I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 3 07:19:29 +14 2024 I: pbuilder-time-stamp: 1733159969 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [hts-nim-tools_0.2.1-2.dsc] I: copying [./hts-nim-tools_0.2.1.orig.tar.gz] I: copying [./hts-nim-tools_0.2.1-2.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Dec 2 09:30:54 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./hts-nim-tools_0.2.1-2.dsc: no acceptable signature found dpkg-source: info: extracting hts-nim-tools in hts-nim-tools-0.2.1 dpkg-source: info: unpacking hts-nim-tools_0.2.1.orig.tar.gz dpkg-source: info: unpacking hts-nim-tools_0.2.1-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/9620/tmp/hooks/D01_modify_environment starting debug: Running on ff4a. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 2 17:19 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/9620/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/9620/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=c5ba9ccb3c0f47e2b8364544296056cf LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=9620 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1wwG2WK4/pbuilderrc_XdP0 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1wwG2WK4/b2 --logfile b2/build.log hts-nim-tools_0.2.1-2.dsc' SUDO_GID=113 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:3142/ I: uname -a Linux i-capture-the-hostname 6.1.0-28-armmp-lpae #1 SMP Debian 6.1.119-1 (2024-11-22) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/9620/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), nim, nim-hts-dev, nim-docopt-dev, nim-unicodedb-dev, nim-unicodeplus-dev, nim-regex-dev, nim-kexpr-dev, nim-lapper-dev, help2man, libhts-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19684 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on nim; however: Package nim is not installed. pbuilder-satisfydepends-dummy depends on nim-hts-dev; however: Package nim-hts-dev is not installed. pbuilder-satisfydepends-dummy depends on nim-docopt-dev; however: Package nim-docopt-dev is not installed. pbuilder-satisfydepends-dummy depends on nim-unicodedb-dev; however: Package nim-unicodedb-dev is not installed. pbuilder-satisfydepends-dummy depends on nim-unicodeplus-dev; however: Package nim-unicodeplus-dev is not installed. pbuilder-satisfydepends-dummy depends on nim-regex-dev; however: Package nim-regex-dev is not installed. pbuilder-satisfydepends-dummy depends on nim-kexpr-dev; however: Package nim-kexpr-dev is not installed. pbuilder-satisfydepends-dummy depends on nim-lapper-dev; however: Package nim-lapper-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-2.5-0{a} libldap-dev{a} liblocale-gettext-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libpcre3{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} nim{a} nim-docopt-dev{a} nim-hts-dev{a} nim-kexpr-dev{a} nim-lapper-dev{a} nim-regex-dev{a} nim-unicodedb-dev{a} nim-unicodeplus-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl git krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 99 newly installed, 0 to remove and 0 not upgraded. Need to get 40.2 MB of archives. After unpacking 131 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf liblocale-gettext-perl armhf 1.07-7+b1 [14.7 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.2-11 [83.6 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 13 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3 [493 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf autopoint all 0.22.5-2 [723 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.2~rc1-1 [22.8 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf comerr-dev armhf 2.1-1.47.2~rc1-1 [54.8 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-8 [517 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 25 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-5+b1 [9088 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf debhelper all 13.20 [915 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf help2man armhf 1.49.3 [198 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 37 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf libgssrpc4t64 armhf 1.21.3-3 [52.5 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf libkadm5clnt-mit12 armhf 1.21.3-3 [37.0 kB] Get: 41 http://deb.debian.org/debian unstable/main armhf libkdb5-10t64 armhf 1.21.3-3 [37.1 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf libkadm5srv-mit12 armhf 1.21.3-3 [46.7 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf krb5-multidev armhf 1.21.3-3 [126 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB] Get: 45 http://deb.debian.org/debian unstable/main armhf libbrotli-dev armhf 1.1.0-2+b6 [293 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf libbz2-dev armhf 1.0.8-6 [28.7 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8 [18.2 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8 [50.2 kB] Get: 49 http://deb.debian.org/debian unstable/main armhf libldap-2.5-0 armhf 2.5.18+dfsg-3+b1 [163 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf libnghttp3-9 armhf 1.6.0-2 [56.8 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf libngtcp2-16 armhf 1.9.1-1 [115 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf libngtcp2-crypto-gnutls8 armhf 1.9.1-1 [15.8 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB] Get: 56 http://deb.debian.org/debian unstable/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf libcurl3t64-gnutls armhf 8.11.0-1 [310 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf libevent-2.1-7t64 armhf 2.1.12-stable-10+b1 [164 kB] Get: 59 http://deb.debian.org/debian unstable/main armhf libunbound8 armhf 1.22.0-1 [539 kB] Get: 60 http://deb.debian.org/debian unstable/main armhf libgnutls-dane0t64 armhf 3.8.8-2 [440 kB] Get: 61 http://deb.debian.org/debian unstable/main armhf libgnutls-openssl27t64 armhf 3.8.8-2 [440 kB] Get: 62 http://deb.debian.org/debian unstable/main armhf libidn2-dev armhf 2.3.7-2+b1 [119 kB] Get: 63 http://deb.debian.org/debian unstable/main armhf libp11-kit-dev armhf 0.25.5-2+b1 [208 kB] Get: 64 http://deb.debian.org/debian unstable/main armhf libtasn1-6-dev armhf 4.19.0-3+b3 [93.2 kB] Get: 65 http://deb.debian.org/debian unstable/main armhf libgmpxx4ldbl armhf 2:6.3.0+dfsg-2+b2 [328 kB] Get: 66 http://deb.debian.org/debian unstable/main armhf libgmp-dev armhf 2:6.3.0+dfsg-2+b2 [593 kB] Get: 67 http://deb.debian.org/debian unstable/main armhf nettle-dev armhf 3.10-1+b1 [1313 kB] Get: 68 http://deb.debian.org/debian unstable/main armhf libgnutls28-dev armhf 3.8.8-2 [1328 kB] Get: 69 http://deb.debian.org/debian unstable/main armhf libkrb5-dev armhf 1.21.3-3 [15.8 kB] Get: 70 http://deb.debian.org/debian unstable/main armhf libldap-dev armhf 2.5.18+dfsg-3+b1 [282 kB] Get: 71 http://deb.debian.org/debian unstable/main armhf libpkgconf3 armhf 1.8.1-4 [31.8 kB] Get: 72 http://deb.debian.org/debian unstable/main armhf pkgconf-bin armhf 1.8.1-4 [29.2 kB] Get: 73 http://deb.debian.org/debian unstable/main armhf pkgconf armhf 1.8.1-4 [26.1 kB] Get: 74 http://deb.debian.org/debian unstable/main armhf libnghttp2-dev armhf 1.64.0-1 [103 kB] Get: 75 http://deb.debian.org/debian unstable/main armhf libnghttp3-dev armhf 1.6.0-2 [81.8 kB] Get: 76 http://deb.debian.org/debian unstable/main armhf libngtcp2-crypto-gnutls-dev armhf 1.9.1-1 [21.3 kB] Get: 77 http://deb.debian.org/debian unstable/main armhf libngtcp2-dev armhf 1.9.1-1 [165 kB] Get: 78 http://deb.debian.org/debian unstable/main armhf libpsl-dev armhf 0.21.2-1.1+b1 [76.8 kB] Get: 79 http://deb.debian.org/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Get: 80 http://deb.debian.org/debian unstable/main armhf librtmp-dev armhf 2.4+20151223.gitfa8646d.1-2+b5 [63.6 kB] Get: 81 http://deb.debian.org/debian unstable/main armhf libssl-dev armhf 3.3.2-2 [2385 kB] Get: 82 http://deb.debian.org/debian unstable/main armhf libssh2-1-dev armhf 1.11.1-1 [378 kB] Get: 83 http://deb.debian.org/debian unstable/main armhf libzstd-dev armhf 1.5.6+dfsg-1+b1 [327 kB] Get: 84 http://deb.debian.org/debian unstable/main armhf libcurl4-gnutls-dev armhf 8.11.0-1 [434 kB] Get: 85 http://deb.debian.org/debian unstable/main armhf libdeflate0 armhf 1.22-1 [36.3 kB] Get: 86 http://deb.debian.org/debian unstable/main armhf libdeflate-dev armhf 1.22-1 [44.5 kB] Get: 87 http://deb.debian.org/debian unstable/main armhf libhtscodecs2 armhf 1.6.1-1 [63.1 kB] Get: 88 http://deb.debian.org/debian unstable/main armhf libhts3t64 armhf 1.20+ds-2 [401 kB] Get: 89 http://deb.debian.org/debian unstable/main armhf liblzma-dev armhf 5.6.3-1+b1 [304 kB] Get: 90 http://deb.debian.org/debian unstable/main armhf libhts-dev armhf 1.20+ds-2 [1625 kB] Get: 91 http://deb.debian.org/debian unstable/main armhf libpcre3 armhf 2:8.39-15.1 [320 kB] Get: 92 http://deb.debian.org/debian unstable/main armhf nim armhf 1.6.14-3 [4012 kB] Get: 93 http://deb.debian.org/debian unstable/main armhf nim-unicodedb-dev all 0.9.0-2 [423 kB] Get: 94 http://deb.debian.org/debian unstable/main armhf nim-unicodeplus-dev all 0.5.1-2 [5340 B] Get: 95 http://deb.debian.org/debian unstable/main armhf nim-regex-dev all 0.17.0+ds-2 [41.2 kB] Get: 96 http://deb.debian.org/debian unstable/main armhf nim-docopt-dev all 0.6.8-3 [10.6 kB] Get: 97 http://deb.debian.org/debian unstable/main armhf nim-hts-dev all 0.3.25+ds-1 [36.3 kB] Get: 98 http://deb.debian.org/debian unstable/main armhf nim-kexpr-dev all 0.0.2-3 [7976 B] Get: 99 http://deb.debian.org/debian unstable/main armhf nim-lapper-dev all 0.1.7-5 [7356 B] Fetched 40.2 MB in 3s (12.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19684 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_armhf.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.22.5-2_armhf.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-5_armhf.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. 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Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../33-libkrb5support0_1.21.3-3_armhf.deb ... Unpacking libkrb5support0:armhf (1.21.3-3) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../34-libk5crypto3_1.21.3-3_armhf.deb ... Unpacking libk5crypto3:armhf (1.21.3-3) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../35-libkeyutils1_1.6.3-4_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-4) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../36-libkrb5-3_1.21.3-3_armhf.deb ... Unpacking libkrb5-3:armhf (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../37-libgssapi-krb5-2_1.21.3-3_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.21.3-3) ... Selecting previously unselected package libgssrpc4t64:armhf. Preparing to unpack .../38-libgssrpc4t64_1.21.3-3_armhf.deb ... 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Unpacking libnghttp2-14:armhf (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:armhf. Preparing to unpack .../50-libnghttp3-9_1.6.0-2_armhf.deb ... Unpacking libnghttp3-9:armhf (1.6.0-2) ... Selecting previously unselected package libngtcp2-16:armhf. Preparing to unpack .../51-libngtcp2-16_1.9.1-1_armhf.deb ... Unpacking libngtcp2-16:armhf (1.9.1-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:armhf. Preparing to unpack .../52-libngtcp2-crypto-gnutls8_1.9.1-1_armhf.deb ... Unpacking libngtcp2-crypto-gnutls8:armhf (1.9.1-1) ... Selecting previously unselected package libpsl5t64:armhf. Preparing to unpack .../53-libpsl5t64_0.21.2-1.1+b1_armhf.deb ... Unpacking libpsl5t64:armhf (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../54-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:armhf. Preparing to unpack .../55-libssh2-1t64_1.11.1-1_armhf.deb ... Unpacking libssh2-1t64:armhf (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:armhf. Preparing to unpack .../56-libcurl3t64-gnutls_8.11.0-1_armhf.deb ... Unpacking libcurl3t64-gnutls:armhf (8.11.0-1) ... Selecting previously unselected package libevent-2.1-7t64:armhf. Preparing to unpack .../57-libevent-2.1-7t64_2.1.12-stable-10+b1_armhf.deb ... Unpacking libevent-2.1-7t64:armhf (2.1.12-stable-10+b1) ... Selecting previously unselected package libunbound8:armhf. Preparing to unpack .../58-libunbound8_1.22.0-1_armhf.deb ... Unpacking libunbound8:armhf (1.22.0-1) ... Selecting previously unselected package libgnutls-dane0t64:armhf. Preparing to unpack .../59-libgnutls-dane0t64_3.8.8-2_armhf.deb ... Unpacking libgnutls-dane0t64:armhf (3.8.8-2) ... Selecting previously unselected package libgnutls-openssl27t64:armhf. Preparing to unpack .../60-libgnutls-openssl27t64_3.8.8-2_armhf.deb ... Unpacking libgnutls-openssl27t64:armhf (3.8.8-2) ... Selecting previously unselected package libidn2-dev:armhf. Preparing to unpack .../61-libidn2-dev_2.3.7-2+b1_armhf.deb ... Unpacking libidn2-dev:armhf (2.3.7-2+b1) ... Selecting previously unselected package libp11-kit-dev:armhf. Preparing to unpack .../62-libp11-kit-dev_0.25.5-2+b1_armhf.deb ... Unpacking libp11-kit-dev:armhf (0.25.5-2+b1) ... Selecting previously unselected package libtasn1-6-dev:armhf. Preparing to unpack .../63-libtasn1-6-dev_4.19.0-3+b3_armhf.deb ... Unpacking libtasn1-6-dev:armhf (4.19.0-3+b3) ... Selecting previously unselected package libgmpxx4ldbl:armhf. Preparing to unpack .../64-libgmpxx4ldbl_2%3a6.3.0+dfsg-2+b2_armhf.deb ... Unpacking libgmpxx4ldbl:armhf (2:6.3.0+dfsg-2+b2) ... Selecting previously unselected package libgmp-dev:armhf. Preparing to unpack .../65-libgmp-dev_2%3a6.3.0+dfsg-2+b2_armhf.deb ... 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Selecting previously unselected package libpsl-dev:armhf. Preparing to unpack .../77-libpsl-dev_0.21.2-1.1+b1_armhf.deb ... Unpacking libpsl-dev:armhf (0.21.2-1.1+b1) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../78-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package librtmp-dev:armhf. Preparing to unpack .../79-librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5_armhf.deb ... Unpacking librtmp-dev:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssl-dev:armhf. Preparing to unpack .../80-libssl-dev_3.3.2-2_armhf.deb ... Unpacking libssl-dev:armhf (3.3.2-2) ... Selecting previously unselected package libssh2-1-dev:armhf. Preparing to unpack .../81-libssh2-1-dev_1.11.1-1_armhf.deb ... Unpacking libssh2-1-dev:armhf (1.11.1-1) ... Selecting previously unselected package libzstd-dev:armhf. Preparing to unpack .../82-libzstd-dev_1.5.6+dfsg-1+b1_armhf.deb ... Unpacking libzstd-dev:armhf (1.5.6+dfsg-1+b1) ... Selecting previously unselected package libcurl4-gnutls-dev:armhf. Preparing to unpack .../83-libcurl4-gnutls-dev_8.11.0-1_armhf.deb ... Unpacking libcurl4-gnutls-dev:armhf (8.11.0-1) ... Selecting previously unselected package libdeflate0:armhf. Preparing to unpack .../84-libdeflate0_1.22-1_armhf.deb ... Unpacking libdeflate0:armhf (1.22-1) ... Selecting previously unselected package libdeflate-dev:armhf. Preparing to unpack .../85-libdeflate-dev_1.22-1_armhf.deb ... Unpacking libdeflate-dev:armhf (1.22-1) ... Selecting previously unselected package libhtscodecs2:armhf. Preparing to unpack .../86-libhtscodecs2_1.6.1-1_armhf.deb ... Unpacking libhtscodecs2:armhf (1.6.1-1) ... Selecting previously unselected package libhts3t64:armhf. Preparing to unpack .../87-libhts3t64_1.20+ds-2_armhf.deb ... Unpacking libhts3t64:armhf (1.20+ds-2) ... Selecting previously unselected package liblzma-dev:armhf. Preparing to unpack .../88-liblzma-dev_5.6.3-1+b1_armhf.deb ... Unpacking liblzma-dev:armhf (5.6.3-1+b1) ... Selecting previously unselected package libhts-dev:armhf. Preparing to unpack .../89-libhts-dev_1.20+ds-2_armhf.deb ... Unpacking libhts-dev:armhf (1.20+ds-2) ... Selecting previously unselected package libpcre3:armhf. Preparing to unpack .../90-libpcre3_2%3a8.39-15.1_armhf.deb ... Unpacking libpcre3:armhf (2:8.39-15.1) ... Selecting previously unselected package nim. Preparing to unpack .../91-nim_1.6.14-3_armhf.deb ... Unpacking nim (1.6.14-3) ... Selecting previously unselected package nim-unicodedb-dev. Preparing to unpack .../92-nim-unicodedb-dev_0.9.0-2_all.deb ... Unpacking nim-unicodedb-dev (0.9.0-2) ... Selecting previously unselected package nim-unicodeplus-dev. Preparing to unpack .../93-nim-unicodeplus-dev_0.5.1-2_all.deb ... Unpacking nim-unicodeplus-dev (0.5.1-2) ... 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Setting up libicu72:armhf (72.1-5+b1) ... Setting up libzstd-dev:armhf (1.5.6+dfsg-1+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up nim-lapper-dev (0.1.7-5) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:armhf (1.1.0-2+b6) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up libpsl5t64:armhf (0.21.2-1.1+b1) ... Setting up libnghttp2-14:armhf (1.64.0-1) ... Setting up nim-unicodedb-dev (0.9.0-2) ... Setting up libdeflate0:armhf (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libevent-2.1-7t64:armhf (2.1.12-stable-10+b1) ... Setting up libcom-err2:armhf (1.47.2~rc1-1) ... Setting up file (1:5.45-3+b1) ... Setting up nim-kexpr-dev (0.0.2-3) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up libpsl-dev:armhf (0.21.2-1.1+b1) ... Setting up libkrb5support0:armhf (1.21.3-3) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-8) ... Setting up libpcre3:armhf (2:8.39-15.1) ... Setting up autotools-dev (20220109.1) ... Setting up libunbound8:armhf (1.22.0-1) ... Setting up libpkgconf3:armhf (1.8.1-4) ... Setting up libgmpxx4ldbl:armhf (2:6.3.0+dfsg-2+b2) ... Setting up libgnutls-dane0t64:armhf (3.8.8-2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up comerr-dev:armhf (2.1-1.47.2~rc1-1) ... Setting up libssl-dev:armhf (3.3.2-2) ... Setting up autopoint (0.22.5-2) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:armhf (1.21.3-3) ... Setting up libidn2-dev:armhf (2.3.7-2+b1) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:armhf (1.6.0-2) ... Setting up libnghttp3-dev:armhf (1.6.0-2) ... Setting up liblzma-dev:armhf (5.6.3-1+b1) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up libngtcp2-16:armhf (1.9.1-1) ... Setting up nim (1.6.14-3) ... Setting up libkrb5-3:armhf (1.21.3-3) ... Setting up libssh2-1t64:armhf (1.11.1-1) ... Setting up libtasn1-6-dev:armhf (4.19.0-3+b3) ... Setting up libdeflate-dev:armhf (1.22-1) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up libbrotli-dev:armhf (1.1.0-2+b6) ... Setting up libngtcp2-crypto-gnutls8:armhf (1.9.1-1) ... Setting up libp11-kit-dev:armhf (0.25.5-2+b1) ... Setting up libbz2-dev:armhf (1.0.8-6) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up nim-unicodeplus-dev (0.5.1-2) ... Setting up gettext (0.22.5-2) ... Setting up libgmp-dev:armhf (2:6.3.0+dfsg-2+b2) ... Setting up nettle-dev:armhf (3.10-1+b1) ... Setting up libtool (2.4.7-8) ... Setting up libngtcp2-crypto-gnutls-dev:armhf (1.9.1-1) ... Setting up libngtcp2-dev:armhf (1.9.1-1) ... Setting up libldap-2.5-0:armhf (2.5.18+dfsg-3+b1) ... Setting up pkgconf:armhf (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up nim-hts-dev (0.3.25+ds-1) ... Setting up nim-regex-dev (0.17.0+ds-2) ... Setting up libldap-dev:armhf (2.5.18+dfsg-3+b1) ... Setting up libgssapi-krb5-2:armhf (1.21.3-3) ... Setting up libssh2-1-dev:armhf (1.11.1-1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up nim-docopt-dev (0.6.8-3) ... Setting up libgnutls28-dev:armhf (3.8.8-2) ... Setting up libnghttp2-dev:armhf (1.64.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3t64-gnutls:armhf (8.11.0-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgssrpc4t64:armhf (1.21.3-3) ... Setting up librtmp-dev:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libhts3t64:armhf (1.20+ds-2) ... Setting up libkadm5clnt-mit12:armhf (1.21.3-3) ... Setting up libkdb5-10t64:armhf (1.21.3-3) ... Setting up debhelper (13.20) ... Setting up libkadm5srv-mit12:armhf (1.21.3-3) ... Setting up krb5-multidev:armhf (1.21.3-3) ... Setting up libkrb5-dev:armhf (1.21.3-3) ... Setting up libcurl4-gnutls-dev:armhf (8.11.0-1) ... Setting up libhts-dev:armhf (1.20+ds-2) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/9620/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/9620/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/hts-nim-tools-0.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../hts-nim-tools_0.2.1-2_source.changes dpkg-buildpackage: info: source package hts-nim-tools dpkg-buildpackage: info: source version 0.2.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/hts-nim-tools-0.2.1' rm -f src/version src/vcf_check src/bam_filter src/hts_nim_tools src/count_reads src/copy_number_sampler rm -rf /build/reproducible-path/hts-nim-tools-0.2.1/nimcache rm -rf bin make[1]: Leaving directory '/build/reproducible-path/hts-nim-tools-0.2.1' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/hts-nim-tools.substvars debian/files rm -fr -- debian/hts-nim-tools/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/hts-nim-tools-0.2.1' #nim c --nimcache:/build/reproducible-path/hts-nim-tools-0.2.1/nimcache -p:/usr/share/nimble/unicodeplus -p:/usr/share/nimble/unicodedb -p:/usr/share/nimble/regex -p:/usr/share/nimble/docopt -p:/usr/share/nimble/hts src/vcf_check.nim #nim c --nimcache:/build/reproducible-path/hts-nim-tools-0.2.1/nimcache -p:/usr/share/nimble/unicodeplus -p:/usr/share/nimble/unicodedb -p:/usr/share/nimble/regex -p:/usr/share/nimble/docopt -p:/usr/share/nimble/kexpr -p:/usr/share/nimble/hts src/bam_filter.nim #nim c --nimcache:/build/reproducible-path/hts-nim-tools-0.2.1/nimcache -p:/usr/share/nimble/unicodeplus -p:/usr/share/nimble/unicodedb -p:/usr/share/nimble/regex -p:/usr/share/nimble/docopt -p:/usr/share/nimble/lapper -p:/usr/share/nimble/hts src/count_reads.nim #nim c --nimcache:/build/reproducible-path/hts-nim-tools-0.2.1/nimcache -p:/usr/share/nimble/unicodeplus -p:/usr/share/nimble/unicodedb -p:/usr/share/nimble/regex -p:/usr/share/nimble/docopt -p:/usr/share/nimble/lapper -p:/usr/lib/nim/pure -p:/usr/share/nimble/hts src/copy_number_sampler.nim nim c --passC:"-Wno-incompatible-pointer-types" --debuginfo:on --nimcache:/build/reproducible-path/hts-nim-tools-0.2.1/nimcache --out:bin/hts-nim-tools -p:/usr/share/nimble/unicodeplus -p:/usr/share/nimble/unicodedb -p:/usr/share/nimble/regex -p:/usr/share/nimble/docopt -p:/usr/share/nimble/lapper -p:/usr/share/nimble/kexpr -p:/usr/lib/nim/pure -p:/usr/share/nimble/hts src/hts_nim_tools.nim Hint: used config file '/etc/nim/nim.cfg' [Conf] Hint: used config file '/etc/nim/config.nims' [Conf] ......................................................................................................................................... /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(1, 8) Hint: duplicate import of 'os'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(1, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(2, 8) Hint: duplicate import of 'hts'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(2, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(3, 8) Hint: duplicate import of 'sequtils'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(3, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(4, 8) Hint: duplicate import of 'strutils'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(4, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(5, 8) Hint: duplicate import of 'tables'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(5, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(6, 8) Hint: duplicate import of 'algorithm'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(6, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(7, 8) Hint: duplicate import of 'docopt'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(7, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(8, 8) Hint: duplicate import of 'kexpr'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(8, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(10, 8) Hint: duplicate import of 'version'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(10, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(92, 19) template/generic instantiation of `tag` from here /usr/share/nimble/hts/hts/bam/auxtags.nim(53, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(96, 19) template/generic instantiation of `tag` from here /usr/share/nimble/hts/hts/bam/auxtags.nim(58, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(53, 13) Warning: implicit conversion to 'cstring' from a non-const location: $args[""]; this will become a compile time error in the future [CStringConv] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(94, 42) Warning: implicit conversion to 'cstring' from a non-const location: "tag_" & itag; this will become a compile time error in the future [CStringConv] /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(98, 43) Warning: implicit conversion to 'cstring' from a non-const location: "tag_" & itag; this will become a compile time error in the future [CStringConv] . /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(1, 8) Hint: duplicate import of 'os'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(1, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(2, 8) Hint: duplicate import of 'hts'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(2, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(3, 8) Hint: duplicate import of 'docopt'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(7, 8) [DuplicateModuleImport] . /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(5, 8) Hint: duplicate import of 'strutils'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(4, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(6, 8) Hint: duplicate import of 'tables'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(5, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(7, 8) Hint: duplicate import of 'algorithm'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(6, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(9, 8) Hint: duplicate import of 'version'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/bam_filter.nim(10, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(116, 13) Warning: implicit conversion to 'cstring' from a non-const location: $args[""]; this will become a compile time error in the future [CStringConv] . /build/reproducible-path/hts-nim-tools-0.2.1/src/vcf_check.nim(1, 8) Hint: duplicate import of 'os'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(1, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/vcf_check.nim(2, 8) Hint: duplicate import of 'hts'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(2, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/vcf_check.nim(3, 8) Hint: duplicate import of 'docopt'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(3, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/vcf_check.nim(4, 8) Hint: duplicate import of 'strutils'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(5, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/vcf_check.nim(6, 8) Hint: duplicate import of 'version'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(9, 8) [DuplicateModuleImport] . /build/reproducible-path/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(1, 8) Hint: duplicate import of 'os'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/vcf_check.nim(1, 8) [DuplicateModuleImport] .... /build/reproducible-path/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(3, 8) Hint: duplicate import of 'hts'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/vcf_check.nim(2, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(4, 8) Hint: duplicate import of 'docopt'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/vcf_check.nim(3, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(5, 8) Hint: duplicate import of 'lapper'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(4, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(6, 8) Hint: duplicate import of 'strutils'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/vcf_check.nim(4, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(7, 8) Hint: duplicate import of 'tables'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(6, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(8, 8) Hint: duplicate import of 'algorithm'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/count_reads.nim(7, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(10, 8) Hint: duplicate import of 'version'; previous import here: /build/reproducible-path/hts-nim-tools-0.2.1/src/vcf_check.nim(6, 8) [DuplicateModuleImport] /build/reproducible-path/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(130, 13) Warning: implicit conversion to 'cstring' from a non-const location: $args[""]; this will become a compile time error in the future [CStringConv] CC: kexpr-c CC: ../../../../usr/lib/nim/lib/std/private/digitsutils.nim CC: ../../../../usr/lib/nim/lib/system/assertions.nim CC: ../../../../usr/lib/nim/lib/system/formatfloat.nim CC: ../../../../usr/lib/nim/lib/system/dollars.nim CC: ../../../../usr/lib/nim/lib/system/io.nim CC: ../../../../usr/lib/nim/lib/system.nim CC: ../../../../usr/lib/nim/lib/pure/parseutils.nim CC: ../../../../usr/lib/nim/lib/pure/bitops.nim CC: ../../../../usr/lib/nim/lib/pure/math.nim CC: ../../../../usr/lib/nim/lib/pure/algorithm.nim CC: ../../../../usr/lib/nim/lib/pure/unicode.nim CC: ../../../../usr/lib/nim/lib/pure/strutils.nim CC: ../../../../usr/lib/nim/lib/pure/times.nim CC: ../../../../usr/lib/nim/lib/pure/os.nim CC: ../../../../usr/share/nimble/hts/hts/private/hts_concat.nim CC: ../../../../usr/lib/nim/lib/pure/strformat.nim CC: ../../../../usr/share/nimble/hts/hts/bam.nim CC: ../../../../usr/lib/nim/lib/pure/collections/sequtils.nim CC: ../../../../usr/share/nimble/hts/hts/vcf.nim CC: ../../../../usr/share/nimble/hts/hts.nim CC: ../../../../usr/lib/nim/lib/pure/hashes.nim CC: ../../../../usr/lib/nim/lib/pure/collections/tables.nim CC: ../../../../usr/lib/nim/lib/pure/collections/sets.nim CC: ../../../../usr/share/nimble/unicodedb/unicodedb/properties_data.nim CC: ../../../../usr/share/nimble/unicodedb/unicodedb/properties.nim CC: ../../../../usr/share/nimble/regex/regex/common.nim CC: ../../../../usr/share/nimble/regex/regex/nodetype.nim CC: ../../../../usr/share/nimble/regex/regex/exptransformation.nim CC: ../../../../usr/share/nimble/regex/regex/nfa.nim CC: ../../../../usr/share/nimble/unicodedb/unicodedb/types_data.nim CC: ../../../../usr/share/nimble/unicodedb/unicodedb/types.nim CC: ../../../../usr/share/nimble/unicodeplus/unicodeplus.nim CC: ../../../../usr/share/nimble/regex/regex/nodematch.nim CC: ../../../../usr/share/nimble/regex/regex/litopt.nim CC: ../../../../usr/share/nimble/regex/regex/nfatype.nim CC: ../../../../usr/share/nimble/regex/regex/nfafindall.nim CC: ../../../../usr/share/nimble/regex/regex/nfamatch.nim CC: ../../../../usr/share/nimble/docopt/docopt/util.nim CC: ../../../../usr/share/nimble/docopt/docopt.nim CC: ../../../../usr/share/nimble/kexpr/kexpr.nim CC: version.nim CC: ../../../../usr/share/nimble/lapper/lapper.nim CC: ../../../../usr/lib/nim/lib/std/sysrand.nim CC: ../../../../usr/lib/nim/lib/pure/random.nim CC: hts_nim_tools.nim Hint: [Link] Hint: gc: refc; opt: none (DEBUG BUILD, `-d:release` generates faster code) 88485 lines; 22.336s; 118.965MiB peakmem; proj: /build/reproducible-path/hts-nim-tools-0.2.1/src/hts_nim_tools.nim; out: /build/reproducible-path/hts-nim-tools-0.2.1/bin/hts-nim-tools [SuccessX] help2man --no-info --no-discard-stderr --help-option="-h" ./bin/hts-nim-tools > debian/hts-nim-tools.1 make[1]: Leaving directory '/build/reproducible-path/hts-nim-tools-0.2.1' create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/hts-nim-tools.substvars rm -fr -- debian/.debhelper/generated/hts-nim-tools/ debian/hts-nim-tools/ debian/tmp/ dh_installdirs install -m0755 -d debian/hts-nim-tools/usr/bin dh_auto_install --destdir=debian/hts-nim-tools/ install -m0755 -d /build/reproducible-path/hts-nim-tools-0.2.1/debian/hts-nim-tools dh_install install -m0755 -d debian/hts-nim-tools/usr/bin/ cp --reflink=auto -a ./bin/hts-nim-tools debian/hts-nim-tools/usr/bin// dh_installdocs install -m0755 -d debian/hts-nim-tools/usr/share/doc/hts-nim-tools install -p -m0644 debian/copyright debian/hts-nim-tools/usr/share/doc/hts-nim-tools/copyright dh_installchangelogs install -m0755 -d debian/hts-nim-tools/usr/share/doc/hts-nim-tools install -p -m0644 debian/.debhelper/generated/hts-nim-tools/dh_installchangelogs.dch.trimmed debian/hts-nim-tools/usr/share/doc/hts-nim-tools/changelog.Debian dh_installman install -m0755 -d debian/hts-nim-tools/usr/share/man/man1/ install -p -m0644 ./debian/hts-nim-tools.1 debian/hts-nim-tools/usr/share/man/man1/hts-nim-tools.1 man-recode --to-code UTF-8 --suffix .dh-new debian/hts-nim-tools/usr/share/man/man1/hts-nim-tools.1 mv debian/hts-nim-tools/usr/share/man/man1/hts-nim-tools.1.dh-new debian/hts-nim-tools/usr/share/man/man1/hts-nim-tools.1 chmod 0644 -- debian/hts-nim-tools/usr/share/man/man1/hts-nim-tools.1 dh_lintian install -m0755 -d debian/hts-nim-tools/usr/share/lintian/overrides install -p -m0644 debian/lintian-overrides debian/hts-nim-tools/usr/share/lintian/overrides/hts-nim-tools dh_perl dh_link install -m0755 -d debian/hts-nim-tools/usr/bin rm -f debian/hts-nim-tools/usr/bin/hts_nim_tools ln -s hts-nim-tools debian/hts-nim-tools/usr/bin/hts_nim_tools dh_strip_nondeterminism dh_compress cd debian/hts-nim-tools chmod a-x usr/share/doc/hts-nim-tools/changelog.Debian usr/share/man/man1/hts-nim-tools.1 gzip -9nf usr/share/doc/hts-nim-tools/changelog.Debian usr/share/man/man1/hts-nim-tools.1 cd '/build/reproducible-path/hts-nim-tools-0.2.1' dh_fixperms find debian/hts-nim-tools ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/hts-nim-tools/usr/share/doc -type f -a -true -a ! -regex 'debian/hts-nim-tools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/hts-nim-tools/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/hts-nim-tools/usr/share/man debian/hts-nim-tools/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/hts-nim-tools -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/hts-nim-tools/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing debian/rules override_dh_dwz make[1]: Entering directory '/build/reproducible-path/hts-nim-tools-0.2.1' echo "I: not executing dwz, which fails because of Unknown DWARF DW_OP_0" I: not executing dwz, which fails because of Unknown DWARF DW_OP_0 make[1]: Leaving directory '/build/reproducible-path/hts-nim-tools-0.2.1' dh_strip -a install -m0755 -d debian/.debhelper/hts-nim-tools/dbgsym-root/usr/lib/debug/.build-id/db objcopy --only-keep-debug --compress-debug-sections debian/hts-nim-tools/usr/bin/hts-nim-tools debian/.debhelper/hts-nim-tools/dbgsym-root/usr/lib/debug/.build-id/db/460e1c9a80e83ba5bd2611204a46b336bb2929.debug chmod 0644 -- debian/.debhelper/hts-nim-tools/dbgsym-root/usr/lib/debug/.build-id/db/460e1c9a80e83ba5bd2611204a46b336bb2929.debug strip --remove-section=.comment --remove-section=.note debian/hts-nim-tools/usr/bin/hts-nim-tools objcopy --add-gnu-debuglink debian/.debhelper/hts-nim-tools/dbgsym-root/usr/lib/debug/.build-id/db/460e1c9a80e83ba5bd2611204a46b336bb2929.debug debian/hts-nim-tools/usr/bin/hts-nim-tools install -m0755 -d debian/.debhelper/hts-nim-tools/dbgsym-root/usr/share/doc ln -s hts-nim-tools debian/.debhelper/hts-nim-tools/dbgsym-root/usr/share/doc/hts-nim-tools-dbgsym install -m0755 -d debian/.debhelper/hts-nim-tools dh_makeshlibs -a rm -f debian/hts-nim-tools/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/hts-nim-tools/DEBIAN dpkg-shlibdeps -Tdebian/hts-nim-tools.substvars debian/hts-nim-tools/usr/bin/hts-nim-tools dh_installdeb install -m0755 -d debian/hts-nim-tools/DEBIAN dh_gencontrol install -m0755 -d debian/hts-nim-tools/DEBIAN echo misc:Depends= >> debian/hts-nim-tools.substvars echo misc:Pre-Depends= >> debian/hts-nim-tools.substvars install -m0755 -d debian/.debhelper/hts-nim-tools/dbgsym-root/DEBIAN dpkg-gencontrol -phts-nim-tools -ldebian/changelog -Tdebian/hts-nim-tools.substvars -cdebian/control -Pdebian/.debhelper/hts-nim-tools/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=hts-nim-tools-dbgsym "-DDepends=hts-nim-tools (= \${binary:Version})" "-DDescription=debug symbols for hts-nim-tools" -DBuild-Ids=db460e1c9a80e83ba5bd2611204a46b336bb2929 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/hts-nim-tools/dbgsym-root/DEBIAN/control dpkg-gencontrol -phts-nim-tools -ldebian/changelog -Tdebian/hts-nim-tools.substvars -cdebian/control -Pdebian/hts-nim-tools chmod 0644 -- debian/hts-nim-tools/DEBIAN/control dh_md5sums install -m0755 -d debian/hts-nim-tools/DEBIAN cd debian/hts-nim-tools >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/hts-nim-tools/DEBIAN/md5sums install -m0755 -d debian/.debhelper/hts-nim-tools/dbgsym-root/DEBIAN cd debian/.debhelper/hts-nim-tools/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/hts-nim-tools/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/hts-nim-tools .. dpkg-deb --root-owner-group --build debian/.debhelper/hts-nim-tools/dbgsym-root .. dpkg-deb: building package 'hts-nim-tools' in '../hts-nim-tools_0.2.1-2_armhf.deb'. dpkg-deb: building package 'hts-nim-tools-dbgsym' in '../hts-nim-tools-dbgsym_0.2.1-2_armhf.deb'. dpkg-genbuildinfo --build=binary -O../hts-nim-tools_0.2.1-2_armhf.buildinfo dpkg-genchanges --build=binary -O../hts-nim-tools_0.2.1-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/9620/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/9620/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/9620 and its subdirectories I: Current time: Tue Dec 3 07:21:17 +14 2024 I: pbuilder-time-stamp: 1733160077