps-20240207+dfsg/src/GRANULAR -I/build/reproducible-path/lammps-20240207+dfsg/src/H5MD -I/build/reproducible-path/lammps-20240207+dfsg/src/KIM -I/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE -I/build/reproducible-path/lammps-20240207+dfsg/src/LATBOLTZ -I/build/reproducible-path/lammps-20240207+dfsg/src/MANIFOLD -I/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY -I/build/reproducible-path/lammps-20240207+dfsg/src/MC -I/build/reproducible-path/lammps-20240207+dfsg/src/MEAM -I/build/reproducible-path/lammps-20240207+dfsg/src/MGPT -I/build/reproducible-path/lammps-20240207+dfsg/src/MISC -I/build/reproducible-path/lammps-20240207+dfsg/src/MOFFF -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLECULE -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLFILE -I/build/reproducible-path/lammps-20240207+dfsg/src/NETCDF -I/build/reproducible-path/lammps-20240207+dfsg/src/ORIENT -I/build/reproducible-path/lammps-20240207+dfsg/src/PERI -I/build/reproducible-path/lammps-20240207+dfsg/src/PHONON -I/build/reproducible-path/lammps-20240207+dfsg/src/POEMS -I/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON -I/build/reproducible-path/lammps-20240207+dfsg/src/QEQ -I/build/reproducible-path/lammps-20240207+dfsg/src/QTB -I/build/reproducible-path/lammps-20240207+dfsg/src/REPLICA -I/build/reproducible-path/lammps-20240207+dfsg/src/RIGID -I/build/reproducible-path/lammps-20240207+dfsg/src/SHOCK -I/build/reproducible-path/lammps-20240207+dfsg/src/SMTBQ -I/build/reproducible-path/lammps-20240207+dfsg/src/SPH -I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/python3.12 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.3 -isystem /usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_linalg.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_linalg.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_linalg.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_linalg.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp.o
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/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp: In member function 'void potdata::readpot(const char*, const char*, double)':
/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:188:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
188 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:204:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
204 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:247:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
247 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:307:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
307 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:330:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
330 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:332:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
332 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:335:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
335 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:344:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
344 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:346:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
346 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:359:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
359 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp: In function 'void getparmindata(const char*, int*, double*, double*, double*)':
/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:110:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
110 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:120:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
120 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:124:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
124 | fgets(line,sizeof(line),in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
[ 70%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_splinetab.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION -I/build/reproducible-path/lammps-20240207+dfsg/src/DIPOLE -I/build/reproducible-path/lammps-20240207+dfsg/src/DPD-BASIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DRUDE -I/build/reproducible-path/lammps-20240207+dfsg/src/EFF -I/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE -I/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR -I/build/reproducible-path/lammps-20240207+dfsg/src/FEP -I/build/reproducible-path/lammps-20240207+dfsg/src/GRANULAR -I/build/reproducible-path/lammps-20240207+dfsg/src/H5MD -I/build/reproducible-path/lammps-20240207+dfsg/src/KIM -I/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE -I/build/reproducible-path/lammps-20240207+dfsg/src/LATBOLTZ -I/build/reproducible-path/lammps-20240207+dfsg/src/MANIFOLD -I/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY -I/build/reproducible-path/lammps-20240207+dfsg/src/MC -I/build/reproducible-path/lammps-20240207+dfsg/src/MEAM -I/build/reproducible-path/lammps-20240207+dfsg/src/MGPT -I/build/reproducible-path/lammps-20240207+dfsg/src/MISC -I/build/reproducible-path/lammps-20240207+dfsg/src/MOFFF -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLECULE -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLFILE -I/build/reproducible-path/lammps-20240207+dfsg/src/NETCDF -I/build/reproducible-path/lammps-20240207+dfsg/src/ORIENT -I/build/reproducible-path/lammps-20240207+dfsg/src/PERI -I/build/reproducible-path/lammps-20240207+dfsg/src/PHONON -I/build/reproducible-path/lammps-20240207+dfsg/src/POEMS -I/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON -I/build/reproducible-path/lammps-20240207+dfsg/src/QEQ -I/build/reproducible-path/lammps-20240207+dfsg/src/QTB -I/build/reproducible-path/lammps-20240207+dfsg/src/REPLICA -I/build/reproducible-path/lammps-20240207+dfsg/src/RIGID -I/build/reproducible-path/lammps-20240207+dfsg/src/SHOCK -I/build/reproducible-path/lammps-20240207+dfsg/src/SMTBQ -I/build/reproducible-path/lammps-20240207+dfsg/src/SPH -I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/python3.12 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.3 -isystem /usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_splinetab.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_splinetab.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_splinetab.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_splinetab.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/pair_mgpt.cpp.o
/usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION -I/build/reproducible-path/lammps-20240207+dfsg/src/DIPOLE -I/build/reproducible-path/lammps-20240207+dfsg/src/DPD-BASIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DRUDE -I/build/reproducible-path/lammps-20240207+dfsg/src/EFF -I/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE -I/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR -I/build/reproducible-path/lammps-20240207+dfsg/src/FEP -I/build/reproducible-path/lammps-20240207+dfsg/src/GRANULAR -I/build/reproducible-path/lammps-20240207+dfsg/src/H5MD -I/build/reproducible-path/lammps-20240207+dfsg/src/KIM -I/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE -I/build/reproducible-path/lammps-20240207+dfsg/src/LATBOLTZ -I/build/reproducible-path/lammps-20240207+dfsg/src/MANIFOLD -I/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY -I/build/reproducible-path/lammps-20240207+dfsg/src/MC -I/build/reproducible-path/lammps-20240207+dfsg/src/MEAM -I/build/reproducible-path/lammps-20240207+dfsg/src/MGPT -I/build/reproducible-path/lammps-20240207+dfsg/src/MISC -I/build/reproducible-path/lammps-20240207+dfsg/src/MOFFF -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLECULE -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLFILE -I/build/reproducible-path/lammps-20240207+dfsg/src/NETCDF -I/build/reproducible-path/lammps-20240207+dfsg/src/ORIENT -I/build/reproducible-path/lammps-20240207+dfsg/src/PERI -I/build/reproducible-path/lammps-20240207+dfsg/src/PHONON -I/build/reproducible-path/lammps-20240207+dfsg/src/POEMS -I/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON -I/build/reproducible-path/lammps-20240207+dfsg/src/QEQ -I/build/reproducible-path/lammps-20240207+dfsg/src/QTB -I/build/reproducible-path/lammps-20240207+dfsg/src/REPLICA -I/build/reproducible-path/lammps-20240207+dfsg/src/RIGID -I/build/reproducible-path/lammps-20240207+dfsg/src/SHOCK -I/build/reproducible-path/lammps-20240207+dfsg/src/SMTBQ -I/build/reproducible-path/lammps-20240207+dfsg/src/SPH -I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/mpich/include -isystem /usr/include/python3.12 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.3 -isystem /usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/pair_mgpt.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/pair_mgpt.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/pair_mgpt.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/pair_mgpt.cpp
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Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/lammps.cpp...
Reading /build/reproducible-path/lammps-20240207+dfsg/src/lammps.h...
Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/lammps.h...
Reading /build/reproducible-path/lammps-20240207+dfsg/src/pointers.h...
Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/pointers.h...
Reading /build/reproducible-path/lammps-20240207+dfsg/src/lmptype.h...
Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/lmptype.h...
Reading /build/reproducible-path/lammps-20240207+dfsg/src/atom.cpp...
Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/atom.cpp...
Reading /build/reproducible-path/lammps-20240207+dfsg/src/atom.h...
Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/atom.h...
Reading /build/reproducible-path/lammps-20240207+dfsg/src/input.cpp...
Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/input.cpp...
Reading /build/reproducible-path/lammps-20240207+dfsg/src/input.h...
Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/input.h...
Reading /build/reproducible-path/lammps-20240207+dfsg/src/tokenizer.cpp...
Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/tokenizer.cpp...
Reading /build/reproducible-path/lammps-20240207+dfsg/src/tokenizer.h...
Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/tokenizer.h...
Reading /build/reproducible-path/lammps-20240207+dfsg/src/arg_info.cpp...
Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/arg_info.cpp...
Reading /build/reproducible-path/lammps-20240207+dfsg/src/arg_info.h...
Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/arg_info.h...
Reading /build/reproducible-path/lammps-20240207+dfsg/src/text_file_reader.cpp...
Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/text_file_reader.cpp...
Reading /build/reproducible-path/lammps-20240207+dfsg/src/text_file_reader.h...
Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/text_file_reader.h...
Reading /build/reproducible-path/lammps-20240207+dfsg/src/potential_file_reader.cpp...
Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/potential_file_reader.cpp...
Reading /build/reproducible-path/lammps-20240207+dfsg/src/potential_file_reader.h...
Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/potential_file_reader.h...
Reading /build/reproducible-path/lammps-20240207+dfsg/src/my_page.cpp...
Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/my_page.cpp...
Reading /build/reproducible-path/lammps-20240207+dfsg/src/my_page.h...
Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/my_page.h...
Reading /build/reproducible-path/lammps-20240207+dfsg/src/my_pool_chunk.cpp...
Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/my_pool_chunk.cpp...
Reading /build/reproducible-path/lammps-20240207+dfsg/src/my_pool_chunk.h...
Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/my_pool_chunk.h...
Reading /build/reproducible-path/lammps-20240207+dfsg/src/math_eigen.h...
Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/math_eigen.h...
Reading /build/reproducible-path/lammps-20240207+dfsg/src/platform.h...
Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/platform.h...
Reading /build/reproducible-path/lammps-20240207+dfsg/src/platform.cpp...
Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/platform.cpp...
Reading /build/reproducible-path/lammps-20240207+dfsg/src/math_special.h...
Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/math_special.h...
Reading /build/reproducible-path/lammps-20240207+dfsg/src/math_special.cpp...
Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/math_special.cpp...
Building macro definition list...
Building group list...
Building directory list...
Building namespace list...
Building file list...
Building class list...
Building concept list...
Computing nesting relations for classes...
Associating documentation with classes...
Associating documentation with concepts...
Associating documentation with modules...
Building example list...
Searching for enumerations...
Searching for documented typedefs...
Searching for members imported via using declarations...
Searching for included using directives...
Searching for documented variables...
Building interface member list...
Building member list...
Searching for friends...
Searching for documented defines...
Computing class inheritance relations...
Computing class usage relations...
Flushing cached template relations that have become invalid...
Computing class relations...
Add enum values to enums...
Searching for member function documentation...
Creating members for template instances...
Building page list...
Search for main page...
Computing page relations...
Determining the scope of groups...
Computing module relations...
Sorting lists...
Determining which enums are documented
Computing member relations...
Building full member lists recursively...
Adding members to member groups.
Computing member references...
Inheriting documentation...
Generating disk names...
Adding source references...
Adding xrefitems...
Sorting member lists...
Setting anonymous enum type...
Computing dependencies between directories...
Generating citations page...
Counting members...
Counting data structures...
Resolving user defined references...
Finding anchors and sections in the documentation...
Transferring function references...
Combining using relations...
Adding members to index pages...
Correcting members for VHDL...
Computing tooltip texts...
Generating style sheet...
Generating search indices...
Generating example documentation...
Generating file sources...
Generating code for file arg_info.h...
Generating code for file atom.h...
Generating code for file input.h...
Generating code for file lammps.h...
Generating code for file library.h...
Generating code for file lmptype.h...
Generating code for file math_eigen.h...
Generating code for file math_special.h...
Generating code for file my_page.h...
Generating code for file my_pool_chunk.h...
Generating code for file platform.h...
Generating code for file pointers.h...
Generating code for file potential_file_reader.h...
Generating code for file text_file_reader.h...
Generating code for file tokenizer.h...
Generating code for file utils.h...
Generating file documentation...
Generating page documentation...
Generating group documentation...
Generating class documentation...
Generating docs for compound compress_info...
Generating concept documentation...
Generating module documentation...
Generating namespace documentation...
Generating docs for compound LAMMPS_NS::Atom...
Generating docs for compound LAMMPS_NS::Input...
Generating docs for compound LAMMPS_NS::InvalidFloatException...
Generating docs for compound LAMMPS_NS::InvalidIntegerException...
Generating docs for compound LAMMPS_NS::LAMMPS...
Generating docs for compound LAMMPS_NS::multitype...
Generating docs for compound LAMMPS_NS::MyPage...
Generating docs for compound LAMMPS_NS::MyPoolChunk...
Generating docs for compound LAMMPS_NS::Pointers...
Generating docs for compound LAMMPS_NS::TokenizerException...
Generating docs for compound LAMMPS_NS::ubuf...
Generating graph info page...
Generating directory documentation...
finalizing index lists...
writing tag file...
Generating XML output...
Generating XML output for class LAMMPS_NS::ArgInfo
Generating XML output for class LAMMPS_NS::Atom
Generating XML output for class compress_info
Generating XML output for class LAMMPS_NS::EOFException
Generating XML output for class LAMMPS_NS::FileReaderException
Generating XML output for class LAMMPS_NS::Atom::HashElem
Generating XML output for class LAMMPS_NS::HyperOneCoeff
Generating XML output for class LAMMPS_NS::Input
Generating XML output for class LAMMPS_NS::InvalidFloatException
Generating XML output for class LAMMPS_NS::InvalidIntegerException
Generating XML output for class LAMMPS_NS::LAMMPS
Generating XML output for class LAMMPS_NS::multitype
Generating XML output for class LAMMPS_NS::MyPage
Generating XML output for class LAMMPS_NS::MyPoolChunk
Generating XML output for class LAMMPS_NS::package_styles_lists
Generating XML output for class LAMMPS_NS::Atom::PerAtom
Generating XML output for class LAMMPS_NS::Pointers
Generating XML output for class LAMMPS_NS::PotentialFileReader
Generating XML output for class regex_context_t
Generating XML output for class regex_t
Generating XML output for class LAMMPS_NS::TextFileReader
Generating XML output for class LAMMPS_NS::Tokenizer
Generating XML output for class LAMMPS_NS::TokenizerException
Generating XML output for class LAMMPS_NS::ubuf
Generating XML output for class udi_t
Generating XML output for class LAMMPS_NS::ValueTokenizer
Generating XML output for namespace LAMMPS_NS
Generating XML output for namespace LAMMPS_NS::MathSpecial
Generating XML output for namespace LAMMPS_NS::platform
Generating XML output for namespace LAMMPS_NS::utils
Generating XML output for namespace MathConst
Generating XML output for namespace MathEigen
Generating XML output for namespace std
Generating XML output for file arg_info.cpp
Generating XML output for file arg_info.h
Generating XML output for file atom.cpp
Generating XML output for file atom.h
Generating XML output for file input.cpp
Generating XML output for file input.h
Generating XML output for file lammps.cpp
Generating XML output for file lammps.h
Generating XML output for file library.cpp
Generating XML output for file library.h
Generating XML output for file lmptype.h
Generating XML output for file math_eigen.h
Generating XML output for file math_special.cpp
Generating XML output for file math_special.h
Generating XML output for file my_page.cpp
Generating XML output for file my_page.h
Generating XML output for file my_pool_chunk.cpp
Generating XML output for file my_pool_chunk.h
Generating XML output for file platform.cpp
Generating XML output for file platform.h
Generating XML output for file pointers.h
Generating XML output for file potential_file_reader.cpp
Generating XML output for file potential_file_reader.h
Generating XML output for file text_file_reader.cpp
Generating XML output for file text_file_reader.h
Generating XML output for file tokenizer.cpp
Generating XML output for file tokenizer.h
Generating XML output for file utils.cpp
Generating XML output for file utils.h
Generate XML output for dir /build/reproducible-path/lammps-20240207+dfsg/src/
Running plantuml with JAVA...
Running dot...
type lookup cache used 7693/262144 hits=62872 misses=7925
symbol lookup cache used 5303/262144 hits=49970 misses=5303
finished...
sed -e 's,@DOXYGEN_XML_DIR@,/build/reproducible-path/lammps-20240207+dfsg/doc/doxygen/xml,g' \
-e 's,@LAMMPS_SOURCE_DIR@,/build/reproducible-path/lammps-20240207+dfsg/doc/../src,g' \
-e 's,@LAMMPS_PYTHON_DIR@,/build/reproducible-path/lammps-20240207+dfsg/doc/../python,g' \
-e 's,@LAMMPS_DOC_DIR@,/build/reproducible-path/lammps-20240207+dfsg/doc,g' /build/reproducible-path/lammps-20240207+dfsg/doc/utils/sphinx-config/conf.py.in > /build/reproducible-path/lammps-20240207+dfsg/doc/utils/sphinx-config/conf.py
WARNING: The directory '/nonexistent/second-build/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you should use sudo's -H flag.
Obtaining file:///build/reproducible-path/lammps-20240207%2Bdfsg/doc/utils/converters
Installing build dependencies: started
Installing build dependencies: finished with status 'error'
error: subprocess-exited-with-error
× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> [8 lines of output]
WARNING: The directory '/nonexistent/second-build/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you should use sudo's -H flag.
WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object at 0xb5b358a0>: Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/
WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object at 0xb5b35978>: Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/
WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object at 0xb5b359c0>: Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/
WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object at 0xb5b359a8>: Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/
WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object at 0xb5b359f0>: Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/
ERROR: Could not find a version that satisfies the requirement setuptools>=40.8.0 (from versions: none)
ERROR: No matching distribution found for setuptools>=40.8.0
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error
× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> See above for output.
note: This error originates from a subprocess, and is likely not a problem with pip.
make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/doc/graphviz'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/doc/graphviz'
Running Sphinx v8.1.3
loading translations [en]... done
Initializing Spelling Checker 7.7.0
making output directory... done
Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`.
building [mo]: targets for 0 po files that are out of date
writing output...
building [html]: targets for 987 source files that are out of date
updating environment: [new config] 987 added, 0 changed, 0 removed
reading sources... [ 5%] Bibliography .. Developer_updating
reading sources... [ 10%] Developer_utils .. Howto_spherical
reading sources... [ 14%] Howto_spins .. Modify_contribute
reading sources... [ 19%] Modify_dump .. Speed_opt
reading sources... [ 24%] Speed_packages .. atc_extrinsic_exchange
reading sources... [ 29%] atc_fe_md_boundary .. atc_temperature_definition
reading sources... [ 33%] atc_time_filter .. compute_angmom_chunk
reading sources... [ 38%] compute_ave_sphere_atom .. compute_improper
reading sources... [ 43%] compute_improper_local .. compute_smd_tlsph_num_neighs
reading sources... [ 48%] compute_smd_tlsph_shape .. create_atoms
reading sources... [ 52%] create_bonds .. fix_amoeba_bitorsion
reading sources... [ 57%] fix_amoeba_pitorsion .. fix_freeze
reading sources... [ 62%] fix_gcmc .. fix_nve
reading sources... [ 67%] fix_nve_asphere .. fix_reaxff_bonds
reading sources... [ 71%] fix_reaxff_species .. fix_wall_gran_region
reading sources... [ 76%] fix_wall_piston .. neb_spin
reading sources... [ 81%] neigh_modify .. pair_exp6_rx
reading sources... [ 86%] pair_extep .. pair_momb
reading sources... [ 90%] pair_morse .. pair_tersoff_zbl
reading sources... [ 95%] pair_thole .. unfix
reading sources... [100%] units .. write_restart
WARNING: unknown directive or role name: f:func
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Classes_lammps.rst:4: ERROR: Unknown interpreted text role "f:func". [docutils]
WARNING: unknown directive or role name: f:func
<rst_prolog>:4: ERROR: Unknown interpreted text role "f:func". [docutils]
WARNING: unknown directive or role name: f:mod
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1: ERROR: Unknown interpreted text role "f:mod". [docutils]
WARNING: unknown directive or role name: f:mod
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:4: ERROR: Unknown interpreted text role "f:mod". [docutils]
WARNING: unknown directive or role name: f:mod
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:43: ERROR: Unknown interpreted text role "f:mod". [docutils]
WARNING: unknown directive or role name: f:func
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:64: ERROR: Unknown interpreted text role "f:func". [docutils]
WARNING: unknown directive or role name: f:func
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:64: ERROR: Unknown interpreted text role "f:func". [docutils]
WARNING: unknown directive or role name: f:func
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:133: ERROR: Unknown interpreted text role "f:func". [docutils]
WARNING: unknown directive or role name: f:func
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:133: ERROR: Unknown interpreted text role "f:func". [docutils]
WARNING: unknown directive or role name: f:func
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:133: ERROR: Unknown interpreted text role "f:func". [docutils]
WARNING: unknown directive or role name: f:func
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:133: ERROR: Unknown interpreted text role "f:func". [docutils]
WARNING: unknown directive or role name: f:mod
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:254: ERROR: Unknown interpreted text role "f:mod". [docutils]
WARNING: unknown directive or role name: f:module
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:257: ERROR: Unknown directive type "f:module".
.. f:module:: LIBLAMMPS [docutils]
WARNING: unknown directive or role name: f:mod
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:259: ERROR: Unknown interpreted text role "f:mod". [docutils]
WARNING: unknown directive or role name: f:currentmodule
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:262: ERROR: Unknown directive type "f:currentmodule".
.. f:currentmodule:: None [docutils]
WARNING: unknown directive or role name: f:type
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:264: ERROR: Unknown directive type "f:type".
.. f:type:: lammps
Derived type that is the general class of the Fortran interface.
It holds a reference to the :cpp:class:`LAMMPS <LAMMPS_NS::LAMMPS>`
class instance to which any of the included calls are forwarded.
:f handle: reference to the LAMMPS class
:ftype handle: c_ptr
:f style: derived type to access lammps style constants
:ftype style: type(lammps_style)
:f type: derived type to access lammps type constants
:ftype type: type(lammps_type)
:f dtype: derived type to access lammps data type constants
:ftype dtype: type(lammps_dtype)
:f close: :f:subr:`close`
:ftype close: subroutine
:f subroutine error: :f:subr:`error`
:ftype error: subroutine
:f file: :f:subr:`file`
:ftype file: subroutine
:f command: :f:subr:`command`
:ftype command: subroutine
:f commands_list: :f:subr:`commands_list`
:ftype commands_list: subroutine
:f commands_string: :f:subr:`commands_string`
:ftype commands_string: subroutine
:f get_natoms: :f:func:`get_natoms`
:ftype get_natoms: function
:f get_thermo: :f:func:`get_thermo`
:ftype get_thermo: function
:f last_thermo: :f:func:`last_thermo`
:ftype last_thermo: function
:f extract_box: :f:subr:`extract_box`
:ftype extract_box: subroutine
:f reset_box: :f:subr:`reset_box`
:ftype reset_box: subroutine
:f memory_usage: :f:subr:`memory_usage`
:ftype memory_usage: subroutine
:f get_mpi_comm: :f:func:`get_mpi_comm`
:ftype get_mpi_comm: function
:f extract_setting: :f:func:`extract_setting`
:ftype extract_setting: function
:f extract_global: :f:func:`extract_global`
:ftype extract_global: function
:f extract_atom: :f:func:`extract_atom`
:ftype extract_atom: function
:f extract_compute: :f:func:`extract_compute`
:ftype extract_compute: function
:f extract_fix: :f:func:`extract_fix`
:ftype extract_fix: function
:f extract_variable: :f:func:`extract_variable`
:ftype extract_variable: function
:f set_variable: :f:subr:`set_variable`
:ftype set_variable: subroutine
:f set_string_variable: :f:subr:`set_set_string_variable`
:ftype set_string_variable: subroutine
:f set_internal_variable: :f:subr:`set_internal_variable`
:ftype set_internal_variable: subroutine
:f gather_atoms: :f:subr:`gather_atoms`
:ftype gather_atoms: subroutine
:f gather_atoms_concat: :f:subr:`gather_atoms_concat`
:ftype gather_atoms_concat: subroutine
:f gather_atoms_subset: :f:subr:`gather_atoms_subset`
:ftype gather_atoms_subset: subroutine
:f scatter_atoms: :f:subr:`scatter_atoms`
:ftype scatter_atoms: subroutine
:f scatter_atoms_subset: :f:subr:`scatter_atoms_subset`
:ftype scatter_atoms_subset: subroutine
:f gather_bonds: :f:subr:`gather_bonds`
:ftype gather_bonds: subroutine
:f gather_angles: :f:subr:`gather_angles`
:ftype gather_angles: subroutine
:f gather_dihedrals: :f:subr:`gather_dihedrals`
:ftype gather_dihedrals: subroutine
:f gather_impropers: :f:subr:`gather_impropers`
:ftype gather_impropers: subroutine
:f gather: :f:subr:`gather`
:ftype gather: subroutine
:f gather_concat: :f:subr:`gather_concat`
:ftype gather_concat: subroutine
:f gather_subset: :f:subr:`gather_subset`
:ftype gather_subset: subroutine
:f scatter: :f:subr:`scatter`
:ftype scatter: subroutine
:f scatter_subset: :f:subr:`scatter_subset`
:ftype scatter_subset: subroutine
:f create_atoms: :f:subr:`create_atoms`
:ftype create_atoms: subroutine
:f find_pair_neighlist: :f:func:`find_pair_neighlist`
:ftype find_pair_neighlist: function
:f find_fix_neighlist: :f:func:`find_fix_neighlist`
:ftype find_fix_neighlist: function
:f find_compute_neighlist: :f:func:`find_compute_neighlist`
:ftype find_compute_neighlist: function
:f neighlist_num_elements: :f:func:`neighlist_num_elements`
:ftype neighlist_num_elements: function
:f neighlist_element_neighbors: :f:subr:`neighlist_element_neighbors`
:ftype neighlist_element_neighbors: subroutine
:f version: :f:func:`version`
:ftype version: function
:f get_os_info: :f:subr:`get_os_info`
:ftype get_os_info: subroutine
:f config_has_mpi_support: :f:func:`config_has_mpi_support`
:ftype config_has_mpi_support: function
:f config_has_gzip_support: :f:func:`config_has_gzip_support`
:ftype config_has_gzip_support: function
:f config_has_png_support: :f:func:`config_has_png_support`
:ftype config_has_png_support: function
:f config_has_jpeg_support: :f:func:`config_has_jpeg_support`
:ftype config_has_jpeg_support: function
:f config_has_ffmpeg_support: :f:func:`config_has_ffmpeg_support`
:ftype config_has_ffmpeg_support: function
:f config_has_exceptions: :f:func:`config_has_exceptions`
:ftype config_has_exceptions: function
:f config_has_package: :f:func:`config_has_package`
:ftype config_has_package: function
:f config_package_count: :f:func:`config_package_count`
:ftype config_package_count: function
:f config_package_name: :f:func:`config_package_name`
:ftype config_package_name: function
:f installed_packages: :f:subr:`installed_packages`
:ftype installed_packages: subroutine
:f config_accelerator: :f:func:`config_accelerator`
:ftype config_accelerator: function
:f has_gpu_device: :f:func:`has_gpu_device`
:ftype has_gpu_device: function
:f get_gpu_device_info: :f:subr:`get_gpu_device_info`
:ftype get_gpu_device_info: subroutine
:f has_style: :f:func:`has_style`
:ftype has_style: function
:f style_count: :f:func:`style_count`
:ftype style_count: function
:f style_name: :f:func:`style_name`
:ftype style_name: function
:f has_id: :f:func:`has_id`
:ftype has_id: function
:f id_count: :f:func:`id_count`
:ftype id_count: function
:f id_name: :f:subr:`id_name`
:ftype id_name: subroutine
:f plugin_count: :f:func:`plugin_count`
:ftype plugin_count: function
:f plugin_name: :f:subr:`plugin_name`
:ftype plugin_count: subroutine
:f encode_image_flags: :f:func:`encode_image_flags`
:ftype encode_image_flags: function
:f decode_image_flags: :f:subr:`decode_image_flags`
:ftype decode_image_flags: subroutine
:f set_fix_external_callback: :f:subr:`set_fix_external_callback`
:ftype set_fix_external_callback: subroutine
:f fix_external_get_force: :f:func:`fix_external_get_force`
:ftype fix_external_get_force: function
:f fix_external_set_energy_global: :f:subr:`fix_external_set_energy_global`
:ftype fix_external_set_energy_global: subroutine
:f fix_external_set_virial_global: :f:subr:`fix_external_set_virial_global`
:ftype fix_external_set_virial_global: subroutine
:f fix_external_set_energy_peratom: :f:subr:`fix_external_set_energy_peratom`
:ftype fix_external_set_energy_peratom: subroutine
:f fix_external_set_virial_peratom: :f:subr:`fix_external_set_virial_peratom`
:ftype fix_external_set_virial_peratom: subroutine
:f fix_external_set_vector_length: :f:subr:`fix_external_set_vector_length`
:ftype fix_external_set_vector_length: subroutine
:f fix_external_set_vector: :f:subr:`fix_external_set_vector`
:ftype fix_external_set_vector: subroutine
:f flush_buffers: :f:subr:`flush_buffers`
:ftype flush_buffers: subroutine
:f is_running: :f:func:`is_running`
:ftype is_running: function
:f force_timeout: :f:subr:`force_timeout`
:ftype force_timeout: subroutine
:f has_error: :f:func:`has_error`
:ftype has_error: function
:f get_last_error_message: :f:subr:`get_last_error_message`
:ftype get_last_error_message: subroutine [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:441: ERROR: Unknown directive type "f:function".
.. f:function:: lammps([args][,comm])
This is the constructor for the Fortran class and will forward
the arguments to a call to either :cpp:func:`lammps_open_fortran`
or :cpp:func:`lammps_open_no_mpi`. If the LAMMPS library has been
compiled with MPI support, it will also initialize MPI, if it has
not already been initialized before.
The *args* argument with the list of command line parameters is
optional and so it the *comm* argument with the MPI communicator.
If *comm* is not provided, ``MPI_COMM_WORLD`` is assumed. For
more details please see the documentation of :cpp:func:`lammps_open`.
:o args: arguments as list of strings
:otype args: character(len=\*),dimension(:),optional
:o comm: MPI communicator
:otype comm: integer,optional
:to: :cpp:func:`lammps_open_fortran`
:to: :cpp:func:`lammps_open_no_mpi`
:r lammps: an instance of the :f:type:`lammps` derived type
.. note::
The :f:mod:`MPI_F08` module, which defines Fortran 2008 bindings for MPI,
is not directly supported by this interface due to the complexities of
supporting both the :f:mod:`MPI_F08` and :f:mod:`MPI` modules at the same
time. However, you should be able to use the ``MPI_VAL`` member of the
``MPI_comm`` derived type to access the integer value of the
communicator, such as in
.. code-block:: fortran
PROGRAM testmpi
USE LIBLAMMPS
USE MPI_F08
TYPE(lammps) :: lmp
lmp = lammps(comm=MPI_COMM_SELF%MPI_VAL)
END PROGRAM testmpi [docutils]
WARNING: unknown directive or role name: f:type
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:480: ERROR: Unknown directive type "f:type".
.. f:type:: lammps_style
This derived type is there to provide a convenient interface for the style
constants used with :f:func:`extract_compute`, :f:func:`extract_fix`, and
:f:func:`extract_variable`. Assuming your LAMMPS instance is called ``lmp``,
these constants will be ``lmp%style%global``, ``lmp%style%atom``,
and ``lmp%style%local``. These values are identical to the values described
in :cpp:enum:`_LMP_STYLE_CONST` for the C library interface.
:f integer(c_int) global: used to request global data
:f integer(c_int) atom: used to request per-atom data
:f integer(c_int) local: used to request local data [docutils]
WARNING: unknown directive or role name: f:type
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:493: ERROR: Unknown directive type "f:type".
.. f:type:: lammps_type
This derived type is there to provide a convenient interface for the type
constants used with :f:func:`extract_compute`, :f:func:`extract_fix`, and
:f:func:`extract_variable`. Assuming your LAMMPS instance is called ``lmp``,
these constants will be ``lmp%type%scalar``, ``lmp%type%vector``, and
``lmp%type%array``. These values are identical to the values described
in :cpp:enum:`_LMP_TYPE_CONST` for the C library interface.
:f integer(c_int) scalar: used to request scalars
:f integer(c_int) vector: used to request vectors
:f integer(c_int) array: used to request arrays (matrices) [docutils]
WARNING: unknown directive or role name: f:type
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:506: ERROR: Unknown interpreted text role "f:type". [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:509: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: close([finalize])
This method will close down the LAMMPS instance through calling
:cpp:func:`lammps_close`. If the *finalize* argument is present and
has a value of ``.TRUE.``, then this subroutine also calls
:cpp:func:`lammps_kokkos_finalize` and
:cpp:func:`lammps_mpi_finalize`.
:o finalize: shut down the MPI environment of the LAMMPS
library if ``.TRUE.``.
:otype finalize: logical,optional
:to: :cpp:func:`lammps_close`
:to: :cpp:func:`lammps_mpi_finalize`
:to: :cpp:func:`lammps_kokkos_finalize` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:526: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: error(error_type, error_text)
This method is a wrapper around the :cpp:func:`lammps_error` function and
will dispatch an error through the LAMMPS Error class.
.. versionadded:: 3Nov2022
:p error_type: constant to select which Error class function to call
:ptype error_type: integer(c_int)
:p character(len=\*) error_text: error message
:to: :cpp:func:`lammps_error` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:540: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: file(filename)
This method will call :cpp:func:`lammps_file` to have LAMMPS read
and process commands from a file.
:p character(len=\*) filename: name of file with LAMMPS commands
:to: :cpp:func:`lammps_file` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:550: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: command(cmd)
This method will call :cpp:func:`lammps_command` to have LAMMPS
execute a single command.
:p character(len=\*) cmd: single LAMMPS command
:to: :cpp:func:`lammps_command` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:560: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: commands_list(cmds)
This method will call :cpp:func:`lammps_commands_list` to have LAMMPS
execute a list of input lines.
:p character(len=\*) cmd [dimension(:)]: list of LAMMPS input lines
:to: :cpp:func:`lammps_commands_list` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:570: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: commands_string(str)
This method will call :cpp:func:`lammps_commands_string` to have LAMMPS
execute a block of commands from a string.
:p character(len=\*) str: LAMMPS input in string
:to: :cpp:func:`lammps_commands_string` [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:580: ERROR: Unknown directive type "f:function".
.. f:function:: get_natoms()
This function will call :cpp:func:`lammps_get_natoms` and return the number
of atoms in the system.
:to: :cpp:func:`lammps_get_natoms`
:r real(c_double) natoms: number of atoms
.. note::
If you would prefer to get the number of atoms in its native format
(i.e., as a 32- or 64-bit integer, depending on how LAMMPS was compiled),
this can be extracted with :f:func:`extract_global`. [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:596: ERROR: Unknown directive type "f:function".
.. f:function:: get_thermo(name)
This function will call :cpp:func:`lammps_get_thermo` and return the value
of the corresponding thermodynamic keyword.
.. versionadded:: 3Nov2022
:p character(len=\*) name: string with the name of the thermo keyword
:to: :cpp:func:`lammps_get_thermo`
:r value [real(c_double)]: value of the requested thermo property or `0.0_c_double` [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:609: ERROR: Unknown directive type "f:function".
.. f:function:: last_thermo(what, index)
This function will call :cpp:func:`lammps_last_thermo` and returns
either a string or a pointer to a cached copy of LAMMPS last thermodynamic
output, depending on the data requested through *what*. Note that *index*
uses 1-based indexing to access thermo output columns.
.. versionadded:: 15Jun2023
Note that this function actually does not return a value, but rather
associates the pointer on the left side of the assignment to point to
internal LAMMPS data (with the exception of string data, which are
copied and returned as ordinary Fortran strings). Pointers must be
of the correct data type to point to said data (typically
``INTEGER(c_int)``, ``INTEGER(c_int64_t)``, or ``REAL(c_double)``).
The pointer being associated with LAMMPS data is type-checked at
run-time via an overloaded assignment operator. The pointers
returned by this function point to temporary, read-only data that may
be overwritten at any time, so their target values need to be copied
to local storage if they are supposed to persist.
For example,
.. code-block:: fortran
PROGRAM thermo
USE LIBLAMMPS
USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_double, c_int64_t, c_int
TYPE(lammps) :: lmp
INTEGER(KIND=c_int64_t), POINTER :: ntimestep, bval
REAL(KIND=c_double), POINTER :: dval
INTEGER(KIND=c_int), POINTER :: nfield, typ, ival
INTEGER(KIND=c_int) :: i
CHARACTER(LEN=11) :: key
lmp = lammps()
CALL lmp%file('in.sysinit')
ntimestep = lmp%last_thermo('step', 0)
nfield = lmp%last_thermo('num', 0)
PRINT*, 'Last thermo output on step: ', ntimestep, ' Number of fields: ', nfield
DO i=1, nfield
key = lmp%last_thermo('keyword',i)
typ = lmp%last_thermo('type',i)
IF (typ == lmp%dtype%i32) THEN
ival = lmp%last_thermo('data',i)
PRINT*, key, ':', ival
ELSE IF (typ == lmp%dtype%i64) THEN
bval = lmp%last_thermo('data',i)
PRINT*, key, ':', bval
ELSE IF (typ == lmp%dtype%r64) THEN
dval = lmp%last_thermo('data',i)
PRINT*, key, ':', dval
END IF
END DO
CALL lmp%close(.TRUE.)
END PROGRAM thermo
would extract the last timestep where thermo output was done and the number
of columns it printed. Then it loops over the columns to print out column
header keywords and the corresponding data.
.. note::
If :f:func:`last_thermo` returns a string, the string must have a length
greater than or equal to the length of the string (not including the
terminal ``NULL`` character) that LAMMPS returns. If the variable's
length is too short, the string will be truncated. As usual in Fortran,
strings are padded with spaces at the end. If you use an allocatable
string, the string **must be allocated** prior to calling this function.
:p character(len=\*) what: string with the name of the thermo keyword
:p integer(c_int) index: 1-based column index
:to: :cpp:func:`lammps_last_thermo`
:r pointer [polymorphic]: pointer to LAMMPS data. The left-hand side of the
assignment should be either a string (if expecting string data) or a
C-compatible pointer (e.g., ``INTEGER(c_int), POINTER :: nlocal``) to the
extracted property.
.. warning::
Modifying the data in the location pointed to by the returned pointer
may lead to inconsistent internal data and thus may cause failures,
crashes, or bogus simulations. In general, it is much better
to use a LAMMPS input command that sets or changes these parameters.
Using an input command will take care of all side effects and necessary
updates of settings derived from such settings. [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:699: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: extract_box([boxlo][, boxhi][, xy][, yz][, xz][, pflags][, boxflag])
This subroutine will call :cpp:func:`lammps_extract_box`. All
parameters are optional, though obviously at least one should be
present. The parameters *pflags* and *boxflag* are stored in LAMMPS
as integers, but should be declared as ``LOGICAL`` variables when
calling from Fortran.
.. versionadded:: 3Nov2022
:o real(c_double) boxlo [dimension(3),optional]: vector in which to store
lower-bounds of simulation box
:o real(c_double) boxhi [dimension(3),optional]: vector in which to store
upper-bounds of simulation box
:o real(c_double) xy [optional]: variable in which to store *xy* tilt factor
:o real(c_double) yz [optional]: variable in which to store *yz* tilt factor
:o real(c_double) xz [optional]: variable in which to store *xz* tilt factor
:o pflags: vector in which to store
periodicity flags (``.TRUE.`` means periodic in that dimension)
:otype pflags: logical,dimension(3),optional
:o boxflag: variable in which to store boolean denoting
whether the box will change during a simulation
(``.TRUE.`` means box will change)
:otype boxflag: logical,optional
:to: :cpp:func:`lammps_extract_box` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:741: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: reset_box(boxlo, boxhi, xy, yz, xz)
This subroutine will call :cpp:func:`lammps_reset_box`. All parameters
are required.
.. versionadded:: 3Nov2022
:p real(c_double) boxlo [dimension(3)]: vector of three doubles containing
the lower box boundary
:p real(c_double) boxhi [dimension(3)]: vector of three doubles containing
the upper box boundary
:p real(c_double) xy: *x--y* tilt factor
:p real(c_double) yz: *y--z* tilt factor
:p real(c_double) xz: *x--z* tilt factor
:to: :cpp:func:`lammps_reset_box` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:759: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: memory_usage(meminfo)
This subroutine will call :cpp:func:`lammps_memory_usage` and store the
result in the three-element array *meminfo*.
.. versionadded:: 3Nov2022
:p real(c_double) meminfo [dimension(3)]: vector of three doubles in which
to store memory usage data
:to: :cpp:func:`lammps_memory_usage` [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:772: ERROR: Unknown directive type "f:function".
.. f:function:: get_mpi_comm()
This function returns a Fortran representation of the LAMMPS "world"
communicator.
.. versionadded:: 3Nov2022
:to: :cpp:func:`lammps_get_mpi_comm`
:r comm: Fortran integer equivalent to the MPI communicator LAMMPS is
using
:rtype comm: integer
.. note::
The C library interface currently returns type ``int`` instead of
type ``MPI_Fint``, which is the C type corresponding to Fortran
``INTEGER`` types of the default kind. On most compilers, these
are the same anyway, but this interface exchanges values this way
to avoid warning messages.
.. note::
The :f:mod:`MPI_F08` module, which defines Fortran 2008 bindings for MPI,
is not directly supported by this function. However, you should be
able to convert between the two using the `MPI_VAL` member of the
communicator. For example,
.. code-block:: fortran
USE MPI_F08
USE LIBLAMMPS
TYPE(lammps) :: lmp
TYPE(MPI_Comm) :: comm
! ... [commands to set up LAMMPS/etc.]
comm%MPI_VAL = lmp%get_mpi_comm()
should assign an :f:mod:`MPI_F08` communicator properly. [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:812: ERROR: Unknown directive type "f:function".
.. f:function:: extract_setting(keyword)
Query LAMMPS about global settings. See the documentation for the
:cpp:func:`lammps_extract_setting` function from the C library.
.. versionadded:: 3Nov2022
:p character(len=\*) keyword: string containing the name of the thermo keyword
:to: :cpp:func:`lammps_extract_setting`
:r integer(c_int) setting: value of the queried setting or :math:`-1` if
unknown [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:826: ERROR: Unknown directive type "f:function".
.. f:function:: extract_global(name)
This function calls :cpp:func:`lammps_extract_global` and returns
either a string or a pointer to internal global LAMMPS data,
depending on the data requested through *name*.
.. versionadded:: 3Nov2022
Note that this function actually does not return a value, but rather
associates the pointer on the left side of the assignment to point to
internal LAMMPS data (with the exception of string data, which are
copied and returned as ordinary Fortran strings). Pointers must be of
the correct data type to point to said data (typically
``INTEGER(c_int)``, ``INTEGER(c_int64_t)``, or ``REAL(c_double)``)
and have compatible kind and rank. The pointer being associated with
LAMMPS data is type-, kind-, and rank-checked at run-time via an
overloaded assignment operator. The pointers returned by this
function are generally persistent; therefore it is not necessary to
call the function again unless a :doc:`clear` command has been
issued, which wipes out and recreates the contents of the
:cpp:class:`LAMMPS <LAMMPS_NS::LAMMPS>` class.
For example,
.. code-block:: fortran
PROGRAM demo
USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int64_t, c_int, c_double
USE LIBLAMMPS
TYPE(lammps) :: lmp
INTEGER(c_int), POINTER :: nlocal => NULL()
INTEGER(c_int64_t), POINTER :: ntimestep => NULL()
REAL(c_double), POINTER :: dt => NULL()
CHARACTER(LEN=10) :: units
lmp = lammps()
! other commands
nlocal = lmp%extract_global('nlocal')
ntimestep = lmp%extract_global('ntimestep')
dt = lmp%extract_global('dt')
units = lmp%extract_global('units')
! more commands
lmp.close(.TRUE.)
END PROGRAM demo
would extract the number of atoms on this processor, the current time step,
the size of the current time step, and the units being used into the
variables *nlocal*, *ntimestep*, *dt*, and *units*, respectively.
.. note::
If :f:func:`extract_global` returns a string, the string must have
a length greater than or equal to the length of the string (not
including the terminal ``NULL`` character) that LAMMPS returns. If
the variable's length is too short, the string will be
truncated. As usual in Fortran, strings are padded with spaces at
the end. If you use an allocatable string, the string **must be
allocated** prior to calling this function, but you can
automatically reallocate it to the correct length after the
function returns, viz.,
.. code-block :: fortran
PROGRAM test
USE LIBLAMMPS
TYPE(lammps) :: lmp
CHARACTER(LEN=:), ALLOCATABLE :: str
lmp = lammps()
CALL lmp%command('units metal')
ALLOCATE(CHARACTER(LEN=80) :: str)
str = lmp%extract_global('units')
str = TRIM(str) ! re-allocates to length len_trim(str) here
PRINT*, LEN(str), LEN_TRIM(str)
END PROGRAM test
will print the number 5 (the length of the word "metal") twice.
:p character(len=\*) name: string with the name of the property to extract
:to: :cpp:func:`lammps_extract_global`
:r pointer [polymorphic]: pointer to LAMMPS data. The left-hand side of the
assignment should be either a string (if expecting string data) or a
C-compatible pointer (e.g., ``INTEGER(c_int), POINTER :: nlocal``) to the
extracted property. If expecting vector data, the pointer should have
dimension ":".
.. warning::
Modifying the data in the location pointed to by the returned pointer
may lead to inconsistent internal data and thus may cause failures,
crashes, or bogus simulations. In general, it is much better
to use a LAMMPS input command that sets or changes these parameters.
Using an input command will take care of all side effects and necessary
updates of settings derived from such settings. [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:921: ERROR: Unknown directive type "f:function".
.. f:function:: extract_atom(name)
This function calls :cpp:func:`lammps_extract_atom` and returns a pointer to
LAMMPS data tied to the :cpp:class:`Atom` class, depending on the data
requested through *name*.
.. versionadded:: 3Nov2022
Note that this function actually does not return a pointer, but rather
associates the pointer on the left side of the assignment to point
to internal LAMMPS data. Pointers must be of the correct type, kind, and
rank (e.g., ``INTEGER(c_int), DIMENSION(:)`` for "type", "mask", or "id";
``INTEGER(c_int64_t), DIMENSION(:)`` for "id" if LAMMPS was compiled
with the ``-DLAMMPS_BIGBIG`` flag; ``REAL(c_double), DIMENSION(:,:)`` for
"x", "v", or "f"; and so forth). The pointer being associated with LAMMPS
data is type-, kind-, and rank-checked at run-time.
:p character(len=\*) name: string with the name of the property to extract
:to: :cpp:func:`lammps_extract_atom`
:r pointer: pointer to LAMMPS data. The left-hand side of the
assignment should be a C-interoperable pointer of appropriate kind and rank
(e.g., ``INTEGER(c_int), POINTER :: mask(:)``) to the extracted
property. If expecting vector data, the pointer should have dimension ":";
if expecting matrix data, the pointer should have dimension ":,:".
:rtype pointer: polymorphic
.. warning::
Pointers returned by this function are generally not persistent, as
per-atom data may be redistributed, reallocated, and reordered at every
re-neighboring operation. It is advisable to re-bind pointers using
:f:func:`extract_atom` between runs.
.. admonition:: Array index order
Two-dimensional arrays returned from :f:func:`extract_atom` will be
**transposed** from equivalent arrays in C, and they will be indexed
from 1 instead of 0. For example, in C,
.. code-block:: c
void *lmp;
double **x;
/* more code to setup, etc. */
x = lammps_extract_atom(lmp, "x");
printf("%f\n", x[5][1]);
will print the *y*-coordinate of the sixth atom on this processor.
Conversely,
.. code-block:: fortran
TYPE(lammps) :: lmp
REAL(c_double), DIMENSION(:,:), POINTER :: x => NULL()
! more code to setup, etc.
x = lmp%extract_atom("x")
PRINT '(f0.6)', x(2,6)
will print the *y*-coordinate of the sixth atom on this processor
(note the transposition of the two indices). This is not a choice, but
rather a consequence of the different conventions adopted by the Fortran
and C standards decades ago: in C, the block of data
.. parsed-literal::
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
interpreted as a :math:`4\times4` matrix would be
.. math::
\begin{bmatrix}
1 & 2 & 3 & 4 \\
5 & 6 & 7 & 8 \\
9 & 10 & 11 & 12 \\
13 & 14 & 15 & 16
\end{bmatrix},
that is, in row-major order. In Fortran, the same block of data is
interpreted in column-major order, namely,
.. math::
\begin{bmatrix}
1 & 5 & 9 & 13 \\
2 & 6 & 10 & 14 \\
3 & 7 & 11 & 15 \\
4 & 8 & 12 & 16
\end{bmatrix}.
This difference in interpretation of the same block of data by the two
languages means, in effect, that matrices from C or C++ will be
transposed when interpreted in Fortran.
.. note::
If you would like the indices to start at 0 instead of 1 (which follows
typical notation in C and C++, but not Fortran), you can create another
pointer and associate it thus:
.. code-block:: fortran
REAL(c_double), DIMENSION(:,:), POINTER :: x, x0
x = lmp%extract_atom("x")
x0(0:,0:) => x
The above would cause the dimensions of *x* to be (1:3, 1:nmax)
and those of *x0* to be (0:2, 0:nmax\ :math:`-`\ 1). [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1032: ERROR: Unknown directive type "f:function".
.. f:function:: extract_compute(id, style, type)
This function calls :cpp:func:`lammps_extract_compute` and returns a pointer
to LAMMPS data tied to the :cpp:class:`Compute` class, specifically data
provided by the compute identified by *id*. Computes may provide global,
per-atom, or local data, and those data may be a scalar, a vector, or an
array. Since computes may provide multiple kinds of data, the user is
required to specify which set of data is to be returned through the
*style* and *type* variables.
.. versionadded:: 3Nov2022
Note that this function actually does not return a value, but rather
associates the pointer on the left side of the assignment to point to
internal LAMMPS data. Pointers must be of the correct data type to point to
said data (i.e., ``REAL(c_double)``) and have compatible rank. The pointer
being associated with LAMMPS data is type-, kind-, and rank-checked at
run-time via an overloaded assignment operator.
For example,
.. code-block:: fortran
TYPE(lammps) :: lmp
REAL(c_double), DIMENSION(:), POINTER :: COM
! code to setup, create atoms, etc.
CALL lmp%command('compute COM all com')
COM = lmp%extract_compute('COM', lmp%style%global, lmp%style%type)
will bind the variable *COM* to the center of mass of the atoms created in
your simulation. The vector in this case has length 3; the length (or, in
the case of array data, the number of rows and columns) is determined for
you based on data from the :cpp:class:`Compute` class.
.. admonition:: Array index order
Two-dimensional arrays returned from :f:func:`extract_compute` will be
**transposed** from equivalent arrays in C, and they will be indexed
from 1 instead of 0. See the note at :f:func:`extract_atom` for
further details.
The following combinations are possible (assuming ``lmp`` is the name of
your LAMMPS instance):
.. list-table::
:header-rows: 1
:widths: auto
* - Style
- Type
- Type to assign to
- Returned data
* - ``lmp%style%global``
- ``lmp%type%scalar``
- ``REAL(c_double), POINTER``
- Global scalar
* - ``lmp%style%global``
- ``lmp%type%vector``
- ``REAL(c_double), DIMENSION(:), POINTER``
- Global vector
* - ``lmp%style%global``
- ``lmp%type%array``
- ``REAL(c_double), DIMENSION(:,:), POINTER``
- Global array
* - ``lmp%style%atom``
- ``lmp%type%vector``
- ``REAL(c_double), DIMENSION(:), POINTER``
- Per-atom vector
* - ``lmp%style%atom``
- ``lmp%type%array``
- ``REAL(c_double), DIMENSION(:,:), POINTER``
- Per-atom array
* - ``lmp%style%local``
- ``lmp%type%vector``
- ``REAL(c_double), DIMENSION(:), POINTER``
- Local vector
* - ``lmp%style%local``
- ``lmp%type%array``
- ``REAL(c_double), DIMENSION(:,:), POINTER``
- Local array
:p character(len=\*) id: compute ID from which to extract data
:p integer(c_int) style: value indicating the style of data to extract
(global, per-atom, or local)
:p integer(c_int) type: value indicating the type of data to extract
(scalar, vector, or array)
:to: :cpp:func:`lammps_extract_compute`
:r pointer: pointer to LAMMPS data. The left-hand side of the assignment
should be a C-compatible pointer (e.g., ``REAL(c_double), POINTER :: x``)
to the extracted property. If expecting vector data, the pointer should
have dimension ":"; if expecting array (matrix) data, the pointer should
have dimension ":,:".
:rtype pointer: polymorphic
.. note::
If the compute's data are not already computed for the current step, the
compute will be invoked. LAMMPS cannot easily check at that time if it is
valid to invoke a compute, so it may fail with an error. The caller has
to check to avoid such an error.
.. warning::
The pointers returned by this function are generally not persistent,
since the computed data may be re-distributed, re-allocated, and
re-ordered at every invocation. It is advisable to re-invoke this
function before the data are accessed or make a copy if the data are to
be used after other LAMMPS commands have been issued. Do **not** modify
the data returned by this function. [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1144: ERROR: Unknown directive type "f:function".
.. f:function:: extract_fix(id, style, type[, nrow][, ncol])
This function calls :cpp:func:`lammps_extract_fix` and returns a pointer to
LAMMPS data tied to the :cpp:class:`Fix` class, specifically data provided
by the fix identified by *id*. Fixes may provide global, per-atom, or
local data, and those data may be a scalar, a vector, or an array. Since
many fixes provide multiple kinds of data, the user is required to specify
which set of data is to be returned through the *style* and *type*
variables.
.. versionadded:: 3Nov2022
Global data are calculated at the time they are requested and are only
available element-by-element. As such, the user is expected to provide
the *nrow* variable to specify which element of a global vector or the
*nrow* and *ncol* variables to specify which element of a global array the
user wishes LAMMPS to return. The *ncol* variable is optional for global
scalar or vector data, and both *nrow* and *ncol* are optional when a
global scalar is requested, as well as when per-atom or local data are
requested. The following combinations are possible (assuming ``lmp`` is the
name of your LAMMPS instance):
.. list-table::
:header-rows: 1
:widths: auto
* - Style
- Type
- nrow
- ncol
- Type to assign to
- Returned data
* - ``lmp%style%global``
- ``lmp%type%scalar``
- Ignored
- Ignored
- ``REAL(c_double)``
- Global scalar
* - ``lmp%style%global``
- ``lmp%type%vector``
- Required
- Ignored
- ``REAL(c_double)``
- Element of global vector
* - ``lmp%style%global``
- ``lmp%type%array``
- Required
- Required
- ``REAL(c_double)``
- Element of global array
* - ``lmp%style%atom``
- ``lmp%type%scalar``
-
-
-
- (not allowed)
* - ``lmp%style%atom``
- ``lmp%type%vector``
- Ignored
- Ignored
- ``REAL(c_double), DIMENSION(:), POINTER``
- Per-atom vector
* - ``lmp%style%atom``
- ``lmp%type%array``
- Ignored
- Ignored
- ``REAL(c_double), DIMENSION(:,:), POINTER``
- Per-atom array
* - ``lmp%style%local``
- ``lmp%type%scalar``
-
-
-
- (not allowed)
* - ``lmp%style%local``
- ``lmp%type%vector``
- Ignored
- Ignored
- ``REAL(c_double), DIMENSION(:), POINTER``
- Per-atom vector
* - ``lmp%style%local``
- ``lmp%type%array``
- Ignored
- Ignored
- ``REAL(c_double), DIMENSION(:,:), POINTER``
- Per-atom array
In the case of global data, this function returns a value of type
``REAL(c_double)``. For per-atom or local data, this function does not
return a value but instead associates the pointer on the left side of the
assignment to point to internal LAMMPS data. Pointers must be of the correct
type and kind to point to said data (i.e., ``REAL(c_double)``) and have
compatible rank. The pointer being associated with LAMMPS data is type-,
kind-, and rank-checked at run-time via an overloaded assignment operator.
For example,
.. code-block:: fortran
TYPE(lammps) :: lmp
REAL(c_double) :: dr, dx, dy, dz
! more code to set up, etc.
lmp%command('fix george all recenter 2 2 2')
! more code
dr = lmp%extract_fix("george", lmp%style%global, lmp%style%scalar)
dx = lmp%extract_fix("george", lmp%style%global, lmp%style%vector, 1)
dy = lmp%extract_fix("george", lmp%style%global, lmp%style%vector, 2)
dz = lmp%extract_fix("george", lmp%style%global, lmp%style%vector, 3)
will extract the global scalar calculated by
:doc:`fix recenter <fix_recenter>` into the variable *dr* and the
three elements of the global vector calculated by fix recenter into the
variables *dx*, *dy*, and *dz*, respectively.
If asked for per-atom or local data, :f:func:`extract_compute` returns a
pointer to actual LAMMPS data. The pointer so returned will have the
appropriate size to match the internal data, and will be
type/kind/rank-checked at the time of the assignment. For example,
.. code-block:: fortran
TYPE(lammps) :: lmp
REAL(c_double), DIMENSION(:), POINTER :: r
! more code to set up, etc.
lmp%command('fix state all store/state 0 x y z')
! more code
r = lmp%extract_fix('state', lmp%style%atom, lmp%type%array)
will bind the pointer *r* to internal LAMMPS data representing the per-atom
array computed by :doc:`fix store/state <fix_store_state>` when three
inputs are specified. Similarly,
.. code-block:: fortran
TYPE(lammps) :: lmp
REAL(c_double), DIMENSION(:), POINTER :: x
! more code to set up, etc.
lmp%command('fix state all store/state 0 x')
! more code
x = lmp%extract_fix('state', lmp%style%atom, lmp%type%vector)
will associate the pointer *x* with internal LAMMPS data corresponding to
the per-atom vector computed by :doc:`fix store/state <fix_store_state>`
when only one input is specified. Similar examples with ``lmp%style%atom``
replaced by ``lmp%style%local`` will extract local data from fixes that
define local vectors and/or arrays.
.. warning::
The pointers returned by this function for per-atom or local data are
generally not persistent, since the computed data may be redistributed,
reallocated, and reordered at every invocation of the fix. It is thus
advisable to re-invoke this function before the data are accessed or to
make a copy if the data are to be used after other LAMMPS commands have
been issued.
.. note::
LAMMPS cannot easily check if it is valid to access the data, so it
may fail with an error. The caller has to avoid such an error.
:p character(len=\*) id: string with the name of the fix from which
to extract data
:p integer(c_int) style: value indicating the style of data to extract
(global, per-atom, or local)
:p integer(c_int) type: value indicating the type of data to extract
(scalar, vector, or array)
:p integer(c_int) nrow: row index (used only for global vectors and arrays)
:p integer(c_int) ncol: column index (only used for global arrays)
:to: :cpp:func:`lammps_extract_fix`
:r data: LAMMPS data (for global data) or a pointer to LAMMPS data
(for per-atom or local data). The left-hand side of the assignment should
be of type ``REAL(c_double)`` and have appropriate rank (i.e.,
``DIMENSION(:)`` if expecting per-atom or local vector data and
``DIMENSION(:,:)`` if expecting per-atom or local array data). If expecting
local or per-atom data, it should have the ``POINTER`` attribute, but
if expecting global data, it should be an ordinary (non-``POINTER``)
variable.
:rtype data: polymorphic
.. admonition:: Array index order
Two-dimensional global, per-atom, or local array data from
:f:func:`extract_fix` will be **transposed** from equivalent arrays in
C (or in the ordinary LAMMPS interface accessed through thermodynamic
output), and they will be indexed from 1, not 0. This is true even for
global data, which are returned as scalars---this is done primarily so
the interface is consistent, as there is no choice but to transpose the
indices for per-atom or local array data. See the similar note under
:f:func:`extract_atom` for further details. [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1337: ERROR: Unknown directive type "f:function".
.. f:function:: extract_variable(name[,group])
This function calls :cpp:func:`lammps_extract_variable` and returns a
scalar, vector, or string containing the value of the variable identified by
*name*. When the variable is an *equal*-style variable (or one compatible
with that style such as *internal*), the variable is evaluated and the
corresponding value returned. When the variable is an *atom*-style variable,
the variable is evaluated and a vector of values is returned. With all
other variables, a string is returned. The *group* argument is only used
for *atom* style variables and is ignored otherwise. If *group* is absent
for *atom*-style variables, the group is assumed to be "all".
.. versionadded:: 3Nov2022
This function returns the values of the variables, not pointers to them.
Vectors pointing to *atom*-style variables should be of type
``REAL(c_double)``, be of rank 1 (i.e., ``DIMENSION(:)``), and have the
``ALLOCATABLE`` attribute.
.. note::
Unlike the C library interface, the Fortran interface does not require
you to deallocate memory when you are through; this is done for you,
behind the scenes.
For example,
.. code-block:: fortran
TYPE(lammps) :: lmp
REAL(c_double) :: area
! more code to set up, etc.
lmp%command('variable A equal lx*ly')
! more code
area = lmp%extract_variable("A")
will extract the *x*\ --*y* cross-sectional area of the simulation into the
variable *area*.
:p character(len=\*) name: variable name to evaluate
:o character(len=\*) group [optional]: group for which to extract per-atom
data (if absent, use "all")
:to: :cpp:func:`lammps_extract_variable`
:r data: scalar of type ``REAL(c_double)`` (for *equal*-style
variables and others that are *equal*-compatible), vector of type
``REAL(c_double), DIMENSION(:), ALLOCATABLE`` for *atom*- or *vector*-style
variables, or ``CHARACTER(LEN=*)`` for *string*-style and compatible
variables. Strings whose length is too short to hold the result will be
truncated. Allocatable strings must be allocated before this function is
called; see note at :f:func:`extract_global` regarding allocatable strings.
Allocatable arrays (for *atom*- and *vector*-style data) will be
reallocated on assignment.
:rtype data: polymorphic [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1401: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: set_variable(name, str)
Set the value of a string-style variable.
.. deprecated:: 7Feb2024
This function assigns a new value from the string *str* to the string-style
variable *name*\ . If *name* does not exist or is not a string-style
variable, an error is generated.
.. warning::
This subroutine is deprecated and :f:subr:`set_string_variable`
should be used instead.
:p character(len=*) name: name of the variable
:p character(len=*) str: new value to assign to the variable
:to: :cpp:func:`lammps_set_variable` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1422: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: set_string_variable(name, str)
Set the value of a string-style variable.
.. versionadded:: 7Feb2024
This function assigns a new value from the string *str* to the string-style
variable *name*\ . If *name* does not exist or is not a string-style
variable, an error is generated.
:p character(len=*) name: name of the variable
:p character(len=*) str: new value to assign to the variable
:to: :cpp:func:`lammps_set_string_variable` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1438: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: set_internal_variable(name, val)
Set the value of a internal-style variable.
.. versionadded:: 7Feb2024
This function assigns a new value from the floating-point number *val* to
the internal-style variable *name*\ . If *name* does not exist or is not
an internal-style variable, an error is generated.
:p character(len=*) name: name of the variable
:p read(c_double) val: new value to assign to the variable
:to: :cpp:func:`lammps_set_internal_variable` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1454: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: gather_atoms(name, count, data)
This function calls :cpp:func:`lammps_gather_atoms` to gather the named
atom-based entity for all atoms on all processors and return it in the
vector *data*. The vector *data* will be ordered by atom
ID, which requires consecutive atom IDs (1 to *natoms*).
.. versionadded:: 3Nov2022
If you need a similar array but have non-consecutive atom IDs, see
:f:func:`gather_atoms_concat`; for a similar array but for a subset
of atoms, see :f:func:`gather_atoms_subset`.
The *data* array will be ordered in groups of *count* values, sorted by atom
ID (e.g., if *name* is *x* and *count* = 3, then *data* = [*x*\ (1,1),
*x*\ (2,1), *x*\ (3,1), *x*\ (1,2), *x*\ (2,2), *x*\ (3,2), *x*\ (1,3),
:math:`\dots`]); *data* must be ``ALLOCATABLE`` and will be allocated to
length (*count* :math:`\times` *natoms*), as queried by
:f:func:`get_natoms`.
This function is not compatible with ``-DLAMMPS_BIGBIG``.
:p character(len=\*) name: desired quantity (e.g., *x* or *mask*)
:p integer(c_int) count: number of per-atom values you expect per atom
(e.g., 1 for *type*, *mask*, or *charge*; 3 for *x*, *v*, or *f*). Use
*count* = 3 with *image* if you want a single image flag unpacked into
*x*/*y*/*z* components.
:p data: array into which to store
the data. Array *must* have the ``ALLOCATABLE`` attribute and be of rank 1
(i.e., ``DIMENSION(:)``). If this array is already allocated, it will be
reallocated to fit the length of the incoming data. It should have type
``INTEGER(c_int)`` if expecting integer data and ``REAL(c_double)`` if
expecting floating-point data.
:ptype data: polymorphic,dimension(:),allocatable
:to: :cpp:func:`lammps_gather_atoms`
.. note::
If you want data from this function to be accessible as a two-dimensional
array, you can declare a rank-2 pointer and reassign it, like so:
.. code-block:: fortran
USE, INTRINSIC :: ISO_C_BINDING
USE LIBLAMMPS
TYPE(lammps) :: lmp
REAL(c_double), DIMENSION(:), ALLOCATABLE, TARGET :: xdata
REAL(c_double), DIMENSION(:,:), POINTER :: x
! other code to set up, etc.
CALL lmp%gather_atoms('x',3,xdata)
x(1:3,1:size(xdata)/3) => xdata
You can then access the *y*\ -component of atom 3 with ``x(2,3)``.
See the note about array index order at :f:func:`extract_atom`. [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1511: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: gather_atoms_concat(name, count, data)
This function calls :cpp:func:`lammps_gather_atoms_concat` to gather the
named atom-based entity for all atoms on all processors and return it in the
vector *data*.
.. versionadded:: 3Nov2022
The vector *data* will not be ordered by atom ID, and there is no
restriction on the IDs being consecutive. If you need the IDs, you can do
another :f:func:`gather_atoms_concat` with *name* set to ``id``.
If you need a similar array but have consecutive atom IDs, see
:f:func:`gather_atoms`; for a similar array but for a subset of atoms, see
:f:func:`gather_atoms_subset`.
This function is not compatible with ``-DLAMMPS_BIGBIG``.
:p character(len=\*) name: desired quantity (e.g., *x* or *mask*)
:p integer(c_int) count: number of per-atom values you expect per atom
(e.g., 1 for *type*, *mask*, or *charge*; 3 for *x*, *v*, or *f*). Use
*count* = 3 with *image* if you want a single image flag unpacked into
*x*/*y*/*z* components.
:p data: array into which to store
the data. Array *must* have the ``ALLOCATABLE`` attribute and be of rank 1
(i.e., ``DIMENSION(:)``). If this array is already allocated, it will be
reallocated to fit the length of the incoming data. It should have type
``INTEGER(c_int)`` if expecting integer data and ``REAL(c_double)`` if
expecting floating-point data.
:ptype data: polymorphic,dimension(:),allocatable
:to: :cpp:func:`lammps_gather_atoms_concat` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1545: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: gather_atoms_subset(name, count, ids, data)
This function calls :cpp:func:`lammps_gather_atoms_subset` to gather the
named atom-based entity for the atoms in the array *ids* from all processors
and return it in the vector *data*.
.. versionadded:: 3Nov2022
This subroutine gathers data for the requested atom IDs and stores them in a
one-dimensional allocatable array. The data will be ordered by
atom ID, but there is no requirement that the IDs be consecutive. If you
wish to return a similar array for *all* the atoms, use
:f:func:`gather_atoms` or :f:func:`gather_atoms_concat`.
The *data* array will be in groups of *count* values, sorted by atom ID
in the same order as the array *ids* (e.g., if *name* is *x*, *count* = 3,
and *ids* is [100, 57, 210], then *data* might look like
[*x*\ (1,100), *x*\ (2,100), *x*\ (3,100), *x*\ (1,57), *x*\ (2,57),
*x*\ (3,57), *x*\ (1,210), :math:`\dots`]; *ids* must be provided by the
user, and *data* must be of rank 1 (i.e., ``DIMENSION(:)``) and have the
``ALLOCATABLE`` attribute.
This function is not compatible with ``-DLAMMPS_BIGBIG``.
:p character(len=\*) name: desired quantity (e.g., *x* or *mask*)
:p integer(c_int) count: number of per-atom values you expect per atom
(e.g., 1 for *type*, *mask*, or *charge*; 3 for *x*, *v*, or *f*). Use
*count* = 3 with *image* if you want a single image flag unpacked into
*x*/*y*/*z* components.
:p integer(c_int) ids [dimension(:)]: atom IDs corresponding to the atoms
to be gathered
:p data: array into which to store
the data. Array *must* have the ``ALLOCATABLE`` attribute and be of rank 1
(i.e., ``DIMENSION(:)``). If this array is already allocated, it will be
reallocated to fit the length of the incoming data. It should have type
``INTEGER(c_int)`` if expecting integer data and ``REAL(c_double)`` if
expecting floating-point data.
:ptype data: polymorphic,dimension(:),allocatable
:to: :cpp:func:`lammps_gather_atoms_subset` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1587: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: scatter_atoms(name, data)
This function calls :cpp:func:`lammps_scatter_atoms` to scatter the named
atom-based entities in *data* to all processors.
.. versionadded:: 3Nov2022
This subroutine takes data stored in a one-dimensional array supplied by the
user and scatters them to all atoms on all processors. The data must be
ordered by atom ID, with the requirement that the IDs be consecutive.
Use :f:func:`scatter_atoms_subset` to scatter data for some (or all)
atoms, in any order.
The *data* array needs to be ordered in groups of *count* values, sorted by
atom ID (e.g., if *name* is *x* and *count* = 3, then
*data* = [*x*\ (1,1), *x*\ (2,1), *x*\ (3,1), *x*\ (1,2), *x*\ (2,2),
*x*\ (3,2), *x*\ (1,3), :math:`\dots`]); *data* must be of length *natoms*
or 3\*\ *natoms*.
:p character(len=\*) name: quantity to be scattered (e.g., *x* or *charge*)
:p data: per-atom values packed in a one-dimensional array
containing the data to be scattered. This array must have length *natoms*
(e.g., for *type* or *charge*) or length *natoms*\ :math:`{}\times 3`
(e.g., for *x* or *f*). The array *data* must be rank 1 (i.e.,
``DIMENSION(:)``) and be of type ``INTEGER(c_int)`` (e.g., for *mask* or
*type*) or of type ``REAL(c_double)`` (e.g., for *x* or *charge* or *f*).
:ptype data: polymorphic,dimension(:)
:to: :cpp:func:`lammps_scatter_atoms` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1618: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: scatter_atoms_subset(name, ids, data)
This function calls :cpp:func:`lammps_scatter_atoms_subset` to scatter the
named atom-based entities in *data* to all processors.
.. versionadded:: 3Nov2022
This subroutine takes data stored in a one-dimensional array supplied by the
user and scatters them to a subset of atoms on all processors. The array
*data* contains data associated with atom IDs, but there is no requirement
that the IDs be consecutive, as they are provided in a separate array,
*ids*. Use :f:func:`scatter_atoms` to scatter data for all atoms, in order.
The *data* array needs to be organized in groups of 1 or 3 values,
depending on which quantity is being scattered, with the groups in the same
order as the array *ids*. For example, if you want *data* to be the array
[*x*\ (1,1), *x*\ (2,1), *x*\ (3,1), *x*\ (1,100), *x*\ (2,100),
*x*\ (3,100), *x*\ (1,57), *x*\ (2,57), *x*\ (3,57)], then *ids* would be
[1, 100, 57] and *name* would be *x*.
:p character(len=\*) name: quantity to be scattered (e.g., *x* or *charge*)
:p integer(c_int) ids [dimension(:)]: atom IDs corresponding to the atoms
being scattered
:p data: per-atom values packed into a
one-dimensional array containing the data to be scattered. This array must
have either the same length as *ids* (for *mask*, *type*, etc.) or three
times its length (for *x*, *f*, etc.); the array must be rank 1
and be of type ``INTEGER(c_int)`` (e.g., for *mask* or *type*) or of type
``REAL(c_double)`` (e.g., for *charge*, *x*, or *f*).
:ptype data: polymorphic,dimension(:)
:to: :cpp:func:`lammps_scatter_atoms_subset` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1652: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: gather_bonds(data)
Gather type and constituent atom information for all bonds.
.. versionadded:: 3Nov2022
This function copies the list of all bonds into an allocatable array.
The array will be filled with (bond type, bond atom 1, bond atom 2) for each
bond. The array is allocated to the right length (i.e., three times the
number of bonds). The array *data* must be of the same type as the LAMMPS
``tagint`` type, which is equivalent to either ``INTEGER(c_int)`` or
``INTEGER(c_int64_t)``, depending on whether ``-DLAMMPS_BIGBIG`` was used
when LAMMPS was built. If the supplied array does not match, an error will
result at run-time.
An example of how to use this routine is below:
.. code-block:: fortran
PROGRAM bonds
USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int
USE, INTRINSIC :: ISO_FORTRAN_ENV, ONLY : OUTPUT_UNIT
USE LIBLAMMPS
IMPLICIT NONE
INTEGER(c_int), DIMENSION(:), ALLOCATABLE, TARGET :: bonds
INTEGER(c_int), DIMENSION(:,:), POINTER :: bonds_array
TYPE(lammps) :: lmp
INTEGER :: i
! other commands to initialize LAMMPS, create bonds, etc.
CALL lmp%gather_bonds(bonds)
bonds_array(1:3, 1:SIZE(bonds)/3) => bonds
DO i = 1, SIZE(bonds)/3
WRITE(OUTPUT_UNIT,'(A,1X,I4,A,I4,1X,I4)') 'bond', bonds_array(1,i), &
'; type = ', bonds_array(2,i), bonds_array(3,i)
END DO
END PROGRAM bonds
:p data: array into which to copy the result. \*The ``KIND`` parameter is
either ``c_int`` or, if LAMMPS was compiled with ``-DLAMMPS_BIGBIG``,
kind ``c_int64_t``.
:ptype data: integer(kind=\*),allocatable
:to: :cpp:func:`lammps_gather_bonds` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1697: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: gather_angles(data)
Gather type and constituent atom information for all angles.
.. versionadded:: 8Feb2023
This function copies the list of all angles into an allocatable array.
The array will be filled with (angle type, angle atom 1, angle atom 2, angle atom 3)
for each angle. The array is allocated to the right length (i.e., four times the
number of angles). The array *data* must be of the same type as the LAMMPS
``tagint`` type, which is equivalent to either ``INTEGER(c_int)`` or
``INTEGER(c_int64_t)``, depending on whether ``-DLAMMPS_BIGBIG`` was used
when LAMMPS was built. If the supplied array does not match, an error will
result at run-time.
An example of how to use this routine is below:
.. code-block:: fortran
PROGRAM angles
USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int
USE, INTRINSIC :: ISO_FORTRAN_ENV, ONLY : OUTPUT_UNIT
USE LIBLAMMPS
IMPLICIT NONE
INTEGER(c_int), DIMENSION(:), ALLOCATABLE, TARGET :: angles
INTEGER(c_int), DIMENSION(:,:), POINTER :: angles_array
TYPE(lammps) :: lmp
INTEGER :: i
! other commands to initialize LAMMPS, create angles, etc.
CALL lmp%gather_angles(angles)
angles_array(1:4, 1:SIZE(angles)/4) => angles
DO i = 1, SIZE(angles)/4
WRITE(OUTPUT_UNIT,'(A,1X,I4,A,I4,1X,I4,1X,I4)') 'angle', angles_array(1,i), &
'; type = ', angles_array(2,i), angles_array(3,i), angles_array(4,i)
END DO
END PROGRAM angles
:p data: array into which to copy the result. \*The ``KIND`` parameter is
either ``c_int`` or, if LAMMPS was compiled with ``-DLAMMPS_BIGBIG``,
kind ``c_int64_t``.
:ptype data: integer(kind=\*),allocatable
:to: :cpp:func:`lammps_gather_angles` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1742: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: gather(self, name, count, data)
Gather the named per-atom, per-atom fix, per-atom compute, or fix
property/atom-based entities from all processes, in order by atom ID.
.. versionadded:: 22Dec2022
This subroutine gathers data from all processes and stores them in a
one-dimensional allocatable array. The array *data* will be
ordered by atom ID, which requires consecutive IDs (1 to *natoms*\ ). If you
need a similar array but for non-consecutive atom IDs, see
:cpp:func:`lammps_gather_concat`; for a similar array but for a subset of
atoms, see :cpp:func:`lammps_gather_subset`.
The *data* array will be ordered in groups of *count* values, sorted by atom
ID (e.g., if *name* is *x*, then *data* is [x(1,1), x(2,1), x(3,1), x(1,2),
x(2,2), x(3,2), x(1,3), :math:`\dots`]); *data* must be ``ALLOCATABLE`` and
will be allocated to length (*count*\ :math:`{}\times{}`\ *natoms*), as
queried by :f:func:`get_natoms`.
This function will return an error if fix or compute data are requested and
the fix or compute ID given does not have per-atom data. See the note about
re-interpreting the vector as a matrix at :f:subr:`gather_atoms`.
This function is not compatible with ``-DLAMMPS_BIGBIG``.
:p character(len=\*) name: desired quantity (e.g., "x" or "mask" for atom
properties, "f_id" for per-atom fix data, "c_id" for per-atom compute data,
"d_name" or "i_name" for fix property/atom vectors with *count* = 1,
"d2_name" or "i2_name" for fix property/atom vectors with
*count*\ :math:`{}> 1`)
:p integer(c_int) count: number of per-atom values (e.g., 1 for *type* or
*charge*, 3 for *x* or *f*); use *count* = 3 with *image* if you want the
image flags unpacked into (*x*,\ *y*,\ *z*) components.
:p real(c_double) data [dimension(:),allocatable]: array into which to store
the data. Array *must* have the ``ALLOCATABLE`` attribute and be of rank 1
(i.e., ``DIMENSION(:)``). If this array is already allocated, it will be
reallocated to fit the length of the incoming data.
:to: :cpp:func:`lammps_gather` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1784: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: gather_dihedrals(data)
Gather type and constituent atom information for all dihedrals.
.. versionadded:: 8Feb2023
This function copies the list of all dihedrals into an allocatable array.
The array will be filled with (dihedral type, dihedral atom 1, dihedral atom 2,
dihedral atom 3, dihedral atom 4) for each dihedral. The array is allocated to
the right length (i.e., five times the number of dihedrals).
The array *data* must be of the same type as the LAMMPS
``tagint`` type, which is equivalent to either ``INTEGER(c_int)`` or
``INTEGER(c_int64_t)``, depending on whether ``-DLAMMPS_BIGBIG`` was used
when LAMMPS was built. If the supplied array does not match, an error will
result at run-time.
An example of how to use this routine is below:
.. code-block:: fortran
PROGRAM dihedrals
USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int
USE, INTRINSIC :: ISO_FORTRAN_ENV, ONLY : OUTPUT_UNIT
USE LIBLAMMPS
IMPLICIT NONE
INTEGER(c_int), DIMENSION(:), ALLOCATABLE, TARGET :: dihedrals
INTEGER(c_int), DIMENSION(:,:), POINTER :: dihedrals_array
TYPE(lammps) :: lmp
INTEGER :: i
! other commands to initialize LAMMPS, create dihedrals, etc.
CALL lmp%gather_dihedrals(dihedrals)
dihedrals_array(1:5, 1:SIZE(dihedrals)/5) => dihedrals
DO i = 1, SIZE(dihedrals)/5
WRITE(OUTPUT_UNIT,'(A,1X,I4,A,I4,1X,I4,1X,I4,1X,I4)') 'dihedral', dihedrals_array(1,i), &
'; type = ', dihedrals_array(2,i), dihedrals_array(3,i), dihedrals_array(4,i), dihedrals_array(5,i)
END DO
END PROGRAM dihedrals
:p data: array into which to copy the result. \*The ``KIND`` parameter is
either ``c_int`` or, if LAMMPS was compiled with ``-DLAMMPS_BIGBIG``,
kind ``c_int64_t``.
:ptype data: integer(kind=\*),allocatable
:to: :cpp:func:`lammps_gather_dihedrals` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1830: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: gather_impropers(data)
Gather type and constituent atom information for all impropers.
.. versionadded:: 8Feb2023
This function copies the list of all impropers into an allocatable array.
The array will be filled with (improper type, improper atom 1, improper atom 2,
improper atom 3, improper atom 4) for each improper. The array is allocated to
the right length (i.e., five times the number of impropers).
The array *data* must be of the same type as the LAMMPS
``tagint`` type, which is equivalent to either ``INTEGER(c_int)`` or
``INTEGER(c_int64_t)``, depending on whether ``-DLAMMPS_BIGBIG`` was used
when LAMMPS was built. If the supplied array does not match, an error will
result at run-time.
An example of how to use this routine is below:
.. code-block:: fortran
PROGRAM impropers
USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int
USE, INTRINSIC :: ISO_FORTRAN_ENV, ONLY : OUTPUT_UNIT
USE LIBLAMMPS
IMPLICIT NONE
INTEGER(c_int), DIMENSION(:), ALLOCATABLE, TARGET :: impropers
INTEGER(c_int), DIMENSION(:,:), POINTER :: impropers_array
TYPE(lammps) :: lmp
INTEGER :: i
! other commands to initialize LAMMPS, create impropers, etc.
CALL lmp%gather_impropers(impropers)
impropers_array(1:5, 1:SIZE(impropers)/5) => impropers
DO i = 1, SIZE(impropers)/5
WRITE(OUTPUT_UNIT,'(A,1X,I4,A,I4,1X,I4,1X,I4,1X,I4)') 'improper', impropers_array(1,i), &
'; type = ', impropers_array(2,i), impropers_array(3,i), impropers_array(4,i), impropers_array(5,i)
END DO
END PROGRAM impropers
:p data: array into which to copy the result. \*The ``KIND`` parameter is
either ``c_int`` or, if LAMMPS was compiled with ``-DLAMMPS_BIGBIG``,
kind ``c_int64_t``.
:ptype data: integer(kind=\*),allocatable
:to: :cpp:func:`lammps_gather_impropers` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1876: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: gather_concat(self, name, count, data)
Gather the named per-atom, per-atom fix, per-atom compute, or fix
property/atom-based entities from all processes, unordered.
.. versionadded:: 22Dec2022
This subroutine gathers data for all atoms and stores them in a
one-dimensional allocatable array. The data will be a
concatenation of chunks from each processor's owned atoms, in whatever order
the atoms are in on each processor. This process has no requirement that the
atom IDs be consecutive. If you need the ID of each atom, you can do another
call to either :f:subr:`gather_atoms_concat` or :f:subr:`gather_concat` with
*name* set to ``id``. If you have consecutive IDs and want the data to be in
order, use :f:subr:`gather`; for a similar array but for a subset of
atoms, use :f:subr:`gather_subset`.
The *data* array will be in groups of *count* values, with *natoms* groups
total, but not in order by atom ID (e.g., if *name* is *x* and *count* is 3,
then *data* might be something like [x(1,11), x(2,11), x(3,11), x(1,3),
x(2,3), x(3,3), x(1,5), :math:`\dots`]); *data* must be ``ALLOCATABLE`` and
will be allocated to length (*count* :math:`\times` *natoms*), as queried by
:f:func:`get_natoms`.
This function is not compatible with ``-DLAMMPS_BIGBIG``.
:p character(len=\*) name: desired quantity (e.g., "x" or "mask" for atom
properties, "f_id" for per-atom fix data, "c_id" for per-atom compute data,
"d_name" or "i_name" for fix property/atom vectors with *count* = 1,
"d2_name" or "i2_name" for fix property/atom vectors with
*count*\ :math:`{}> 1`)
:p integer(c_int) count: number of per-atom values you expect per atom
(e.g., 1 for *type*, *mask*, or *charge*; 3 for *x*, *v*, or *f*). Use
*count* = 3 with *image* if you want a single image flag unpacked into
*x*/*y*/*z* components.
:p data: array into which to store
the data. Array *must* have the ``ALLOCATABLE`` attribute and be of rank 1
(i.e., ``DIMENSION(:)``). If this array is already allocated, it will be
reallocated to fit the length of the incoming data. It should have type
``INTEGER(c_int)`` if expecting integer data and ``REAL(c_double)`` if
expecting floating-point data.
:ptype data: polymorphic,dimension(:),allocatable
:to: :cpp:func:`lammps_gather_concat` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1922: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: gather_subset(name, count, ids, data)
Gather the named per-atom, per-atom fix, per-atom compute, or fix
property/atom-based entities from all processes for a subset of atoms.
.. versionadded:: 22Dec2022
This subroutine gathers data for the requested atom IDs and stores them in a
one-dimensional allocatable array. The data will be ordered by atom ID, but
there is no requirement that the IDs be consecutive. If you wish to return a
similar array for *all* the atoms, use :f:subr:`gather` or
:f:subr:`gather_concat`.
The *data* array will be in groups of *count* values, sorted by atom ID in
the same order as the array *ids* (e.g., if *name* is *x*, *count* = 3, and
*ids* is [100, 57, 210], then *data* might look like [*x*\ (1,100),
*x*\ (2,100), *x*\ (3,100), *x*\ (1,57), *x*\ (2,57), *x*\ (3,57),
*x*\ (1,210), :math:`\dots`]); *ids* must be provided by the user, and
*data* must have the ``ALLOCATABLE`` attribute and be of rank 1 (i.e.,
``DIMENSION(:)``). If *data* is already allocated, it will be reallocated to
fit the length of the incoming data.
This function is not compatible with ``-DLAMMPS_BIGBIG``.
:p character(len=\*) name: quantity to be scattered
:p integer(c_int) ids [dimension(:)]: atom IDs corresponding to the atoms
being scattered (e.g., "x" or "f" for atom properties, "f_id" for per-atom
fix data, "c_id" for per-atom compute data, "d_name" or "i_name" for fix
property/atom vectors with *count* = 1, "d2_name" or "i2_name" for fix
property/atom vectors with *count*\ :math:`{} > 1`)
:p integer(c_int) count: number of per-atom values you expect per atom
(e.g., 1 for *type*, *mask*, or *charge*; 3 for *x*, *v*, or *f*). Use
*count* = 3 with *image* if you want a single image flag unpacked into
*x*/*y*/*z* components.
:p data: per-atom values packed into a one-dimensional array containing the
data to be scattered. This array must have the ``ALLOCATABLE`` attribute
and will be allocated either to the same length as *ids*
(for *mask*, *type*, etc.) or to three times its length (for *x*, *f*,
etc.); the array must be rank 1 and be of type ``INTEGER(c_int)`` (e.g.,
for *mask* or *type*) or of type ``REAL(c_double)`` (e.g., for *charge*,
*x*, or *f*).
:ptype data: polymorphic,dimension(:),allocatable
:to: :cpp:func:`lammps_gather_subset` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1969: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: scatter(name, data)
This function calls :cpp:func:`lammps_scatter` to scatter the named
per-atom, per-atom fix, per-atom compute, or fix property/atom-based entity
in *data* to all processes.
.. versionadded:: 22Dec2022
This subroutine takes data stored in a one-dimensional array supplied by the
user and scatters them to all atoms on all processes. The data must be
ordered by atom ID, with the requirement that the IDs be consecutive. Use
:f:subr:`scatter_subset` to scatter data for some (or all) atoms, unordered.
The *data* array needs to be ordered in groups of *count* values, sorted by
atom ID (e.g., if *name* is *x* and *count* = 3, then *data* = [*x*\ (1,1),
*x*\ (2,1), *x*\ (3,1), *x*\ (1,2), *x*\ (2,2), *x*\ (3,2), *x*\ (1,3),
:math:`\dots`]); *data* must be of length (*count* :math:`\times` *natoms*).
This function is not compatible with ``-DLAMMPS_BIGBIG``.
:p character(len=*) name: desired quantity (e.g., "x" or "f" for atom
properties, "f_id" for per-atom fix data, "c_id" for per-atom compute data,
"d_name" or "i_name" for fix property/atom vectors with *count* = 1,
"d2_name" or "i2_name" for fix property/atom vectors with *count*\
:math:`{} > 1`)
:p data: per-atom values packed in a one-dimensional array; *data* should be
of type ``INTEGER(c_int)`` or ``REAL(c_double)``, depending on the type of
data being scattered, and be of rank 1 (i.e., ``DIMENSION(:)``).
:ptype data: polymorphic,dimension(:)
:to: :cpp:func:`lammps_scatter` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2002: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: scatter_subset(name, ids, data)
This function calls :cpp:func:`lammps_scatter_subset` to scatter the named
per-atom, per-atom fix, per-atom compute, or fix property/atom-based
entities in *data* from a subset of atoms to all processes.
.. versionadded:: 22Dec2022
This subroutine takes data stored in a one-dimensional array supplied by the
user and scatters them to a subset of atoms on all processes. The array
*data* contains data associated with atom IDs, but there is no requirement
that the IDs be consecutive, as they are provided in a separate array.
Use :f:subr:`scatter` to scatter data for all atoms, in order.
The *data* array needs to be organized in groups of *count* values, with the
groups in the same order as the array *ids*. For example, if you want *data*
to be the array [x(1,1), x(2,1), x(3,1), x(1,100), x(2,100), x(3,100),
x(1,57), x(2,57), x(3,57)], then *count* = 3 and *ids* = [1, 100, 57].
This function is not compatible with ``-DLAMMPS_BIGBIG``.
:p character(len=\*) name: desired quantity (e.g., "x" or "mask" for atom
properties, "f_id" for per-atom fix data, "c_id" for per-atom compute data,
"d_name" or "i_name" for fix property/atom vectors with *count* = 1,
"d2_name" or "i2_name" for fix property/atom vectors with
*count*\ :math:`{}> 1`)
:p integer(c_int) ids: list of atom IDs to scatter data for
:p polymorphic data [dimension(:)]: per-atom values packed in a
one-dimensional array of length *size(ids)* \* *count*.
:to: :cpp:func:`lammps_scatter_subset` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2035: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: create_atoms([id,] type, x, [v,] [image,] [bexpand])
This method calls :cpp:func:`lammps_create_atoms` to create additional atoms
from a given list of coordinates and a list of atom types. Additionally,
the atom IDs, velocities, and image flags may be provided.
.. versionadded:: 3Nov2022
:p integer(c_int) type [dimension(N)]: vector of :math:`N` atom types
(required/see note below)
:p real(c_double) x [dimension(3N)]: vector of :math:`3N\ x/y/z` positions
of the new atoms, arranged as :math:`[x_1,y_1,z_1,x_2,y_2,\dotsc]`
(required/see note below)
:o integer(kind=\*) id [dimension(N),optional]: vector of :math:`N` atom
IDs; if absent, LAMMPS will generate them for you. \*The ``KIND`` parameter
should be ``c_int`` unless LAMMPS was compiled with ``-DLAMMPS_BIGBIG``, in
which case it should be ``c_int64_t``.
:o real(c_double) v [dimension(3N),optional]: vector of :math:`3N`
*x*\ /*y*\ /*z* velocities of the new atoms, arranged as
:math:`[v_{1,x},v_{1,y},v_{1,z},v_{2,x}, \dotsc]`; if absent, they will be
set to zero
:o integer(kind=\*) image [dimension(N),optional]: vector of :math:`N` image
flags; if absent, they are set to zero. \*The ``KIND`` parameter should be
``c_int`` unless LAMMPS was compiled with ``-DLAMMPS_BIGBIG``, in which
case it should be ``c_int64_t``. See note below.
:o bexpand: if ``.TRUE.``, atoms outside of shrink-wrap boundaries
will be created, not dropped, and the box dimensions will be extended.
Default is ``.FALSE.``
:otype bexpand: logical,optional
:to: :cpp:func:`lammps_create_atoms`
.. note::
The *type* and *x* arguments are required, but they are declared
``OPTIONAL`` in the module because making them mandatory would require
*id* to be present as well. To have LAMMPS generate the ids for you,
use a call something like
.. code-block:: fortran
lmp%create_atoms(type=new_types, x=new_xs)
.. note::
When LAMMPS has been compiled with ``-DLAMMPS_BIGBIG``, it is not
possible to include the *image* parameter but omit the *id* parameter.
Either *id* must be present, or both *id* and *image* must be absent.
This is required because having all arguments be optional in both
generic functions creates an ambiguous interface. This limitation does
not exist if LAMMPS was not compiled with ``-DLAMMPS_BIGBIG``. [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2088: ERROR: Unknown directive type "f:function".
.. f:function:: find_pair_neighlist(style[, exact][, nsub][, reqid])
Find index of a neighbor list requested by a pair style.
.. versionadded:: 3Nov2022
This function determines which of the available neighbor lists for pair
styles matches the given conditions. It first matches the style name.
If *exact* is ``.TRUE.``, the name must match exactly; if ``.FALSE.``, a
regular expression or sub-string match is done. If the pair style is
*hybrid* or *hybrid/overlay*, the style is matched against the sub-styles
instead. If the same pair style is used multiple times as a sub-style, the
*nsub* argument must be :math:`> 0`; this argument represents the *n*\ th
instance of the sub-style (same as for the :doc:`pair_coeff <pair_coeff>`
command, for example). In that case, *nsub*\ :math:`{} = 0` will not
produce a match, and the function will return :math:`-1`.
The final condition to be checked is the request ID (\ *reqid*\ ). This
will usually be zero, but some pair styles request multiple neighbor
lists and set the request ID to a value greater than zero.
:p character(len=\*) style: String used to search for pair style instance.
:o exact: Flag to control whether style should match exactly or only a
regular expression/sub-string match is applied. Default: ``.TRUE.``.
:otype exact: logical,optional
:o integer(c_int) nsub [optional]: Match *nsub*\ th hybrid sub-style
instance of the same style. Default: 0.
:o integer(c_int) reqid [optional]: Request ID to identify the neighbor list
in case there are multiple requests from the same pair style instance.
Default: 0.
:to: :cpp:func:`lammps_find_pair_neighlist`
:r integer(c_int) index: Neighbor list index if found, otherwise
:math:`-1`. [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2124: ERROR: Unknown directive type "f:function".
.. f:function:: find_fix_neighlist(id[, reqid])
Find index of a neighbor list requested by a fix.
.. versionadded:: 3Nov2022
The neighbor list request from a fix is identified by the fix ID and the
request ID. The request ID is typically zero, but will be :math:`>0` for
fixes with multiple neighbor list requests.
:p character(len=\*) id: Identifier of fix instance
:o integer(c_int) reqid [optional]: request ID to identify the neighbor list
in cases in which there are multiple requests from the same fix.
Default: 0.
:to: :cpp:func:`lammps_find_fix_neighlist`
:r index: neighbor list index if found, otherwise :math:`-1`
:rtype index: integer(c_int) [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2144: ERROR: Unknown directive type "f:function".
.. f:function:: find_compute_neighlist(id[, reqid])
Find index of a neighbor list requested by a compute.
.. versionadded:: 3Nov2022
The neighbor list request from a compute is identified by the compute ID and
the request ID. The request ID is typically zero, but will be :math:`> 0`
in case a compute has multiple neighbor list requests.
:p character(len=\*) id: Identifier of compute instance.
:o integer(c_int) reqid [optional]: request ID to identify the neighbor list
in cases in which there are multiple requests from the same compute.
Default: 0.
:to: :cpp:func:`lammps_find_compute_neighlist`
:r index: neighbor list index if found, otherwise :math:`-1`.
:rtype index: integer(c_int) [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2164: ERROR: Unknown directive type "f:function".
.. f:function:: neighlist_num_elements(idx)
Return the number of entries in the neighbor list with the given index.
.. versionadded:: 3Nov2022
:p integer(c_int) idx: neighbor list index
:to: :cpp:func:`lammps_neighlist_num_elements`
:r inum: number of entries in neighbor list, or :math:`-1` if *idx* is not
a valid index.
:rtype inum: integer(c_int)
:to: :cpp:func:`lammps_neighlist_num_elements` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2179: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: neighlist_element_neighbors(idx, element, iatom, neighbors)
Return atom local index, number of neighbors, and array of neighbor local
atom indices of a neighbor list entry.
.. versionadded:: 3Nov2022
:p integer(c_int) idx: index of this neighbor list in the list of all
neighbor lists
:p integer(c_int) element: index of this neighbor list entry
:p integer(c_int) iatom: local atom index (i.e., in the range
[1,nlocal+nghost]; -1 if invalid or element value
:p integer(c_int) neighbors [dimension(:),pointer]: pointer to an array of
neighboring atom local indices
:to: :cpp:func:`lammps_neighlist_element_neighbors` [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2197: ERROR: Unknown directive type "f:function".
.. f:function:: version()
This method returns the numeric LAMMPS version like
:cpp:func:`lammps_version` does.
:to: :cpp:func:`lammps_version`
:r version: LAMMPS version
:rtype version: integer [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2208: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: get_os_info(buffer)
This function can be used to retrieve detailed information about the hosting
operating system and compiler/runtime environment.
.. versionadded:: 3Nov2022
A suitable buffer has to be provided. The assembled text will be truncated
so as not to overflow this buffer. The string is typically a few hundred
bytes long.
:p character(len=\*) buffer: string that will house the information.
:to: :cpp:func:`lammps_get_os_info` [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2225: ERROR: Unknown directive type "f:function".
.. f:function:: config_has_mpi_support()
This function is used to query whether LAMMPS was compiled with a real MPI
library or in serial.
.. versionadded:: 3Nov2022
:to: :cpp:func:`lammps_config_has_mpi_support`
:r has_mpi: ``.FALSE.`` when compiled with STUBS, ``.TRUE.`` if
complied with MPI.
:rtype has_mpi: logical [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2239: ERROR: Unknown directive type "f:function".
.. f:function:: config_has_gzip_support()
Check if the LAMMPS library supports reading or writing compressed
files via a pipe to gzip or similar compression programs.
.. versionadded:: 3Nov2022
Several LAMMPS commands (e.g., :doc:`read_data`, :doc:`write_data`,
:doc:`dump styles atom, custom, and xyz <dump>`) support reading and writing
compressed files via creating a pipe to the ``gzip`` program. This function
checks whether this feature was :ref:`enabled at compile time <gzip>`.
It does **not** check whether ``gzip`` or any other supported compression
programs themselves are installed and usable.
:to: :cpp:func:`lammps_config_has_gzip_support`
:r has_gzip:
:rtype has_gzip: logical [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2259: ERROR: Unknown directive type "f:function".
.. f:function:: config_has_png_support()
Check if the LAMMPS library supports writing PNG format images.
.. versionadded:: 3Nov2022
The LAMMPS :doc:`dump style image <dump_image>` supports writing multiple
image file formats. Most of them, however, need support from an external
library, and using that has to be :ref:`enabled at compile time <graphics>`.
This function checks whether support for the `PNG image file format
<https://en.wikipedia.org/wiki/Portable_Network_Graphics>`_ is available
in the current LAMMPS library.
:to: :cpp:func:`lammps_config_has_png_support`
:r has_png:
:rtype has_png: logical [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2278: ERROR: Unknown directive type "f:function".
.. f:function:: config_has_jpeg_support()
Check if the LAMMPS library supports writing JPEG format images.
.. versionadded:: 3Nov2022
The LAMMPS :doc:`dump style image <dump_image>` supports writing multiple
image file formats. Most of them, however, need support from an external
library, and using that has to be :ref:`enabled at compile time <graphics>`.
This function checks whether support for the `JPEG image file format
<https://jpeg.org/jpeg/>`_ is available in the current LAMMPS library.
:to: :cpp:func:`lammps_config_has_jpeg_support`
:r has_jpeg:
:rtype has_jpeg: logical [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2296: ERROR: Unknown directive type "f:function".
.. f:function:: config_has_ffmpeg_support()
Check if the LAMMPS library supports creating movie files via a pipe to
ffmpeg.
.. versionadded:: 3Nov2022
The LAMMPS :doc:`dump style movie <dump_image>` supports generating movies
from images on-the-fly via creating a pipe to the
`ffmpeg <https://ffmpeg.org/>`_ program.
This function checks whether this feature was
:ref:`enabled at compile time <graphics>`.
It does **not** check whether the ``ffmpeg`` itself is installed and usable.
:to: :cpp:func:`lammps_config_has_ffmpeg_support`
:r has_ffmpeg:
:rtype has_ffmpeg: logical [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2316: ERROR: Unknown directive type "f:function".
.. f:function:: config_has_exceptions()
Check whether LAMMPS errors will throw C++ exceptions.
.. versionadded:: 3Nov2022
When using the library interface, the library interface functions
will "catch" exceptions, and then the error status can be checked by
calling :f:func:`has_error`. The most recent error message can be
retrieved via :f:func:`get_last_error_message`. This allows to
restart a calculation or delete and recreate the LAMMPS instance when
a C++ exception occurs. One application of using exceptions this way
is the :ref:`lammps_shell`.
:to: :cpp:func:`lammps_config_has_exceptions`
:r has_exceptions:
:rtype has_exceptions: logical [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2336: ERROR: Unknown directive type "f:function".
.. f:function:: config_has_package(name)
Check whether a specific package has been included in LAMMPS
.. versionadded:: 3Nov2022
This function checks whether the LAMMPS library in use includes the specific
:doc:`LAMMPS package <Packages>` provided as argument.
:to: :cpp:func:`lammps_config_has_package`
:r has_package:
:rtype has_package: logical [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2351: ERROR: Unknown directive type "f:function".
.. f:function:: config_package_count()
Count the number of installed packages in the LAMMPS library.
.. versionadded:: 3Nov2022
This function counts how many :doc:`LAMMPS packages <Packages>` are
included in the LAMMPS library in use. It directly calls the C library
function :cpp:func:`lammps_config_package_count`.
:to: :cpp:func:`lammps_config_package_count`
:r integer(c_int) npackages: number of packages installed [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2366: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: config_package_name(idx, buffer)
Get the name of a package in the list of installed packages in the LAMMPS
library.
.. versionadded:: 3Nov2022
This subroutine copies the name of the package with the index *idx* into the
provided string *buffer*. If the name of the package exceeds the length of
the buffer, it will be truncated accordingly. If the index is out of range,
*buffer* is set to an empty string.
:p integer(c_int) idx: index of the package in the list of included packages
:math:`(0 \le idx < \text{package count})`
:p character(len=\*) buffer: string to hold the name of the package
:to: :cpp:func:`lammps_config_package_name` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2385: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: installed_packages(package[, length])
Obtain a list of the names of enabled packages in the LAMMPS shared library
and store it in *package*.
.. versionadded:: 3Nov2022
This function is analogous to the :py:meth:`installed_packages
<lammps.lammps.installed_packages>` function in the Python API.
The optional argument *length* sets the length of each string in the vector
*package* (default: 31).
:p character(len=:) package [dimension(:),allocatable]: list of packages;
*must* have the ``ALLOCATABLE`` attribute and be of rank 1
(i.e., ``DIMENSION(:)``) with allocatable length.
:o length: length of each string in the list. Default: 31.
:otype length: integer,optional
:to: :cpp:func:`lammps_config_package_count`
:to: :cpp:func:`lammps_config_package_name` [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2407: ERROR: Unknown directive type "f:function".
.. f:function:: config_accelerator(package, category, setting)
This function calls :cpp:func:`lammps_config_accelerator` to check the
availability of compile time settings of included
:doc:`accelerator packages <Speed_packages>` in LAMMPS.
.. versionadded:: 3Nov2022
Supported packages names are "GPU", "KOKKOS", "INTEL", and "OPENMP".
Supported categories are "api" with possible settings "cuda", "hip", "phi",
"pthreads", "opencl", "openmp", and "serial"; and "precision" with
possible settings "double", "mixed", and "single".
:p character(len=\*) package: string with the name of the accelerator
package
:p character(len=\*) category: string with the name of the setting
:p character(len=\*) setting: string with the name of the specific
setting
:to: :cpp:func:`lammps_config_accelerator`
:r available: ``.TRUE.`` if the combination of package, category,
and setting is available, otherwise ``.FALSE.``.
:rtype available: logical [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2432: ERROR: Unknown directive type "f:function".
.. f:function:: has_gpu_device()
Checks for the presence of a viable GPU package device.
.. versionadded:: 3Nov2022
This function calls :cpp:func:`lammps_has_gpu_device`, which checks at
runtime whether an accelerator device is present that can be used with the
:doc:`GPU package <Speed_gpu>`.
More detailed information about the available device or devices can
be obtained by calling the
:f:subr:`get_gpu_device_info` subroutine.
:to: :cpp:func:`lammps_has_gpu_device`
:r available: ``.TRUE.`` if a viable device is available, ``.FALSE.`` if not.
:rtype available: logical [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2452: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: get_gpu_device_info(buffer)
Get GPU package device information.
.. versionadded:: 3Nov2022
Calls :cpp:func:`lammps_get_gpu_device_info` to retrieve detailed
information about any accelerator devices that are viable for use with the
:doc:`GPU package <Speed_gpu>`. It will fill *buffer* with a string that is
equivalent to the output of the ``nvc_get_device`` or ``ocl_get_device`` or
``hip_get_device`` tools that are compiled alongside LAMMPS if the GPU
package is enabled.
A suitable-length Fortran string has to be provided. The assembled text will
be truncated so as not to overflow this buffer. This string can be several
kilobytes long if multiple devices are present.
:p character(len=\*) buffer: string into which to copy the information.
:to: :cpp:func:`lammps_get_gpu_device_info` [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2474: ERROR: Unknown directive type "f:function".
.. f:function:: has_style(category, name)
Check whether a specific style has been included in LAMMPS.
.. versionadded:: 3Nov2022
This function calls :cpp:func:`lammps_has_style` to check whether the
LAMMPS library in use includes the specific style *name* associated with a
specific *category* provided as arguments. Please see
:cpp:func:`lammps_has_style` for a list of valid categories.
:p character(len=\*) category: category of the style
:p character(len=\*) name: name of the style
:to: :cpp:func:`lammps_has_style`
:r has_style: ``.TRUE.`` if included, ``.FALSE.`` if not.
:rtype has_style: logical [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2493: ERROR: Unknown directive type "f:function".
.. f:function:: style_count(category)
Count the number of styles of *category* in the LAMMPS library.
.. versionadded:: 3Nov2022
This function counts how many styles in the provided *category* are
included in the LAMMPS library currently in use. Please see
:cpp:func:`lammps_has_style` for a list of valid categories.
:p character(len=\*) category: category of styles to count
:to: :cpp:func:`lammps_style_count`
:r integer(c_int) count: number of styles in *category* [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2509: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: style_name(category, idx, buffer)
Look up the name of a style by index in the list of styles of a given
category in the LAMMPS library.
.. versionadded:: 3Nov2022
This function calls :cpp:func:`lammps_style_name` and copies the name of
the *category* style with index *idx* into the provided string *buffer*.
The length of *buffer* must be long enough to contain the name of the
style; if it is too short, the name will be truncated accordingly.
If *idx* is out of range, *buffer* will be the empty string and a warning
will be issued.
:p character(len=\*) category: category of styles
:p integer(c_int) idx: index of the style in the list of *category*
styles :math:`(1 \leq idx \leq \text{style count})`
:p character(len\*) buffer: string buffer to copy the name of the style
into
:to: :cpp:func:`lammps_style_name` [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2532: ERROR: Unknown directive type "f:function".
.. f:function:: has_id(category, name)
This function checks if the current LAMMPS instance a *category* ID of
the given *name* exists. Valid categories are: *compute*\ , *dump*\ ,
*fix*\ , *group*\ , *molecule*\ , *region*\ , and *variable*\ .
.. versionadded:: 3Nov2022
:p character(len=\*) category: category of the ID
:p character(len=\*) name: name of the ID
:to: :cpp:func:`lammps_has_id`
:r has_id: ``.TRUE.`` if *category* style *name* exists, ``.FALSE.`` if not.
:rtype has_id: logical [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2548: ERROR: Unknown directive type "f:function".
.. f:function:: id_count(category)
This function counts how many IDs in the provided *category* are defined in
the current LAMMPS instance. Please see :f:func:`has_id` for a list of
valid categories.
.. versionadded:: 3Nov2022
:p character(len=\*) category: category of the ID
:to: :cpp:func:`lammps_id_count`
:r count: number of IDs in *category*
:rtype count: integer(c_int) [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2563: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: id_name(category, idx, buffer)
Look up the name of an ID by index in the list of IDs of a given category.
.. versionadded:: 3Nov2022
This function copies the name of the *category* ID with the index *idx* into
the provided string *buffer*\ . The length of the buffer must be long
enough to hold the string; if the name of the style exceeds the length of
the buffer, it will be truncated accordingly. If *buffer* is
``ALLOCATABLE``, it must be allocated *before* the function is called.
If *idx* is out of range, *buffer* is set to an empty string and a warning
is issued.
:p character(len=\*) category: category of IDs
:p integer(c_int) idx: index of the ID in the list of *category*
styles (:math:`0 \leq idx < count`)
:p character(len=\*) buffer: string into which to copy the name of the
style
:to: :cpp:func:`lammps_id_name` [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2586: ERROR: Unknown directive type "f:function".
.. f:function:: plugin_count()
This function counts the number of loaded plugins.
.. versionadded:: 3Nov2022
:to: :cpp:func:`lammps_plugin_count`
:r n: number of loaded plugins
:rtype n: integer(c_int) [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2598: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: plugin_name(idx, stylebuf, namebuf)
Look up the style and name of a plugin by its index in the list of plugins.
.. versionadded:: 3Nov2022
This function copies the name of the *style* plugin with the index *idx*
into the provided C-style string buffer. The length of the buffer must be
provided as *buf_size* argument. If the name of the style exceeds the
length of the buffer, it will be truncated accordingly. If the index is out
of range, both strings are set to the empty string and a warning is
printed.
:p integer(c_int) idx: index of the plugin in the list all or
*style* plugins
:p character(len=\*) stylebuf: string into which to copy the style of the
plugin
:p character(len=\*) namebuf: string into which to copy the style of the
plugin
:to: :cpp:func:`lammps_plugin_name` [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2621: ERROR: Unknown directive type "f:function".
.. f:function:: encode_image_flags(ix, iy, iz)
Encodes three integer image flags into a single imageint.
.. versionadded:: 3Nov2022
This function performs the bit-shift, addition, and bit-wise OR operations
necessary to combine the values of three integers representing the image
flags in the :math:`x`-, :math:`y`-, and :math:`z`-directions. Unless LAMMPS
is compiled with ``-DLAMMPS_BIGBIG``, those integers are limited to 10-bit
signed integers :math:`[-512,512)`. If ``-DLAMMPS_BIGBIG`` was used when
compiling, then the return value is of kind ``c_int64_t`` instead of
kind ``c_int``, and the valid range for the individual image flags becomes
:math:`[-1048576,1048575)` (i.e., the range of a 21-bit signed integer).
There is no check on whether the arguments conform to these requirements;
values out of range will simply be wrapped back into the interval.
:p integer(c_int) ix: image flag in :math:`x`-direction
:p integer(c_int) iy: image flag in :math:`y`-direction
:p integer(c_int) iz: image flag in :math:`z`-direction
:r integer(kind=\*) imageint: encoded image flag. \*The ``KIND`` parameter
is ``c_int`` unless LAMMPS was built with ``-DLAMMPS_BIGBIG``, in which
case it is ``c_int64_t``.
.. note::
The fact that the programmer does not know the ``KIND`` parameter of the
return value until compile time means that it is impossible to define an
interface that works for both sizes of ``imageint``. One side effect of
this is that you must assign the return value of this function to a
variable; it cannot be used as the argument to another function or as part
of an array constructor. For example,
.. code-block:: fortran
my_images = [lmp%encode_image_flags(0,0,0), lmp%encode_image_flags(1,0,0)]
will *not* work; instead, do something like
.. code-block:: fortran
my_images(1) = lmp%encode_image_flags(0,0,0)
my_images(2) = lmp%encode_image_flags(1,0,0) [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2667: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: decode_image_flags(image, flags)
This function does the reverse operation of :f:func:`encode_image_flags`:
it takes the image flag and performs the bit-shift and bit-masking
operations to decode it and stores the resulting three integers into the
array *flags*.
.. versionadded:: 3Nov2022
:p integer(kind=\*) image: encoded image flag. \*The ``KIND`` parameter is
either ``c_int`` or, if LAMMPS was compiled with ``-DLAMMPS_BIGBIG``,
``c_int64_t``. Kind compatibility is checked at run-time.
:p integer(c_int) flags [dimension(3)]: three-element vector where the
decoded image flags will be stored. [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2684: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: set_fix_external_callback(id, callback, caller)
Set the callback function for a :doc:`fix external <fix_external>` instance
with the given ID.
.. versionadded:: 22Dec2022
Fix :doc:`external <fix_external>` allows programs that are running LAMMPS
through its library interface to modify certain LAMMPS properties on
specific time steps, similar to the way other fixes do.
This subroutine sets the callback function for use with the "pf/callback"
mode. The function should have Fortran language bindings with the following
interface, which depends on how LAMMPS was compiled:
.. code-block:: fortran
ABSTRACT INTERFACE
SUBROUTINE external_callback(caller, timestep, ids, x, fexternal)
USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int, c_double, c_int64_t
CLASS(*), INTENT(INOUT) :: caller
INTEGER(c_bigint), INTENT(IN) :: timestep
INTEGER(c_tagint), DIMENSION(:), INTENT(IN) :: ids
REAL(c_double), DIMENSION(:,:), INTENT(IN) :: x
REAL(c_double), DIMENSION(:,:), INTENT(OUT) :: fexternal
END SUBROUTINE external_callback
END INTERFACE
where ``c_bigint`` is ``c_int`` if ``-DLAMMPS_SMALLSMALL`` was used and
``c_int64_t`` otherwise; and ``c_tagint`` is ``c_int64_t`` if
``-DLAMMPS_BIGBIG`` was used and ``c_int`` otherwise.
The argument *caller* to :f:subr:`set_fix_external_callback` is unlimited
polymorphic (i.e., it can be any Fortran object you want to pass to the
calling function) and will be available as the first argument to the
callback function. It can be your LAMMPS instance, which you might need if
the callback function needs access to the library interface.
The argument must be a scalar; to pass non-scalar data, wrap those data in
a derived type and pass an instance of the derived type to *caller*.
The array *ids* is an array of length *nlocal* (as accessed from the
:cpp:class:`Atom` class or through :f:func:`extract_global`). The arrays
*x* and *fexternal* are :math:`3 \times {}`\ *nlocal* arrays; these are
transposed from what they would look like in C (see note about array index
order at :f:func:`extract_atom`).
The callback mechanism is one of two ways that forces can be applied to a
simulation with the help of :doc:`fix external <fix_external>`. The
alternative is *array* mode, where one calls
:f:func:`fix_external_get_force`.
Please see the documentation for :doc:`fix external <fix_external>` for
more information about how to use the fix and couple it with external
programs.
:p character(len=*) id: ID of :doc:`fix external <fix_external>` instance
:p callback: subroutine :doc:`fix external <fix_external>` should call
:ptype callback: external
:p class(*) caller [optional]: object you wish to pass to the callback
procedure (must be a scalar; see note)
:to: :cpp:func:`lammps_set_fix_external_callback`
.. note::
The interface for your callback function must match types precisely
with the abstract interface block given above. **The compiler probably
will not be able to check this for you.** In particular, the first
argument ("caller") must be of type ``CLASS(*)`` or you will probably
get a segmentation fault or at least a misinterpretation of whatever is
in memory there. You can resolve the object using the ``SELECT TYPE``
construct. An example callback function (assuming LAMMPS was compiled
with ``-DLAMMPS_SMALLBIG``) that applies something akin to Hooke's Law
(with each atom having a different *k* value) is shown below.
.. code-block:: fortran
MODULE stuff
USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int, c_double, c_int64_t
USE, INTRINSIC :: ISO_FORTRAN_ENV, ONLY : error_unit
IMPLICIT NONE
TYPE shield
REAL(c_double), DIMENSION(:,:), ALLOCATABLE :: k
! assume k gets allocated to dimension(3,nlocal) at some point
! and assigned values
END TYPE shield
SUBROUTINE my_callback(caller, timestep, ids, x, fexternal)
CLASS(*), INTENT(INOUT) :: caller
INTEGER(c_int), INTENT(IN) :: timestep
INTEGER(c_int64_t), INTENT(IN) :: ids
REAL(c_double), INTENT(IN) :: x(:,:)
REAL(c_double), INTENT(OUT) :: fexternal(:,:)
SELECT TYPE (caller)
TYPE IS (shield)
fexternal = - caller%k * x
CLASS DEFAULT
WRITE(error_unit,*) 'UH OH...'
END SELECT
END SUBROUTINE my_callback
END MODULE stuff
! then, when assigning the callback function, do this:
PROGRAM example
USE LIBLAMMPS
USE stuff
TYPE(lammps) :: lmp
TYPE(shield) :: my_shield
lmp = lammps()
CALL lmp%command('fix ext all external pf/callback 1 1')
CALL lmp%set_fix_external_callback('ext', my_callback, my_shield)
END PROGRAM example [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2800: ERROR: Unknown directive type "f:function".
.. f:function:: fix_external_get_force(id)
Get pointer to the force array storage in a fix external instance with the
given ID.
.. versionadded:: 22Dec2022
Fix :doc:`external <fix_external>` allows programs that are running LAMMPS
through its library interfaces to add or modify certain LAMMPS properties on
specific time steps, similar to the way other fixes do.
This function provides access to the per-atom force storage in a fix
external instance with the given fix-ID to be added to the individual
atoms when using the "pf/array" mode. The *fexternal* array can be
accessed like other "native" per-atom arrays accessible via the
:f:func:`extract_atom` function. Please note that the array
stores the forces for *local* atoms for each MPI rank, in the order
determined by the neighbor list build. Because the underlying data
structures can change as well as the order of atom as they migrate between
MPI processes because of the domain decomposition parallelization, this
function should be always called immediately before the forces are going to
be set to get an up-to-date pointer. You can use, for example,
:f:func:`extract_setting` to obtain the number of local atoms `nlocal` and
then assume the dimensions of the returned force array as
``REAL(c_double) :: force(3,nlocal)``.
This function is an alternative to the callback mechanism in fix external
set up by :f:subr:`set_fix_external_callback`. The main difference is that
this mechanism can be used when forces are to be pre-computed and the
control alternates between LAMMPS and the external driver, while the
callback mechanism can call an external subroutine to compute the force when
the fix is triggered and needs them.
Please see the documentation for :doc:`fix external <fix_external>` for
more information about how to use the fix and how to couple it with an
external program.
:p character(len=*) id: ID of :doc:`fix external <fix_external>` instance
:to: :cpp:func:`lammps_fix_external_get_force`
:r fexternal: pointer to the per-atom force array allocated by the fix
:rtype fexternal: real(c_double),dimension(3,nlocal) [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2844: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: fix_external_set_energy_global(id, eng)
Set the global energy contribution for a :doc:`fix external <fix_external>`
instance with the given ID.
.. versionadded:: 22Dec2022
This is a companion function to :f:func:`set_fix_external_callback`
and :f:func:`fix_external_get_force` that also sets the contribution to the
global energy from the external program. The value of the *eng* argument
will be stored in the fix and applied on the current and all following
time steps until changed by another call to this function. The energy is in
energy units as determined by the current :doc:`units <units>` settings and
is the **total** energy of the contribution. Thus, when running in
parallel, all MPI processes have to call this function with the **same**
value, and this will be returned as a scalar property of the fix external
instance when accessed in LAMMPS input commands or from variables.
Please see the documentation for :doc:`fix external <fix_external>` for more
information about how to use the fix and how to couple it with an external
program.
:p character(len=*) id: fix ID of fix external instance
:p real(c_double) eng: total energy to be added to the global energy
:to: :cpp:func:`lammps_fix_external_set_energy_global` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2872: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: fix_external_set_virial_global(id, virial)
Set the global virial contribution for a fix external instance with the
given ID.
.. versionadded:: 22Dec2022
This is a companion function to :f:subr:`set_fix_external_callback`
and :f:func:`fix_external_get_force` to set the contribution to the global
virial from an external program.
The six values of the *virial* array will be stored in the fix and applied
on the current and all following time steps until changed by another call
to this function. The components of the virial need to be stored in the
following order: *xx*, *yy*, *zz*, *xy*, *xz*, *yz*. In LAMMPS, the virial
is stored internally as `stress*volume` in units of `pressure*volume` as
determined by the current :doc:`units <units>` settings and is the
**total** contribution. Thus, when running in parallel, all MPI processes
have to call this function with the **same** value, and this will then be
added by fix external.
Please see the documentation for :doc:`fix external <fix_external>` for
more information about how to use the fix and how to couple it with an
external code.
:p character(len=*) id: fix ID of fix external instance
:p real(c_double) virial [dimension(6)]: the six global stress tensor
components to be added to the global virial
:to: :cpp:func:`lammps_fix_external_set_virial_global` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2904: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: fix_external_set_energy_peratom(id, eng)
Set the per-atom energy contribution for a fix external instance with the
given ID.
.. versionadded:: 22Dec2022
This is a companion function to :f:subr:`set_fix_external_callback` to set
the per-atom energy contribution due to the fix from the external program as
part of the callback function. For this to work, the LAMMPS object must be
passed as part of the *caller* argument when registering the callback
function, or the callback function must otherwise have access to the
LAMMPS object, such as through a module-based pointer.
.. note::
This function is fully independent from
:f:subr:`fix_external_set_energy_global` and will **NOT** add any
contributions to the global energy tally and will **NOT** check whether
the sum of the contributions added here are consistent with the global
added energy.
Please see the documentation for :doc:`fix external <fix_external>` for
more information about how to use the fix and how to couple it with an
external code.
:p character(len=*) id: fix ID of the fix external instance
:p real(c_double) eng [dimension(:)]: array of length *nlocal* containing
the energy to add to the per-atom energy
:to: :cpp:func:`lammps_fix_external_set_energy_peratom` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2937: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: set_fix_external_set_virial_peratom(id, virial)
This is a companion function to :f:subr:`set_fix_external_callback` to set
the per-atom virial contribution due to the fix from the external program as
part of the callback function. For this to work, the LAMMPS object must be
passed as the *caller* argument when registering the callback function.
.. versionadded:: 22Dec2022
.. note::
This function is fully independent from
:f:subr:`fix_external_set_virial_global` and will **NOT** add any
contributions to the global virial tally and **NOT** check whether the
sum of the contributions added here are consistent with the global added
virial.
The order and units of the per-atom stress tensor elements are the same
as for the global virial. The type and dimensions of the per-atom virial
array must be ``REAL(c_double), DIMENSION(6,nlocal)``.
Please see the documentation for :doc:`fix external <fix_external>` for
more information about how to use the fix and how to couple it with an
external program.
:p character(len=*) id: fix ID of fix external instance
:p real(c_double) virial [dimension(:,:)]: an array of :math:`6 \times{}`\
*nlocal* components to be added to the per-atom virial
:to: :cpp:func:`lammps_set_virial_peratom` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2969: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: fix_external_set_vector_length(id, length)
Set the vector length for a global vector stored with fix external for
analysis.
.. versionadded:: 22Dec2022
This is a companion function to :f:subr:`set_fix_external_callback` and
:f:func:`fix_external_get_force` to set the length of a global vector of
properties that will be stored with the fix via
:f:subr:`fix_external_set_vector`.
This function needs to be called **before** a call to
:f:subr:`fix_external_set_vector` and **before** a run or minimize command.
When running in parallel, it must be called from **all** MPI
processes with the same length argument.
Please see the documentation for :doc:`fix external <fix_external>` for
more information about how to use the fix and how to couple it with an
external program.
:p character(len=*) id: fix ID of fix external instance
:p integer(c_int) length: length of the global vector to be stored with the
fix
:to: :cpp:func:`lammps_fix_external_set_vector_length` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2997: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: fix_external_set_vector(id, idx, val)
Store a global vector value for a fix external instance with the given ID.
.. versionadded:: 22Dec2022
This is a companion function to :f:subr:`set_fix_external_callback` and
:f:func:`fix_external_get_force` to set the values of a global vector of
properties that will be stored with the fix and can be accessed from
within LAMMPS input commands (e.g., fix ave/time or variables) when used
in a vector context.
This function needs to be called **after** a call to
:f:subr:`fix_external_set_vector_length` and **before** a run or minimize
command. When running in parallel, it must be called from **all** MPI
processes with the **same** *idx* and *val* parameters. The variable
*val* is assumed to be extensive.
.. note::
The index in the *idx* parameter is 1-based (i.e., the first element
is set with *idx*\ :math:`{} = 1`, and the last element of the vector
with *idx*\ :math:`{} = N`, where :math:`N` is the value of the *length*
parameter of the call to :f:subr:`fix_external_set_vector_length`).
Please see the documentation for :doc:`fix external <fix_external>` for
more information about how to use the fix and how to couple it with an
external code.
:p character(len=*) id: ID of fix external instance
:p integer(c_int) idx: 1-based index in global vector
:p integer(c_int) val: value to be stored in global vector at index *idx*
:to: :cpp:func:`lammps_fix_external_set_vector` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:3033: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: flush_buffers()
This function calls :cpp:func:`lammps_flush_buffers`, which flushes buffered
output to be written to screen and logfile. This can simplify capturing
output from LAMMPS library calls.
.. versionadded:: 3Nov2022
:to: :cpp:func:`lammps_flush_buffers` [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:3045: ERROR: Unknown directive type "f:function".
.. f:function:: is_running()
Check if LAMMPS is currently inside a run or minimization.
.. versionadded:: 3Nov2022
This function can be used from signal handlers or multi-threaded
applications to determine if the LAMMPS instance is currently active.
:to: :cpp:func:`lammps_is_running`
:r is_running: ``.FALSE.`` if idle or ``.TRUE.`` if active
:rtype is_running: logical [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:3060: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: force_timeout()
Force a timeout to stop an ongoing run cleanly.
.. versionadded:: 3Nov2022
This function can be used from signal handlers or multi-threaded
applications to terminate an ongoing run cleanly.
:to: :cpp:func:`lammps_force_timeout` [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:3073: ERROR: Unknown directive type "f:function".
.. f:function:: has_error()
Check if there is a (new) error message available.
.. versionadded:: 3Nov2022
This function can be used to query if an error inside of LAMMPS
has thrown a :ref:`C++ exception <exceptions>`.
:to: :cpp:func:`lammps_has_error`
:r has_error: ``.TRUE.`` if there is an error.
:rtype has_error: logical [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:3088: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: get_last_error_message(buffer[,status])
Copy the last error message into the provided buffer.
.. versionadded:: 3Nov2022
This function can be used to retrieve the error message that was set
in the event of an error inside of LAMMPS that resulted in a
:ref:`C++ exception <exceptions>`. A suitable buffer for a string has
to be provided. If the internally-stored error message is longer than the
string, it will be truncated accordingly. The optional argument *status*
indicates the kind of error: a "1" indicates an error that occurred on all
MPI ranks and is often recoverable, while a "2" indicates an abort that
would happen only in a single MPI rank and thus may not be recoverable, as
other MPI ranks may be waiting on the failing MPI rank(s) to send messages.
:p character(len=\*) buffer: string buffer to copy the error message into
:o integer(c_int) status [optional]: 1 when all ranks had the error,
2 on a single-rank error.
:to: :cpp:func:`lammps_get_last_error_message` [docutils]
looking for now-outdated files... none found
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checking consistency... /build/reproducible-path/lammps-20240207+dfsg/doc/src/angle_coeff.rst: document is referenced in multiple toctrees: ['commands_list', 'angles'], selecting: commands_list <- angle_coeff
/build/reproducible-path/lammps-20240207+dfsg/doc/src/angle_style.rst: document is referenced in multiple toctrees: ['commands_list', 'angles'], selecting: commands_list <- angle_style
/build/reproducible-path/lammps-20240207+dfsg/doc/src/angle_write.rst: document is referenced in multiple toctrees: ['commands_list', 'angles'], selecting: commands_list <- angle_write
/build/reproducible-path/lammps-20240207+dfsg/doc/src/bond_coeff.rst: document is referenced in multiple toctrees: ['bonds', 'commands_list'], selecting: commands_list <- bond_coeff
/build/reproducible-path/lammps-20240207+dfsg/doc/src/bond_style.rst: document is referenced in multiple toctrees: ['bonds', 'commands_list'], selecting: commands_list <- bond_style
/build/reproducible-path/lammps-20240207+dfsg/doc/src/bond_write.rst: document is referenced in multiple toctrees: ['bonds', 'commands_list'], selecting: commands_list <- bond_write
/build/reproducible-path/lammps-20240207+dfsg/doc/src/compute_modify.rst: document is referenced in multiple toctrees: ['computes', 'commands_list'], selecting: computes <- compute_modify
/build/reproducible-path/lammps-20240207+dfsg/doc/src/dihedral_coeff.rst: document is referenced in multiple toctrees: ['dihedrals', 'commands_list'], selecting: dihedrals <- dihedral_coeff
/build/reproducible-path/lammps-20240207+dfsg/doc/src/dihedral_style.rst: document is referenced in multiple toctrees: ['dihedrals', 'commands_list'], selecting: dihedrals <- dihedral_style
/build/reproducible-path/lammps-20240207+dfsg/doc/src/dihedral_write.rst: document is referenced in multiple toctrees: ['dihedrals', 'commands_list'], selecting: dihedrals <- dihedral_write
/build/reproducible-path/lammps-20240207+dfsg/doc/src/dump.rst: document is referenced in multiple toctrees: ['dumps', 'commands_list'], selecting: dumps <- dump
/build/reproducible-path/lammps-20240207+dfsg/doc/src/dump_adios.rst: document is referenced in multiple toctrees: ['dumps', 'commands_list'], selecting: dumps <- dump_adios
/build/reproducible-path/lammps-20240207+dfsg/doc/src/dump_cfg_uef.rst: document is referenced in multiple toctrees: ['dumps', 'commands_list'], selecting: dumps <- dump_cfg_uef
/build/reproducible-path/lammps-20240207+dfsg/doc/src/dump_h5md.rst: document is referenced in multiple toctrees: ['dumps', 'commands_list'], selecting: dumps <- dump_h5md
/build/reproducible-path/lammps-20240207+dfsg/doc/src/dump_image.rst: document is referenced in multiple toctrees: ['dumps', 'commands_list'], selecting: dumps <- dump_image
/build/reproducible-path/lammps-20240207+dfsg/doc/src/dump_modify.rst: document is referenced in multiple toctrees: ['dumps', 'commands_list'], selecting: dumps <- dump_modify
/build/reproducible-path/lammps-20240207+dfsg/doc/src/dump_molfile.rst: document is referenced in multiple toctrees: ['dumps', 'commands_list'], selecting: dumps <- dump_molfile
/build/reproducible-path/lammps-20240207+dfsg/doc/src/dump_netcdf.rst: document is referenced in multiple toctrees: ['dumps', 'commands_list'], selecting: dumps <- dump_netcdf
/build/reproducible-path/lammps-20240207+dfsg/doc/src/dump_vtk.rst: document is referenced in multiple toctrees: ['dumps', 'commands_list'], selecting: dumps <- dump_vtk
/build/reproducible-path/lammps-20240207+dfsg/doc/src/fix_modify.rst: document is referenced in multiple toctrees: ['fixes', 'commands_list'], selecting: fixes <- fix_modify
/build/reproducible-path/lammps-20240207+dfsg/doc/src/fix_modify_atc_commands.rst: document is referenced in multiple toctrees: ['Manual', 'fixes'], selecting: fixes <- fix_modify_atc_commands
/build/reproducible-path/lammps-20240207+dfsg/doc/src/improper_coeff.rst: document is referenced in multiple toctrees: ['impropers', 'commands_list'], selecting: impropers <- improper_coeff
/build/reproducible-path/lammps-20240207+dfsg/doc/src/improper_style.rst: document is referenced in multiple toctrees: ['impropers', 'commands_list'], selecting: impropers <- improper_style
/build/reproducible-path/lammps-20240207+dfsg/doc/src/pair_coeff.rst: document is referenced in multiple toctrees: ['pairs', 'commands_list'], selecting: pairs <- pair_coeff
/build/reproducible-path/lammps-20240207+dfsg/doc/src/pair_modify.rst: document is referenced in multiple toctrees: ['pairs', 'commands_list'], selecting: pairs <- pair_modify
/build/reproducible-path/lammps-20240207+dfsg/doc/src/pair_style.rst: document is referenced in multiple toctrees: ['pairs', 'commands_list'], selecting: pairs <- pair_style
/build/reproducible-path/lammps-20240207+dfsg/doc/src/pair_write.rst: document is referenced in multiple toctrees: ['pairs', 'commands_list'], selecting: pairs <- pair_write
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reading sources... [100%] Fortran
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.. f:module:: LIBLAMMPS [docutils]
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.. f:currentmodule:: None [docutils]
WARNING: unknown directive or role name: f:type
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:264: ERROR: Unknown directive type "f:type".
.. f:type:: lammps
Derived type that is the general class of the Fortran interface.
It holds a reference to the :cpp:class:`LAMMPS <LAMMPS_NS::LAMMPS>`
class instance to which any of the included calls are forwarded.
:f handle: reference to the LAMMPS class
:ftype handle: c_ptr
:f style: derived type to access lammps style constants
:ftype style: type(lammps_style)
:f type: derived type to access lammps type constants
:ftype type: type(lammps_type)
:f dtype: derived type to access lammps data type constants
:ftype dtype: type(lammps_dtype)
:f close: :f:subr:`close`
:ftype close: subroutine
:f subroutine error: :f:subr:`error`
:ftype error: subroutine
:f file: :f:subr:`file`
:ftype file: subroutine
:f command: :f:subr:`command`
:ftype command: subroutine
:f commands_list: :f:subr:`commands_list`
:ftype commands_list: subroutine
:f commands_string: :f:subr:`commands_string`
:ftype commands_string: subroutine
:f get_natoms: :f:func:`get_natoms`
:ftype get_natoms: function
:f get_thermo: :f:func:`get_thermo`
:ftype get_thermo: function
:f last_thermo: :f:func:`last_thermo`
:ftype last_thermo: function
:f extract_box: :f:subr:`extract_box`
:ftype extract_box: subroutine
:f reset_box: :f:subr:`reset_box`
:ftype reset_box: subroutine
:f memory_usage: :f:subr:`memory_usage`
:ftype memory_usage: subroutine
:f get_mpi_comm: :f:func:`get_mpi_comm`
:ftype get_mpi_comm: function
:f extract_setting: :f:func:`extract_setting`
:ftype extract_setting: function
:f extract_global: :f:func:`extract_global`
:ftype extract_global: function
:f extract_atom: :f:func:`extract_atom`
:ftype extract_atom: function
:f extract_compute: :f:func:`extract_compute`
:ftype extract_compute: function
:f extract_fix: :f:func:`extract_fix`
:ftype extract_fix: function
:f extract_variable: :f:func:`extract_variable`
:ftype extract_variable: function
:f set_variable: :f:subr:`set_variable`
:ftype set_variable: subroutine
:f set_string_variable: :f:subr:`set_set_string_variable`
:ftype set_string_variable: subroutine
:f set_internal_variable: :f:subr:`set_internal_variable`
:ftype set_internal_variable: subroutine
:f gather_atoms: :f:subr:`gather_atoms`
:ftype gather_atoms: subroutine
:f gather_atoms_concat: :f:subr:`gather_atoms_concat`
:ftype gather_atoms_concat: subroutine
:f gather_atoms_subset: :f:subr:`gather_atoms_subset`
:ftype gather_atoms_subset: subroutine
:f scatter_atoms: :f:subr:`scatter_atoms`
:ftype scatter_atoms: subroutine
:f scatter_atoms_subset: :f:subr:`scatter_atoms_subset`
:ftype scatter_atoms_subset: subroutine
:f gather_bonds: :f:subr:`gather_bonds`
:ftype gather_bonds: subroutine
:f gather_angles: :f:subr:`gather_angles`
:ftype gather_angles: subroutine
:f gather_dihedrals: :f:subr:`gather_dihedrals`
:ftype gather_dihedrals: subroutine
:f gather_impropers: :f:subr:`gather_impropers`
:ftype gather_impropers: subroutine
:f gather: :f:subr:`gather`
:ftype gather: subroutine
:f gather_concat: :f:subr:`gather_concat`
:ftype gather_concat: subroutine
:f gather_subset: :f:subr:`gather_subset`
:ftype gather_subset: subroutine
:f scatter: :f:subr:`scatter`
:ftype scatter: subroutine
:f scatter_subset: :f:subr:`scatter_subset`
:ftype scatter_subset: subroutine
:f create_atoms: :f:subr:`create_atoms`
:ftype create_atoms: subroutine
:f find_pair_neighlist: :f:func:`find_pair_neighlist`
:ftype find_pair_neighlist: function
:f find_fix_neighlist: :f:func:`find_fix_neighlist`
:ftype find_fix_neighlist: function
:f find_compute_neighlist: :f:func:`find_compute_neighlist`
:ftype find_compute_neighlist: function
:f neighlist_num_elements: :f:func:`neighlist_num_elements`
:ftype neighlist_num_elements: function
:f neighlist_element_neighbors: :f:subr:`neighlist_element_neighbors`
:ftype neighlist_element_neighbors: subroutine
:f version: :f:func:`version`
:ftype version: function
:f get_os_info: :f:subr:`get_os_info`
:ftype get_os_info: subroutine
:f config_has_mpi_support: :f:func:`config_has_mpi_support`
:ftype config_has_mpi_support: function
:f config_has_gzip_support: :f:func:`config_has_gzip_support`
:ftype config_has_gzip_support: function
:f config_has_png_support: :f:func:`config_has_png_support`
:ftype config_has_png_support: function
:f config_has_jpeg_support: :f:func:`config_has_jpeg_support`
:ftype config_has_jpeg_support: function
:f config_has_ffmpeg_support: :f:func:`config_has_ffmpeg_support`
:ftype config_has_ffmpeg_support: function
:f config_has_exceptions: :f:func:`config_has_exceptions`
:ftype config_has_exceptions: function
:f config_has_package: :f:func:`config_has_package`
:ftype config_has_package: function
:f config_package_count: :f:func:`config_package_count`
:ftype config_package_count: function
:f config_package_name: :f:func:`config_package_name`
:ftype config_package_name: function
:f installed_packages: :f:subr:`installed_packages`
:ftype installed_packages: subroutine
:f config_accelerator: :f:func:`config_accelerator`
:ftype config_accelerator: function
:f has_gpu_device: :f:func:`has_gpu_device`
:ftype has_gpu_device: function
:f get_gpu_device_info: :f:subr:`get_gpu_device_info`
:ftype get_gpu_device_info: subroutine
:f has_style: :f:func:`has_style`
:ftype has_style: function
:f style_count: :f:func:`style_count`
:ftype style_count: function
:f style_name: :f:func:`style_name`
:ftype style_name: function
:f has_id: :f:func:`has_id`
:ftype has_id: function
:f id_count: :f:func:`id_count`
:ftype id_count: function
:f id_name: :f:subr:`id_name`
:ftype id_name: subroutine
:f plugin_count: :f:func:`plugin_count`
:ftype plugin_count: function
:f plugin_name: :f:subr:`plugin_name`
:ftype plugin_count: subroutine
:f encode_image_flags: :f:func:`encode_image_flags`
:ftype encode_image_flags: function
:f decode_image_flags: :f:subr:`decode_image_flags`
:ftype decode_image_flags: subroutine
:f set_fix_external_callback: :f:subr:`set_fix_external_callback`
:ftype set_fix_external_callback: subroutine
:f fix_external_get_force: :f:func:`fix_external_get_force`
:ftype fix_external_get_force: function
:f fix_external_set_energy_global: :f:subr:`fix_external_set_energy_global`
:ftype fix_external_set_energy_global: subroutine
:f fix_external_set_virial_global: :f:subr:`fix_external_set_virial_global`
:ftype fix_external_set_virial_global: subroutine
:f fix_external_set_energy_peratom: :f:subr:`fix_external_set_energy_peratom`
:ftype fix_external_set_energy_peratom: subroutine
:f fix_external_set_virial_peratom: :f:subr:`fix_external_set_virial_peratom`
:ftype fix_external_set_virial_peratom: subroutine
:f fix_external_set_vector_length: :f:subr:`fix_external_set_vector_length`
:ftype fix_external_set_vector_length: subroutine
:f fix_external_set_vector: :f:subr:`fix_external_set_vector`
:ftype fix_external_set_vector: subroutine
:f flush_buffers: :f:subr:`flush_buffers`
:ftype flush_buffers: subroutine
:f is_running: :f:func:`is_running`
:ftype is_running: function
:f force_timeout: :f:subr:`force_timeout`
:ftype force_timeout: subroutine
:f has_error: :f:func:`has_error`
:ftype has_error: function
:f get_last_error_message: :f:subr:`get_last_error_message`
:ftype get_last_error_message: subroutine [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:441: ERROR: Unknown directive type "f:function".
.. f:function:: lammps([args][,comm])
This is the constructor for the Fortran class and will forward
the arguments to a call to either :cpp:func:`lammps_open_fortran`
or :cpp:func:`lammps_open_no_mpi`. If the LAMMPS library has been
compiled with MPI support, it will also initialize MPI, if it has
not already been initialized before.
The *args* argument with the list of command line parameters is
optional and so it the *comm* argument with the MPI communicator.
If *comm* is not provided, ``MPI_COMM_WORLD`` is assumed. For
more details please see the documentation of :cpp:func:`lammps_open`.
:o args: arguments as list of strings
:otype args: character(len=\*),dimension(:),optional
:o comm: MPI communicator
:otype comm: integer,optional
:to: :cpp:func:`lammps_open_fortran`
:to: :cpp:func:`lammps_open_no_mpi`
:r lammps: an instance of the :f:type:`lammps` derived type
.. note::
The :f:mod:`MPI_F08` module, which defines Fortran 2008 bindings for MPI,
is not directly supported by this interface due to the complexities of
supporting both the :f:mod:`MPI_F08` and :f:mod:`MPI` modules at the same
time. However, you should be able to use the ``MPI_VAL`` member of the
``MPI_comm`` derived type to access the integer value of the
communicator, such as in
.. code-block:: fortran
PROGRAM testmpi
USE LIBLAMMPS
USE MPI_F08
TYPE(lammps) :: lmp
lmp = lammps(comm=MPI_COMM_SELF%MPI_VAL)
END PROGRAM testmpi [docutils]
WARNING: unknown directive or role name: f:type
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:480: ERROR: Unknown directive type "f:type".
.. f:type:: lammps_style
This derived type is there to provide a convenient interface for the style
constants used with :f:func:`extract_compute`, :f:func:`extract_fix`, and
:f:func:`extract_variable`. Assuming your LAMMPS instance is called ``lmp``,
these constants will be ``lmp%style%global``, ``lmp%style%atom``,
and ``lmp%style%local``. These values are identical to the values described
in :cpp:enum:`_LMP_STYLE_CONST` for the C library interface.
:f integer(c_int) global: used to request global data
:f integer(c_int) atom: used to request per-atom data
:f integer(c_int) local: used to request local data [docutils]
WARNING: unknown directive or role name: f:type
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:493: ERROR: Unknown directive type "f:type".
.. f:type:: lammps_type
This derived type is there to provide a convenient interface for the type
constants used with :f:func:`extract_compute`, :f:func:`extract_fix`, and
:f:func:`extract_variable`. Assuming your LAMMPS instance is called ``lmp``,
these constants will be ``lmp%type%scalar``, ``lmp%type%vector``, and
``lmp%type%array``. These values are identical to the values described
in :cpp:enum:`_LMP_TYPE_CONST` for the C library interface.
:f integer(c_int) scalar: used to request scalars
:f integer(c_int) vector: used to request vectors
:f integer(c_int) array: used to request arrays (matrices) [docutils]
WARNING: unknown directive or role name: f:type
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:506: ERROR: Unknown interpreted text role "f:type". [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:509: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: close([finalize])
This method will close down the LAMMPS instance through calling
:cpp:func:`lammps_close`. If the *finalize* argument is present and
has a value of ``.TRUE.``, then this subroutine also calls
:cpp:func:`lammps_kokkos_finalize` and
:cpp:func:`lammps_mpi_finalize`.
:o finalize: shut down the MPI environment of the LAMMPS
library if ``.TRUE.``.
:otype finalize: logical,optional
:to: :cpp:func:`lammps_close`
:to: :cpp:func:`lammps_mpi_finalize`
:to: :cpp:func:`lammps_kokkos_finalize` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:526: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: error(error_type, error_text)
This method is a wrapper around the :cpp:func:`lammps_error` function and
will dispatch an error through the LAMMPS Error class.
.. versionadded:: 3Nov2022
:p error_type: constant to select which Error class function to call
:ptype error_type: integer(c_int)
:p character(len=\*) error_text: error message
:to: :cpp:func:`lammps_error` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:540: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: file(filename)
This method will call :cpp:func:`lammps_file` to have LAMMPS read
and process commands from a file.
:p character(len=\*) filename: name of file with LAMMPS commands
:to: :cpp:func:`lammps_file` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:550: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: command(cmd)
This method will call :cpp:func:`lammps_command` to have LAMMPS
execute a single command.
:p character(len=\*) cmd: single LAMMPS command
:to: :cpp:func:`lammps_command` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:560: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: commands_list(cmds)
This method will call :cpp:func:`lammps_commands_list` to have LAMMPS
execute a list of input lines.
:p character(len=\*) cmd [dimension(:)]: list of LAMMPS input lines
:to: :cpp:func:`lammps_commands_list` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:570: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: commands_string(str)
This method will call :cpp:func:`lammps_commands_string` to have LAMMPS
execute a block of commands from a string.
:p character(len=\*) str: LAMMPS input in string
:to: :cpp:func:`lammps_commands_string` [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:580: ERROR: Unknown directive type "f:function".
.. f:function:: get_natoms()
This function will call :cpp:func:`lammps_get_natoms` and return the number
of atoms in the system.
:to: :cpp:func:`lammps_get_natoms`
:r real(c_double) natoms: number of atoms
.. note::
If you would prefer to get the number of atoms in its native format
(i.e., as a 32- or 64-bit integer, depending on how LAMMPS was compiled),
this can be extracted with :f:func:`extract_global`. [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:596: ERROR: Unknown directive type "f:function".
.. f:function:: get_thermo(name)
This function will call :cpp:func:`lammps_get_thermo` and return the value
of the corresponding thermodynamic keyword.
.. versionadded:: 3Nov2022
:p character(len=\*) name: string with the name of the thermo keyword
:to: :cpp:func:`lammps_get_thermo`
:r value [real(c_double)]: value of the requested thermo property or `0.0_c_double` [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:609: ERROR: Unknown directive type "f:function".
.. f:function:: last_thermo(what, index)
This function will call :cpp:func:`lammps_last_thermo` and returns
either a string or a pointer to a cached copy of LAMMPS last thermodynamic
output, depending on the data requested through *what*. Note that *index*
uses 1-based indexing to access thermo output columns.
.. versionadded:: 15Jun2023
Note that this function actually does not return a value, but rather
associates the pointer on the left side of the assignment to point to
internal LAMMPS data (with the exception of string data, which are
copied and returned as ordinary Fortran strings). Pointers must be
of the correct data type to point to said data (typically
``INTEGER(c_int)``, ``INTEGER(c_int64_t)``, or ``REAL(c_double)``).
The pointer being associated with LAMMPS data is type-checked at
run-time via an overloaded assignment operator. The pointers
returned by this function point to temporary, read-only data that may
be overwritten at any time, so their target values need to be copied
to local storage if they are supposed to persist.
For example,
.. code-block:: fortran
PROGRAM thermo
USE LIBLAMMPS
USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_double, c_int64_t, c_int
TYPE(lammps) :: lmp
INTEGER(KIND=c_int64_t), POINTER :: ntimestep, bval
REAL(KIND=c_double), POINTER :: dval
INTEGER(KIND=c_int), POINTER :: nfield, typ, ival
INTEGER(KIND=c_int) :: i
CHARACTER(LEN=11) :: key
lmp = lammps()
CALL lmp%file('in.sysinit')
ntimestep = lmp%last_thermo('step', 0)
nfield = lmp%last_thermo('num', 0)
PRINT*, 'Last thermo output on step: ', ntimestep, ' Number of fields: ', nfield
DO i=1, nfield
key = lmp%last_thermo('keyword',i)
typ = lmp%last_thermo('type',i)
IF (typ == lmp%dtype%i32) THEN
ival = lmp%last_thermo('data',i)
PRINT*, key, ':', ival
ELSE IF (typ == lmp%dtype%i64) THEN
bval = lmp%last_thermo('data',i)
PRINT*, key, ':', bval
ELSE IF (typ == lmp%dtype%r64) THEN
dval = lmp%last_thermo('data',i)
PRINT*, key, ':', dval
END IF
END DO
CALL lmp%close(.TRUE.)
END PROGRAM thermo
would extract the last timestep where thermo output was done and the number
of columns it printed. Then it loops over the columns to print out column
header keywords and the corresponding data.
.. note::
If :f:func:`last_thermo` returns a string, the string must have a length
greater than or equal to the length of the string (not including the
terminal ``NULL`` character) that LAMMPS returns. If the variable's
length is too short, the string will be truncated. As usual in Fortran,
strings are padded with spaces at the end. If you use an allocatable
string, the string **must be allocated** prior to calling this function.
:p character(len=\*) what: string with the name of the thermo keyword
:p integer(c_int) index: 1-based column index
:to: :cpp:func:`lammps_last_thermo`
:r pointer [polymorphic]: pointer to LAMMPS data. The left-hand side of the
assignment should be either a string (if expecting string data) or a
C-compatible pointer (e.g., ``INTEGER(c_int), POINTER :: nlocal``) to the
extracted property.
.. warning::
Modifying the data in the location pointed to by the returned pointer
may lead to inconsistent internal data and thus may cause failures,
crashes, or bogus simulations. In general, it is much better
to use a LAMMPS input command that sets or changes these parameters.
Using an input command will take care of all side effects and necessary
updates of settings derived from such settings. [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:699: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: extract_box([boxlo][, boxhi][, xy][, yz][, xz][, pflags][, boxflag])
This subroutine will call :cpp:func:`lammps_extract_box`. All
parameters are optional, though obviously at least one should be
present. The parameters *pflags* and *boxflag* are stored in LAMMPS
as integers, but should be declared as ``LOGICAL`` variables when
calling from Fortran.
.. versionadded:: 3Nov2022
:o real(c_double) boxlo [dimension(3),optional]: vector in which to store
lower-bounds of simulation box
:o real(c_double) boxhi [dimension(3),optional]: vector in which to store
upper-bounds of simulation box
:o real(c_double) xy [optional]: variable in which to store *xy* tilt factor
:o real(c_double) yz [optional]: variable in which to store *yz* tilt factor
:o real(c_double) xz [optional]: variable in which to store *xz* tilt factor
:o pflags: vector in which to store
periodicity flags (``.TRUE.`` means periodic in that dimension)
:otype pflags: logical,dimension(3),optional
:o boxflag: variable in which to store boolean denoting
whether the box will change during a simulation
(``.TRUE.`` means box will change)
:otype boxflag: logical,optional
:to: :cpp:func:`lammps_extract_box` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:741: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: reset_box(boxlo, boxhi, xy, yz, xz)
This subroutine will call :cpp:func:`lammps_reset_box`. All parameters
are required.
.. versionadded:: 3Nov2022
:p real(c_double) boxlo [dimension(3)]: vector of three doubles containing
the lower box boundary
:p real(c_double) boxhi [dimension(3)]: vector of three doubles containing
the upper box boundary
:p real(c_double) xy: *x--y* tilt factor
:p real(c_double) yz: *y--z* tilt factor
:p real(c_double) xz: *x--z* tilt factor
:to: :cpp:func:`lammps_reset_box` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:759: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: memory_usage(meminfo)
This subroutine will call :cpp:func:`lammps_memory_usage` and store the
result in the three-element array *meminfo*.
.. versionadded:: 3Nov2022
:p real(c_double) meminfo [dimension(3)]: vector of three doubles in which
to store memory usage data
:to: :cpp:func:`lammps_memory_usage` [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:772: ERROR: Unknown directive type "f:function".
.. f:function:: get_mpi_comm()
This function returns a Fortran representation of the LAMMPS "world"
communicator.
.. versionadded:: 3Nov2022
:to: :cpp:func:`lammps_get_mpi_comm`
:r comm: Fortran integer equivalent to the MPI communicator LAMMPS is
using
:rtype comm: integer
.. note::
The C library interface currently returns type ``int`` instead of
type ``MPI_Fint``, which is the C type corresponding to Fortran
``INTEGER`` types of the default kind. On most compilers, these
are the same anyway, but this interface exchanges values this way
to avoid warning messages.
.. note::
The :f:mod:`MPI_F08` module, which defines Fortran 2008 bindings for MPI,
is not directly supported by this function. However, you should be
able to convert between the two using the `MPI_VAL` member of the
communicator. For example,
.. code-block:: fortran
USE MPI_F08
USE LIBLAMMPS
TYPE(lammps) :: lmp
TYPE(MPI_Comm) :: comm
! ... [commands to set up LAMMPS/etc.]
comm%MPI_VAL = lmp%get_mpi_comm()
should assign an :f:mod:`MPI_F08` communicator properly. [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:812: ERROR: Unknown directive type "f:function".
.. f:function:: extract_setting(keyword)
Query LAMMPS about global settings. See the documentation for the
:cpp:func:`lammps_extract_setting` function from the C library.
.. versionadded:: 3Nov2022
:p character(len=\*) keyword: string containing the name of the thermo keyword
:to: :cpp:func:`lammps_extract_setting`
:r integer(c_int) setting: value of the queried setting or :math:`-1` if
unknown [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:826: ERROR: Unknown directive type "f:function".
.. f:function:: extract_global(name)
This function calls :cpp:func:`lammps_extract_global` and returns
either a string or a pointer to internal global LAMMPS data,
depending on the data requested through *name*.
.. versionadded:: 3Nov2022
Note that this function actually does not return a value, but rather
associates the pointer on the left side of the assignment to point to
internal LAMMPS data (with the exception of string data, which are
copied and returned as ordinary Fortran strings). Pointers must be of
the correct data type to point to said data (typically
``INTEGER(c_int)``, ``INTEGER(c_int64_t)``, or ``REAL(c_double)``)
and have compatible kind and rank. The pointer being associated with
LAMMPS data is type-, kind-, and rank-checked at run-time via an
overloaded assignment operator. The pointers returned by this
function are generally persistent; therefore it is not necessary to
call the function again unless a :doc:`clear` command has been
issued, which wipes out and recreates the contents of the
:cpp:class:`LAMMPS <LAMMPS_NS::LAMMPS>` class.
For example,
.. code-block:: fortran
PROGRAM demo
USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int64_t, c_int, c_double
USE LIBLAMMPS
TYPE(lammps) :: lmp
INTEGER(c_int), POINTER :: nlocal => NULL()
INTEGER(c_int64_t), POINTER :: ntimestep => NULL()
REAL(c_double), POINTER :: dt => NULL()
CHARACTER(LEN=10) :: units
lmp = lammps()
! other commands
nlocal = lmp%extract_global('nlocal')
ntimestep = lmp%extract_global('ntimestep')
dt = lmp%extract_global('dt')
units = lmp%extract_global('units')
! more commands
lmp.close(.TRUE.)
END PROGRAM demo
would extract the number of atoms on this processor, the current time step,
the size of the current time step, and the units being used into the
variables *nlocal*, *ntimestep*, *dt*, and *units*, respectively.
.. note::
If :f:func:`extract_global` returns a string, the string must have
a length greater than or equal to the length of the string (not
including the terminal ``NULL`` character) that LAMMPS returns. If
the variable's length is too short, the string will be
truncated. As usual in Fortran, strings are padded with spaces at
the end. If you use an allocatable string, the string **must be
allocated** prior to calling this function, but you can
automatically reallocate it to the correct length after the
function returns, viz.,
.. code-block :: fortran
PROGRAM test
USE LIBLAMMPS
TYPE(lammps) :: lmp
CHARACTER(LEN=:), ALLOCATABLE :: str
lmp = lammps()
CALL lmp%command('units metal')
ALLOCATE(CHARACTER(LEN=80) :: str)
str = lmp%extract_global('units')
str = TRIM(str) ! re-allocates to length len_trim(str) here
PRINT*, LEN(str), LEN_TRIM(str)
END PROGRAM test
will print the number 5 (the length of the word "metal") twice.
:p character(len=\*) name: string with the name of the property to extract
:to: :cpp:func:`lammps_extract_global`
:r pointer [polymorphic]: pointer to LAMMPS data. The left-hand side of the
assignment should be either a string (if expecting string data) or a
C-compatible pointer (e.g., ``INTEGER(c_int), POINTER :: nlocal``) to the
extracted property. If expecting vector data, the pointer should have
dimension ":".
.. warning::
Modifying the data in the location pointed to by the returned pointer
may lead to inconsistent internal data and thus may cause failures,
crashes, or bogus simulations. In general, it is much better
to use a LAMMPS input command that sets or changes these parameters.
Using an input command will take care of all side effects and necessary
updates of settings derived from such settings. [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:921: ERROR: Unknown directive type "f:function".
.. f:function:: extract_atom(name)
This function calls :cpp:func:`lammps_extract_atom` and returns a pointer to
LAMMPS data tied to the :cpp:class:`Atom` class, depending on the data
requested through *name*.
.. versionadded:: 3Nov2022
Note that this function actually does not return a pointer, but rather
associates the pointer on the left side of the assignment to point
to internal LAMMPS data. Pointers must be of the correct type, kind, and
rank (e.g., ``INTEGER(c_int), DIMENSION(:)`` for "type", "mask", or "id";
``INTEGER(c_int64_t), DIMENSION(:)`` for "id" if LAMMPS was compiled
with the ``-DLAMMPS_BIGBIG`` flag; ``REAL(c_double), DIMENSION(:,:)`` for
"x", "v", or "f"; and so forth). The pointer being associated with LAMMPS
data is type-, kind-, and rank-checked at run-time.
:p character(len=\*) name: string with the name of the property to extract
:to: :cpp:func:`lammps_extract_atom`
:r pointer: pointer to LAMMPS data. The left-hand side of the
assignment should be a C-interoperable pointer of appropriate kind and rank
(e.g., ``INTEGER(c_int), POINTER :: mask(:)``) to the extracted
property. If expecting vector data, the pointer should have dimension ":";
if expecting matrix data, the pointer should have dimension ":,:".
:rtype pointer: polymorphic
.. warning::
Pointers returned by this function are generally not persistent, as
per-atom data may be redistributed, reallocated, and reordered at every
re-neighboring operation. It is advisable to re-bind pointers using
:f:func:`extract_atom` between runs.
.. admonition:: Array index order
Two-dimensional arrays returned from :f:func:`extract_atom` will be
**transposed** from equivalent arrays in C, and they will be indexed
from 1 instead of 0. For example, in C,
.. code-block:: c
void *lmp;
double **x;
/* more code to setup, etc. */
x = lammps_extract_atom(lmp, "x");
printf("%f\n", x[5][1]);
will print the *y*-coordinate of the sixth atom on this processor.
Conversely,
.. code-block:: fortran
TYPE(lammps) :: lmp
REAL(c_double), DIMENSION(:,:), POINTER :: x => NULL()
! more code to setup, etc.
x = lmp%extract_atom("x")
PRINT '(f0.6)', x(2,6)
will print the *y*-coordinate of the sixth atom on this processor
(note the transposition of the two indices). This is not a choice, but
rather a consequence of the different conventions adopted by the Fortran
and C standards decades ago: in C, the block of data
.. parsed-literal::
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
interpreted as a :math:`4\times4` matrix would be
.. math::
\begin{bmatrix}
1 & 2 & 3 & 4 \\
5 & 6 & 7 & 8 \\
9 & 10 & 11 & 12 \\
13 & 14 & 15 & 16
\end{bmatrix},
that is, in row-major order. In Fortran, the same block of data is
interpreted in column-major order, namely,
.. math::
\begin{bmatrix}
1 & 5 & 9 & 13 \\
2 & 6 & 10 & 14 \\
3 & 7 & 11 & 15 \\
4 & 8 & 12 & 16
\end{bmatrix}.
This difference in interpretation of the same block of data by the two
languages means, in effect, that matrices from C or C++ will be
transposed when interpreted in Fortran.
.. note::
If you would like the indices to start at 0 instead of 1 (which follows
typical notation in C and C++, but not Fortran), you can create another
pointer and associate it thus:
.. code-block:: fortran
REAL(c_double), DIMENSION(:,:), POINTER :: x, x0
x = lmp%extract_atom("x")
x0(0:,0:) => x
The above would cause the dimensions of *x* to be (1:3, 1:nmax)
and those of *x0* to be (0:2, 0:nmax\ :math:`-`\ 1). [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1032: ERROR: Unknown directive type "f:function".
.. f:function:: extract_compute(id, style, type)
This function calls :cpp:func:`lammps_extract_compute` and returns a pointer
to LAMMPS data tied to the :cpp:class:`Compute` class, specifically data
provided by the compute identified by *id*. Computes may provide global,
per-atom, or local data, and those data may be a scalar, a vector, or an
array. Since computes may provide multiple kinds of data, the user is
required to specify which set of data is to be returned through the
*style* and *type* variables.
.. versionadded:: 3Nov2022
Note that this function actually does not return a value, but rather
associates the pointer on the left side of the assignment to point to
internal LAMMPS data. Pointers must be of the correct data type to point to
said data (i.e., ``REAL(c_double)``) and have compatible rank. The pointer
being associated with LAMMPS data is type-, kind-, and rank-checked at
run-time via an overloaded assignment operator.
For example,
.. code-block:: fortran
TYPE(lammps) :: lmp
REAL(c_double), DIMENSION(:), POINTER :: COM
! code to setup, create atoms, etc.
CALL lmp%command('compute COM all com')
COM = lmp%extract_compute('COM', lmp%style%global, lmp%style%type)
will bind the variable *COM* to the center of mass of the atoms created in
your simulation. The vector in this case has length 3; the length (or, in
the case of array data, the number of rows and columns) is determined for
you based on data from the :cpp:class:`Compute` class.
.. admonition:: Array index order
Two-dimensional arrays returned from :f:func:`extract_compute` will be
**transposed** from equivalent arrays in C, and they will be indexed
from 1 instead of 0. See the note at :f:func:`extract_atom` for
further details.
The following combinations are possible (assuming ``lmp`` is the name of
your LAMMPS instance):
.. list-table::
:header-rows: 1
:widths: auto
* - Style
- Type
- Type to assign to
- Returned data
* - ``lmp%style%global``
- ``lmp%type%scalar``
- ``REAL(c_double), POINTER``
- Global scalar
* - ``lmp%style%global``
- ``lmp%type%vector``
- ``REAL(c_double), DIMENSION(:), POINTER``
- Global vector
* - ``lmp%style%global``
- ``lmp%type%array``
- ``REAL(c_double), DIMENSION(:,:), POINTER``
- Global array
* - ``lmp%style%atom``
- ``lmp%type%vector``
- ``REAL(c_double), DIMENSION(:), POINTER``
- Per-atom vector
* - ``lmp%style%atom``
- ``lmp%type%array``
- ``REAL(c_double), DIMENSION(:,:), POINTER``
- Per-atom array
* - ``lmp%style%local``
- ``lmp%type%vector``
- ``REAL(c_double), DIMENSION(:), POINTER``
- Local vector
* - ``lmp%style%local``
- ``lmp%type%array``
- ``REAL(c_double), DIMENSION(:,:), POINTER``
- Local array
:p character(len=\*) id: compute ID from which to extract data
:p integer(c_int) style: value indicating the style of data to extract
(global, per-atom, or local)
:p integer(c_int) type: value indicating the type of data to extract
(scalar, vector, or array)
:to: :cpp:func:`lammps_extract_compute`
:r pointer: pointer to LAMMPS data. The left-hand side of the assignment
should be a C-compatible pointer (e.g., ``REAL(c_double), POINTER :: x``)
to the extracted property. If expecting vector data, the pointer should
have dimension ":"; if expecting array (matrix) data, the pointer should
have dimension ":,:".
:rtype pointer: polymorphic
.. note::
If the compute's data are not already computed for the current step, the
compute will be invoked. LAMMPS cannot easily check at that time if it is
valid to invoke a compute, so it may fail with an error. The caller has
to check to avoid such an error.
.. warning::
The pointers returned by this function are generally not persistent,
since the computed data may be re-distributed, re-allocated, and
re-ordered at every invocation. It is advisable to re-invoke this
function before the data are accessed or make a copy if the data are to
be used after other LAMMPS commands have been issued. Do **not** modify
the data returned by this function. [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1144: ERROR: Unknown directive type "f:function".
.. f:function:: extract_fix(id, style, type[, nrow][, ncol])
This function calls :cpp:func:`lammps_extract_fix` and returns a pointer to
LAMMPS data tied to the :cpp:class:`Fix` class, specifically data provided
by the fix identified by *id*. Fixes may provide global, per-atom, or
local data, and those data may be a scalar, a vector, or an array. Since
many fixes provide multiple kinds of data, the user is required to specify
which set of data is to be returned through the *style* and *type*
variables.
.. versionadded:: 3Nov2022
Global data are calculated at the time they are requested and are only
available element-by-element. As such, the user is expected to provide
the *nrow* variable to specify which element of a global vector or the
*nrow* and *ncol* variables to specify which element of a global array the
user wishes LAMMPS to return. The *ncol* variable is optional for global
scalar or vector data, and both *nrow* and *ncol* are optional when a
global scalar is requested, as well as when per-atom or local data are
requested. The following combinations are possible (assuming ``lmp`` is the
name of your LAMMPS instance):
.. list-table::
:header-rows: 1
:widths: auto
* - Style
- Type
- nrow
- ncol
- Type to assign to
- Returned data
* - ``lmp%style%global``
- ``lmp%type%scalar``
- Ignored
- Ignored
- ``REAL(c_double)``
- Global scalar
* - ``lmp%style%global``
- ``lmp%type%vector``
- Required
- Ignored
- ``REAL(c_double)``
- Element of global vector
* - ``lmp%style%global``
- ``lmp%type%array``
- Required
- Required
- ``REAL(c_double)``
- Element of global array
* - ``lmp%style%atom``
- ``lmp%type%scalar``
-
-
-
- (not allowed)
* - ``lmp%style%atom``
- ``lmp%type%vector``
- Ignored
- Ignored
- ``REAL(c_double), DIMENSION(:), POINTER``
- Per-atom vector
* - ``lmp%style%atom``
- ``lmp%type%array``
- Ignored
- Ignored
- ``REAL(c_double), DIMENSION(:,:), POINTER``
- Per-atom array
* - ``lmp%style%local``
- ``lmp%type%scalar``
-
-
-
- (not allowed)
* - ``lmp%style%local``
- ``lmp%type%vector``
- Ignored
- Ignored
- ``REAL(c_double), DIMENSION(:), POINTER``
- Per-atom vector
* - ``lmp%style%local``
- ``lmp%type%array``
- Ignored
- Ignored
- ``REAL(c_double), DIMENSION(:,:), POINTER``
- Per-atom array
In the case of global data, this function returns a value of type
``REAL(c_double)``. For per-atom or local data, this function does not
return a value but instead associates the pointer on the left side of the
assignment to point to internal LAMMPS data. Pointers must be of the correct
type and kind to point to said data (i.e., ``REAL(c_double)``) and have
compatible rank. The pointer being associated with LAMMPS data is type-,
kind-, and rank-checked at run-time via an overloaded assignment operator.
For example,
.. code-block:: fortran
TYPE(lammps) :: lmp
REAL(c_double) :: dr, dx, dy, dz
! more code to set up, etc.
lmp%command('fix george all recenter 2 2 2')
! more code
dr = lmp%extract_fix("george", lmp%style%global, lmp%style%scalar)
dx = lmp%extract_fix("george", lmp%style%global, lmp%style%vector, 1)
dy = lmp%extract_fix("george", lmp%style%global, lmp%style%vector, 2)
dz = lmp%extract_fix("george", lmp%style%global, lmp%style%vector, 3)
will extract the global scalar calculated by
:doc:`fix recenter <fix_recenter>` into the variable *dr* and the
three elements of the global vector calculated by fix recenter into the
variables *dx*, *dy*, and *dz*, respectively.
If asked for per-atom or local data, :f:func:`extract_compute` returns a
pointer to actual LAMMPS data. The pointer so returned will have the
appropriate size to match the internal data, and will be
type/kind/rank-checked at the time of the assignment. For example,
.. code-block:: fortran
TYPE(lammps) :: lmp
REAL(c_double), DIMENSION(:), POINTER :: r
! more code to set up, etc.
lmp%command('fix state all store/state 0 x y z')
! more code
r = lmp%extract_fix('state', lmp%style%atom, lmp%type%array)
will bind the pointer *r* to internal LAMMPS data representing the per-atom
array computed by :doc:`fix store/state <fix_store_state>` when three
inputs are specified. Similarly,
.. code-block:: fortran
TYPE(lammps) :: lmp
REAL(c_double), DIMENSION(:), POINTER :: x
! more code to set up, etc.
lmp%command('fix state all store/state 0 x')
! more code
x = lmp%extract_fix('state', lmp%style%atom, lmp%type%vector)
will associate the pointer *x* with internal LAMMPS data corresponding to
the per-atom vector computed by :doc:`fix store/state <fix_store_state>`
when only one input is specified. Similar examples with ``lmp%style%atom``
replaced by ``lmp%style%local`` will extract local data from fixes that
define local vectors and/or arrays.
.. warning::
The pointers returned by this function for per-atom or local data are
generally not persistent, since the computed data may be redistributed,
reallocated, and reordered at every invocation of the fix. It is thus
advisable to re-invoke this function before the data are accessed or to
make a copy if the data are to be used after other LAMMPS commands have
been issued.
.. note::
LAMMPS cannot easily check if it is valid to access the data, so it
may fail with an error. The caller has to avoid such an error.
:p character(len=\*) id: string with the name of the fix from which
to extract data
:p integer(c_int) style: value indicating the style of data to extract
(global, per-atom, or local)
:p integer(c_int) type: value indicating the type of data to extract
(scalar, vector, or array)
:p integer(c_int) nrow: row index (used only for global vectors and arrays)
:p integer(c_int) ncol: column index (only used for global arrays)
:to: :cpp:func:`lammps_extract_fix`
:r data: LAMMPS data (for global data) or a pointer to LAMMPS data
(for per-atom or local data). The left-hand side of the assignment should
be of type ``REAL(c_double)`` and have appropriate rank (i.e.,
``DIMENSION(:)`` if expecting per-atom or local vector data and
``DIMENSION(:,:)`` if expecting per-atom or local array data). If expecting
local or per-atom data, it should have the ``POINTER`` attribute, but
if expecting global data, it should be an ordinary (non-``POINTER``)
variable.
:rtype data: polymorphic
.. admonition:: Array index order
Two-dimensional global, per-atom, or local array data from
:f:func:`extract_fix` will be **transposed** from equivalent arrays in
C (or in the ordinary LAMMPS interface accessed through thermodynamic
output), and they will be indexed from 1, not 0. This is true even for
global data, which are returned as scalars---this is done primarily so
the interface is consistent, as there is no choice but to transpose the
indices for per-atom or local array data. See the similar note under
:f:func:`extract_atom` for further details. [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1337: ERROR: Unknown directive type "f:function".
.. f:function:: extract_variable(name[,group])
This function calls :cpp:func:`lammps_extract_variable` and returns a
scalar, vector, or string containing the value of the variable identified by
*name*. When the variable is an *equal*-style variable (or one compatible
with that style such as *internal*), the variable is evaluated and the
corresponding value returned. When the variable is an *atom*-style variable,
the variable is evaluated and a vector of values is returned. With all
other variables, a string is returned. The *group* argument is only used
for *atom* style variables and is ignored otherwise. If *group* is absent
for *atom*-style variables, the group is assumed to be "all".
.. versionadded:: 3Nov2022
This function returns the values of the variables, not pointers to them.
Vectors pointing to *atom*-style variables should be of type
``REAL(c_double)``, be of rank 1 (i.e., ``DIMENSION(:)``), and have the
``ALLOCATABLE`` attribute.
.. note::
Unlike the C library interface, the Fortran interface does not require
you to deallocate memory when you are through; this is done for you,
behind the scenes.
For example,
.. code-block:: fortran
TYPE(lammps) :: lmp
REAL(c_double) :: area
! more code to set up, etc.
lmp%command('variable A equal lx*ly')
! more code
area = lmp%extract_variable("A")
will extract the *x*\ --*y* cross-sectional area of the simulation into the
variable *area*.
:p character(len=\*) name: variable name to evaluate
:o character(len=\*) group [optional]: group for which to extract per-atom
data (if absent, use "all")
:to: :cpp:func:`lammps_extract_variable`
:r data: scalar of type ``REAL(c_double)`` (for *equal*-style
variables and others that are *equal*-compatible), vector of type
``REAL(c_double), DIMENSION(:), ALLOCATABLE`` for *atom*- or *vector*-style
variables, or ``CHARACTER(LEN=*)`` for *string*-style and compatible
variables. Strings whose length is too short to hold the result will be
truncated. Allocatable strings must be allocated before this function is
called; see note at :f:func:`extract_global` regarding allocatable strings.
Allocatable arrays (for *atom*- and *vector*-style data) will be
reallocated on assignment.
:rtype data: polymorphic [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1401: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: set_variable(name, str)
Set the value of a string-style variable.
.. deprecated:: 7Feb2024
This function assigns a new value from the string *str* to the string-style
variable *name*\ . If *name* does not exist or is not a string-style
variable, an error is generated.
.. warning::
This subroutine is deprecated and :f:subr:`set_string_variable`
should be used instead.
:p character(len=*) name: name of the variable
:p character(len=*) str: new value to assign to the variable
:to: :cpp:func:`lammps_set_variable` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1422: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: set_string_variable(name, str)
Set the value of a string-style variable.
.. versionadded:: 7Feb2024
This function assigns a new value from the string *str* to the string-style
variable *name*\ . If *name* does not exist or is not a string-style
variable, an error is generated.
:p character(len=*) name: name of the variable
:p character(len=*) str: new value to assign to the variable
:to: :cpp:func:`lammps_set_string_variable` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1438: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: set_internal_variable(name, val)
Set the value of a internal-style variable.
.. versionadded:: 7Feb2024
This function assigns a new value from the floating-point number *val* to
the internal-style variable *name*\ . If *name* does not exist or is not
an internal-style variable, an error is generated.
:p character(len=*) name: name of the variable
:p read(c_double) val: new value to assign to the variable
:to: :cpp:func:`lammps_set_internal_variable` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1454: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: gather_atoms(name, count, data)
This function calls :cpp:func:`lammps_gather_atoms` to gather the named
atom-based entity for all atoms on all processors and return it in the
vector *data*. The vector *data* will be ordered by atom
ID, which requires consecutive atom IDs (1 to *natoms*).
.. versionadded:: 3Nov2022
If you need a similar array but have non-consecutive atom IDs, see
:f:func:`gather_atoms_concat`; for a similar array but for a subset
of atoms, see :f:func:`gather_atoms_subset`.
The *data* array will be ordered in groups of *count* values, sorted by atom
ID (e.g., if *name* is *x* and *count* = 3, then *data* = [*x*\ (1,1),
*x*\ (2,1), *x*\ (3,1), *x*\ (1,2), *x*\ (2,2), *x*\ (3,2), *x*\ (1,3),
:math:`\dots`]); *data* must be ``ALLOCATABLE`` and will be allocated to
length (*count* :math:`\times` *natoms*), as queried by
:f:func:`get_natoms`.
This function is not compatible with ``-DLAMMPS_BIGBIG``.
:p character(len=\*) name: desired quantity (e.g., *x* or *mask*)
:p integer(c_int) count: number of per-atom values you expect per atom
(e.g., 1 for *type*, *mask*, or *charge*; 3 for *x*, *v*, or *f*). Use
*count* = 3 with *image* if you want a single image flag unpacked into
*x*/*y*/*z* components.
:p data: array into which to store
the data. Array *must* have the ``ALLOCATABLE`` attribute and be of rank 1
(i.e., ``DIMENSION(:)``). If this array is already allocated, it will be
reallocated to fit the length of the incoming data. It should have type
``INTEGER(c_int)`` if expecting integer data and ``REAL(c_double)`` if
expecting floating-point data.
:ptype data: polymorphic,dimension(:),allocatable
:to: :cpp:func:`lammps_gather_atoms`
.. note::
If you want data from this function to be accessible as a two-dimensional
array, you can declare a rank-2 pointer and reassign it, like so:
.. code-block:: fortran
USE, INTRINSIC :: ISO_C_BINDING
USE LIBLAMMPS
TYPE(lammps) :: lmp
REAL(c_double), DIMENSION(:), ALLOCATABLE, TARGET :: xdata
REAL(c_double), DIMENSION(:,:), POINTER :: x
! other code to set up, etc.
CALL lmp%gather_atoms('x',3,xdata)
x(1:3,1:size(xdata)/3) => xdata
You can then access the *y*\ -component of atom 3 with ``x(2,3)``.
See the note about array index order at :f:func:`extract_atom`. [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1511: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: gather_atoms_concat(name, count, data)
This function calls :cpp:func:`lammps_gather_atoms_concat` to gather the
named atom-based entity for all atoms on all processors and return it in the
vector *data*.
.. versionadded:: 3Nov2022
The vector *data* will not be ordered by atom ID, and there is no
restriction on the IDs being consecutive. If you need the IDs, you can do
another :f:func:`gather_atoms_concat` with *name* set to ``id``.
If you need a similar array but have consecutive atom IDs, see
:f:func:`gather_atoms`; for a similar array but for a subset of atoms, see
:f:func:`gather_atoms_subset`.
This function is not compatible with ``-DLAMMPS_BIGBIG``.
:p character(len=\*) name: desired quantity (e.g., *x* or *mask*)
:p integer(c_int) count: number of per-atom values you expect per atom
(e.g., 1 for *type*, *mask*, or *charge*; 3 for *x*, *v*, or *f*). Use
*count* = 3 with *image* if you want a single image flag unpacked into
*x*/*y*/*z* components.
:p data: array into which to store
the data. Array *must* have the ``ALLOCATABLE`` attribute and be of rank 1
(i.e., ``DIMENSION(:)``). If this array is already allocated, it will be
reallocated to fit the length of the incoming data. It should have type
``INTEGER(c_int)`` if expecting integer data and ``REAL(c_double)`` if
expecting floating-point data.
:ptype data: polymorphic,dimension(:),allocatable
:to: :cpp:func:`lammps_gather_atoms_concat` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1545: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: gather_atoms_subset(name, count, ids, data)
This function calls :cpp:func:`lammps_gather_atoms_subset` to gather the
named atom-based entity for the atoms in the array *ids* from all processors
and return it in the vector *data*.
.. versionadded:: 3Nov2022
This subroutine gathers data for the requested atom IDs and stores them in a
one-dimensional allocatable array. The data will be ordered by
atom ID, but there is no requirement that the IDs be consecutive. If you
wish to return a similar array for *all* the atoms, use
:f:func:`gather_atoms` or :f:func:`gather_atoms_concat`.
The *data* array will be in groups of *count* values, sorted by atom ID
in the same order as the array *ids* (e.g., if *name* is *x*, *count* = 3,
and *ids* is [100, 57, 210], then *data* might look like
[*x*\ (1,100), *x*\ (2,100), *x*\ (3,100), *x*\ (1,57), *x*\ (2,57),
*x*\ (3,57), *x*\ (1,210), :math:`\dots`]; *ids* must be provided by the
user, and *data* must be of rank 1 (i.e., ``DIMENSION(:)``) and have the
``ALLOCATABLE`` attribute.
This function is not compatible with ``-DLAMMPS_BIGBIG``.
:p character(len=\*) name: desired quantity (e.g., *x* or *mask*)
:p integer(c_int) count: number of per-atom values you expect per atom
(e.g., 1 for *type*, *mask*, or *charge*; 3 for *x*, *v*, or *f*). Use
*count* = 3 with *image* if you want a single image flag unpacked into
*x*/*y*/*z* components.
:p integer(c_int) ids [dimension(:)]: atom IDs corresponding to the atoms
to be gathered
:p data: array into which to store
the data. Array *must* have the ``ALLOCATABLE`` attribute and be of rank 1
(i.e., ``DIMENSION(:)``). If this array is already allocated, it will be
reallocated to fit the length of the incoming data. It should have type
``INTEGER(c_int)`` if expecting integer data and ``REAL(c_double)`` if
expecting floating-point data.
:ptype data: polymorphic,dimension(:),allocatable
:to: :cpp:func:`lammps_gather_atoms_subset` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1587: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: scatter_atoms(name, data)
This function calls :cpp:func:`lammps_scatter_atoms` to scatter the named
atom-based entities in *data* to all processors.
.. versionadded:: 3Nov2022
This subroutine takes data stored in a one-dimensional array supplied by the
user and scatters them to all atoms on all processors. The data must be
ordered by atom ID, with the requirement that the IDs be consecutive.
Use :f:func:`scatter_atoms_subset` to scatter data for some (or all)
atoms, in any order.
The *data* array needs to be ordered in groups of *count* values, sorted by
atom ID (e.g., if *name* is *x* and *count* = 3, then
*data* = [*x*\ (1,1), *x*\ (2,1), *x*\ (3,1), *x*\ (1,2), *x*\ (2,2),
*x*\ (3,2), *x*\ (1,3), :math:`\dots`]); *data* must be of length *natoms*
or 3\*\ *natoms*.
:p character(len=\*) name: quantity to be scattered (e.g., *x* or *charge*)
:p data: per-atom values packed in a one-dimensional array
containing the data to be scattered. This array must have length *natoms*
(e.g., for *type* or *charge*) or length *natoms*\ :math:`{}\times 3`
(e.g., for *x* or *f*). The array *data* must be rank 1 (i.e.,
``DIMENSION(:)``) and be of type ``INTEGER(c_int)`` (e.g., for *mask* or
*type*) or of type ``REAL(c_double)`` (e.g., for *x* or *charge* or *f*).
:ptype data: polymorphic,dimension(:)
:to: :cpp:func:`lammps_scatter_atoms` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1618: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: scatter_atoms_subset(name, ids, data)
This function calls :cpp:func:`lammps_scatter_atoms_subset` to scatter the
named atom-based entities in *data* to all processors.
.. versionadded:: 3Nov2022
This subroutine takes data stored in a one-dimensional array supplied by the
user and scatters them to a subset of atoms on all processors. The array
*data* contains data associated with atom IDs, but there is no requirement
that the IDs be consecutive, as they are provided in a separate array,
*ids*. Use :f:func:`scatter_atoms` to scatter data for all atoms, in order.
The *data* array needs to be organized in groups of 1 or 3 values,
depending on which quantity is being scattered, with the groups in the same
order as the array *ids*. For example, if you want *data* to be the array
[*x*\ (1,1), *x*\ (2,1), *x*\ (3,1), *x*\ (1,100), *x*\ (2,100),
*x*\ (3,100), *x*\ (1,57), *x*\ (2,57), *x*\ (3,57)], then *ids* would be
[1, 100, 57] and *name* would be *x*.
:p character(len=\*) name: quantity to be scattered (e.g., *x* or *charge*)
:p integer(c_int) ids [dimension(:)]: atom IDs corresponding to the atoms
being scattered
:p data: per-atom values packed into a
one-dimensional array containing the data to be scattered. This array must
have either the same length as *ids* (for *mask*, *type*, etc.) or three
times its length (for *x*, *f*, etc.); the array must be rank 1
and be of type ``INTEGER(c_int)`` (e.g., for *mask* or *type*) or of type
``REAL(c_double)`` (e.g., for *charge*, *x*, or *f*).
:ptype data: polymorphic,dimension(:)
:to: :cpp:func:`lammps_scatter_atoms_subset` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1652: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: gather_bonds(data)
Gather type and constituent atom information for all bonds.
.. versionadded:: 3Nov2022
This function copies the list of all bonds into an allocatable array.
The array will be filled with (bond type, bond atom 1, bond atom 2) for each
bond. The array is allocated to the right length (i.e., three times the
number of bonds). The array *data* must be of the same type as the LAMMPS
``tagint`` type, which is equivalent to either ``INTEGER(c_int)`` or
``INTEGER(c_int64_t)``, depending on whether ``-DLAMMPS_BIGBIG`` was used
when LAMMPS was built. If the supplied array does not match, an error will
result at run-time.
An example of how to use this routine is below:
.. code-block:: fortran
PROGRAM bonds
USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int
USE, INTRINSIC :: ISO_FORTRAN_ENV, ONLY : OUTPUT_UNIT
USE LIBLAMMPS
IMPLICIT NONE
INTEGER(c_int), DIMENSION(:), ALLOCATABLE, TARGET :: bonds
INTEGER(c_int), DIMENSION(:,:), POINTER :: bonds_array
TYPE(lammps) :: lmp
INTEGER :: i
! other commands to initialize LAMMPS, create bonds, etc.
CALL lmp%gather_bonds(bonds)
bonds_array(1:3, 1:SIZE(bonds)/3) => bonds
DO i = 1, SIZE(bonds)/3
WRITE(OUTPUT_UNIT,'(A,1X,I4,A,I4,1X,I4)') 'bond', bonds_array(1,i), &
'; type = ', bonds_array(2,i), bonds_array(3,i)
END DO
END PROGRAM bonds
:p data: array into which to copy the result. \*The ``KIND`` parameter is
either ``c_int`` or, if LAMMPS was compiled with ``-DLAMMPS_BIGBIG``,
kind ``c_int64_t``.
:ptype data: integer(kind=\*),allocatable
:to: :cpp:func:`lammps_gather_bonds` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1697: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: gather_angles(data)
Gather type and constituent atom information for all angles.
.. versionadded:: 8Feb2023
This function copies the list of all angles into an allocatable array.
The array will be filled with (angle type, angle atom 1, angle atom 2, angle atom 3)
for each angle. The array is allocated to the right length (i.e., four times the
number of angles). The array *data* must be of the same type as the LAMMPS
``tagint`` type, which is equivalent to either ``INTEGER(c_int)`` or
``INTEGER(c_int64_t)``, depending on whether ``-DLAMMPS_BIGBIG`` was used
when LAMMPS was built. If the supplied array does not match, an error will
result at run-time.
An example of how to use this routine is below:
.. code-block:: fortran
PROGRAM angles
USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int
USE, INTRINSIC :: ISO_FORTRAN_ENV, ONLY : OUTPUT_UNIT
USE LIBLAMMPS
IMPLICIT NONE
INTEGER(c_int), DIMENSION(:), ALLOCATABLE, TARGET :: angles
INTEGER(c_int), DIMENSION(:,:), POINTER :: angles_array
TYPE(lammps) :: lmp
INTEGER :: i
! other commands to initialize LAMMPS, create angles, etc.
CALL lmp%gather_angles(angles)
angles_array(1:4, 1:SIZE(angles)/4) => angles
DO i = 1, SIZE(angles)/4
WRITE(OUTPUT_UNIT,'(A,1X,I4,A,I4,1X,I4,1X,I4)') 'angle', angles_array(1,i), &
'; type = ', angles_array(2,i), angles_array(3,i), angles_array(4,i)
END DO
END PROGRAM angles
:p data: array into which to copy the result. \*The ``KIND`` parameter is
either ``c_int`` or, if LAMMPS was compiled with ``-DLAMMPS_BIGBIG``,
kind ``c_int64_t``.
:ptype data: integer(kind=\*),allocatable
:to: :cpp:func:`lammps_gather_angles` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1742: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: gather(self, name, count, data)
Gather the named per-atom, per-atom fix, per-atom compute, or fix
property/atom-based entities from all processes, in order by atom ID.
.. versionadded:: 22Dec2022
This subroutine gathers data from all processes and stores them in a
one-dimensional allocatable array. The array *data* will be
ordered by atom ID, which requires consecutive IDs (1 to *natoms*\ ). If you
need a similar array but for non-consecutive atom IDs, see
:cpp:func:`lammps_gather_concat`; for a similar array but for a subset of
atoms, see :cpp:func:`lammps_gather_subset`.
The *data* array will be ordered in groups of *count* values, sorted by atom
ID (e.g., if *name* is *x*, then *data* is [x(1,1), x(2,1), x(3,1), x(1,2),
x(2,2), x(3,2), x(1,3), :math:`\dots`]); *data* must be ``ALLOCATABLE`` and
will be allocated to length (*count*\ :math:`{}\times{}`\ *natoms*), as
queried by :f:func:`get_natoms`.
This function will return an error if fix or compute data are requested and
the fix or compute ID given does not have per-atom data. See the note about
re-interpreting the vector as a matrix at :f:subr:`gather_atoms`.
This function is not compatible with ``-DLAMMPS_BIGBIG``.
:p character(len=\*) name: desired quantity (e.g., "x" or "mask" for atom
properties, "f_id" for per-atom fix data, "c_id" for per-atom compute data,
"d_name" or "i_name" for fix property/atom vectors with *count* = 1,
"d2_name" or "i2_name" for fix property/atom vectors with
*count*\ :math:`{}> 1`)
:p integer(c_int) count: number of per-atom values (e.g., 1 for *type* or
*charge*, 3 for *x* or *f*); use *count* = 3 with *image* if you want the
image flags unpacked into (*x*,\ *y*,\ *z*) components.
:p real(c_double) data [dimension(:),allocatable]: array into which to store
the data. Array *must* have the ``ALLOCATABLE`` attribute and be of rank 1
(i.e., ``DIMENSION(:)``). If this array is already allocated, it will be
reallocated to fit the length of the incoming data.
:to: :cpp:func:`lammps_gather` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1784: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: gather_dihedrals(data)
Gather type and constituent atom information for all dihedrals.
.. versionadded:: 8Feb2023
This function copies the list of all dihedrals into an allocatable array.
The array will be filled with (dihedral type, dihedral atom 1, dihedral atom 2,
dihedral atom 3, dihedral atom 4) for each dihedral. The array is allocated to
the right length (i.e., five times the number of dihedrals).
The array *data* must be of the same type as the LAMMPS
``tagint`` type, which is equivalent to either ``INTEGER(c_int)`` or
``INTEGER(c_int64_t)``, depending on whether ``-DLAMMPS_BIGBIG`` was used
when LAMMPS was built. If the supplied array does not match, an error will
result at run-time.
An example of how to use this routine is below:
.. code-block:: fortran
PROGRAM dihedrals
USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int
USE, INTRINSIC :: ISO_FORTRAN_ENV, ONLY : OUTPUT_UNIT
USE LIBLAMMPS
IMPLICIT NONE
INTEGER(c_int), DIMENSION(:), ALLOCATABLE, TARGET :: dihedrals
INTEGER(c_int), DIMENSION(:,:), POINTER :: dihedrals_array
TYPE(lammps) :: lmp
INTEGER :: i
! other commands to initialize LAMMPS, create dihedrals, etc.
CALL lmp%gather_dihedrals(dihedrals)
dihedrals_array(1:5, 1:SIZE(dihedrals)/5) => dihedrals
DO i = 1, SIZE(dihedrals)/5
WRITE(OUTPUT_UNIT,'(A,1X,I4,A,I4,1X,I4,1X,I4,1X,I4)') 'dihedral', dihedrals_array(1,i), &
'; type = ', dihedrals_array(2,i), dihedrals_array(3,i), dihedrals_array(4,i), dihedrals_array(5,i)
END DO
END PROGRAM dihedrals
:p data: array into which to copy the result. \*The ``KIND`` parameter is
either ``c_int`` or, if LAMMPS was compiled with ``-DLAMMPS_BIGBIG``,
kind ``c_int64_t``.
:ptype data: integer(kind=\*),allocatable
:to: :cpp:func:`lammps_gather_dihedrals` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1830: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: gather_impropers(data)
Gather type and constituent atom information for all impropers.
.. versionadded:: 8Feb2023
This function copies the list of all impropers into an allocatable array.
The array will be filled with (improper type, improper atom 1, improper atom 2,
improper atom 3, improper atom 4) for each improper. The array is allocated to
the right length (i.e., five times the number of impropers).
The array *data* must be of the same type as the LAMMPS
``tagint`` type, which is equivalent to either ``INTEGER(c_int)`` or
``INTEGER(c_int64_t)``, depending on whether ``-DLAMMPS_BIGBIG`` was used
when LAMMPS was built. If the supplied array does not match, an error will
result at run-time.
An example of how to use this routine is below:
.. code-block:: fortran
PROGRAM impropers
USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int
USE, INTRINSIC :: ISO_FORTRAN_ENV, ONLY : OUTPUT_UNIT
USE LIBLAMMPS
IMPLICIT NONE
INTEGER(c_int), DIMENSION(:), ALLOCATABLE, TARGET :: impropers
INTEGER(c_int), DIMENSION(:,:), POINTER :: impropers_array
TYPE(lammps) :: lmp
INTEGER :: i
! other commands to initialize LAMMPS, create impropers, etc.
CALL lmp%gather_impropers(impropers)
impropers_array(1:5, 1:SIZE(impropers)/5) => impropers
DO i = 1, SIZE(impropers)/5
WRITE(OUTPUT_UNIT,'(A,1X,I4,A,I4,1X,I4,1X,I4,1X,I4)') 'improper', impropers_array(1,i), &
'; type = ', impropers_array(2,i), impropers_array(3,i), impropers_array(4,i), impropers_array(5,i)
END DO
END PROGRAM impropers
:p data: array into which to copy the result. \*The ``KIND`` parameter is
either ``c_int`` or, if LAMMPS was compiled with ``-DLAMMPS_BIGBIG``,
kind ``c_int64_t``.
:ptype data: integer(kind=\*),allocatable
:to: :cpp:func:`lammps_gather_impropers` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1876: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: gather_concat(self, name, count, data)
Gather the named per-atom, per-atom fix, per-atom compute, or fix
property/atom-based entities from all processes, unordered.
.. versionadded:: 22Dec2022
This subroutine gathers data for all atoms and stores them in a
one-dimensional allocatable array. The data will be a
concatenation of chunks from each processor's owned atoms, in whatever order
the atoms are in on each processor. This process has no requirement that the
atom IDs be consecutive. If you need the ID of each atom, you can do another
call to either :f:subr:`gather_atoms_concat` or :f:subr:`gather_concat` with
*name* set to ``id``. If you have consecutive IDs and want the data to be in
order, use :f:subr:`gather`; for a similar array but for a subset of
atoms, use :f:subr:`gather_subset`.
The *data* array will be in groups of *count* values, with *natoms* groups
total, but not in order by atom ID (e.g., if *name* is *x* and *count* is 3,
then *data* might be something like [x(1,11), x(2,11), x(3,11), x(1,3),
x(2,3), x(3,3), x(1,5), :math:`\dots`]); *data* must be ``ALLOCATABLE`` and
will be allocated to length (*count* :math:`\times` *natoms*), as queried by
:f:func:`get_natoms`.
This function is not compatible with ``-DLAMMPS_BIGBIG``.
:p character(len=\*) name: desired quantity (e.g., "x" or "mask" for atom
properties, "f_id" for per-atom fix data, "c_id" for per-atom compute data,
"d_name" or "i_name" for fix property/atom vectors with *count* = 1,
"d2_name" or "i2_name" for fix property/atom vectors with
*count*\ :math:`{}> 1`)
:p integer(c_int) count: number of per-atom values you expect per atom
(e.g., 1 for *type*, *mask*, or *charge*; 3 for *x*, *v*, or *f*). Use
*count* = 3 with *image* if you want a single image flag unpacked into
*x*/*y*/*z* components.
:p data: array into which to store
the data. Array *must* have the ``ALLOCATABLE`` attribute and be of rank 1
(i.e., ``DIMENSION(:)``). If this array is already allocated, it will be
reallocated to fit the length of the incoming data. It should have type
``INTEGER(c_int)`` if expecting integer data and ``REAL(c_double)`` if
expecting floating-point data.
:ptype data: polymorphic,dimension(:),allocatable
:to: :cpp:func:`lammps_gather_concat` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1922: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: gather_subset(name, count, ids, data)
Gather the named per-atom, per-atom fix, per-atom compute, or fix
property/atom-based entities from all processes for a subset of atoms.
.. versionadded:: 22Dec2022
This subroutine gathers data for the requested atom IDs and stores them in a
one-dimensional allocatable array. The data will be ordered by atom ID, but
there is no requirement that the IDs be consecutive. If you wish to return a
similar array for *all* the atoms, use :f:subr:`gather` or
:f:subr:`gather_concat`.
The *data* array will be in groups of *count* values, sorted by atom ID in
the same order as the array *ids* (e.g., if *name* is *x*, *count* = 3, and
*ids* is [100, 57, 210], then *data* might look like [*x*\ (1,100),
*x*\ (2,100), *x*\ (3,100), *x*\ (1,57), *x*\ (2,57), *x*\ (3,57),
*x*\ (1,210), :math:`\dots`]); *ids* must be provided by the user, and
*data* must have the ``ALLOCATABLE`` attribute and be of rank 1 (i.e.,
``DIMENSION(:)``). If *data* is already allocated, it will be reallocated to
fit the length of the incoming data.
This function is not compatible with ``-DLAMMPS_BIGBIG``.
:p character(len=\*) name: quantity to be scattered
:p integer(c_int) ids [dimension(:)]: atom IDs corresponding to the atoms
being scattered (e.g., "x" or "f" for atom properties, "f_id" for per-atom
fix data, "c_id" for per-atom compute data, "d_name" or "i_name" for fix
property/atom vectors with *count* = 1, "d2_name" or "i2_name" for fix
property/atom vectors with *count*\ :math:`{} > 1`)
:p integer(c_int) count: number of per-atom values you expect per atom
(e.g., 1 for *type*, *mask*, or *charge*; 3 for *x*, *v*, or *f*). Use
*count* = 3 with *image* if you want a single image flag unpacked into
*x*/*y*/*z* components.
:p data: per-atom values packed into a one-dimensional array containing the
data to be scattered. This array must have the ``ALLOCATABLE`` attribute
and will be allocated either to the same length as *ids*
(for *mask*, *type*, etc.) or to three times its length (for *x*, *f*,
etc.); the array must be rank 1 and be of type ``INTEGER(c_int)`` (e.g.,
for *mask* or *type*) or of type ``REAL(c_double)`` (e.g., for *charge*,
*x*, or *f*).
:ptype data: polymorphic,dimension(:),allocatable
:to: :cpp:func:`lammps_gather_subset` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1969: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: scatter(name, data)
This function calls :cpp:func:`lammps_scatter` to scatter the named
per-atom, per-atom fix, per-atom compute, or fix property/atom-based entity
in *data* to all processes.
.. versionadded:: 22Dec2022
This subroutine takes data stored in a one-dimensional array supplied by the
user and scatters them to all atoms on all processes. The data must be
ordered by atom ID, with the requirement that the IDs be consecutive. Use
:f:subr:`scatter_subset` to scatter data for some (or all) atoms, unordered.
The *data* array needs to be ordered in groups of *count* values, sorted by
atom ID (e.g., if *name* is *x* and *count* = 3, then *data* = [*x*\ (1,1),
*x*\ (2,1), *x*\ (3,1), *x*\ (1,2), *x*\ (2,2), *x*\ (3,2), *x*\ (1,3),
:math:`\dots`]); *data* must be of length (*count* :math:`\times` *natoms*).
This function is not compatible with ``-DLAMMPS_BIGBIG``.
:p character(len=*) name: desired quantity (e.g., "x" or "f" for atom
properties, "f_id" for per-atom fix data, "c_id" for per-atom compute data,
"d_name" or "i_name" for fix property/atom vectors with *count* = 1,
"d2_name" or "i2_name" for fix property/atom vectors with *count*\
:math:`{} > 1`)
:p data: per-atom values packed in a one-dimensional array; *data* should be
of type ``INTEGER(c_int)`` or ``REAL(c_double)``, depending on the type of
data being scattered, and be of rank 1 (i.e., ``DIMENSION(:)``).
:ptype data: polymorphic,dimension(:)
:to: :cpp:func:`lammps_scatter` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2002: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: scatter_subset(name, ids, data)
This function calls :cpp:func:`lammps_scatter_subset` to scatter the named
per-atom, per-atom fix, per-atom compute, or fix property/atom-based
entities in *data* from a subset of atoms to all processes.
.. versionadded:: 22Dec2022
This subroutine takes data stored in a one-dimensional array supplied by the
user and scatters them to a subset of atoms on all processes. The array
*data* contains data associated with atom IDs, but there is no requirement
that the IDs be consecutive, as they are provided in a separate array.
Use :f:subr:`scatter` to scatter data for all atoms, in order.
The *data* array needs to be organized in groups of *count* values, with the
groups in the same order as the array *ids*. For example, if you want *data*
to be the array [x(1,1), x(2,1), x(3,1), x(1,100), x(2,100), x(3,100),
x(1,57), x(2,57), x(3,57)], then *count* = 3 and *ids* = [1, 100, 57].
This function is not compatible with ``-DLAMMPS_BIGBIG``.
:p character(len=\*) name: desired quantity (e.g., "x" or "mask" for atom
properties, "f_id" for per-atom fix data, "c_id" for per-atom compute data,
"d_name" or "i_name" for fix property/atom vectors with *count* = 1,
"d2_name" or "i2_name" for fix property/atom vectors with
*count*\ :math:`{}> 1`)
:p integer(c_int) ids: list of atom IDs to scatter data for
:p polymorphic data [dimension(:)]: per-atom values packed in a
one-dimensional array of length *size(ids)* \* *count*.
:to: :cpp:func:`lammps_scatter_subset` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2035: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: create_atoms([id,] type, x, [v,] [image,] [bexpand])
This method calls :cpp:func:`lammps_create_atoms` to create additional atoms
from a given list of coordinates and a list of atom types. Additionally,
the atom IDs, velocities, and image flags may be provided.
.. versionadded:: 3Nov2022
:p integer(c_int) type [dimension(N)]: vector of :math:`N` atom types
(required/see note below)
:p real(c_double) x [dimension(3N)]: vector of :math:`3N\ x/y/z` positions
of the new atoms, arranged as :math:`[x_1,y_1,z_1,x_2,y_2,\dotsc]`
(required/see note below)
:o integer(kind=\*) id [dimension(N),optional]: vector of :math:`N` atom
IDs; if absent, LAMMPS will generate them for you. \*The ``KIND`` parameter
should be ``c_int`` unless LAMMPS was compiled with ``-DLAMMPS_BIGBIG``, in
which case it should be ``c_int64_t``.
:o real(c_double) v [dimension(3N),optional]: vector of :math:`3N`
*x*\ /*y*\ /*z* velocities of the new atoms, arranged as
:math:`[v_{1,x},v_{1,y},v_{1,z},v_{2,x}, \dotsc]`; if absent, they will be
set to zero
:o integer(kind=\*) image [dimension(N),optional]: vector of :math:`N` image
flags; if absent, they are set to zero. \*The ``KIND`` parameter should be
``c_int`` unless LAMMPS was compiled with ``-DLAMMPS_BIGBIG``, in which
case it should be ``c_int64_t``. See note below.
:o bexpand: if ``.TRUE.``, atoms outside of shrink-wrap boundaries
will be created, not dropped, and the box dimensions will be extended.
Default is ``.FALSE.``
:otype bexpand: logical,optional
:to: :cpp:func:`lammps_create_atoms`
.. note::
The *type* and *x* arguments are required, but they are declared
``OPTIONAL`` in the module because making them mandatory would require
*id* to be present as well. To have LAMMPS generate the ids for you,
use a call something like
.. code-block:: fortran
lmp%create_atoms(type=new_types, x=new_xs)
.. note::
When LAMMPS has been compiled with ``-DLAMMPS_BIGBIG``, it is not
possible to include the *image* parameter but omit the *id* parameter.
Either *id* must be present, or both *id* and *image* must be absent.
This is required because having all arguments be optional in both
generic functions creates an ambiguous interface. This limitation does
not exist if LAMMPS was not compiled with ``-DLAMMPS_BIGBIG``. [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2088: ERROR: Unknown directive type "f:function".
.. f:function:: find_pair_neighlist(style[, exact][, nsub][, reqid])
Find index of a neighbor list requested by a pair style.
.. versionadded:: 3Nov2022
This function determines which of the available neighbor lists for pair
styles matches the given conditions. It first matches the style name.
If *exact* is ``.TRUE.``, the name must match exactly; if ``.FALSE.``, a
regular expression or sub-string match is done. If the pair style is
*hybrid* or *hybrid/overlay*, the style is matched against the sub-styles
instead. If the same pair style is used multiple times as a sub-style, the
*nsub* argument must be :math:`> 0`; this argument represents the *n*\ th
instance of the sub-style (same as for the :doc:`pair_coeff <pair_coeff>`
command, for example). In that case, *nsub*\ :math:`{} = 0` will not
produce a match, and the function will return :math:`-1`.
The final condition to be checked is the request ID (\ *reqid*\ ). This
will usually be zero, but some pair styles request multiple neighbor
lists and set the request ID to a value greater than zero.
:p character(len=\*) style: String used to search for pair style instance.
:o exact: Flag to control whether style should match exactly or only a
regular expression/sub-string match is applied. Default: ``.TRUE.``.
:otype exact: logical,optional
:o integer(c_int) nsub [optional]: Match *nsub*\ th hybrid sub-style
instance of the same style. Default: 0.
:o integer(c_int) reqid [optional]: Request ID to identify the neighbor list
in case there are multiple requests from the same pair style instance.
Default: 0.
:to: :cpp:func:`lammps_find_pair_neighlist`
:r integer(c_int) index: Neighbor list index if found, otherwise
:math:`-1`. [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2124: ERROR: Unknown directive type "f:function".
.. f:function:: find_fix_neighlist(id[, reqid])
Find index of a neighbor list requested by a fix.
.. versionadded:: 3Nov2022
The neighbor list request from a fix is identified by the fix ID and the
request ID. The request ID is typically zero, but will be :math:`>0` for
fixes with multiple neighbor list requests.
:p character(len=\*) id: Identifier of fix instance
:o integer(c_int) reqid [optional]: request ID to identify the neighbor list
in cases in which there are multiple requests from the same fix.
Default: 0.
:to: :cpp:func:`lammps_find_fix_neighlist`
:r index: neighbor list index if found, otherwise :math:`-1`
:rtype index: integer(c_int) [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2144: ERROR: Unknown directive type "f:function".
.. f:function:: find_compute_neighlist(id[, reqid])
Find index of a neighbor list requested by a compute.
.. versionadded:: 3Nov2022
The neighbor list request from a compute is identified by the compute ID and
the request ID. The request ID is typically zero, but will be :math:`> 0`
in case a compute has multiple neighbor list requests.
:p character(len=\*) id: Identifier of compute instance.
:o integer(c_int) reqid [optional]: request ID to identify the neighbor list
in cases in which there are multiple requests from the same compute.
Default: 0.
:to: :cpp:func:`lammps_find_compute_neighlist`
:r index: neighbor list index if found, otherwise :math:`-1`.
:rtype index: integer(c_int) [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2164: ERROR: Unknown directive type "f:function".
.. f:function:: neighlist_num_elements(idx)
Return the number of entries in the neighbor list with the given index.
.. versionadded:: 3Nov2022
:p integer(c_int) idx: neighbor list index
:to: :cpp:func:`lammps_neighlist_num_elements`
:r inum: number of entries in neighbor list, or :math:`-1` if *idx* is not
a valid index.
:rtype inum: integer(c_int)
:to: :cpp:func:`lammps_neighlist_num_elements` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2179: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: neighlist_element_neighbors(idx, element, iatom, neighbors)
Return atom local index, number of neighbors, and array of neighbor local
atom indices of a neighbor list entry.
.. versionadded:: 3Nov2022
:p integer(c_int) idx: index of this neighbor list in the list of all
neighbor lists
:p integer(c_int) element: index of this neighbor list entry
:p integer(c_int) iatom: local atom index (i.e., in the range
[1,nlocal+nghost]; -1 if invalid or element value
:p integer(c_int) neighbors [dimension(:),pointer]: pointer to an array of
neighboring atom local indices
:to: :cpp:func:`lammps_neighlist_element_neighbors` [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2197: ERROR: Unknown directive type "f:function".
.. f:function:: version()
This method returns the numeric LAMMPS version like
:cpp:func:`lammps_version` does.
:to: :cpp:func:`lammps_version`
:r version: LAMMPS version
:rtype version: integer [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2208: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: get_os_info(buffer)
This function can be used to retrieve detailed information about the hosting
operating system and compiler/runtime environment.
.. versionadded:: 3Nov2022
A suitable buffer has to be provided. The assembled text will be truncated
so as not to overflow this buffer. The string is typically a few hundred
bytes long.
:p character(len=\*) buffer: string that will house the information.
:to: :cpp:func:`lammps_get_os_info` [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2225: ERROR: Unknown directive type "f:function".
.. f:function:: config_has_mpi_support()
This function is used to query whether LAMMPS was compiled with a real MPI
library or in serial.
.. versionadded:: 3Nov2022
:to: :cpp:func:`lammps_config_has_mpi_support`
:r has_mpi: ``.FALSE.`` when compiled with STUBS, ``.TRUE.`` if
complied with MPI.
:rtype has_mpi: logical [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2239: ERROR: Unknown directive type "f:function".
.. f:function:: config_has_gzip_support()
Check if the LAMMPS library supports reading or writing compressed
files via a pipe to gzip or similar compression programs.
.. versionadded:: 3Nov2022
Several LAMMPS commands (e.g., :doc:`read_data`, :doc:`write_data`,
:doc:`dump styles atom, custom, and xyz <dump>`) support reading and writing
compressed files via creating a pipe to the ``gzip`` program. This function
checks whether this feature was :ref:`enabled at compile time <gzip>`.
It does **not** check whether ``gzip`` or any other supported compression
programs themselves are installed and usable.
:to: :cpp:func:`lammps_config_has_gzip_support`
:r has_gzip:
:rtype has_gzip: logical [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2259: ERROR: Unknown directive type "f:function".
.. f:function:: config_has_png_support()
Check if the LAMMPS library supports writing PNG format images.
.. versionadded:: 3Nov2022
The LAMMPS :doc:`dump style image <dump_image>` supports writing multiple
image file formats. Most of them, however, need support from an external
library, and using that has to be :ref:`enabled at compile time <graphics>`.
This function checks whether support for the `PNG image file format
<https://en.wikipedia.org/wiki/Portable_Network_Graphics>`_ is available
in the current LAMMPS library.
:to: :cpp:func:`lammps_config_has_png_support`
:r has_png:
:rtype has_png: logical [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2278: ERROR: Unknown directive type "f:function".
.. f:function:: config_has_jpeg_support()
Check if the LAMMPS library supports writing JPEG format images.
.. versionadded:: 3Nov2022
The LAMMPS :doc:`dump style image <dump_image>` supports writing multiple
image file formats. Most of them, however, need support from an external
library, and using that has to be :ref:`enabled at compile time <graphics>`.
This function checks whether support for the `JPEG image file format
<https://jpeg.org/jpeg/>`_ is available in the current LAMMPS library.
:to: :cpp:func:`lammps_config_has_jpeg_support`
:r has_jpeg:
:rtype has_jpeg: logical [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2296: ERROR: Unknown directive type "f:function".
.. f:function:: config_has_ffmpeg_support()
Check if the LAMMPS library supports creating movie files via a pipe to
ffmpeg.
.. versionadded:: 3Nov2022
The LAMMPS :doc:`dump style movie <dump_image>` supports generating movies
from images on-the-fly via creating a pipe to the
`ffmpeg <https://ffmpeg.org/>`_ program.
This function checks whether this feature was
:ref:`enabled at compile time <graphics>`.
It does **not** check whether the ``ffmpeg`` itself is installed and usable.
:to: :cpp:func:`lammps_config_has_ffmpeg_support`
:r has_ffmpeg:
:rtype has_ffmpeg: logical [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2316: ERROR: Unknown directive type "f:function".
.. f:function:: config_has_exceptions()
Check whether LAMMPS errors will throw C++ exceptions.
.. versionadded:: 3Nov2022
When using the library interface, the library interface functions
will "catch" exceptions, and then the error status can be checked by
calling :f:func:`has_error`. The most recent error message can be
retrieved via :f:func:`get_last_error_message`. This allows to
restart a calculation or delete and recreate the LAMMPS instance when
a C++ exception occurs. One application of using exceptions this way
is the :ref:`lammps_shell`.
:to: :cpp:func:`lammps_config_has_exceptions`
:r has_exceptions:
:rtype has_exceptions: logical [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2336: ERROR: Unknown directive type "f:function".
.. f:function:: config_has_package(name)
Check whether a specific package has been included in LAMMPS
.. versionadded:: 3Nov2022
This function checks whether the LAMMPS library in use includes the specific
:doc:`LAMMPS package <Packages>` provided as argument.
:to: :cpp:func:`lammps_config_has_package`
:r has_package:
:rtype has_package: logical [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2351: ERROR: Unknown directive type "f:function".
.. f:function:: config_package_count()
Count the number of installed packages in the LAMMPS library.
.. versionadded:: 3Nov2022
This function counts how many :doc:`LAMMPS packages <Packages>` are
included in the LAMMPS library in use. It directly calls the C library
function :cpp:func:`lammps_config_package_count`.
:to: :cpp:func:`lammps_config_package_count`
:r integer(c_int) npackages: number of packages installed [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2366: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: config_package_name(idx, buffer)
Get the name of a package in the list of installed packages in the LAMMPS
library.
.. versionadded:: 3Nov2022
This subroutine copies the name of the package with the index *idx* into the
provided string *buffer*. If the name of the package exceeds the length of
the buffer, it will be truncated accordingly. If the index is out of range,
*buffer* is set to an empty string.
:p integer(c_int) idx: index of the package in the list of included packages
:math:`(0 \le idx < \text{package count})`
:p character(len=\*) buffer: string to hold the name of the package
:to: :cpp:func:`lammps_config_package_name` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2385: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: installed_packages(package[, length])
Obtain a list of the names of enabled packages in the LAMMPS shared library
and store it in *package*.
.. versionadded:: 3Nov2022
This function is analogous to the :py:meth:`installed_packages
<lammps.lammps.installed_packages>` function in the Python API.
The optional argument *length* sets the length of each string in the vector
*package* (default: 31).
:p character(len=:) package [dimension(:),allocatable]: list of packages;
*must* have the ``ALLOCATABLE`` attribute and be of rank 1
(i.e., ``DIMENSION(:)``) with allocatable length.
:o length: length of each string in the list. Default: 31.
:otype length: integer,optional
:to: :cpp:func:`lammps_config_package_count`
:to: :cpp:func:`lammps_config_package_name` [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2407: ERROR: Unknown directive type "f:function".
.. f:function:: config_accelerator(package, category, setting)
This function calls :cpp:func:`lammps_config_accelerator` to check the
availability of compile time settings of included
:doc:`accelerator packages <Speed_packages>` in LAMMPS.
.. versionadded:: 3Nov2022
Supported packages names are "GPU", "KOKKOS", "INTEL", and "OPENMP".
Supported categories are "api" with possible settings "cuda", "hip", "phi",
"pthreads", "opencl", "openmp", and "serial"; and "precision" with
possible settings "double", "mixed", and "single".
:p character(len=\*) package: string with the name of the accelerator
package
:p character(len=\*) category: string with the name of the setting
:p character(len=\*) setting: string with the name of the specific
setting
:to: :cpp:func:`lammps_config_accelerator`
:r available: ``.TRUE.`` if the combination of package, category,
and setting is available, otherwise ``.FALSE.``.
:rtype available: logical [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2432: ERROR: Unknown directive type "f:function".
.. f:function:: has_gpu_device()
Checks for the presence of a viable GPU package device.
.. versionadded:: 3Nov2022
This function calls :cpp:func:`lammps_has_gpu_device`, which checks at
runtime whether an accelerator device is present that can be used with the
:doc:`GPU package <Speed_gpu>`.
More detailed information about the available device or devices can
be obtained by calling the
:f:subr:`get_gpu_device_info` subroutine.
:to: :cpp:func:`lammps_has_gpu_device`
:r available: ``.TRUE.`` if a viable device is available, ``.FALSE.`` if not.
:rtype available: logical [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2452: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: get_gpu_device_info(buffer)
Get GPU package device information.
.. versionadded:: 3Nov2022
Calls :cpp:func:`lammps_get_gpu_device_info` to retrieve detailed
information about any accelerator devices that are viable for use with the
:doc:`GPU package <Speed_gpu>`. It will fill *buffer* with a string that is
equivalent to the output of the ``nvc_get_device`` or ``ocl_get_device`` or
``hip_get_device`` tools that are compiled alongside LAMMPS if the GPU
package is enabled.
A suitable-length Fortran string has to be provided. The assembled text will
be truncated so as not to overflow this buffer. This string can be several
kilobytes long if multiple devices are present.
:p character(len=\*) buffer: string into which to copy the information.
:to: :cpp:func:`lammps_get_gpu_device_info` [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2474: ERROR: Unknown directive type "f:function".
.. f:function:: has_style(category, name)
Check whether a specific style has been included in LAMMPS.
.. versionadded:: 3Nov2022
This function calls :cpp:func:`lammps_has_style` to check whether the
LAMMPS library in use includes the specific style *name* associated with a
specific *category* provided as arguments. Please see
:cpp:func:`lammps_has_style` for a list of valid categories.
:p character(len=\*) category: category of the style
:p character(len=\*) name: name of the style
:to: :cpp:func:`lammps_has_style`
:r has_style: ``.TRUE.`` if included, ``.FALSE.`` if not.
:rtype has_style: logical [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2493: ERROR: Unknown directive type "f:function".
.. f:function:: style_count(category)
Count the number of styles of *category* in the LAMMPS library.
.. versionadded:: 3Nov2022
This function counts how many styles in the provided *category* are
included in the LAMMPS library currently in use. Please see
:cpp:func:`lammps_has_style` for a list of valid categories.
:p character(len=\*) category: category of styles to count
:to: :cpp:func:`lammps_style_count`
:r integer(c_int) count: number of styles in *category* [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2509: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: style_name(category, idx, buffer)
Look up the name of a style by index in the list of styles of a given
category in the LAMMPS library.
.. versionadded:: 3Nov2022
This function calls :cpp:func:`lammps_style_name` and copies the name of
the *category* style with index *idx* into the provided string *buffer*.
The length of *buffer* must be long enough to contain the name of the
style; if it is too short, the name will be truncated accordingly.
If *idx* is out of range, *buffer* will be the empty string and a warning
will be issued.
:p character(len=\*) category: category of styles
:p integer(c_int) idx: index of the style in the list of *category*
styles :math:`(1 \leq idx \leq \text{style count})`
:p character(len\*) buffer: string buffer to copy the name of the style
into
:to: :cpp:func:`lammps_style_name` [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2532: ERROR: Unknown directive type "f:function".
.. f:function:: has_id(category, name)
This function checks if the current LAMMPS instance a *category* ID of
the given *name* exists. Valid categories are: *compute*\ , *dump*\ ,
*fix*\ , *group*\ , *molecule*\ , *region*\ , and *variable*\ .
.. versionadded:: 3Nov2022
:p character(len=\*) category: category of the ID
:p character(len=\*) name: name of the ID
:to: :cpp:func:`lammps_has_id`
:r has_id: ``.TRUE.`` if *category* style *name* exists, ``.FALSE.`` if not.
:rtype has_id: logical [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2548: ERROR: Unknown directive type "f:function".
.. f:function:: id_count(category)
This function counts how many IDs in the provided *category* are defined in
the current LAMMPS instance. Please see :f:func:`has_id` for a list of
valid categories.
.. versionadded:: 3Nov2022
:p character(len=\*) category: category of the ID
:to: :cpp:func:`lammps_id_count`
:r count: number of IDs in *category*
:rtype count: integer(c_int) [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2563: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: id_name(category, idx, buffer)
Look up the name of an ID by index in the list of IDs of a given category.
.. versionadded:: 3Nov2022
This function copies the name of the *category* ID with the index *idx* into
the provided string *buffer*\ . The length of the buffer must be long
enough to hold the string; if the name of the style exceeds the length of
the buffer, it will be truncated accordingly. If *buffer* is
``ALLOCATABLE``, it must be allocated *before* the function is called.
If *idx* is out of range, *buffer* is set to an empty string and a warning
is issued.
:p character(len=\*) category: category of IDs
:p integer(c_int) idx: index of the ID in the list of *category*
styles (:math:`0 \leq idx < count`)
:p character(len=\*) buffer: string into which to copy the name of the
style
:to: :cpp:func:`lammps_id_name` [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2586: ERROR: Unknown directive type "f:function".
.. f:function:: plugin_count()
This function counts the number of loaded plugins.
.. versionadded:: 3Nov2022
:to: :cpp:func:`lammps_plugin_count`
:r n: number of loaded plugins
:rtype n: integer(c_int) [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2598: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: plugin_name(idx, stylebuf, namebuf)
Look up the style and name of a plugin by its index in the list of plugins.
.. versionadded:: 3Nov2022
This function copies the name of the *style* plugin with the index *idx*
into the provided C-style string buffer. The length of the buffer must be
provided as *buf_size* argument. If the name of the style exceeds the
length of the buffer, it will be truncated accordingly. If the index is out
of range, both strings are set to the empty string and a warning is
printed.
:p integer(c_int) idx: index of the plugin in the list all or
*style* plugins
:p character(len=\*) stylebuf: string into which to copy the style of the
plugin
:p character(len=\*) namebuf: string into which to copy the style of the
plugin
:to: :cpp:func:`lammps_plugin_name` [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2621: ERROR: Unknown directive type "f:function".
.. f:function:: encode_image_flags(ix, iy, iz)
Encodes three integer image flags into a single imageint.
.. versionadded:: 3Nov2022
This function performs the bit-shift, addition, and bit-wise OR operations
necessary to combine the values of three integers representing the image
flags in the :math:`x`-, :math:`y`-, and :math:`z`-directions. Unless LAMMPS
is compiled with ``-DLAMMPS_BIGBIG``, those integers are limited to 10-bit
signed integers :math:`[-512,512)`. If ``-DLAMMPS_BIGBIG`` was used when
compiling, then the return value is of kind ``c_int64_t`` instead of
kind ``c_int``, and the valid range for the individual image flags becomes
:math:`[-1048576,1048575)` (i.e., the range of a 21-bit signed integer).
There is no check on whether the arguments conform to these requirements;
values out of range will simply be wrapped back into the interval.
:p integer(c_int) ix: image flag in :math:`x`-direction
:p integer(c_int) iy: image flag in :math:`y`-direction
:p integer(c_int) iz: image flag in :math:`z`-direction
:r integer(kind=\*) imageint: encoded image flag. \*The ``KIND`` parameter
is ``c_int`` unless LAMMPS was built with ``-DLAMMPS_BIGBIG``, in which
case it is ``c_int64_t``.
.. note::
The fact that the programmer does not know the ``KIND`` parameter of the
return value until compile time means that it is impossible to define an
interface that works for both sizes of ``imageint``. One side effect of
this is that you must assign the return value of this function to a
variable; it cannot be used as the argument to another function or as part
of an array constructor. For example,
.. code-block:: fortran
my_images = [lmp%encode_image_flags(0,0,0), lmp%encode_image_flags(1,0,0)]
will *not* work; instead, do something like
.. code-block:: fortran
my_images(1) = lmp%encode_image_flags(0,0,0)
my_images(2) = lmp%encode_image_flags(1,0,0) [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2667: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: decode_image_flags(image, flags)
This function does the reverse operation of :f:func:`encode_image_flags`:
it takes the image flag and performs the bit-shift and bit-masking
operations to decode it and stores the resulting three integers into the
array *flags*.
.. versionadded:: 3Nov2022
:p integer(kind=\*) image: encoded image flag. \*The ``KIND`` parameter is
either ``c_int`` or, if LAMMPS was compiled with ``-DLAMMPS_BIGBIG``,
``c_int64_t``. Kind compatibility is checked at run-time.
:p integer(c_int) flags [dimension(3)]: three-element vector where the
decoded image flags will be stored. [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2684: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: set_fix_external_callback(id, callback, caller)
Set the callback function for a :doc:`fix external <fix_external>` instance
with the given ID.
.. versionadded:: 22Dec2022
Fix :doc:`external <fix_external>` allows programs that are running LAMMPS
through its library interface to modify certain LAMMPS properties on
specific time steps, similar to the way other fixes do.
This subroutine sets the callback function for use with the "pf/callback"
mode. The function should have Fortran language bindings with the following
interface, which depends on how LAMMPS was compiled:
.. code-block:: fortran
ABSTRACT INTERFACE
SUBROUTINE external_callback(caller, timestep, ids, x, fexternal)
USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int, c_double, c_int64_t
CLASS(*), INTENT(INOUT) :: caller
INTEGER(c_bigint), INTENT(IN) :: timestep
INTEGER(c_tagint), DIMENSION(:), INTENT(IN) :: ids
REAL(c_double), DIMENSION(:,:), INTENT(IN) :: x
REAL(c_double), DIMENSION(:,:), INTENT(OUT) :: fexternal
END SUBROUTINE external_callback
END INTERFACE
where ``c_bigint`` is ``c_int`` if ``-DLAMMPS_SMALLSMALL`` was used and
``c_int64_t`` otherwise; and ``c_tagint`` is ``c_int64_t`` if
``-DLAMMPS_BIGBIG`` was used and ``c_int`` otherwise.
The argument *caller* to :f:subr:`set_fix_external_callback` is unlimited
polymorphic (i.e., it can be any Fortran object you want to pass to the
calling function) and will be available as the first argument to the
callback function. It can be your LAMMPS instance, which you might need if
the callback function needs access to the library interface.
The argument must be a scalar; to pass non-scalar data, wrap those data in
a derived type and pass an instance of the derived type to *caller*.
The array *ids* is an array of length *nlocal* (as accessed from the
:cpp:class:`Atom` class or through :f:func:`extract_global`). The arrays
*x* and *fexternal* are :math:`3 \times {}`\ *nlocal* arrays; these are
transposed from what they would look like in C (see note about array index
order at :f:func:`extract_atom`).
The callback mechanism is one of two ways that forces can be applied to a
simulation with the help of :doc:`fix external <fix_external>`. The
alternative is *array* mode, where one calls
:f:func:`fix_external_get_force`.
Please see the documentation for :doc:`fix external <fix_external>` for
more information about how to use the fix and couple it with external
programs.
:p character(len=*) id: ID of :doc:`fix external <fix_external>` instance
:p callback: subroutine :doc:`fix external <fix_external>` should call
:ptype callback: external
:p class(*) caller [optional]: object you wish to pass to the callback
procedure (must be a scalar; see note)
:to: :cpp:func:`lammps_set_fix_external_callback`
.. note::
The interface for your callback function must match types precisely
with the abstract interface block given above. **The compiler probably
will not be able to check this for you.** In particular, the first
argument ("caller") must be of type ``CLASS(*)`` or you will probably
get a segmentation fault or at least a misinterpretation of whatever is
in memory there. You can resolve the object using the ``SELECT TYPE``
construct. An example callback function (assuming LAMMPS was compiled
with ``-DLAMMPS_SMALLBIG``) that applies something akin to Hooke's Law
(with each atom having a different *k* value) is shown below.
.. code-block:: fortran
MODULE stuff
USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int, c_double, c_int64_t
USE, INTRINSIC :: ISO_FORTRAN_ENV, ONLY : error_unit
IMPLICIT NONE
TYPE shield
REAL(c_double), DIMENSION(:,:), ALLOCATABLE :: k
! assume k gets allocated to dimension(3,nlocal) at some point
! and assigned values
END TYPE shield
SUBROUTINE my_callback(caller, timestep, ids, x, fexternal)
CLASS(*), INTENT(INOUT) :: caller
INTEGER(c_int), INTENT(IN) :: timestep
INTEGER(c_int64_t), INTENT(IN) :: ids
REAL(c_double), INTENT(IN) :: x(:,:)
REAL(c_double), INTENT(OUT) :: fexternal(:,:)
SELECT TYPE (caller)
TYPE IS (shield)
fexternal = - caller%k * x
CLASS DEFAULT
WRITE(error_unit,*) 'UH OH...'
END SELECT
END SUBROUTINE my_callback
END MODULE stuff
! then, when assigning the callback function, do this:
PROGRAM example
USE LIBLAMMPS
USE stuff
TYPE(lammps) :: lmp
TYPE(shield) :: my_shield
lmp = lammps()
CALL lmp%command('fix ext all external pf/callback 1 1')
CALL lmp%set_fix_external_callback('ext', my_callback, my_shield)
END PROGRAM example [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2800: ERROR: Unknown directive type "f:function".
.. f:function:: fix_external_get_force(id)
Get pointer to the force array storage in a fix external instance with the
given ID.
.. versionadded:: 22Dec2022
Fix :doc:`external <fix_external>` allows programs that are running LAMMPS
through its library interfaces to add or modify certain LAMMPS properties on
specific time steps, similar to the way other fixes do.
This function provides access to the per-atom force storage in a fix
external instance with the given fix-ID to be added to the individual
atoms when using the "pf/array" mode. The *fexternal* array can be
accessed like other "native" per-atom arrays accessible via the
:f:func:`extract_atom` function. Please note that the array
stores the forces for *local* atoms for each MPI rank, in the order
determined by the neighbor list build. Because the underlying data
structures can change as well as the order of atom as they migrate between
MPI processes because of the domain decomposition parallelization, this
function should be always called immediately before the forces are going to
be set to get an up-to-date pointer. You can use, for example,
:f:func:`extract_setting` to obtain the number of local atoms `nlocal` and
then assume the dimensions of the returned force array as
``REAL(c_double) :: force(3,nlocal)``.
This function is an alternative to the callback mechanism in fix external
set up by :f:subr:`set_fix_external_callback`. The main difference is that
this mechanism can be used when forces are to be pre-computed and the
control alternates between LAMMPS and the external driver, while the
callback mechanism can call an external subroutine to compute the force when
the fix is triggered and needs them.
Please see the documentation for :doc:`fix external <fix_external>` for
more information about how to use the fix and how to couple it with an
external program.
:p character(len=*) id: ID of :doc:`fix external <fix_external>` instance
:to: :cpp:func:`lammps_fix_external_get_force`
:r fexternal: pointer to the per-atom force array allocated by the fix
:rtype fexternal: real(c_double),dimension(3,nlocal) [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2844: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: fix_external_set_energy_global(id, eng)
Set the global energy contribution for a :doc:`fix external <fix_external>`
instance with the given ID.
.. versionadded:: 22Dec2022
This is a companion function to :f:func:`set_fix_external_callback`
and :f:func:`fix_external_get_force` that also sets the contribution to the
global energy from the external program. The value of the *eng* argument
will be stored in the fix and applied on the current and all following
time steps until changed by another call to this function. The energy is in
energy units as determined by the current :doc:`units <units>` settings and
is the **total** energy of the contribution. Thus, when running in
parallel, all MPI processes have to call this function with the **same**
value, and this will be returned as a scalar property of the fix external
instance when accessed in LAMMPS input commands or from variables.
Please see the documentation for :doc:`fix external <fix_external>` for more
information about how to use the fix and how to couple it with an external
program.
:p character(len=*) id: fix ID of fix external instance
:p real(c_double) eng: total energy to be added to the global energy
:to: :cpp:func:`lammps_fix_external_set_energy_global` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2872: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: fix_external_set_virial_global(id, virial)
Set the global virial contribution for a fix external instance with the
given ID.
.. versionadded:: 22Dec2022
This is a companion function to :f:subr:`set_fix_external_callback`
and :f:func:`fix_external_get_force` to set the contribution to the global
virial from an external program.
The six values of the *virial* array will be stored in the fix and applied
on the current and all following time steps until changed by another call
to this function. The components of the virial need to be stored in the
following order: *xx*, *yy*, *zz*, *xy*, *xz*, *yz*. In LAMMPS, the virial
is stored internally as `stress*volume` in units of `pressure*volume` as
determined by the current :doc:`units <units>` settings and is the
**total** contribution. Thus, when running in parallel, all MPI processes
have to call this function with the **same** value, and this will then be
added by fix external.
Please see the documentation for :doc:`fix external <fix_external>` for
more information about how to use the fix and how to couple it with an
external code.
:p character(len=*) id: fix ID of fix external instance
:p real(c_double) virial [dimension(6)]: the six global stress tensor
components to be added to the global virial
:to: :cpp:func:`lammps_fix_external_set_virial_global` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2904: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: fix_external_set_energy_peratom(id, eng)
Set the per-atom energy contribution for a fix external instance with the
given ID.
.. versionadded:: 22Dec2022
This is a companion function to :f:subr:`set_fix_external_callback` to set
the per-atom energy contribution due to the fix from the external program as
part of the callback function. For this to work, the LAMMPS object must be
passed as part of the *caller* argument when registering the callback
function, or the callback function must otherwise have access to the
LAMMPS object, such as through a module-based pointer.
.. note::
This function is fully independent from
:f:subr:`fix_external_set_energy_global` and will **NOT** add any
contributions to the global energy tally and will **NOT** check whether
the sum of the contributions added here are consistent with the global
added energy.
Please see the documentation for :doc:`fix external <fix_external>` for
more information about how to use the fix and how to couple it with an
external code.
:p character(len=*) id: fix ID of the fix external instance
:p real(c_double) eng [dimension(:)]: array of length *nlocal* containing
the energy to add to the per-atom energy
:to: :cpp:func:`lammps_fix_external_set_energy_peratom` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2937: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: set_fix_external_set_virial_peratom(id, virial)
This is a companion function to :f:subr:`set_fix_external_callback` to set
the per-atom virial contribution due to the fix from the external program as
part of the callback function. For this to work, the LAMMPS object must be
passed as the *caller* argument when registering the callback function.
.. versionadded:: 22Dec2022
.. note::
This function is fully independent from
:f:subr:`fix_external_set_virial_global` and will **NOT** add any
contributions to the global virial tally and **NOT** check whether the
sum of the contributions added here are consistent with the global added
virial.
The order and units of the per-atom stress tensor elements are the same
as for the global virial. The type and dimensions of the per-atom virial
array must be ``REAL(c_double), DIMENSION(6,nlocal)``.
Please see the documentation for :doc:`fix external <fix_external>` for
more information about how to use the fix and how to couple it with an
external program.
:p character(len=*) id: fix ID of fix external instance
:p real(c_double) virial [dimension(:,:)]: an array of :math:`6 \times{}`\
*nlocal* components to be added to the per-atom virial
:to: :cpp:func:`lammps_set_virial_peratom` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2969: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: fix_external_set_vector_length(id, length)
Set the vector length for a global vector stored with fix external for
analysis.
.. versionadded:: 22Dec2022
This is a companion function to :f:subr:`set_fix_external_callback` and
:f:func:`fix_external_get_force` to set the length of a global vector of
properties that will be stored with the fix via
:f:subr:`fix_external_set_vector`.
This function needs to be called **before** a call to
:f:subr:`fix_external_set_vector` and **before** a run or minimize command.
When running in parallel, it must be called from **all** MPI
processes with the same length argument.
Please see the documentation for :doc:`fix external <fix_external>` for
more information about how to use the fix and how to couple it with an
external program.
:p character(len=*) id: fix ID of fix external instance
:p integer(c_int) length: length of the global vector to be stored with the
fix
:to: :cpp:func:`lammps_fix_external_set_vector_length` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2997: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: fix_external_set_vector(id, idx, val)
Store a global vector value for a fix external instance with the given ID.
.. versionadded:: 22Dec2022
This is a companion function to :f:subr:`set_fix_external_callback` and
:f:func:`fix_external_get_force` to set the values of a global vector of
properties that will be stored with the fix and can be accessed from
within LAMMPS input commands (e.g., fix ave/time or variables) when used
in a vector context.
This function needs to be called **after** a call to
:f:subr:`fix_external_set_vector_length` and **before** a run or minimize
command. When running in parallel, it must be called from **all** MPI
processes with the **same** *idx* and *val* parameters. The variable
*val* is assumed to be extensive.
.. note::
The index in the *idx* parameter is 1-based (i.e., the first element
is set with *idx*\ :math:`{} = 1`, and the last element of the vector
with *idx*\ :math:`{} = N`, where :math:`N` is the value of the *length*
parameter of the call to :f:subr:`fix_external_set_vector_length`).
Please see the documentation for :doc:`fix external <fix_external>` for
more information about how to use the fix and how to couple it with an
external code.
:p character(len=*) id: ID of fix external instance
:p integer(c_int) idx: 1-based index in global vector
:p integer(c_int) val: value to be stored in global vector at index *idx*
:to: :cpp:func:`lammps_fix_external_set_vector` [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:3033: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: flush_buffers()
This function calls :cpp:func:`lammps_flush_buffers`, which flushes buffered
output to be written to screen and logfile. This can simplify capturing
output from LAMMPS library calls.
.. versionadded:: 3Nov2022
:to: :cpp:func:`lammps_flush_buffers` [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:3045: ERROR: Unknown directive type "f:function".
.. f:function:: is_running()
Check if LAMMPS is currently inside a run or minimization.
.. versionadded:: 3Nov2022
This function can be used from signal handlers or multi-threaded
applications to determine if the LAMMPS instance is currently active.
:to: :cpp:func:`lammps_is_running`
:r is_running: ``.FALSE.`` if idle or ``.TRUE.`` if active
:rtype is_running: logical [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:3060: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: force_timeout()
Force a timeout to stop an ongoing run cleanly.
.. versionadded:: 3Nov2022
This function can be used from signal handlers or multi-threaded
applications to terminate an ongoing run cleanly.
:to: :cpp:func:`lammps_force_timeout` [docutils]
WARNING: unknown directive or role name: f:function
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:3073: ERROR: Unknown directive type "f:function".
.. f:function:: has_error()
Check if there is a (new) error message available.
.. versionadded:: 3Nov2022
This function can be used to query if an error inside of LAMMPS
has thrown a :ref:`C++ exception <exceptions>`.
:to: :cpp:func:`lammps_has_error`
:r has_error: ``.TRUE.`` if there is an error.
:rtype has_error: logical [docutils]
WARNING: unknown directive or role name: f:subroutine
/build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:3088: ERROR: Unknown directive type "f:subroutine".
.. f:subroutine:: get_last_error_message(buffer[,status])
Copy the last error message into the provided buffer.
.. versionadded:: 3Nov2022
This function can be used to retrieve the error message that was set
in the event of an error inside of LAMMPS that resulted in a
:ref:`C++ exception <exceptions>`. A suitable buffer for a string has
to be provided. If the internally-stored error message is longer than the
string, it will be truncated accordingly. The optional argument *status*
indicates the kind of error: a "1" indicates an error that occurred on all
MPI ranks and is often recoverable, while a "2" indicates an abort that
would happen only in a single MPI rank and thus may not be recoverable, as
other MPI ranks may be waiting on the failing MPI rank(s) to send messages.
:p character(len=\*) buffer: string buffer to copy the error message into
:o integer(c_int) status [optional]: 1 when all ranks had the error,
2 on a single-rank error.
:to: :cpp:func:`lammps_get_last_error_message` [docutils]
looking for now-outdated files... none found
pickling environment... done
checking consistency... /build/reproducible-path/lammps-20240207+dfsg/doc/src/angle_coeff.rst: document is referenced in multiple toctrees: ['commands_list', 'angles'], selecting: commands_list <- angle_coeff
/build/reproducible-path/lammps-20240207+dfsg/doc/src/angle_style.rst: document is referenced in multiple toctrees: ['commands_list', 'angles'], selecting: commands_list <- angle_style
/build/reproducible-path/lammps-20240207+dfsg/doc/src/angle_write.rst: document is referenced in multiple toctrees: ['commands_list', 'angles'], selecting: commands_list <- angle_write
/build/reproducible-path/lammps-20240207+dfsg/doc/src/bond_coeff.rst: document is referenced in multiple toctrees: ['bonds', 'commands_list'], selecting: commands_list <- bond_coeff
/build/reproducible-path/lammps-20240207+dfsg/doc/src/bond_style.rst: document is referenced in multiple toctrees: ['bonds', 'commands_list'], selecting: commands_list <- bond_style
/build/reproducible-path/lammps-20240207+dfsg/doc/src/bond_write.rst: document is referenced in multiple toctrees: ['bonds', 'commands_list'], selecting: commands_list <- bond_write
/build/reproducible-path/lammps-20240207+dfsg/doc/src/compute_modify.rst: document is referenced in multiple toctrees: ['computes', 'commands_list'], selecting: computes <- compute_modify
/build/reproducible-path/lammps-20240207+dfsg/doc/src/dihedral_coeff.rst: document is referenced in multiple toctrees: ['dihedrals', 'commands_list'], selecting: dihedrals <- dihedral_coeff
/build/reproducible-path/lammps-20240207+dfsg/doc/src/dihedral_style.rst: document is referenced in multiple toctrees: ['dihedrals', 'commands_list'], selecting: dihedrals <- dihedral_style
/build/reproducible-path/lammps-20240207+dfsg/doc/src/dihedral_write.rst: document is referenced in multiple toctrees: ['dihedrals', 'commands_list'], selecting: dihedrals <- dihedral_write
/build/reproducible-path/lammps-20240207+dfsg/doc/src/dump.rst: document is referenced in multiple toctrees: ['dumps', 'commands_list'], selecting: dumps <- dump
/build/reproducible-path/lammps-20240207+dfsg/doc/src/dump_adios.rst: document is referenced in multiple toctrees: ['dumps', 'commands_list'], selecting: dumps <- dump_adios
/build/reproducible-path/lammps-20240207+dfsg/doc/src/dump_cfg_uef.rst: document is referenced in multiple toctrees: ['dumps', 'commands_list'], selecting: dumps <- dump_cfg_uef
/build/reproducible-path/lammps-20240207+dfsg/doc/src/dump_h5md.rst: document is referenced in multiple toctrees: ['dumps', 'commands_list'], selecting: dumps <- dump_h5md
/build/reproducible-path/lammps-20240207+dfsg/doc/src/dump_image.rst: document is referenced in multiple toctrees: ['dumps', 'commands_list'], selecting: dumps <- dump_image
/build/reproducible-path/lammps-20240207+dfsg/doc/src/dump_modify.rst: document is referenced in multiple toctrees: ['dumps', 'commands_list'], selecting: dumps <- dump_modify
/build/reproducible-path/lammps-20240207+dfsg/doc/src/dump_molfile.rst: document is referenced in multiple toctrees: ['dumps', 'commands_list'], selecting: dumps <- dump_molfile
/build/reproducible-path/lammps-20240207+dfsg/doc/src/dump_netcdf.rst: document is referenced in multiple toctrees: ['dumps', 'commands_list'], selecting: dumps <- dump_netcdf
/build/reproducible-path/lammps-20240207+dfsg/doc/src/dump_vtk.rst: document is referenced in multiple toctrees: ['dumps', 'commands_list'], selecting: dumps <- dump_vtk
/build/reproducible-path/lammps-20240207+dfsg/doc/src/fix_modify.rst: document is referenced in multiple toctrees: ['fixes', 'commands_list'], selecting: fixes <- fix_modify
/build/reproducible-path/lammps-20240207+dfsg/doc/src/fix_modify_atc_commands.rst: document is referenced in multiple toctrees: ['Manual', 'fixes'], selecting: fixes <- fix_modify_atc_commands
/build/reproducible-path/lammps-20240207+dfsg/doc/src/improper_coeff.rst: document is referenced in multiple toctrees: ['impropers', 'commands_list'], selecting: impropers <- improper_coeff
/build/reproducible-path/lammps-20240207+dfsg/doc/src/improper_style.rst: document is referenced in multiple toctrees: ['impropers', 'commands_list'], selecting: impropers <- improper_style
/build/reproducible-path/lammps-20240207+dfsg/doc/src/pair_coeff.rst: document is referenced in multiple toctrees: ['pairs', 'commands_list'], selecting: pairs <- pair_coeff
/build/reproducible-path/lammps-20240207+dfsg/doc/src/pair_modify.rst: document is referenced in multiple toctrees: ['pairs', 'commands_list'], selecting: pairs <- pair_modify
/build/reproducible-path/lammps-20240207+dfsg/doc/src/pair_style.rst: document is referenced in multiple toctrees: ['pairs', 'commands_list'], selecting: pairs <- pair_style
/build/reproducible-path/lammps-20240207+dfsg/doc/src/pair_write.rst: document is referenced in multiple toctrees: ['pairs', 'commands_list'], selecting: pairs <- pair_write
done
preparing documents... done
copying assets...
copying static files...
Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/language_data.js
Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/documentation_options.js
Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/basic.css
copying static files: done
copying extra files...
copying extra files: done
copying assets: done
writing output... [ 50%] Library
writing output... [100%] Manual
generating indices... genindex py-modindex done
writing additional pages... search done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 196 warnings.
The HTML pages are in html.
############################################
env: 'rst_anchor_check': No such file or directory
Found 89 packages
Parsed style names w/o suffixes from C++ tree in ../src:
Angle styles: 26 Atom styles: 28
Body styles: 3 Bond styles: 25
Command styles: 51 Compute styles: 169
Dihedral styles: 17 Dump styles: 34
Fix styles: 265 Improper styles: 14
Integrate styles: 4 Kspace styles: 21
Minimize styles: 9 Pair styles: 287
Reader styles: 4 Region styles: 9
----------------------------------------------------
Total number of styles (including suffixes): 1784
Total number of style index entries: 1278
############################################
Build finished. The HTML pages are in doc/html.
make[2]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/doc'
make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg'
debian/rules override_dh_auto_test-arch
make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg'
mkdir test; cp examples/crack/* test/
cd test; /build/reproducible-path/lammps-20240207+dfsg/debian/build/lmp < in.crack
LAMMPS (7 Feb 2024 - Update 1)
OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98)
using 1 OpenMP thread(s) per MPI task
Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771
Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928)
1 by 1 by 1 MPI processor grid
Created 8141 atoms
using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928)
create_atoms CPU = 0.009 seconds
302 atoms in group lower
302 atoms in group upper
604 atoms in group boundary
7537 atoms in group mobile
841 atoms in group leftupper
841 atoms in group leftlower
Setting atom values ...
841 settings made for type
Setting atom values ...
841 settings made for type
Setting atom values ...
302 settings made for type
Setting atom values ...
302 settings made for type
WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529)
Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule
Neighbor list info ...
update: every = 1 steps, delay = 5 steps, check = yes
max neighbors/atom: 2000, page size: 100000
master list distance cutoff = 2.8
ghost atom cutoff = 2.8
binsize = 1.4, bins = 80 56 1
1 neighbor lists, perpetual/occasional/extra = 1 0 0
(1) pair lj/cut, perpetual
attributes: half, newton on
pair build: half/bin/atomonly/newton
stencil: half/bin/2d
bin: standard
Setting up Verlet run ...
Unit style : lj
Current step : 0
Time step : 0.003
Per MPI rank memory allocation (min/avg/max) = 2.8 | 2.8 | 2.8 Mbytes
Step Temp E_pair E_mol TotEng Press Volume
0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917
200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101
400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464
600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569
800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226
1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116
1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863
1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893
1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772
1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017
2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853
2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136
2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991
2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325
2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526
3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552
3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003
3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909
3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783
3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348
4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82
4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113
4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666
4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925
4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122
5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637
Loop time of 23.34 on 1 procs for 5000 steps with 8141 atoms
Performance: 55527.011 tau/day, 214.225 timesteps/s, 1.744 Matom-step/s
100.0% CPU use with 1 MPI tasks x 1 OpenMP threads
MPI task timing breakdown:
Section | min time | avg time | max time |%varavg| %total
---------------------------------------------------------------
Pair | 18.962 | 18.962 | 18.962 | 0.0 | 81.24
Neigh | 1.0958 | 1.0958 | 1.0958 | 0.0 | 4.69
Comm | 0.045762 | 0.045762 | 0.045762 | 0.0 | 0.20
Output | 0.011888 | 0.011888 | 0.011888 | 0.0 | 0.05
Modify | 2.5344 | 2.5344 | 2.5344 | 0.0 | 10.86
Other | | 0.6903 | | | 2.96
Nlocal: 8141 ave 8141 max 8141 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Nghost: 0 ave 0 max 0 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Neighs: 71389 ave 71389 max 71389 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Total # of neighbors = 71389
Ave neighs/atom = 8.7690701
Neighbor list builds = 100
Dangerous builds = 0
Total wall time: 0:00:23
rm -rf test
make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg'
dh_auto_test -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build -Nlammps -Nliblammps-dev -Nliblammps0t64 -Npython3-lammps
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary
dh binary --with python3,sphinxdoc --sourcedirectory=cmake --builddirectory=/build/reproducible-path/lammps-20240207+dfsg/debian/build
dh_testroot -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build
dh_prep -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build
dh_auto_install -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build -Nlammps-doc -Nlammps-data -Nlammps-examples
cd debian/build && make -j4 install DESTDIR=/build/reproducible-path/lammps-20240207\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build'
/usr/bin/cmake -P /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/VerifyGlobs.cmake
/usr/bin/cmake -S/build/reproducible-path/lammps-20240207+dfsg/cmake -B/build/reproducible-path/lammps-20240207+dfsg/debian/build --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/bin/lmp
-- Set non-toolchain portion of runtime path of "/build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/bin/lmp" to ""
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/angle.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/atom.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/bond.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/citeme.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/comm.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/command.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/compute.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/dihedral.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/domain.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/error.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/exceptions.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/fix.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/force.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/group.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/improper.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/input.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/info.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/kspace.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/lammps.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/lattice.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/library.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/lmppython.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/lmptype.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/memory.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/modify.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/neighbor.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/neigh_list.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/output.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/pair.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/platform.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/pointers.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/region.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/timer.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/universe.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/update.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/utils.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/variable.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/fmt/core.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/fmt/format.h
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/liblammps.so.0
-- Set non-toolchain portion of runtime path of "/build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/liblammps.so.0" to ""
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/liblammps.so
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig/liblammps.pc
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/LAMMPS/LAMMPS_Targets.cmake
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/LAMMPS/LAMMPS_Targets-none.cmake
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/LAMMPS/LAMMPSConfig.cmake
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/LAMMPS/LAMMPSConfigVersion.cmake
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/share/man/man1/lmp.1
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/etc/profile.d/lammps.sh
-- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/etc/profile.d/lammps.csh
make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build'
debian/rules execute_after_dh_auto_install-arch
make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg'
LD_LIBRARY_PATH=/build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf \
CMAKE_PREFIX_PATH=/build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake \
pybuild --dir=/build/reproducible-path/lammps-20240207+dfsg/python --system=pyproject --name=lammps
ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module
I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.13_lammps
ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
* Building wheel...
ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
running bdist_wheel
running build
running build_py
creating build/lib/lammps
copying lammps/data.py -> build/lib/lammps
copying lammps/pylammps.py -> build/lib/lammps
copying lammps/formats.py -> build/lib/lammps
copying lammps/core.py -> build/lib/lammps
copying lammps/numpy_wrapper.py -> build/lib/lammps
copying lammps/__init__.py -> build/lib/lammps
copying lammps/constants.py -> build/lib/lammps
creating build/lib/lammps/mliap
copying lammps/mliap/mliap_unified_abc.py -> build/lib/lammps/mliap
copying lammps/mliap/pytorch.py -> build/lib/lammps/mliap
copying lammps/mliap/loader.py -> build/lib/lammps/mliap
copying lammps/mliap/mliap_unified_lj.py -> build/lib/lammps/mliap
copying lammps/mliap/__init__.py -> build/lib/lammps/mliap
installing to build/bdist.linux-armv7l/wheel
running install
running install_lib
creating build/bdist.linux-armv7l/wheel
creating build/bdist.linux-armv7l/wheel/lammps
copying build/lib/lammps/data.py -> build/bdist.linux-armv7l/wheel/./lammps
creating build/bdist.linux-armv7l/wheel/lammps/mliap
copying build/lib/lammps/mliap/mliap_unified_abc.py -> build/bdist.linux-armv7l/wheel/./lammps/mliap
copying build/lib/lammps/mliap/pytorch.py -> build/bdist.linux-armv7l/wheel/./lammps/mliap
copying build/lib/lammps/mliap/loader.py -> build/bdist.linux-armv7l/wheel/./lammps/mliap
copying build/lib/lammps/mliap/mliap_unified_lj.py -> build/bdist.linux-armv7l/wheel/./lammps/mliap
copying build/lib/lammps/mliap/__init__.py -> build/bdist.linux-armv7l/wheel/./lammps/mliap
copying build/lib/lammps/pylammps.py -> build/bdist.linux-armv7l/wheel/./lammps
copying build/lib/lammps/formats.py -> build/bdist.linux-armv7l/wheel/./lammps
copying build/lib/lammps/core.py -> build/bdist.linux-armv7l/wheel/./lammps
copying build/lib/lammps/numpy_wrapper.py -> build/bdist.linux-armv7l/wheel/./lammps
copying build/lib/lammps/__init__.py -> build/bdist.linux-armv7l/wheel/./lammps
copying build/lib/lammps/constants.py -> build/bdist.linux-armv7l/wheel/./lammps
running install_egg_info
running egg_info
creating lammps.egg-info
writing lammps.egg-info/PKG-INFO
writing dependency_links to lammps.egg-info/dependency_links.txt
writing top-level names to lammps.egg-info/top_level.txt
writing manifest file 'lammps.egg-info/SOURCES.txt'
reading manifest file 'lammps.egg-info/SOURCES.txt'
writing manifest file 'lammps.egg-info/SOURCES.txt'
Copying lammps.egg-info to build/bdist.linux-armv7l/wheel/./lammps-2024.2.7.egg-info
running install_scripts
creating build/bdist.linux-armv7l/wheel/lammps-2024.2.7.dist-info/WHEEL
creating '/build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.13_lammps/.tmp-ze6ggybx/lammps-2024.2.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
adding 'lammps/__init__.py'
adding 'lammps/constants.py'
adding 'lammps/core.py'
adding 'lammps/data.py'
adding 'lammps/formats.py'
adding 'lammps/numpy_wrapper.py'
adding 'lammps/pylammps.py'
adding 'lammps/mliap/__init__.py'
adding 'lammps/mliap/loader.py'
adding 'lammps/mliap/mliap_unified_abc.py'
adding 'lammps/mliap/mliap_unified_lj.py'
adding 'lammps/mliap/pytorch.py'
adding 'lammps-2024.2.7.dist-info/METADATA'
adding 'lammps-2024.2.7.dist-info/WHEEL'
adding 'lammps-2024.2.7.dist-info/top_level.txt'
adding 'lammps-2024.2.7.dist-info/RECORD'
removing build/bdist.linux-armv7l/wheel
Successfully built lammps-2024.2.7-py3-none-any.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module
I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir
I: pybuild base:311: cd /build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.13_lammps/build; python3.13 -m unittest discover -v
ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
----------------------------------------------------------------------
Ran 0 tests in 0.000s
NO TESTS RAN
I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module
I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.12_lammps
ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
* Building wheel...
ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
running bdist_wheel
running build
running build_py
creating build/lib/lammps
copying lammps/data.py -> build/lib/lammps
copying lammps/pylammps.py -> build/lib/lammps
copying lammps/formats.py -> build/lib/lammps
copying lammps/core.py -> build/lib/lammps
copying lammps/numpy_wrapper.py -> build/lib/lammps
copying lammps/__init__.py -> build/lib/lammps
copying lammps/constants.py -> build/lib/lammps
creating build/lib/lammps/mliap
copying lammps/mliap/mliap_unified_abc.py -> build/lib/lammps/mliap
copying lammps/mliap/pytorch.py -> build/lib/lammps/mliap
copying lammps/mliap/loader.py -> build/lib/lammps/mliap
copying lammps/mliap/mliap_unified_lj.py -> build/lib/lammps/mliap
copying lammps/mliap/__init__.py -> build/lib/lammps/mliap
installing to build/bdist.linux-armv7l/wheel
running install
running install_lib
creating build/bdist.linux-armv7l/wheel
creating build/bdist.linux-armv7l/wheel/lammps
copying build/lib/lammps/data.py -> build/bdist.linux-armv7l/wheel/./lammps
creating build/bdist.linux-armv7l/wheel/lammps/mliap
copying build/lib/lammps/mliap/mliap_unified_abc.py -> build/bdist.linux-armv7l/wheel/./lammps/mliap
copying build/lib/lammps/mliap/pytorch.py -> build/bdist.linux-armv7l/wheel/./lammps/mliap
copying build/lib/lammps/mliap/loader.py -> build/bdist.linux-armv7l/wheel/./lammps/mliap
copying build/lib/lammps/mliap/mliap_unified_lj.py -> build/bdist.linux-armv7l/wheel/./lammps/mliap
copying build/lib/lammps/mliap/__init__.py -> build/bdist.linux-armv7l/wheel/./lammps/mliap
copying build/lib/lammps/pylammps.py -> build/bdist.linux-armv7l/wheel/./lammps
copying build/lib/lammps/formats.py -> build/bdist.linux-armv7l/wheel/./lammps
copying build/lib/lammps/core.py -> build/bdist.linux-armv7l/wheel/./lammps
copying build/lib/lammps/numpy_wrapper.py -> build/bdist.linux-armv7l/wheel/./lammps
copying build/lib/lammps/__init__.py -> build/bdist.linux-armv7l/wheel/./lammps
copying build/lib/lammps/constants.py -> build/bdist.linux-armv7l/wheel/./lammps
running install_egg_info
running egg_info
creating lammps.egg-info
writing lammps.egg-info/PKG-INFO
writing dependency_links to lammps.egg-info/dependency_links.txt
writing top-level names to lammps.egg-info/top_level.txt
writing manifest file 'lammps.egg-info/SOURCES.txt'
reading manifest file 'lammps.egg-info/SOURCES.txt'
writing manifest file 'lammps.egg-info/SOURCES.txt'
Copying lammps.egg-info to build/bdist.linux-armv7l/wheel/./lammps-2024.2.7.egg-info
running install_scripts
creating build/bdist.linux-armv7l/wheel/lammps-2024.2.7.dist-info/WHEEL
creating '/build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.12_lammps/.tmp-uuenzdel/lammps-2024.2.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
adding 'lammps/__init__.py'
adding 'lammps/constants.py'
adding 'lammps/core.py'
adding 'lammps/data.py'
adding 'lammps/formats.py'
adding 'lammps/numpy_wrapper.py'
adding 'lammps/pylammps.py'
adding 'lammps/mliap/__init__.py'
adding 'lammps/mliap/loader.py'
adding 'lammps/mliap/mliap_unified_abc.py'
adding 'lammps/mliap/mliap_unified_lj.py'
adding 'lammps/mliap/pytorch.py'
adding 'lammps-2024.2.7.dist-info/METADATA'
adding 'lammps-2024.2.7.dist-info/WHEEL'
adding 'lammps-2024.2.7.dist-info/top_level.txt'
adding 'lammps-2024.2.7.dist-info/RECORD'
removing build/bdist.linux-armv7l/wheel
Successfully built lammps-2024.2.7-py3-none-any.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module
I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir
I: pybuild base:311: cd /build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.12_lammps/build; python3.12 -m unittest discover -v
ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
----------------------------------------------------------------------
Ran 0 tests in 0.000s
NO TESTS RAN
make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg'
dh_install -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build
dh_installdocs -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build
debian/rules override_dh_sphinxdoc
make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg'
echo "sphinx and dh_sphinx are broken for lammps docs. See Bug#1059621"
sphinx and dh_sphinx are broken for lammps docs. See Bug#1059621
make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg'
dh_installchangelogs -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build
debian/rules override_dh_installexamples
make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg'
dh_installexamples -X.gitignore
make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg'
debian/rules override_dh_installman-arch
make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg'
sed -i 's|TH LAMMPS|TH LAMMPS \"1\"|g' /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/share/man/man1/lmp.1
dh_installman -a
make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg'
dh_installman -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build -Nlammps -Nliblammps-dev -Nliblammps0t64 -Npython3-lammps
debian/rules execute_before_dh_python3-arch
make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg'
set -e; \
cd python/examples; \
LD_LIBRARY_PATH=/build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf \
PYTHONPATH=/build/reproducible-path/lammps-20240207+dfsg/debian/python3-lammps/usr/lib/python3.12/dist-packages:${PYTHONPATH} \
python3 demo.py
ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
LAMMPS (7 Feb 2024 - Update 1)
OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98)
using 1 OpenMP thread(s) per MPI task
Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962
Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962)
1 by 1 by 1 MPI processor grid
Created 4000 atoms
using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962)
create_atoms CPU = 0.003 seconds
Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule
Neighbor list info ...
update: every = 20 steps, delay = 0 steps, check = no
max neighbors/atom: 2000, page size: 100000
master list distance cutoff = 2.8
ghost atom cutoff = 2.8
binsize = 1.4, bins = 12 12 12
1 neighbor lists, perpetual/occasional/extra = 1 0 0
(1) pair lj/cut, perpetual
attributes: half, newton on
pair build: half/bin/atomonly/newton
stencil: half/bin/3d
bin: standard
Setting up Verlet run ...
Unit style : lj
Current step : 0
Time step : 0.005
Per MPI rank memory allocation (min/avg/max) = 3.513 | 3.513 | 3.513 Mbytes
Step Temp E_pair E_mol TotEng Press
0 1.44 -6.7733681 0 -4.6139081 -5.0199732
100 0.76838481 -5.7743924 0 -4.6221033 0.13682061
Loop time of 0.856351 on 1 procs for 100 steps with 4000 atoms
Performance: 50446.578 tau/day, 116.774 timesteps/s, 467.098 katom-step/s
99.9% CPU use with 1 MPI tasks x 1 OpenMP threads
MPI task timing breakdown:
Section | min time | avg time | max time |%varavg| %total
---------------------------------------------------------------
Pair | 0.72114 | 0.72114 | 0.72114 | 0.0 | 84.21
Neigh | 0.084739 | 0.084739 | 0.084739 | 0.0 | 9.90
Comm | 0.021162 | 0.021162 | 0.021162 | 0.0 | 2.47
Output | 0.00034777 | 0.00034777 | 0.00034777 | 0.0 | 0.04
Modify | 0.023379 | 0.023379 | 0.023379 | 0.0 | 2.73
Other | | 0.005579 | | | 0.65
Nlocal: 4000 ave 4000 max 4000 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Nghost: 5758 ave 5758 max 5758 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Neighs: 150488 ave 150488 max 150488 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Total # of neighbors = 150488
Ave neighs/atom = 37.622
Neighbor list builds = 5
Dangerous builds not checked
Python output:
Natoms, mass, x[0][0] coord = 4000 1.0 16.651271530416228
Temperature from compute = 0.7683848148006243
Energy from equal-style variable = -5.774392400140558
Velocity component from atom-style variable = -0.16696430269966717
Volume from get_thermo = 4738.213693437576
Natoms from get_natoms = 4000
Global coords from gather_atoms = 16.651271530416228 16.79001077301678 0.19047524160173676
Changed x[0][0] via scatter_atoms = 17.651271530416228
Total wall time: 0:00:00
make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg'
dh_python3 -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build
dh_installsystemduser -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build
dh_lintian -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build
dh_perl -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build
dh_link -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build
dh_strip_nondeterminism -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build
debian/rules override_dh_compress
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dh_compress -X.pdf
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/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/PACKAGES/drude/ethanol/log.27Nov18.ethanol.nh.g++.1
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/PACKAGES/drude/ethanol/log.27Nov18.ethanol.lang.g++.1
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/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/LAMMPSInterfaceCXX.cmake
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/bond_zero2.h
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/pair_zero2.cpp
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/improper_zero2.cpp
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/pair_zero2.h
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/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/fix_nve2.cpp
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/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/tersoff/in.hBN_shift
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/tersoff/hBN-monolayer-5nm.data
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/tersoff/in.tersoff
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/tersoff/log.13Jan21.hBN_shift.g++.4
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/tersoff/log.13Jan21.hBN_shift.g++.1
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/README
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/min/log.27Nov18.min.box.g++.1
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/min/in.min.box
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/min/log.27Nov18.min.g++.1
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/min/log.27Nov18.min.box.g++.4
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/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/min/in.min
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/in.snap.W.2940
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/in.snap.compute.quadratic
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/in.snap.scale.Ni_Zuo_JCPA2020
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/README.md
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/log.15Jun20.snap.InP.JCPA2020.g++.1
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/log.03Jul20.snap.compute.quadratic.g++.4
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/log.15Jun22.grid.snap.g++.4
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/log.03Jul20.snap.compute.quadratic.g++.1
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/in.snap.Ta06A
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/log.15Jun20.snap.W.2940.g++.1
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/log.30May23.C_SNAP.g++.4
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/in.snap.WBe.PRB2019
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/log.15Jun20.snap.hybrid.WSNAP.HePair.g++.1
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/log.15Jun22.grid.tri.g++.4
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/log.15Jun22.grid.snap.g++.1
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/in.snap.compute
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/log.03Jul20.snap.compute.g++.1
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/in.grid.snap
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/in.snap.hybrid.WSNAP.HePair
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/log.15Jun22.grid.tri.g++.1
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/log.15Jun20.snap.Mo_Chen.g++.4
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/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/compute_snap_dgrad.py
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/log.15Jun20.snap.hybrid.WSNAP.HePair.g++.4
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/in.C_SNAP
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/log.15Jun20.snap.Mo_Chen.g++.1
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/in.grid.tri
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/log.30May23.C_SNAP.g++.1
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/log.15Jun20.snap.Ta06A.g++.4
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/log.03Jul20.snap.compute.g++.4
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/in.snap.Mo_Chen
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/log.15Jun20.snap.W.2940.g++.4
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/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/snap/in.snap.InP.JCPA2020
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/shear/log.27Nov18.shear.g++.4
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/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/shear/in.shear.void
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/shear/Ni_u3.eam
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/shear/log.27Nov18.shear.void.g++.4
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/shear/in.shear
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/HEAT/log.10May16.spce.hex.g++.32
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/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/HEAT/data.spce
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/HEAT/log.10May16.lj.hex.g++.32
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/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/HEAT/in.lj.hex
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/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/HEAT/data.lj
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/ELASTIC/compliance.py
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/ELASTIC/potential.mod
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/ELASTIC/displace.mod
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/ELASTIC/init.mod
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/ELASTIC/in.elastic
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/ELASTIC/Si.sw
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/meam/msmeam/log.msmeam.bu
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/meam/msmeam/data.msmeam.bu
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/meam/msmeam/README.md
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/meam/msmeam/potential.mod
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/meam/msmeam/HGa.meam
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/meam/msmeam/msmeam.dump.bu
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/meam/msmeam/in.msmeam
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/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/meam/msmeam/library.msmeam
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/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/meam/log.27Nov18.meam.shear.g++.1
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/meam/in.meam.shear
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/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/meam/data.meam
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/meam/in.meam
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/friction/log.27Nov18.friction.g++.1
/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/friction/in.friction
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make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg'
dh_missing -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build
debian/rules override_dh_dwz
make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg'
dh_dwz -Xliblammps.so.0
make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg'
dh_strip -a -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build
dh_makeshlibs -a -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build
dh_shlibdeps -a -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-armhf.so.3
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/liblammps0t64/usr/lib/arm-linux-gnueabihf/liblammps.so.0 found in none of the libraries
dh_installdeb -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build
dh_gencontrol -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build
dpkg-gencontrol: warning: Depends field of package lammps-doc: substitution variable ${sphinxdoc:Depends} used, but is not defined
dpkg-gencontrol: warning: Depends field of package python3-lammps: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: Depends field of package liblammps-dev: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: package lammps-examples: substitution variable ${perl:Depends} unused, but is defined
dh_md5sums -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build
dh_builddeb -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build
dpkg-deb: building package 'liblammps0t64' in '../liblammps0t64_20240207+dfsg-3_armhf.deb'.
dpkg-deb: building package 'lammps' in '../lammps_20240207+dfsg-3_armhf.deb'.
dpkg-deb: building package 'lammps-doc' in '../lammps-doc_20240207+dfsg-3_all.deb'.
dpkg-deb: building package 'lammps-dbgsym' in '../lammps-dbgsym_20240207+dfsg-3_armhf.deb'.
dpkg-deb: building package 'liblammps-dev' in '../liblammps-dev_20240207+dfsg-3_armhf.deb'.
dpkg-deb: building package 'liblammps0t64-dbgsym' in '../liblammps0t64-dbgsym_20240207+dfsg-3_armhf.deb'.
dpkg-deb: building package 'lammps-data' in '../lammps-data_20240207+dfsg-3_all.deb'.
dpkg-deb: building package 'python3-lammps' in '../python3-lammps_20240207+dfsg-3_armhf.deb'.
dpkg-deb: building package 'lammps-examples' in '../lammps-examples_20240207+dfsg-3_all.deb'.
dpkg-genbuildinfo --build=binary -O../lammps_20240207+dfsg-3_armhf.buildinfo
dpkg-genchanges --build=binary -O../lammps_20240207+dfsg-3_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/27840/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/27840/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/27840 and its subdirectories
I: Current time: Sun Dec 29 03:52:31 +14 2024
I: pbuilder-time-stamp: 1735393951