I: pbuilder: network access will be disabled during build I: Current time: Fri Jul 19 21:41:10 +14 2024 I: pbuilder-time-stamp: 1721374870 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ctffind_4.1.14-3.dsc] I: copying [./ctffind_4.1.14.orig.tar.gz] I: copying [./ctffind_4.1.14-3.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Jul 18 05:06:20 2024 gpgv: using RSA key B60A1BF363DC1319FF0A8E89116852BCDF7515C0 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ctffind_4.1.14-3.dsc: no acceptable signature found dpkg-source: info: extracting ctffind in ctffind-4.1.14 dpkg-source: info: unpacking ctffind_4.1.14.orig.tar.gz dpkg-source: info: unpacking ctffind_4.1.14-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying src-core-matrix I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/28705/tmp/hooks/D01_modify_environment starting debug: Running on virt64z. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jul 19 07:41 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/28705/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/28705/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=ace2c349bd0441aa979813e83f2ff194 LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=28705 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.F8RDoYfd/pbuilderrc_MJFQ --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.F8RDoYfd/b2 --logfile b2/build.log ctffind_4.1.14-3.dsc' SUDO_GID=110 SUDO_UID=103 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:3142/ I: uname -a Linux i-capture-the-hostname 6.1.0-23-arm64 #1 SMP Debian 6.1.99-1 (2024-07-15) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 5 22:35 /bin -> usr/bin I: user script /srv/workspace/pbuilder/28705/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libwxgtk3.2-dev, libfftw3-dev, libjpeg-dev, libtiff-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19503 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libwxgtk3.2-dev; however: Package libwxgtk3.2-dev is not installed. pbuilder-satisfydepends-dummy depends on libfftw3-dev; however: Package libfftw3-dev is not installed. pbuilder-satisfydepends-dummy depends on libjpeg-dev; however: Package libjpeg-dev is not installed. pbuilder-satisfydepends-dummy depends on libtiff-dev; however: Package libtiff-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} libapparmor1{a} libarchive-zip-perl{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libcairo-gobject2{a} libcairo2{a} libcloudproviders0{a} libcolord2{a} libcom-err2{a} libcups2t64{a} libcurl4t64{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libelf1t64{a} libepoxy0{a} libexpat1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk-3-0t64{a} libgtk-3-common{a} libharfbuzz0b{a} libice6{a} libicu72{a} libjbig-dev{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc-dev{a} liblerc4{a} libllvm17t64{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnotify4{a} libopengl-dev{a} libopengl0{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpcre2-32-0{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv-dev{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsystemd-shared{a} libthai-data{a} libthai0{a} libtiff-dev{a} libtiff6{a} libtiffxx6{a} libtool{a} libuchardet0{a} libvulkan1{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwebp-dev{a} libwebp7{a} libwebpdecoder3{a} libwebpdemux2{a} libwebpmux3{a} libwxbase3.2-1t64{a} libwxgtk-gl3.2-1t64{a} libwxgtk3.2-1t64{a} libwxgtk3.2-dev{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml2{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libz3-4{a} libzstd-dev{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} shared-mime-info{a} systemd{a} systemd-sysv{a} wx-common{a} wx3.2-headers{a} x11-common{a} x11proto-dev{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: at-spi2-core ca-certificates chrony curl krb5-locales libarchive-cpio-perl libgdk-pixbuf2.0-bin libglib2.0-data libgtk-3-bin libkmod2 libldap-common libltdl-dev libmail-sendmail-perl libnss-systemd librsvg2-common libsasl2-modules linux-sysctl-defaults lynx mesa-vulkan-drivers ntpsec openntpd psmisc publicsuffix systemd-cryptsetup systemd-timesyncd wget xdg-user-dirs zip 0 packages upgraded, 200 newly installed, 0 to remove and 0 not upgraded. Need to get 101 MB of archives. After unpacking 384 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf libapparmor1 armhf 3.1.7-1+b1 [38.2 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf libsystemd-shared armhf 256.2-1 [1879 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf systemd armhf 256.2-1 [3369 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf systemd-sysv armhf 256.2-1 [56.9 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf libdbus-1-3 armhf 1.14.10-4+b1 [181 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf dbus-bin armhf 1.14.10-4+b1 [104 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf dbus-session-bus-common all 1.14.10-4 [79.0 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf dbus-daemon armhf 1.14.10-4+b1 [171 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf dbus-system-bus-common all 1.14.10-4 [80.1 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf dbus armhf 1.14.10-4+b1 [96.0 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf libproc2-0 armhf 2:4.0.4-5 [55.8 kB] Get: 13 http://deb.debian.org/debian unstable/main armhf procps armhf 2:4.0.4-5 [863 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.22.5-1 [195 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf libpam-systemd armhf 256.2-1 [251 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.2-1 [87.8 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.12.1-2 [1376 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf libgdk-pixbuf2.0-common all 2.42.12+dfsg-1 [311 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf libglib2.0-0t64 armhf 2.80.4-1 [1314 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-5 [9075 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg-3+b1 [583 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf shared-mime-info armhf 2.4-5 [754 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf libjpeg62-turbo armhf 1:2.1.5-3 [143 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf libpng16-16t64 armhf 1.6.43-5 [262 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf libdeflate0 armhf 1.20-1 [35.9 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf libjbig0 armhf 2.1-6.1+b1 [27.3 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf liblerc4 armhf 4.0.0+ds-4+b1 [137 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf libsharpyuv0 armhf 1.4.0-0.1 [111 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf libwebp7 armhf 1.4.0-0.1 [265 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf libtiff6 armhf 4.5.1+git230720-4 [301 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf libgdk-pixbuf-2.0-0 armhf 2.42.12+dfsg-1 [123 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf gtk-update-icon-cache armhf 3.24.43-1 [45.7 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf hicolor-icon-theme all 0.18-1 [12.0 kB] Get: 41 http://deb.debian.org/debian unstable/main armhf adwaita-icon-theme all 46.0-1 [614 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf at-spi2-common all 2.52.0-1 [166 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf autoconf all 2.71-3 [332 kB] Get: 45 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf autopoint all 0.22.5-1 [723 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf dbus-user-session armhf 1.14.10-4+b1 [79.1 kB] Get: 49 http://deb.debian.org/debian unstable/main armhf libdconf1 armhf 0.40.0-4+b2 [36.9 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf dconf-service armhf 0.40.0-4+b2 [27.7 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf dconf-gsettings-backend armhf 0.40.0-4+b2 [24.1 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.16 [88.6 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-7 [517 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 56 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 58 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.191-2 [183 kB] Get: 59 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 60 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.22.5-1 [1479 kB] Get: 61 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 62 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 63 http://deb.debian.org/debian unstable/main armhf debhelper all 13.16 [891 kB] Get: 64 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b4 [293 kB] Get: 65 http://deb.debian.org/debian unstable/main armhf libfreetype6 armhf 2.13.2+dfsg-1+b4 [372 kB] Get: 66 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-mono all 2.37-8 [489 kB] Get: 67 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-core all 2.37-8 [840 kB] Get: 68 http://deb.debian.org/debian unstable/main armhf fontconfig-config armhf 2.15.0-1.1 [317 kB] Get: 69 http://deb.debian.org/debian unstable/main armhf libfontconfig1 armhf 2.15.0-1.1 [370 kB] Get: 70 http://deb.debian.org/debian unstable/main armhf fontconfig armhf 2.15.0-1.1 [461 kB] Get: 71 http://deb.debian.org/debian unstable/main armhf libatk1.0-0t64 armhf 2.52.0-1 [44.0 kB] Get: 72 http://deb.debian.org/debian unstable/main armhf libxau6 armhf 1:1.0.9-1+b1 [17.4 kB] Get: 73 http://deb.debian.org/debian unstable/main armhf libxdmcp6 armhf 1:1.1.2-3+b1 [23.0 kB] Get: 74 http://deb.debian.org/debian unstable/main armhf libxcb1 armhf 1.17.0-2 [140 kB] Get: 75 http://deb.debian.org/debian unstable/main armhf libx11-data all 2:1.8.7-1 [328 kB] Get: 76 http://deb.debian.org/debian unstable/main armhf libx11-6 armhf 2:1.8.7-1+b1 [739 kB] Get: 77 http://deb.debian.org/debian unstable/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 78 http://deb.debian.org/debian unstable/main armhf libxi6 armhf 2:1.8.1-1 [73.8 kB] Get: 79 http://deb.debian.org/debian unstable/main armhf libatspi2.0-0t64 armhf 2.52.0-1 [66.2 kB] Get: 80 http://deb.debian.org/debian unstable/main armhf libatk-bridge2.0-0t64 armhf 2.52.0-1 [59.3 kB] Get: 81 http://deb.debian.org/debian unstable/main armhf libavahi-common-data armhf 0.8-13+b2 [112 kB] Get: 82 http://deb.debian.org/debian unstable/main armhf libavahi-common3 armhf 0.8-13+b2 [40.2 kB] Get: 83 http://deb.debian.org/debian unstable/main armhf libavahi-client3 armhf 0.8-13+b2 [43.4 kB] Get: 84 http://deb.debian.org/debian unstable/main armhf libpixman-1-0 armhf 0.42.2-1+b1 [476 kB] Get: 85 http://deb.debian.org/debian unstable/main armhf libxcb-render0 armhf 1.17.0-2 [114 kB] Get: 86 http://deb.debian.org/debian unstable/main armhf libxcb-shm0 armhf 1.17.0-2 [105 kB] Get: 87 http://deb.debian.org/debian unstable/main armhf libxrender1 armhf 1:0.9.10-1.1+b1 [24.9 kB] Get: 88 http://deb.debian.org/debian unstable/main armhf libcairo2 armhf 1.18.0-3+b1 [442 kB] Get: 89 http://deb.debian.org/debian unstable/main armhf libcairo-gobject2 armhf 1.18.0-3+b1 [129 kB] Get: 90 http://deb.debian.org/debian unstable/main armhf libcloudproviders0 armhf 0.3.6-1 [24.5 kB] Get: 91 http://deb.debian.org/debian unstable/main armhf liblcms2-2 armhf 2.14-2+b1 [126 kB] Get: 92 http://deb.debian.org/debian unstable/main armhf libcolord2 armhf 1.4.7-1+b1 [121 kB] Get: 93 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.1-1 [22.1 kB] Get: 94 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 95 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 96 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 97 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 98 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 99 http://deb.debian.org/debian unstable/main armhf libcups2t64 armhf 2.4.10-1 [215 kB] Get: 100 http://deb.debian.org/debian unstable/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-6 [18.0 kB] Get: 101 http://deb.debian.org/debian unstable/main armhf libsasl2-2 armhf 2.1.28+dfsg1-6 [50.1 kB] Get: 102 http://deb.debian.org/debian unstable/main armhf libldap-2.5-0 armhf 2.5.18+dfsg-2 [162 kB] Get: 103 http://deb.debian.org/debian unstable/main armhf libnghttp2-14 armhf 1.62.1-2 [63.7 kB] Get: 104 http://deb.debian.org/debian unstable/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.6 kB] Get: 105 http://deb.debian.org/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b4 [53.2 kB] Get: 106 http://deb.debian.org/debian unstable/main armhf libssh2-1t64 armhf 1.11.0-5 [199 kB] Get: 107 http://deb.debian.org/debian unstable/main armhf libcurl4t64 armhf 8.8.0-4 [399 kB] Get: 108 http://deb.debian.org/debian unstable/main armhf libdatrie1 armhf 0.2.13-3 [34.4 kB] Get: 109 http://deb.debian.org/debian unstable/main armhf libdeflate-dev armhf 1.20-1 [44.0 kB] Get: 110 http://deb.debian.org/debian unstable/main armhf libdrm-common all 2.4.121-2 [7972 B] Get: 111 http://deb.debian.org/debian unstable/main armhf libdrm2 armhf 2.4.121-2 [33.9 kB] Get: 112 http://deb.debian.org/debian unstable/main armhf libdrm-amdgpu1 armhf 2.4.121-2 [20.4 kB] Get: 113 http://deb.debian.org/debian unstable/main armhf libdrm-radeon1 armhf 2.4.121-2 [19.6 kB] Get: 114 http://deb.debian.org/debian unstable/main armhf libedit2 armhf 3.1-20240517-1 [77.7 kB] Get: 115 http://deb.debian.org/debian unstable/main armhf libepoxy0 armhf 1.5.10-1+b2 [167 kB] Get: 116 http://deb.debian.org/debian unstable/main armhf libfftw3-double3 armhf 3.3.10-1+b3 [331 kB] Get: 117 http://deb.debian.org/debian unstable/main armhf libfftw3-single3 armhf 3.3.10-1+b3 [520 kB] Get: 118 http://deb.debian.org/debian unstable/main armhf libfftw3-bin armhf 3.3.10-1+b3 [42.0 kB] Get: 119 http://deb.debian.org/debian unstable/main armhf libfftw3-dev armhf 3.3.10-1+b3 [834 kB] Get: 120 http://deb.debian.org/debian unstable/main armhf libfribidi0 armhf 1.0.13-3+b1 [69.4 kB] Get: 121 http://deb.debian.org/debian unstable/main armhf libglvnd0 armhf 1.7.0-1+b1 [52.2 kB] Get: 122 http://deb.debian.org/debian unstable/main armhf libglapi-mesa armhf 24.1.3-2 [43.4 kB] Get: 123 http://deb.debian.org/debian unstable/main armhf libx11-xcb1 armhf 2:1.8.7-1+b1 [232 kB] Get: 124 http://deb.debian.org/debian unstable/main armhf libxcb-dri2-0 armhf 1.17.0-2 [106 kB] Get: 125 http://deb.debian.org/debian unstable/main armhf libxcb-dri3-0 armhf 1.17.0-2 [106 kB] Get: 126 http://deb.debian.org/debian unstable/main armhf libxcb-glx0 armhf 1.17.0-2 [120 kB] Get: 127 http://deb.debian.org/debian unstable/main armhf libxcb-present0 armhf 1.17.0-2 [105 kB] Get: 128 http://deb.debian.org/debian unstable/main armhf libxcb-randr0 armhf 1.17.0-2 [115 kB] Get: 129 http://deb.debian.org/debian unstable/main armhf libxcb-sync1 armhf 1.17.0-2 [108 kB] Get: 130 http://deb.debian.org/debian unstable/main armhf libxcb-xfixes0 armhf 1.17.0-2 [109 kB] Get: 131 http://deb.debian.org/debian unstable/main armhf libxfixes3 armhf 1:6.0.0-2+b1 [18.6 kB] Get: 132 http://deb.debian.org/debian unstable/main armhf libxshmfence1 armhf 1.3-1+b1 [8628 B] Get: 133 http://deb.debian.org/debian unstable/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.2 kB] Get: 134 http://deb.debian.org/debian unstable/main armhf libvulkan1 armhf 1.3.283.0-1 [110 kB] Get: 135 http://deb.debian.org/debian unstable/main armhf libz3-4 armhf 4.8.12-3.1+b2 [6324 kB] Get: 136 http://deb.debian.org/debian unstable/main armhf libllvm17t64 armhf 1:17.0.6-12+b1 [21.6 MB] Get: 137 http://deb.debian.org/debian unstable/main armhf libsensors-config all 1:3.6.0-10 [14.6 kB] Get: 138 http://deb.debian.org/debian unstable/main armhf libsensors5 armhf 1:3.6.0-10 [32.0 kB] Get: 139 http://deb.debian.org/debian unstable/main armhf libgl1-mesa-dri armhf 24.1.3-2 [6631 kB] Get: 140 http://deb.debian.org/debian unstable/main armhf libglx-mesa0 armhf 24.1.3-2 [131 kB] Get: 141 http://deb.debian.org/debian unstable/main armhf libglx0 armhf 1.7.0-1+b1 [32.6 kB] Get: 142 http://deb.debian.org/debian unstable/main armhf libgl1 armhf 1.7.0-1+b1 [91.1 kB] Get: 143 http://deb.debian.org/debian unstable/main armhf xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 144 http://deb.debian.org/debian unstable/main armhf x11proto-dev all 2024.1-1 [603 kB] Get: 145 http://deb.debian.org/debian unstable/main armhf libxau-dev armhf 1:1.0.9-1+b1 [20.8 kB] Get: 146 http://deb.debian.org/debian unstable/main armhf libxdmcp-dev armhf 1:1.1.2-3+b1 [39.3 kB] Get: 147 http://deb.debian.org/debian unstable/main armhf xtrans-dev all 1.4.0-1 [98.7 kB] Get: 148 http://deb.debian.org/debian unstable/main armhf libxcb1-dev armhf 1.17.0-2 [180 kB] Get: 149 http://deb.debian.org/debian unstable/main armhf libx11-dev armhf 2:1.8.7-1+b1 [818 kB] Get: 150 http://deb.debian.org/debian unstable/main armhf libglx-dev armhf 1.7.0-1+b1 [15.8 kB] Get: 151 http://deb.debian.org/debian unstable/main armhf libgl-dev armhf 1.7.0-1+b1 [101 kB] Get: 152 http://deb.debian.org/debian unstable/main armhf libopengl0 armhf 1.7.0-1+b1 [31.9 kB] Get: 153 http://deb.debian.org/debian unstable/main armhf libglu1-mesa armhf 9.0.2-1.1+b1 [139 kB] Get: 154 http://deb.debian.org/debian unstable/main armhf libopengl-dev armhf 1.7.0-1+b1 [5384 B] Get: 155 http://deb.debian.org/debian unstable/main armhf libglu1-mesa-dev armhf 9.0.2-1.1+b1 [179 kB] Get: 156 http://deb.debian.org/debian unstable/main armhf libgraphite2-3 armhf 1.3.14-2 [63.2 kB] Get: 157 http://deb.debian.org/debian unstable/main armhf libharfbuzz0b armhf 8.3.0-2+b1 [2156 kB] Get: 158 http://deb.debian.org/debian unstable/main armhf libthai-data all 0.1.29-2 [168 kB] Get: 159 http://deb.debian.org/debian unstable/main armhf libthai0 armhf 0.1.29-2 [45.8 kB] Get: 160 http://deb.debian.org/debian unstable/main armhf libpango-1.0-0 armhf 1.54.0+ds-1 [195 kB] Get: 161 http://deb.debian.org/debian unstable/main armhf libpangoft2-1.0-0 armhf 1.54.0+ds-1 [41.8 kB] Get: 162 http://deb.debian.org/debian unstable/main armhf libpangocairo-1.0-0 armhf 1.54.0+ds-1 [31.2 kB] Get: 163 http://deb.debian.org/debian unstable/main armhf libwayland-client0 armhf 1.22.0-2.1+b1 [20.4 kB] Get: 164 http://deb.debian.org/debian unstable/main armhf libwayland-cursor0 armhf 1.22.0-2.1+b1 [10.2 kB] Get: 165 http://deb.debian.org/debian unstable/main armhf libwayland-egl1 armhf 1.22.0-2.1+b1 [5416 B] Get: 166 http://deb.debian.org/debian unstable/main armhf libxcomposite1 armhf 1:0.4.5-1+b1 [14.4 kB] Get: 167 http://deb.debian.org/debian unstable/main armhf libxcursor1 armhf 1:1.2.2-1 [34.1 kB] Get: 168 http://deb.debian.org/debian unstable/main armhf libxdamage1 armhf 1:1.1.6-1+b1 [14.8 kB] Get: 169 http://deb.debian.org/debian unstable/main armhf libxinerama1 armhf 2:1.1.4-3+b1 [15.6 kB] Get: 170 http://deb.debian.org/debian unstable/main armhf xkb-data all 2.42-1 [790 kB] Get: 171 http://deb.debian.org/debian unstable/main armhf libxkbcommon0 armhf 1.6.0-1+b1 [96.9 kB] Get: 172 http://deb.debian.org/debian unstable/main armhf libxrandr2 armhf 2:1.5.4-1 [33.0 kB] Get: 173 http://deb.debian.org/debian unstable/main armhf libgtk-3-common all 3.24.43-1 [4657 kB] Get: 174 http://deb.debian.org/debian unstable/main armhf libgtk-3-0t64 armhf 3.24.43-1 [2352 kB] Get: 175 http://deb.debian.org/debian unstable/main armhf x11-common all 1:7.7+23.1 [216 kB] Get: 176 http://deb.debian.org/debian unstable/main armhf libice6 armhf 2:1.0.10-1+b1 [50.1 kB] Get: 177 http://deb.debian.org/debian unstable/main armhf libjbig-dev armhf 2.1-6.1+b1 [27.8 kB] Get: 178 http://deb.debian.org/debian unstable/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-3 [260 kB] Get: 179 http://deb.debian.org/debian unstable/main armhf libjpeg-dev armhf 1:2.1.5-3 [71.9 kB] Get: 180 http://deb.debian.org/debian unstable/main armhf liblerc-dev armhf 4.0.0+ds-4+b1 [153 kB] Get: 181 http://deb.debian.org/debian unstable/main armhf liblzma-dev armhf 5.6.2-2 [288 kB] Get: 182 http://deb.debian.org/debian unstable/main armhf libnotify4 armhf 0.8.3-1+b1 [23.6 kB] Get: 183 http://deb.debian.org/debian unstable/main armhf libpcre2-32-0 armhf 10.42-4+b1 [203 kB] Get: 184 http://deb.debian.org/debian unstable/main armhf libsharpyuv-dev armhf 1.4.0-0.1 [114 kB] Get: 185 http://deb.debian.org/debian unstable/main armhf libsm6 armhf 2:1.2.3-1+b1 [31.7 kB] Get: 186 http://deb.debian.org/debian unstable/main armhf libzstd-dev armhf 1.5.6+dfsg-1 [326 kB] Get: 187 http://deb.debian.org/debian unstable/main armhf libwebpdemux2 armhf 1.4.0-0.1 [110 kB] Get: 188 http://deb.debian.org/debian unstable/main armhf libwebpmux3 armhf 1.4.0-0.1 [120 kB] Get: 189 http://deb.debian.org/debian unstable/main armhf libwebpdecoder3 armhf 1.4.0-0.1 [182 kB] Get: 190 http://deb.debian.org/debian unstable/main armhf libwebp-dev armhf 1.4.0-0.1 [389 kB] Get: 191 http://deb.debian.org/debian unstable/main armhf libtiffxx6 armhf 4.5.1+git230720-4 [149 kB] Get: 192 http://deb.debian.org/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1 [904 kB] Get: 193 http://deb.debian.org/debian unstable/main armhf libtiff-dev armhf 4.5.1+git230720-4 [441 kB] Get: 194 http://deb.debian.org/debian unstable/main armhf libwxbase3.2-1t64 armhf 3.2.5+dfsg-1 [915 kB] Get: 195 http://deb.debian.org/debian unstable/main armhf libxtst6 armhf 2:1.2.3-1.1+b1 [24.2 kB] Get: 196 http://deb.debian.org/debian unstable/main armhf libwxgtk3.2-1t64 armhf 3.2.5+dfsg-1 [3938 kB] Get: 197 http://deb.debian.org/debian unstable/main armhf libwxgtk-gl3.2-1t64 armhf 3.2.5+dfsg-1 [79.5 kB] Get: 198 http://deb.debian.org/debian unstable/main armhf wx-common armhf 3.2.5+dfsg-1 [112 kB] Get: 199 http://deb.debian.org/debian unstable/main armhf wx3.2-headers all 3.2.5+dfsg-1 [1127 kB] Get: 200 http://deb.debian.org/debian unstable/main armhf libwxgtk3.2-dev armhf 3.2.5+dfsg-1 [79.6 kB] Fetched 101 MB in 1s (86.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libapparmor1:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19503 files and directories currently installed.) Preparing to unpack .../libapparmor1_3.1.7-1+b1_armhf.deb ... Unpacking libapparmor1:armhf (3.1.7-1+b1) ... Selecting previously unselected package libsystemd-shared:armhf. Preparing to unpack .../libsystemd-shared_256.2-1_armhf.deb ... Unpacking libsystemd-shared:armhf (256.2-1) ... Selecting previously unselected package systemd. Preparing to unpack .../systemd_256.2-1_armhf.deb ... Unpacking systemd (256.2-1) ... Setting up libapparmor1:armhf (3.1.7-1+b1) ... Setting up libsystemd-shared:armhf (256.2-1) ... Setting up systemd (256.2-1) ... Created symlink '/etc/systemd/system/getty.target.wants/getty@tty1.service' -> '/usr/lib/systemd/system/getty@.service'. Created symlink '/etc/systemd/system/multi-user.target.wants/remote-fs.target' -> '/usr/lib/systemd/system/remote-fs.target'. Created symlink '/etc/systemd/system/sysinit.target.wants/systemd-pstore.service' -> '/usr/lib/systemd/system/systemd-pstore.service'. Initializing machine ID from random generator. Creating group 'systemd-journal' with GID 999. Creating group 'systemd-network' with GID 998. Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998. /usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring. Selecting previously unselected package systemd-sysv. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20470 files and directories currently installed.) Preparing to unpack .../000-systemd-sysv_256.2-1_armhf.deb ... Unpacking systemd-sysv (256.2-1) ... Selecting previously unselected package libdbus-1-3:armhf. Preparing to unpack .../001-libdbus-1-3_1.14.10-4+b1_armhf.deb ... Unpacking libdbus-1-3:armhf (1.14.10-4+b1) ... Selecting previously unselected package dbus-bin. Preparing to unpack .../002-dbus-bin_1.14.10-4+b1_armhf.deb ... Unpacking dbus-bin (1.14.10-4+b1) ... Selecting previously unselected package dbus-session-bus-common. Preparing to unpack .../003-dbus-session-bus-common_1.14.10-4_all.deb ... Unpacking dbus-session-bus-common (1.14.10-4) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../004-libexpat1_2.6.2-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.2-1) ... Selecting previously unselected package dbus-daemon. Preparing to unpack .../005-dbus-daemon_1.14.10-4+b1_armhf.deb ... Unpacking dbus-daemon (1.14.10-4+b1) ... Selecting previously unselected package dbus-system-bus-common. Preparing to unpack .../006-dbus-system-bus-common_1.14.10-4_all.deb ... Unpacking dbus-system-bus-common (1.14.10-4) ... Selecting previously unselected package dbus. Preparing to unpack .../007-dbus_1.14.10-4+b1_armhf.deb ... Unpacking dbus (1.14.10-4+b1) ... Selecting previously unselected package libproc2-0:armhf. Preparing to unpack .../008-libproc2-0_2%3a4.0.4-5_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.4-5) ... Selecting previously unselected package procps. Preparing to unpack .../009-procps_2%3a4.0.4-5_armhf.deb ... Unpacking procps (2:4.0.4-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../010-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../011-libmagic-mgc_1%3a5.45-3_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../012-libmagic1t64_1%3a5.45-3_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../013-file_1%3a5.45-3_armhf.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../014-gettext-base_0.22.5-1_armhf.deb ... Unpacking gettext-base (0.22.5-1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../015-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../016-groff-base_1.23.0-5_armhf.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package libpam-systemd:armhf. Preparing to unpack .../017-libpam-systemd_256.2-1_armhf.deb ... Unpacking libpam-systemd:armhf (256.2-1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../018-bsdextrautils_2.40.2-1_armhf.deb ... Unpacking bsdextrautils (2.40.2-1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../019-libpipeline1_1.5.7-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../020-man-db_2.12.1-2_armhf.deb ... Unpacking man-db (2.12.1-2) ... Selecting previously unselected package libgdk-pixbuf2.0-common. Preparing to unpack .../021-libgdk-pixbuf2.0-common_2.42.12+dfsg-1_all.deb ... Unpacking libgdk-pixbuf2.0-common (2.42.12+dfsg-1) ... Selecting previously unselected package libglib2.0-0t64:armhf. Preparing to unpack .../022-libglib2.0-0t64_2.80.4-1_armhf.deb ... Unpacking libglib2.0-0t64:armhf (2.80.4-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../023-libicu72_72.1-5_armhf.deb ... Unpacking libicu72:armhf (72.1-5) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../024-libxml2_2.12.7+dfsg-3+b1_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg-3+b1) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../025-shared-mime-info_2.4-5_armhf.deb ... Unpacking shared-mime-info (2.4-5) ... Selecting previously unselected package libjpeg62-turbo:armhf. Preparing to unpack .../026-libjpeg62-turbo_1%3a2.1.5-3_armhf.deb ... Unpacking libjpeg62-turbo:armhf (1:2.1.5-3) ... Selecting previously unselected package libpng16-16t64:armhf. Preparing to unpack .../027-libpng16-16t64_1.6.43-5_armhf.deb ... Unpacking libpng16-16t64:armhf (1.6.43-5) ... Selecting previously unselected package libdeflate0:armhf. Preparing to unpack .../028-libdeflate0_1.20-1_armhf.deb ... Unpacking libdeflate0:armhf (1.20-1) ... Selecting previously unselected package libjbig0:armhf. Preparing to unpack .../029-libjbig0_2.1-6.1+b1_armhf.deb ... Unpacking libjbig0:armhf (2.1-6.1+b1) ... Selecting previously unselected package liblerc4:armhf. Preparing to unpack .../030-liblerc4_4.0.0+ds-4+b1_armhf.deb ... Unpacking liblerc4:armhf (4.0.0+ds-4+b1) ... Selecting previously unselected package libsharpyuv0:armhf. Preparing to unpack .../031-libsharpyuv0_1.4.0-0.1_armhf.deb ... Unpacking libsharpyuv0:armhf (1.4.0-0.1) ... Selecting previously unselected package libwebp7:armhf. Preparing to unpack .../032-libwebp7_1.4.0-0.1_armhf.deb ... Unpacking libwebp7:armhf (1.4.0-0.1) ... Selecting previously unselected package libtiff6:armhf. Preparing to unpack .../033-libtiff6_4.5.1+git230720-4_armhf.deb ... Unpacking libtiff6:armhf (4.5.1+git230720-4) ... Selecting previously unselected package libgdk-pixbuf-2.0-0:armhf. Preparing to unpack .../034-libgdk-pixbuf-2.0-0_2.42.12+dfsg-1_armhf.deb ... Unpacking libgdk-pixbuf-2.0-0:armhf (2.42.12+dfsg-1) ... Selecting previously unselected package gtk-update-icon-cache. Preparing to unpack .../035-gtk-update-icon-cache_3.24.43-1_armhf.deb ... Unpacking gtk-update-icon-cache (3.24.43-1) ... Selecting previously unselected package hicolor-icon-theme. Preparing to unpack .../036-hicolor-icon-theme_0.18-1_all.deb ... Unpacking hicolor-icon-theme (0.18-1) ... Selecting previously unselected package adwaita-icon-theme. Preparing to unpack .../037-adwaita-icon-theme_46.0-1_all.deb ... Unpacking adwaita-icon-theme (46.0-1) ... Selecting previously unselected package at-spi2-common. 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Selecting previously unselected package libglx-mesa0:armhf. Preparing to unpack .../136-libglx-mesa0_24.1.3-2_armhf.deb ... Unpacking libglx-mesa0:armhf (24.1.3-2) ... Selecting previously unselected package libglx0:armhf. Preparing to unpack .../137-libglx0_1.7.0-1+b1_armhf.deb ... Unpacking libglx0:armhf (1.7.0-1+b1) ... Selecting previously unselected package libgl1:armhf. Preparing to unpack .../138-libgl1_1.7.0-1+b1_armhf.deb ... Unpacking libgl1:armhf (1.7.0-1+b1) ... Selecting previously unselected package xorg-sgml-doctools. Preparing to unpack .../139-xorg-sgml-doctools_1%3a1.11-1.1_all.deb ... Unpacking xorg-sgml-doctools (1:1.11-1.1) ... Selecting previously unselected package x11proto-dev. Preparing to unpack .../140-x11proto-dev_2024.1-1_all.deb ... Unpacking x11proto-dev (2024.1-1) ... Selecting previously unselected package libxau-dev:armhf. Preparing to unpack .../141-libxau-dev_1%3a1.0.9-1+b1_armhf.deb ... Unpacking libxau-dev:armhf (1:1.0.9-1+b1) ... 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Selecting previously unselected package libopengl0:armhf. Preparing to unpack .../148-libopengl0_1.7.0-1+b1_armhf.deb ... Unpacking libopengl0:armhf (1.7.0-1+b1) ... Selecting previously unselected package libglu1-mesa:armhf. Preparing to unpack .../149-libglu1-mesa_9.0.2-1.1+b1_armhf.deb ... Unpacking libglu1-mesa:armhf (9.0.2-1.1+b1) ... Selecting previously unselected package libopengl-dev:armhf. Preparing to unpack .../150-libopengl-dev_1.7.0-1+b1_armhf.deb ... Unpacking libopengl-dev:armhf (1.7.0-1+b1) ... Selecting previously unselected package libglu1-mesa-dev:armhf. Preparing to unpack .../151-libglu1-mesa-dev_9.0.2-1.1+b1_armhf.deb ... Unpacking libglu1-mesa-dev:armhf (9.0.2-1.1+b1) ... Selecting previously unselected package libgraphite2-3:armhf. Preparing to unpack .../152-libgraphite2-3_1.3.14-2_armhf.deb ... Unpacking libgraphite2-3:armhf (1.3.14-2) ... Selecting previously unselected package libharfbuzz0b:armhf. 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Selecting previously unselected package liblerc-dev:armhf. Preparing to unpack .../176-liblerc-dev_4.0.0+ds-4+b1_armhf.deb ... Unpacking liblerc-dev:armhf (4.0.0+ds-4+b1) ... Selecting previously unselected package liblzma-dev:armhf. Preparing to unpack .../177-liblzma-dev_5.6.2-2_armhf.deb ... Unpacking liblzma-dev:armhf (5.6.2-2) ... Selecting previously unselected package libnotify4:armhf. Preparing to unpack .../178-libnotify4_0.8.3-1+b1_armhf.deb ... Unpacking libnotify4:armhf (0.8.3-1+b1) ... Selecting previously unselected package libpcre2-32-0:armhf. Preparing to unpack .../179-libpcre2-32-0_10.42-4+b1_armhf.deb ... Unpacking libpcre2-32-0:armhf (10.42-4+b1) ... Selecting previously unselected package libsharpyuv-dev:armhf. Preparing to unpack .../180-libsharpyuv-dev_1.4.0-0.1_armhf.deb ... Unpacking libsharpyuv-dev:armhf (1.4.0-0.1) ... Selecting previously unselected package libsm6:armhf. Preparing to unpack .../181-libsm6_2%3a1.2.3-1+b1_armhf.deb ... Unpacking libsm6:armhf (2:1.2.3-1+b1) ... Selecting previously unselected package libzstd-dev:armhf. Preparing to unpack .../182-libzstd-dev_1.5.6+dfsg-1_armhf.deb ... Unpacking libzstd-dev:armhf (1.5.6+dfsg-1) ... Selecting previously unselected package libwebpdemux2:armhf. Preparing to unpack .../183-libwebpdemux2_1.4.0-0.1_armhf.deb ... Unpacking libwebpdemux2:armhf (1.4.0-0.1) ... Selecting previously unselected package libwebpmux3:armhf. Preparing to unpack .../184-libwebpmux3_1.4.0-0.1_armhf.deb ... Unpacking libwebpmux3:armhf (1.4.0-0.1) ... Selecting previously unselected package libwebpdecoder3:armhf. Preparing to unpack .../185-libwebpdecoder3_1.4.0-0.1_armhf.deb ... Unpacking libwebpdecoder3:armhf (1.4.0-0.1) ... Selecting previously unselected package libwebp-dev:armhf. Preparing to unpack .../186-libwebp-dev_1.4.0-0.1_armhf.deb ... Unpacking libwebp-dev:armhf (1.4.0-0.1) ... Selecting previously unselected package libtiffxx6:armhf. Preparing to unpack .../187-libtiffxx6_4.5.1+git230720-4_armhf.deb ... Unpacking libtiffxx6:armhf (4.5.1+git230720-4) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../188-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1) ... Selecting previously unselected package libtiff-dev:armhf. Preparing to unpack .../189-libtiff-dev_4.5.1+git230720-4_armhf.deb ... Unpacking libtiff-dev:armhf (4.5.1+git230720-4) ... Selecting previously unselected package libwxbase3.2-1t64:armhf. Preparing to unpack .../190-libwxbase3.2-1t64_3.2.5+dfsg-1_armhf.deb ... Unpacking libwxbase3.2-1t64:armhf (3.2.5+dfsg-1) ... Selecting previously unselected package libxtst6:armhf. Preparing to unpack .../191-libxtst6_2%3a1.2.3-1.1+b1_armhf.deb ... Unpacking libxtst6:armhf (2:1.2.3-1.1+b1) ... Selecting previously unselected package libwxgtk3.2-1t64:armhf. Preparing to unpack .../192-libwxgtk3.2-1t64_3.2.5+dfsg-1_armhf.deb ... Unpacking libwxgtk3.2-1t64:armhf (3.2.5+dfsg-1) ... Selecting previously unselected package libwxgtk-gl3.2-1t64:armhf. Preparing to unpack .../193-libwxgtk-gl3.2-1t64_3.2.5+dfsg-1_armhf.deb ... Unpacking libwxgtk-gl3.2-1t64:armhf (3.2.5+dfsg-1) ... Selecting previously unselected package wx-common. Preparing to unpack .../194-wx-common_3.2.5+dfsg-1_armhf.deb ... Unpacking wx-common (3.2.5+dfsg-1) ... Selecting previously unselected package wx3.2-headers. Preparing to unpack .../195-wx3.2-headers_3.2.5+dfsg-1_all.deb ... Unpacking wx3.2-headers (3.2.5+dfsg-1) ... Selecting previously unselected package libwxgtk3.2-dev:armhf. Preparing to unpack .../196-libwxgtk3.2-dev_3.2.5+dfsg-1_armhf.deb ... Unpacking libwxgtk3.2-dev:armhf (3.2.5+dfsg-1) ... Setting up libexpat1:armhf (2.6.2-1) ... Setting up libpipeline1:armhf (1.5.7-2) ... Setting up libgraphite2-3:armhf (1.3.14-2) ... Setting up liblcms2-2:armhf (2.14-2+b1) ... Setting up libpixman-1-0:armhf (0.42.2-1+b1) ... Setting up libsharpyuv0:armhf (1.4.0-0.1) ... Setting up systemd-sysv (256.2-1) ... Setting up libxau6:armhf (1:1.0.9-1+b1) ... Setting up libxdmcp6:armhf (1:1.1.2-3+b1) ... Setting up libkeyutils1:armhf (1.6.3-3) ... Setting up libxcb1:armhf (1.17.0-2) ... Setting up libfftw3-single3:armhf (3.3.10-1+b3) ... Setting up libicu72:armhf (72.1-5) ... Setting up libxcb-xfixes0:armhf (1.17.0-2) ... Setting up liblerc4:armhf (4.0.0+ds-4+b1) ... Setting up libzstd-dev:armhf (1.5.6+dfsg-1) ... Setting up bsdextrautils (2.40.2-1) ... Setting up hicolor-icon-theme (0.18-1) ... Setting up libdatrie1:armhf (0.2.13-3) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libxcb-render0:armhf (1.17.0-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglvnd0:armhf (1.7.0-1+b1) ... Setting up libxcb-glx0:armhf (1.17.0-2) ... Setting up libdebhelper-perl (13.16) ... Setting up libbrotli1:armhf (1.1.0-2+b4) ... Setting up libedit2:armhf (3.1-20240517-1) ... Setting up libgdk-pixbuf2.0-common (2.42.12+dfsg-1) ... Setting up libmagic1t64:armhf (1:5.45-3) ... Setting up x11-common (1:7.7+23.1) ... Running in chroot, ignoring request. Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libsensors-config (1:3.6.0-10) ... Setting up libpsl5t64:armhf (0.21.2-1.1) ... Setting up libnghttp2-14:armhf (1.62.1-2) ... Setting up libdeflate0:armhf (1.20-1) ... Setting up libwebpdecoder3:armhf (1.4.0-0.1) ... Setting up gettext-base (0.22.5-1) ... Setting up m4 (1.4.19-4) ... Setting up xkb-data (2.42-1) ... Setting up libxcb-shm0:armhf (1.17.0-2) ... Setting up libcom-err2:armhf (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libjbig0:armhf (2.1-6.1+b1) ... Setting up libopengl0:armhf (1.7.0-1+b1) ... Setting up libelf1t64:armhf (0.191-2) ... Setting up libkrb5support0:armhf (1.21.3-3) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-6) ... Setting up libxcb-present0:armhf (1.17.0-2) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:armhf (4.8.12-3.1+b2) ... Setting up libpcre2-32-0:armhf (10.42-4+b1) ... Setting up libglib2.0-0t64:armhf (2.80.4-1) ... Setting up libjpeg62-turbo:armhf (1:2.1.5-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjpeg62-turbo-dev:armhf (1:2.1.5-3) ... Setting up libepoxy0:armhf (1.5.10-1+b2) ... Setting up libxcb-sync1:armhf (1.17.0-2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libavahi-common-data:armhf (0.8-13+b2) ... Setting up libdbus-1-3:armhf (1.14.10-4+b1) ... Setting up libfribidi0:armhf (1.0.13-3+b1) ... Setting up libproc2-0:armhf (2:4.0.4-5) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:armhf (1.6.43-5) ... Setting up autopoint (0.22.5-1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libsensors5:armhf (1:3.6.0-10) ... Setting up liblerc-dev:armhf (4.0.0+ds-4+b1) ... Setting up libk5crypto3:armhf (1.21.3-3) ... Setting up libfftw3-double3:armhf (3.3.10-1+b3) ... Setting up libglapi-mesa:armhf (24.1.3-2) ... Setting up wx3.2-headers (3.2.5+dfsg-1) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-6) ... Setting up libvulkan1:armhf (1.3.283.0-1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:armhf (1.4.0-0.1) ... Setting up liblzma-dev:armhf (5.6.2-2) ... Setting up libxcb-dri2-0:armhf (1.17.0-2) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libxshmfence1:armhf (1.3-1+b1) ... Setting up at-spi2-common (2.52.0-1) ... Setting up libtiff6:armhf (4.5.1+git230720-4) ... Setting up libxcb-randr0:armhf (1.17.0-2) ... Setting up dbus-session-bus-common (1.14.10-4) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up procps (2:4.0.4-5) ... Setting up libx11-6:armhf (2:1.8.7-1+b1) ... Setting up libthai-data (0.1.29-2) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up libkrb5-3:armhf (1.21.3-3) ... Setting up libglu1-mesa:armhf (9.0.2-1.1+b1) ... Setting up libwayland-egl1:armhf (1.22.0-2.1+b1) ... Setting up libssh2-1t64:armhf (1.11.0-5) ... Setting up libopengl-dev:armhf (1.7.0-1+b1) ... Setting up dbus-system-bus-common (1.14.10-4) ... Setting up libsharpyuv-dev:armhf (1.4.0-0.1) ... Setting up libwebpmux3:armhf (1.4.0-0.1) ... Setting up libtiffxx6:armhf (4.5.1+git230720-4) ... Setting up libdeflate-dev:armhf (1.20-1) ... Setting up libdrm-common (2.4.121-2) ... Setting up libxcomposite1:armhf (1:0.4.5-1+b1) ... Setting up libxml2:armhf (2.12.7+dfsg-3+b1) ... Setting up dbus-bin (1.14.10-4+b1) ... Setting up libxkbcommon0:armhf (1.6.0-1+b1) ... Setting up libwayland-client0:armhf (1.22.0-2.1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libxcb-dri3-0:armhf (1.17.0-2) ... Setting up libx11-xcb1:armhf (2:1.8.7-1+b1) ... Setting up libice6:armhf (2:1.0.10-1+b1) ... Setting up gettext (0.22.5-1) ... Setting up libxdamage1:armhf (1:1.1.6-1+b1) ... Setting up libatk1.0-0t64:armhf (2.52.0-1) ... Setting up libxau-dev:armhf (1:1.0.9-1+b1) ... Setting up libxrender1:armhf (1:0.9.10-1.1+b1) ... Setting up libtool (2.4.7-7) ... Setting up libfftw3-bin (3.3.10-1+b3) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:armhf (1.4.0-0.1) ... Setting up libavahi-common3:armhf (0.8-13+b2) ... Setting up libjpeg-dev:armhf (1:2.1.5-3) ... Setting up libjbig-dev:armhf (2.1-6.1+b1) ... Setting up libcloudproviders0:armhf (0.3.6-1) ... Setting up libxext6:armhf (2:1.3.4-1+b1) ... Setting up dbus-daemon (1.14.10-4+b1) ... Setting up libldap-2.5-0:armhf (2.5.18+dfsg-2) ... Setting up libcolord2:armhf (1.4.7-1+b1) ... Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libdconf1:armhf (0.40.0-4+b2) ... Setting up dh-autoreconf (20) ... Setting up libthai0:armhf (0.1.29-2) ... Setting up libxdmcp-dev:armhf (1:1.1.2-3+b1) ... Setting up libwebp-dev:armhf (1.4.0-0.1) ... Setting up libllvm17t64:armhf (1:17.0.6-12+b1) ... Setting up libfreetype6:armhf (2.13.2+dfsg-1+b4) ... Setting up libtiff-dev:armhf (4.5.1+git230720-4) ... Setting up libxfixes3:armhf (1:6.0.0-2+b1) ... Setting up dbus (1.14.10-4+b1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up shared-mime-info (2.4-5) ... Setting up libxinerama1:armhf (2:1.1.4-3+b1) ... Setting up libgssapi-krb5-2:armhf (1.21.3-3) ... Setting up libxrandr2:armhf (2:1.5.4-1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libdrm2:armhf (2.4.121-2) ... Setting up groff-base (1.23.0-5) ... Setting up libwayland-cursor0:armhf (1.22.0-2.1+b1) ... Setting up libpam-systemd:armhf (256.2-1) ... Setting up libharfbuzz0b:armhf (8.3.0-2+b1) ... Setting up libgdk-pixbuf-2.0-0:armhf (2.42.12+dfsg-1) ... Setting up libfontconfig1:armhf (2.15.0-1.1) ... Setting up libsm6:armhf (2:1.2.3-1+b1) ... Setting up libfftw3-dev:armhf (3.3.10-1+b3) ... Setting up libavahi-client3:armhf (0.8-13+b2) ... Setting up libdrm-amdgpu1:armhf (2.4.121-2) ... Setting up gtk-update-icon-cache (3.24.43-1) ... Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libxcb1-dev:armhf (1.17.0-2) ... Setting up libxi6:armhf (2:1.8.1-1) ... Setting up libcurl4t64:armhf (8.8.0-4) ... Setting up libdrm-radeon1:armhf (2.4.121-2) ... Setting up libxtst6:armhf (2:1.2.3-1.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxcursor1:armhf (1:1.2.2-1) ... Setting up libpango-1.0-0:armhf (1.54.0+ds-1) ... Setting up libgl1-mesa-dri:armhf (24.1.3-2) ... Setting up libx11-dev:armhf (2:1.8.7-1+b1) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink '/etc/systemd/system/timers.target.wants/man-db.timer' -> '/usr/lib/systemd/system/man-db.timer'. Setting up libcairo2:armhf (1.18.0-3+b1) ... Setting up dbus-user-session (1.14.10-4+b1) ... Setting up adwaita-icon-theme (46.0-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libnotify4:armhf (0.8.3-1+b1) ... Setting up libatspi2.0-0t64:armhf (2.52.0-1) ... Setting up libcairo-gobject2:armhf (1.18.0-3+b1) ... Setting up libwxbase3.2-1t64:armhf (3.2.5+dfsg-1) ... Setting up libpangoft2-1.0-0:armhf (1.54.0+ds-1) ... Setting up libcups2t64:armhf (2.4.10-1) ... Setting up libpangocairo-1.0-0:armhf (1.54.0+ds-1) ... Setting up libatk-bridge2.0-0t64:armhf (2.52.0-1) ... Setting up wx-common (3.2.5+dfsg-1) ... Setting up libglx-mesa0:armhf (24.1.3-2) ... Setting up libglx0:armhf (1.7.0-1+b1) ... Setting up debhelper (13.16) ... Setting up dconf-service (0.40.0-4+b2) ... Setting up libgl1:armhf (1.7.0-1+b1) ... Setting up libglx-dev:armhf (1.7.0-1+b1) ... Setting up libgl-dev:armhf (1.7.0-1+b1) ... Setting up dconf-gsettings-backend:armhf (0.40.0-4+b2) ... Setting up libglu1-mesa-dev:armhf (9.0.2-1.1+b1) ... Setting up libgtk-3-common (3.24.43-1) ... Setting up libgtk-3-0t64:armhf (3.24.43-1) ... Setting up libwxgtk3.2-1t64:armhf (3.2.5+dfsg-1) ... Setting up libwxgtk-gl3.2-1t64:armhf (3.2.5+dfsg-1) ... Setting up libwxgtk3.2-dev:armhf (3.2.5+dfsg-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/wx/config/gtk3-unicode-3.2 to provide /usr/bin/wx-config (wx-config) in auto mode Processing triggers for libc-bin (2.39-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/28705/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/28705/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/ctffind-4.1.14/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ctffind_4.1.14-3_source.changes dpkg-buildpackage: info: source package ctffind dpkg-buildpackage: info: source version 4.1.14-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alex Myczko dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:15: warning: The macro `AC_LIBTOOL_DLOPEN' is obsolete. configure.ac:15: You should run autoupdate. m4/ltoptions.m4:113: AC_LIBTOOL_DLOPEN is expanded from... configure.ac:15: the top level configure.ac:15: warning: AC_LIBTOOL_DLOPEN: Remove this warning and the call to _LT_SET_OPTION when you configure.ac:15: put the 'dlopen' option into LT_INIT's first parameter. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... m4/ltoptions.m4:113: AC_LIBTOOL_DLOPEN is expanded from... configure.ac:15: the top level configure.ac:16: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:16: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:16: the top level configure.ac:9: installing './compile' configure.ac:4: installing './missing' Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for icc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for icpc... no checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen... yes checking whether a program can dlopen itself... yes checking whether a statically linked program can dlopen itself... no checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: static_link = false checking wxWidgets version... 3.2.5 checking for fftw3.h... yes checking for fftwf_malloc in -lmkl_intel_lp64... no checking for fftwf_malloc in -lfftw3f... yes configure: Using FFTW for Fourier transforms checking for TIFFOpen in -lwxtiff-3.0... no checking for library containing inflate... -lz checking for library containing jpeg_read_header... -ljpeg checking for library containing TIFFOpen... -ltiff checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build make -j4 make[1]: Entering directory '/build/reproducible-path/ctffind-4.1.14' g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o ctffind-image_trim.o `test -f 'image_trim.cpp' || echo './'`image_trim.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-matrix.o `test -f 'src/core/matrix.cpp' || echo './'`src/core/matrix.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-symmetry_matrix.o `test -f 'src/core/symmetry_matrix.cpp' || echo './'`src/core/symmetry_matrix.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-abstract_image_file.o `test -f 'src/core/abstract_image_file.cpp' || echo './'`src/core/abstract_image_file.cpp In file included from src/core/core_headers.h:80, from src/core/abstract_image_file.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/matrix.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from image_trim.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-mrc_header.o `test -f 'src/core/mrc_header.cpp' || echo './'`src/core/mrc_header.cpp image_trim.cpp: In member function 'void Image::MultiplyPixelWise(Image&)': image_trim.cpp:115:13: warning: unused variable 'i' [-Wunused-variable] 115 | int i; | ^ image_trim.cpp: In member function 'void Image::WriteSlices(MRCFile*, long int, long int)': image_trim.cpp:1277:13: warning: unused variable 'number_of_slices' [-Wunused-variable] 1277 | int number_of_slices = (end_slice - start_slice) + 1; | ^~~~~~~~~~~~~~~~ image_trim.cpp: In member function 'void Image::UpdateDistributionOfRealValues(EmpiricalDistribution*, float, bool, float, float, float)': image_trim.cpp:1953:15: warning: unused variable 'edge' [-Wunused-variable] 1953 | float edge; | ^~~~ image_trim.cpp: In member function 'void Image::ComputeAmplitudeSpectrumFull2D(Image*, bool, float)': image_trim.cpp:2711:13: warning: unused variable 'image_addr_i' [-Wunused-variable] 2711 | int image_addr_i; | ^~~~~~~~~~~~ image_trim.cpp:2712:13: warning: unused variable 'image_addr_j' [-Wunused-variable] 2712 | int image_addr_j; | ^~~~~~~~~~~~ image_trim.cpp:2713:13: warning: unused variable 'i_mate' [-Wunused-variable] 2713 | int i_mate; | ^~~~~~ image_trim.cpp:2714:13: warning: unused variable 'j_mate' [-Wunused-variable] 2714 | int j_mate; | ^~~~~~ image_trim.cpp: In member function 'void Image::SpectrumBoxConvolution(Image*, int, float)': image_trim.cpp:2783:13: warning: unused variable 'l' [-Wunused-variable] 2783 | int l; | ^ image_trim.cpp:2793:14: warning: unused variable 'address_within_input' [-Wunused-variable] 2793 | long address_within_input; | ^~~~~~~~~~~~~~~~~~~~ image_trim.cpp: In member function 'void Image::TaperEdges()': image_trim.cpp:3082:57: warning: variable 'second_dimension' set but not used [-Wunused-but-set-variable] 3082 | int second_dimension; | ^~~~~~~~~~~~~~~~ image_trim.cpp:3083:57: warning: variable 'third_dimension' set but not used [-Wunused-but-set-variable] 3083 | int third_dimension; | ^~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/symmetry_matrix.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ image_trim.cpp: In member function 'void Image::InsertOtherImageAtSpecifiedPosition(Image*, int, int, int, float)': image_trim.cpp:3427:13: warning: unused variable 'kk_logi' [-Wunused-variable] 3427 | int kk_logi; | ^~~~~~~ image_trim.cpp:3430:13: warning: unused variable 'jj_logi' [-Wunused-variable] 3430 | int jj_logi; | ^~~~~~~ image_trim.cpp:3434:13: warning: unused variable 'ii_logi' [-Wunused-variable] 3434 | int ii_logi; | ^~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ image_trim.cpp: In member function 'void Image::ClipInto(Image*, float, bool, float, int, int, int)': image_trim.cpp:3482:13: warning: unused variable 'array_address' [-Wunused-variable] 3482 | int array_address = 0; | ^~~~~~~~~~~~~ image_trim.cpp:3500:16: warning: unused variable 'junk' [-Wunused-variable] 3500 | double junk; | ^~~~ src/core/matrix.cpp: In member function 'void RotationMatrix::ConvertToValidEulerAngles(float&, float&, float&)': src/core/matrix.cpp:369:80: warning: 'best_phi' may be used uninitialized [-Wmaybe-uninitialized] 369 | for (current_phi = best_phi - 1.0f; current_phi < old_best_phi + 1.0f; current_phi += 0.1f) | ~~~~~~~~~~~~~^~~~~~ src/core/matrix.cpp:327:23: note: 'best_phi' was declared here 327 | float best_phi; | ^~~~~~~~ src/core/matrix.cpp:371:96: warning: 'best_theta' may be used uninitialized [-Wmaybe-uninitialized] 371 | for (current_theta = best_theta - 1.0f; current_theta < old_best_theta + 1.0f; current_theta += 0.1f) | ~~~~~~~~~~~~~~~^~~~~~ src/core/matrix.cpp:328:23: note: 'best_theta' was declared here 328 | float best_theta; | ^~~~~~~~~~ src/core/matrix.cpp:373:96: warning: 'best_psi' may be used uninitialized [-Wmaybe-uninitialized] 373 | for (current_psi = best_psi - 5.0f; current_psi < old_best_psi + 5.0f; current_psi += 0.1f) | ~~~~~~~~~~~~~^~~~~~ src/core/matrix.cpp:329:23: note: 'best_psi' was declared here 329 | float best_psi; | ^~~~~~~~ g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-mrc_file.o `test -f 'src/core/mrc_file.cpp' || echo './'`src/core/mrc_file.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-tiff_file.o `test -f 'src/core/tiff_file.cpp' || echo './'`src/core/tiff_file.cpp In file included from src/core/core_headers.h:80, from src/core/mrc_header.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/mrc_file.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/tiff_file.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/tiff_file.cpp: In member function 'bool TiffFile::ReadLogicalDimensionsFromDisk()': src/core/tiff_file.cpp:108:76: warning: comparison of integer expressions of different signedness: 'int' and 'uint32' {aka 'unsigned int'} [-Wsign-compare] 108 | if (current_x != original_x || logical_dimension_y != current_y) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ src/core/tiff_file.cpp: In member function 'virtual void TiffFile::ReadSlicesFromDisk(int, int, float*)': src/core/tiff_file.cpp:149:80: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 149 | for (unsigned int directory_counter = start_slice-1; directory_counter < end_slice; directory_counter ++ ) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-dm_file.o `test -f 'src/core/dm_file.cpp' || echo './'`src/core/dm_file.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-image_file.o `test -f 'src/core/image_file.cpp' || echo './'`src/core/image_file.cpp src/core/tiff_file.cpp:186:96: warning: 'strip_counter' may be used uninitialized [-Wmaybe-uninitialized] 186 | number_of_bytes_placed_in_buffer = TIFFReadEncodedStrip(tif, strip_counter, (char *) buf, (tsize_t) -1); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/tiff_file.cpp:146:18: note: 'strip_counter' was declared here 146 | tstrip_t strip_counter; | ^~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-job_packager.o `test -f 'src/core/job_packager.cpp' || echo './'`src/core/job_packager.cpp In file included from src/core/core_headers.h:80, from src/core/dm_file.cpp:6: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/dm_file.cpp: In destructor 'DMFile::~DMFile()': src/core/dm_file.cpp:49:13: warning: statement has no effect [-Wunused-value] 49 | true; | ^ src/core/dm_file.cpp: In member function 'int DMFile::readDM(wxString, unsigned char*, bool, int)': src/core/dm_file.cpp:162:25: warning: statement is a reference, not call, to function 'abort' [-Waddress] 162 | abort; | ^~~~~ src/core/dm_file.cpp:162:25: warning: statement has no effect [-Wunused-value] src/core/dm_file.cpp: In member function 'int DMFile::readTagGroupWithVersion(std::ifstream*, unsigned char*, bool, int)': src/core/dm_file.cpp:303:76: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 303 | if ( sb ) std::cout << "Warning: Swapping header bytes" << endl; | ^~~~ In file included from src/core/core_headers.h:47: /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:304:56: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 304 | std::cout << "Version: " << version << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:305:64: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 305 | std::cout << "File length: " << file_length << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:306:62: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 306 | std::cout << "Endianness: " << endianness << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:318:78: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 318 | std::cout << "" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:319:151: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 319 | std::cout << "" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:320:59: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 320 | std::cout << "" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:334:69: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 334 | if ( show == 2 ) std::cout << "<" << buf << "/>" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:337:39: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 337 | if ( show == 1 ) std::cout << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:338:53: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 338 | if ( show == 2 ) std::cout << "" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp: In member function 'int DMFile::readTagGroupData(std::ifstream*, int, unsigned char*, bool)': src/core/dm_file.cpp:386:21: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 386 | for ( i=0; i" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:396:21: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 396 | for ( i=0; i" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp: In member function 'int DMFile::readTag(std::ifstream*, int, unsigned char*, bool, int&)': src/core/dm_file.cpp:429:49: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 429 | std::cout << "\tlen=" << len << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:430:63: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 430 | std::cerr << "Error: tag length too long!" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:445:30: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 445 | std::cout << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:446:29: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 446 | for ( i=0; i" << tag << "" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:473:47: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 473 | if ( show == 1 ) std::cout << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:484:45: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 484 | for ( i=0; i" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:492:45: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 492 | for ( i=0; i" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:499:45: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 499 | for ( i=0; i" << buf << "" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:509:45: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 509 | for ( i=0; i" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:517:53: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 517 | for ( i=0; i" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:526:53: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 526 | for ( i=0; i" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:555:45: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 555 | for ( i=0; i" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:559:86: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 559 | std::cerr << "Error: Data type " << dt << " not defined!" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:589:92: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 589 | if ( show == 1 ) std::cout << "\t" << tag << "=" << val << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:593:130: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 593 | if ( show == 1 ) std::cout << "\t" << tag << "=" << samplingX() << samplingY() << samplingZ() << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:598:92: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 598 | if ( show == 1 ) std::cout << "\t" << tag << "=" << val << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:602:113: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 602 | if ( show == 1 ) std::cout << "\t" << "\t" << "=" << arr[0] << "x" << arr[1] << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:605:113: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 605 | if ( show == 1 ) std::cout << "\t" << "\t" << "=" << arr[0] << "x" << arr[1] << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:612:83: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 612 | std::cout << "\t" << tag << "=" << val << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:613:111: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 613 | for ( i=0; i" << dvalue << "" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:664:79: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 664 | std::cout << "" << ivalue << "" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp: In member function 'int DMFile::dm3_type_length(int)': src/core/dm_file.cpp:687:99: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 687 | std::cerr << "Error: Data type " << dm3_type << " length not defined!" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp: In member function 'virtual bool DMFile::OpenFile(std::string, bool, bool)': src/core/dm_file.cpp:57:15: warning: 'fake_pointer' is used uninitialized [-Wuninitialized] 57 | readDM(wxString(wanted_filename), fake_pointer, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/dm_file.cpp:56:24: note: 'fake_pointer' was declared here 56 | unsigned char *fake_pointer; | ^~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/image_file.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/image_file.cpp: In member function 'virtual bool ImageFile::OpenFile(std::string, bool, bool)': src/core/image_file.cpp:58:158: warning: statement is a reference, not call, to function 'abort' [-Waddress] 58 | default: MyPrintWithDetails("Unsupported file type\n"); MyDebugAssertTrue(false,"Unsupported file type: %s\n",filename.GetFullPath().ToStdString()); abort; break; | ^~~~~ src/core/image_file.cpp:58:158: warning: statement has no effect [-Wunused-value] src/core/image_file.cpp: In member function 'virtual void ImageFile::ReadSlicesFromDisk(int, int, float*)': src/core/image_file.cpp:85:65: warning: statement is a reference, not call, to function 'abort' [-Waddress] 85 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~ src/core/image_file.cpp:85:65: warning: statement has no effect [-Wunused-value] src/core/image_file.cpp: In member function 'virtual void ImageFile::WriteSlicesToDisk(int, int, float*)': src/core/image_file.cpp:101:65: warning: statement is a reference, not call, to function 'abort' [-Waddress] 101 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~ src/core/image_file.cpp:101:65: warning: statement has no effect [-Wunused-value] src/core/image_file.cpp: In member function 'virtual int ImageFile::ReturnXSize()': src/core/image_file.cpp:113:65: warning: statement is a reference, not call, to function 'abort' [-Waddress] 113 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~ src/core/image_file.cpp:113:65: warning: statement has no effect [-Wunused-value] src/core/image_file.cpp: In member function 'virtual int ImageFile::ReturnYSize()': src/core/image_file.cpp:124:65: warning: statement is a reference, not call, to function 'abort' [-Waddress] 124 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~ src/core/image_file.cpp:124:65: warning: statement has no effect [-Wunused-value] src/core/image_file.cpp: In member function 'virtual int ImageFile::ReturnZSize()': src/core/image_file.cpp:135:65: warning: statement is a reference, not call, to function 'abort' [-Waddress] 135 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~ src/core/image_file.cpp:135:65: warning: statement has no effect [-Wunused-value] src/core/image_file.cpp: In member function 'virtual int ImageFile::ReturnNumberOfSlices()': src/core/image_file.cpp:146:65: warning: statement is a reference, not call, to function 'abort' [-Waddress] 146 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~ src/core/image_file.cpp:146:65: warning: statement has no effect [-Wunused-value] src/core/image_file.cpp: In member function 'virtual float ImageFile::ReturnPixelSize()': src/core/image_file.cpp:157:65: warning: statement is a reference, not call, to function 'abort' [-Waddress] 157 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~ src/core/image_file.cpp:157:65: warning: statement has no effect [-Wunused-value] src/core/image_file.cpp: In member function 'virtual bool ImageFile::IsOpen()': src/core/image_file.cpp:168:65: warning: statement is a reference, not call, to function 'abort' [-Waddress] 168 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~ src/core/image_file.cpp:168:65: warning: statement has no effect [-Wunused-value] src/core/dm_file.cpp: In member function 'int DMFile::readTag(std::ifstream*, int, unsigned char*, bool, int&)': src/core/dm_file.cpp:475:20: warning: 'dtarr' may be used uninitialized [-Wmaybe-uninitialized] 475 | dt = dtarr[0]; | ~~~^~~~~~~~~~ src/core/dm_file.cpp:414:69: note: 'dtarr' declared here 414 | size_t nnum, size(0), nstr, narr, nel, dt, dtarr[128], dtlen; // Change in v4 | ^~~~~ src/core/dm_file.cpp:566:55: warning: 'val' may be used uninitialized [-Wmaybe-uninitialized] 566 | datatype_from_dm3_type((DMDataType)val); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ src/core/dm_file.cpp:415:33: note: 'val' was declared here 415 | double val, arr[256]; | ^~~ In file included from src/core/core_headers.h:52: src/core/image_file.cpp: In member function 'virtual int ImageFile::ReturnXSize()': src/core/defines.h:25:65: warning: control reaches end of non-void function [-Wreturn-type] 25 | #define MyPrintWithDetails(...) {wxPrintf(__VA_ARGS__); wxPrintf("From %s:%i\n%s\n", __FILE__,__LINE__,__PRETTY_FUNCTION__);} | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/image_file.cpp:113:18: note: in expansion of macro 'MyPrintWithDetails' 113 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~~~~~~~~~~~~~~ src/core/image_file.cpp: In member function 'virtual int ImageFile::ReturnYSize()': src/core/defines.h:25:65: warning: control reaches end of non-void function [-Wreturn-type] 25 | #define MyPrintWithDetails(...) {wxPrintf(__VA_ARGS__); wxPrintf("From %s:%i\n%s\n", __FILE__,__LINE__,__PRETTY_FUNCTION__);} | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/image_file.cpp:124:18: note: in expansion of macro 'MyPrintWithDetails' 124 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~~~~~~~~~~~~~~ src/core/image_file.cpp: In member function 'virtual int ImageFile::ReturnZSize()': src/core/defines.h:25:65: warning: control reaches end of non-void function [-Wreturn-type] 25 | #define MyPrintWithDetails(...) {wxPrintf(__VA_ARGS__); wxPrintf("From %s:%i\n%s\n", __FILE__,__LINE__,__PRETTY_FUNCTION__);} | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/image_file.cpp:135:18: note: in expansion of macro 'MyPrintWithDetails' 135 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~~~~~~~~~~~~~~ src/core/image_file.cpp: In member function 'virtual int ImageFile::ReturnNumberOfSlices()': src/core/defines.h:25:65: warning: control reaches end of non-void function [-Wreturn-type] 25 | #define MyPrintWithDetails(...) {wxPrintf(__VA_ARGS__); wxPrintf("From %s:%i\n%s\n", __FILE__,__LINE__,__PRETTY_FUNCTION__);} | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/image_file.cpp:146:18: note: in expansion of macro 'MyPrintWithDetails' 146 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~~~~~~~~~~~~~~ src/core/image_file.cpp: In member function 'virtual float ImageFile::ReturnPixelSize()': src/core/defines.h:25:65: warning: control reaches end of non-void function [-Wreturn-type] 25 | #define MyPrintWithDetails(...) {wxPrintf(__VA_ARGS__); wxPrintf("From %s:%i\n%s\n", __FILE__,__LINE__,__PRETTY_FUNCTION__);} | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/image_file.cpp:157:18: note: in expansion of macro 'MyPrintWithDetails' 157 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~~~~~~~~~~~~~~ src/core/image_file.cpp: In member function 'virtual bool ImageFile::IsOpen()': src/core/defines.h:25:65: warning: control reaches end of non-void function [-Wreturn-type] 25 | #define MyPrintWithDetails(...) {wxPrintf(__VA_ARGS__); wxPrintf("From %s:%i\n%s\n", __FILE__,__LINE__,__PRETTY_FUNCTION__);} | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/image_file.cpp:168:18: note: in expansion of macro 'MyPrintWithDetails' 168 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-job_tracker.o `test -f 'src/core/job_tracker.cpp' || echo './'`src/core/job_tracker.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-run_profiles.o `test -f 'src/core/run_profiles.cpp' || echo './'`src/core/run_profiles.cpp In file included from src/core/core_headers.h:80, from src/core/job_packager.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp: In member function 'void JobPackage::SendJobPackage(wxSocketBase*)': src/core/job_packager.cpp:67:36: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 67 | for (counter = 0; counter < my_profile.executable_name.Length(); counter++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:88:36: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 88 | for (counter = 0; counter < my_profile.gui_address.Length(); counter++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:108:36: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 108 | for (counter = 0; counter < my_profile.controller_address.Length(); counter++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:14:13: warning: unused variable 'number_of_arguments' [-Wunused-variable] 14 | int number_of_arguments; | ^~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:16:13: warning: unused variable 'temp_job_number' [-Wunused-variable] 16 | int temp_job_number; | ^~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:55: src/core/job_packager.cpp: In member function 'void JobPackage::ReceiveJobPackage(wxSocketBase*)': src/core/socket_codes.h:6:42: warning: unused variable 'socket_input_buffer' [-Wunused-variable] 6 | #define SETUP_SOCKET_CODES unsigned char socket_input_buffer[SOCKET_CODE_SIZE]; | ^~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:348:9: note: in expansion of macro 'SETUP_SOCKET_CODES' 348 | SETUP_SOCKET_CODES | ^~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:358:13: warning: unused variable 'wanted_number_of_processes' [-Wunused-variable] 358 | int wanted_number_of_processes; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:365:13: warning: unused variable 'number_of_arguments' [-Wunused-variable] 365 | int number_of_arguments; | ^~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp: In member function 'void RunJob::SendJob(wxSocketBase*)': src/core/socket_codes.h:6:42: warning: unused variable 'socket_input_buffer' [-Wunused-variable] 6 | #define SETUP_SOCKET_CODES unsigned char socket_input_buffer[SOCKET_CODE_SIZE]; | ^~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:838:9: note: in expansion of macro 'SETUP_SOCKET_CODES' 838 | SETUP_SOCKET_CODES | ^~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp: In member function 'void RunJob::RecieveJob(wxSocketBase*)': src/core/socket_codes.h:6:42: warning: unused variable 'socket_input_buffer' [-Wunused-variable] 6 | #define SETUP_SOCKET_CODES unsigned char socket_input_buffer[SOCKET_CODE_SIZE]; | ^~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:1019:9: note: in expansion of macro 'SETUP_SOCKET_CODES' 1019 | SETUP_SOCKET_CODES | ^~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-myapp.o `test -f 'src/core/myapp.cpp' || echo './'`src/core/myapp.cpp src/core/job_packager.cpp:1051:60: warning: 'transfer_size' may be used uninitialized [-Wmaybe-uninitialized] 1051 | unsigned char *transfer_buffer = new unsigned char[transfer_size]; | ^~~~~~~~~~~~~ src/core/job_packager.cpp:1024:14: note: 'transfer_size' declared here 1024 | long transfer_size; | ^~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/job_tracker.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/job_tracker.cpp: In member function 'void JobTracker::MarkJobFinished()': src/core/job_tracker.cpp:62:14: warning: unused variable 'seconds_per_job_per_process_since_last_update' [-Wunused-variable] 62 | long seconds_per_job_per_process_since_last_update; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/job_tracker.cpp:63:14: warning: unused variable 'time_since_last_update' [-Wunused-variable] 63 | long time_since_last_update = current_time - last_update_time; | ^~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-empirical_distribution.o `test -f 'src/core/empirical_distribution.cpp' || echo './'`src/core/empirical_distribution.cpp In file included from src/core/core_headers.h:80, from src/core/run_profiles.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/myapp.cpp:2: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/myapp.cpp: In member function 'virtual bool MyApp::OnInit()': src/core/myapp.cpp:170:35: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 170 | for (counter = 0; counter < possible_controller_addresses.GetCount(); counter++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/myapp.cpp: In member function 'void MyApp::OnSlaveSocketEvent(wxSocketEvent&)': src/core/myapp.cpp:779:55: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 779 | for (int counter = 0; counter < temp_array.GetCount(); counter++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ src/core/myapp.cpp:664:16: warning: unused variable 'result' [-Wunused-variable] 664 | float *result; | ^~~~~~ g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-ctf.o `test -f 'src/core/ctf.cpp' || echo './'`src/core/ctf.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-numeric_text_file.o `test -f 'src/core/numeric_text_file.cpp' || echo './'`src/core/numeric_text_file.cpp In file included from src/core/core_headers.h:80, from src/core/empirical_distribution.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-progressbar.o `test -f 'src/core/progressbar.cpp' || echo './'`src/core/progressbar.cpp src/core/myapp.cpp: In member function 'virtual void* CalculateThread::Entry()': src/core/myapp.cpp:1612:17: warning: 'thread_action_copy' may be used uninitialized [-Wmaybe-uninitialized] 1612 | if (thread_action_copy == THREAD_START_NEXT_JOB) | ^~ src/core/myapp.cpp:1588:13: note: 'thread_action_copy' was declared here 1588 | int thread_action_copy; | ^~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/ctf.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-downhill_simplex.o `test -f 'src/core/downhill_simplex.cpp' || echo './'`src/core/downhill_simplex.cpp In file included from src/core/core_headers.h:80, from src/core/numeric_text_file.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/progressbar.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-brute_force_search.o `test -f 'src/core/brute_force_search.cpp' || echo './'`src/core/brute_force_search.cpp src/core/brute_force_search.cpp:246: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 246 | #pragma omp parallel for default(none) num_threads(numThreads) shared( all_values, all_local_best_values, all_scores,numThreads,num_iterations_completed,my_progress_bar) private(current_iteration, current_values, current_values_for_local_minimization, i, accuracy_for_local_minimization) | src/core/brute_force_search.cpp:257: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas] 257 | #pragma omp atomic | g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-va04.o `test -f 'src/core/va04.cpp' || echo './'`src/core/va04.cpp src/core/numeric_text_file.cpp: In member function 'void NumericTextFile::Init()': src/core/numeric_text_file.cpp:167:34: warning: 'current_records_per_line' may be used uninitialized [-Wmaybe-uninitialized] 167 | records_per_line = current_records_per_line; | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/numeric_text_file.cpp:106:21: note: 'current_records_per_line' was declared here 106 | int current_records_per_line; | ^~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-conjugate_gradient.o `test -f 'src/core/conjugate_gradient.cpp' || echo './'`src/core/conjugate_gradient.cpp In file included from src/core/core_headers.h:80, from src/core/downhill_simplex.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void DownhillSimplex::free_dmatrix(double**, long int, long int, long int, long int)', inlined from 'DownhillSimplex::~DownhillSimplex()' at src/core/downhill_simplex.cpp:25:15: src/core/downhill_simplex.cpp:327:35: warning: 'void free(void*)' called on pointer '*(double**)((char*))' with nonzero offset 8 [-Wfree-nonheap-object] 327 | for(i=nrh;i>=nrl;i--) free((char*) (m[i]+ncl)); | ~~~~^~~~~~~~~~~~~~~~~~~~ src/core/downhill_simplex.cpp:328:13: warning: 'void free(void*)' called on pointer '*this.DownhillSimplex::initial_values' with nonzero offset 4 [-Wfree-nonheap-object] 328 | free((char*) (m+nrl)); | ~~~~^~~~~~~~~~~~~~~~~ In member function 'void DownhillSimplex::free_dvector(double*, long int, long int)', inlined from 'double DownhillSimplex::amotry(double**, double*, double*, long int, double (*)(double*), long int, double)' at src/core/downhill_simplex.cpp:168:14: src/core/downhill_simplex.cpp:320:13: warning: 'void free(void*)' called on pointer '' with nonzero offset 8 [-Wfree-nonheap-object] 320 | free((char*) (v+nl)); | ~~~~^~~~~~~~~~~~~~~~ src/core/downhill_simplex.cpp: In member function 'double DownhillSimplex::amotry(double**, double*, double*, long int, double (*)(double*), long int, double)': src/core/downhill_simplex.cpp:156:17: note: returned from 'double* DownhillSimplex::dvector(long int, long int)' 156 | ptry=dvector(1,ndim); | ~~~~~~~^~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/brute_force_search.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/brute_force_search.cpp: In member function 'void BruteForceSearch::Run()': src/core/brute_force_search.cpp:180:25: warning: unused variable 'maxThreads' [-Wunused-variable] 180 | int numThreads, maxThreads = 12; | ^~~~~~~~~~ In member function 'void DownhillSimplex::free_dvector(double*, long int, long int)', inlined from 'void DownhillSimplex::amoeba(double**, double*, long int, double, double (*)(double*), long int*)' at src/core/downhill_simplex.cpp:91:14: src/core/downhill_simplex.cpp:320:13: warning: 'void free(void*)' called on pointer '' with nonzero offset 8 [-Wfree-nonheap-object] 320 | free((char*) (v+nl)); | ~~~~^~~~~~~~~~~~~~~~ src/core/downhill_simplex.cpp: In member function 'void DownhillSimplex::amoeba(double**, double*, long int, double, double (*)(double*), long int*)': src/core/downhill_simplex.cpp:42:17: note: returned from 'double* DownhillSimplex::dvector(long int, long int)' 42 | psum=dvector(1,ndim); | ~~~~~~~^~~~~~~~ In member function 'void DownhillSimplex::free_dvector(double*, long int, long int)', inlined from 'double DownhillSimplex::amotry(double**, double*, double*, long int, void*, double (*)(void*, double*), long int, double)' at src/core/downhill_simplex.cpp:190:14: src/core/downhill_simplex.cpp:320:13: warning: 'void free(void*)' called on pointer '' with nonzero offset 8 [-Wfree-nonheap-object] 320 | free((char*) (v+nl)); | ~~~~^~~~~~~~~~~~~~~~ src/core/downhill_simplex.cpp: In member function 'double DownhillSimplex::amotry(double**, double*, double*, long int, void*, double (*)(void*, double*), long int, double)': src/core/downhill_simplex.cpp:178:17: note: returned from 'double* DownhillSimplex::dvector(long int, long int)' 178 | ptry=dvector(1,ndim); | ~~~~~~~^~~~~~~~ In member function 'void DownhillSimplex::free_dvector(double*, long int, long int)', inlined from 'void DownhillSimplex::amoeba(double**, double*, long int, double, void*, double (*)(void*, double*), long int*)' at src/core/downhill_simplex.cpp:148:14: src/core/downhill_simplex.cpp:320:13: warning: 'void free(void*)' called on pointer '' with nonzero offset 8 [-Wfree-nonheap-object] 320 | free((char*) (v+nl)); | ~~~~^~~~~~~~~~~~~~~~ src/core/downhill_simplex.cpp: In member function 'void DownhillSimplex::amoeba(double**, double*, long int, double, void*, double (*)(void*, double*), long int*)': src/core/downhill_simplex.cpp:99:17: note: returned from 'double* DownhillSimplex::dvector(long int, long int)' 99 | psum=dvector(1,ndim); | ~~~~~~~^~~~~~~~ src/core/va04.cpp: In function 'int va04a_(int*, float*, float*, int*, float (*)(void*, float*), void*, float*, int*, int*, int*, float*)': src/core/va04.cpp:74:33: warning: empty parentheses were disambiguated as a function declaration [-Wvexing-parse] 74 | int s_wsfe(cilist *), e_wsfe(); | ^~ src/core/va04.cpp:74:33: note: remove parentheses to default-initialize a variable 74 | int s_wsfe(cilist *), e_wsfe(); | ^~ | -- src/core/va04.cpp:74:33: note: or replace parentheses with braces to value-initialize a variable src/core/va04.cpp:100:19: warning: unused variable 'io___32' [-Wunused-variable] 100 | static cilist io___32 = { 0, 6, 0, fmt_19, 0 }; | ^~~~~~~ src/core/va04.cpp:101:19: warning: unused variable 'io___42' [-Wunused-variable] 101 | static cilist io___42 = { 0, 6, 0, fmt_52, 0 }; | ^~~~~~~ src/core/va04.cpp:102:19: warning: unused variable 'io___45' [-Wunused-variable] 102 | static cilist io___45 = { 0, 6, 0, fmt_80, 0 }; | ^~~~~~~ src/core/brute_force_search.cpp:259:56: warning: 'my_progress_bar' may be used uninitialized [-Wmaybe-uninitialized] 259 | my_progress_bar->Update(num_iterations_completed); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/brute_force_search.cpp:181:22: note: 'my_progress_bar' was declared here 181 | ProgressBar *my_progress_bar; | ^~~~~~~~~~~~~~~ src/core/va04.cpp: At global scope: src/core/va04.cpp:21:12: warning: 'c__1' defined but not used [-Wunused-variable] 21 | static int c__1 = 1; | ^~~~ g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/programs/ctffind/ctffind-ctffind.o `test -f 'src/programs/ctffind/ctffind.cpp' || echo './'`src/programs/ctffind/ctffind.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-functions.o `test -f 'src/core/functions.cpp' || echo './'`src/core/functions.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-globals.o `test -f 'src/core/globals.cpp' || echo './'`src/core/globals.cpp In file included from src/core/core_headers.h:80, from src/core/conjugate_gradient.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/conjugate_gradient.cpp: In member function 'float ConjugateGradient::Run()': src/core/conjugate_gradient.cpp:72:13: warning: variable 'va04_success' set but not used [-Wunused-but-set-variable] 72 | int va04_success = 0; | ^~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-randomnumbergenerator.o `test -f 'src/core/randomnumbergenerator.cpp' || echo './'`src/core/randomnumbergenerator.cpp In file included from src/core/core_headers.h:80, from src/core/functions.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/functions.cpp: In function 'bool GetMRCDetails(const char*, int&, int&, int&)': src/core/functions.cpp:65:13: warning: variable 'success' set but not used [-Wunused-but-set-variable] 65 | int success; | ^~~~~~~ src/core/functions.cpp: In function 'void SplitFileIntoDirectoryAndFile(wxString&, wxString&, wxString&)': src/core/functions.cpp:571:59: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 571 | for (int directory_counter = 0; directory_counter < directories.GetCount(); directory_counter++) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ src/core/functions.cpp: In function 'int ReturnAppropriateNumberOfThreads(int)': src/core/functions.cpp:961:7: warning: unused variable 'physicalProcs' [-Wunused-variable] 961 | int physicalProcs = 0; | ^~~~~~~~~~~~~ src/core/functions.cpp:962:7: warning: unused variable 'logicalProcessorCount' [-Wunused-variable] 962 | int logicalProcessorCount = 0; | ^~~~~~~~~~~~~~~~~~~~~ src/core/functions.cpp:963:7: warning: unused variable 'processorCoreCount' [-Wunused-variable] 963 | int processorCoreCount = 0; | ^~~~~~~~~~~~~~~~~~ src/core/functions.cpp: At global scope: src/core/functions.cpp:782:12: warning: 'int numCoresAndLogicalProcs(int*, int*)' defined but not used [-Wunused-function] 782 | static int numCoresAndLogicalProcs(int *physical, int *logical) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from src/programs/ctffind/../../core/core_headers.h:80, from src/programs/ctffind/ctffind.cpp:1: src/programs/ctffind/../../core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/programs/ctffind/../../core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/../../core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/programs/ctffind/../../core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp: In member function 'virtual bool CtffindApp::DoCalculation()': src/programs/ctffind/ctffind.cpp:814:41: warning: unused variable 'boost_ring_contrast' [-Wunused-variable] 814 | const bool boost_ring_contrast = ! command_line_parser.FoundSwitch("fast"); | ^~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp: In function 'void OverlayCTF(Image*, CTF*, Image*, Image*, int, double*, double*, float*, float*, Curve*, Curve*)': src/programs/ctffind/ctffind.cpp:2316:15: warning: unused variable 'target_sigma' [-Wunused-variable] 2316 | float target_sigma; | ^~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:2317:13: warning: unused variable 'chosen_bin' [-Wunused-variable] 2317 | int chosen_bin; | ^~~~~~~~~~ src/programs/ctffind/ctffind.cpp: In function 'bool RescaleSpectrumAndRotationalAverage(Image*, Image*, Image*, int, double*, double*, double*, float*, float*, int, int)': src/programs/ctffind/ctffind.cpp:2447:15: warning: unused variable 'scale_factor' [-Wunused-variable] 2447 | float scale_factor; | ^~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp: In function 'void ComputeEquiPhaseAverageOfPowerSpectrum(Image*, CTF*, Curve*, Curve*)': src/programs/ctffind/ctffind.cpp:2630:23: warning: unused variable 'lowest_sq_freq_of_ctf_aberration_max' [-Wunused-variable] 2630 | float lowest_sq_freq_of_ctf_aberration_max = std::min( fabs(ctf->ReturnSquaredSpatialFrequencyOfPhaseShiftExtremumGivenDefocus(ctf->GetDefocus1())), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp: In function 'bool ComputeRotationalAverageOfPowerSpectrum(Image*, CTF*, Image*, Image*, int, double*, double*, double*, double*, float*, float*)': src/programs/ctffind/ctffind.cpp:2780:15: warning: variable 'ctf_diff_from_current_bin' set but not used [-Wunused-but-set-variable] 2780 | float ctf_diff_from_current_bin; | ^~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:2856:1: warning: no return statement in function returning non-void [-Wreturn-type] 2856 | } | ^ src/programs/ctffind/ctffind.cpp: In function 'bool RescaleSpectrumAndRotationalAverage(Image*, Image*, Image*, int, double*, double*, double*, float*, float*, int, int)': src/programs/ctffind/ctffind.cpp:2599:1: warning: control reaches end of non-void function [-Wreturn-type] 2599 | } | ^ src/programs/ctffind/ctffind.cpp: In function 'int ReturnSpectrumBinNumber(int, float*, Image*, long int, Image*, float*)': src/programs/ctffind/ctffind.cpp:2930:1: warning: control reaches end of non-void function [-Wreturn-type] 2930 | } | ^ In file included from src/core/core_headers.h:80, from src/core/globals.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-userinput.o `test -f 'src/core/userinput.cpp' || echo './'`src/core/userinput.cpp src/core/functions.cpp: In function 'wxString ReceivewxStringFromSocket(wxSocketBase*)': src/core/functions.cpp:191:77: warning: 'length_of_string' may be used uninitialized [-Wmaybe-uninitialized] 191 | unsigned char *transfer_buffer = new unsigned char[length_of_string + 1]; // + 1 for the terminating null character; | ~~~~~~~~~~~~~~~~~^~~ src/core/functions.cpp:181:13: note: 'length_of_string' declared here 181 | int length_of_string; | ^~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/randomnumbergenerator.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp: In function 'void ComputeFRCBetween1DSpectrumAndFit(int, double*, double*, float*, double*, double*, int)': src/programs/ctffind/ctffind.cpp:2222:51: warning: '*half_window_width[1]' may be used uninitialized [-Wmaybe-uninitialized] 2222 | half_window_width[0] = half_window_width[1]; | ~~~~~~~~~~~~~~~~~~~^ src/core/userinput.cpp:160:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 160 | wxPrintf(" Compiled : %s\n", __DATE__); | ^~~~~~~~ src/programs/ctffind/ctffind.cpp: In function 'bool RescaleSpectrumAndRotationalAverage(Image*, Image*, Image*, int, double*, double*, double*, float*, float*, int, int)': src/programs/ctffind/ctffind.cpp:2526:110: warning: 'normalisation_bin_number' may be used uninitialized [-Wmaybe-uninitialized] 2526 | actually_do_rescaling = (peak[normalisation_bin_number] - background[normalisation_bin_number]) > 0.0; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ src/programs/ctffind/ctffind.cpp:2439:13: note: 'normalisation_bin_number' was declared here 2439 | int normalisation_bin_number; | ^~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-curve.o `test -f 'src/core/curve.cpp' || echo './'`src/core/curve.cpp src/core/curve.cpp:1067:1: warning: "/*" within comment [-Wcomment] 1067 | /**************************************************************** | In file included from src/core/core_headers.h:80, from src/core/userinput.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/userinput.cpp: In member function 'void UserInput::Init(const char*, wxString)': src/core/userinput.cpp:157:35: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 157 | for (counter = 0; counter < strlen(program_name) / 2; counter++) wxPrintf(" "); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/userinput.cpp:159:35: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 159 | for (counter = 0; counter < strlen(program_name) / 2; counter++) wxPrintf(" "); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/userinput.cpp:161:35: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 161 | for (counter = 0; counter < strlen(program_name) / 2; counter++) wxPrintf(" "); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp: In member function 'virtual bool CtffindApp::DoCalculation()': src/programs/ctffind/ctffind.cpp:2029:101: warning: array subscript 0 is outside array bounds of 'double [0]' [-Warray-bounds=] 2029 | results_array[5] = pixel_size_for_fitting / spatial_frequency[last_bin_with_good_fit]; // The resolution (Angstroms) up to which Thon rings are well fit by the CTF | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ cc1plus: note: source object is likely at address zero src/programs/ctffind/ctffind.cpp:1875:164: warning: array subscript 0 is outside array bounds of 'double [0]' [-Warray-bounds=] 1875 | normalization_radius_max = std::max(normalization_radius_max,float(average_spectrum->logical_x_dimension * spatial_frequency[last_bin_with_good_fit])); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ cc1plus: note: source object is likely at address zero In file included from src/core/core_headers.h:80, from src/core/curve.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/curve.cpp: In member function 'float Curve::ReturnLinearInterpolationFromI(float)': src/core/curve.cpp:367:15: warning: unused variable 'distance' [-Wunused-variable] 367 | float distance; | ^~~~~~~~ src/core/curve.cpp: In function 'void LS_POLY(float*, float*, int, int, float*, float*)': src/core/curve.cpp:1246:16: warning: variable 'dd' set but not used [-Wunused-but-set-variable] 1246 | double dd; | ^~ src/programs/ctffind/ctffind.cpp:2008:120: warning: 'output_text_avrot' may be used uninitialized [-Wmaybe-uninitialized] 2008 | wxPrintf("Detailed results, including 1D fit profiles : %s\n",output_text_avrot->ReturnFilename()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ src/programs/ctffind/ctffind.cpp:856:34: note: 'output_text_avrot' was declared here 856 | NumericTextFile *output_text_avrot; | ^~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:2031:9: warning: 'last_bin_without_aliasing' may be used uninitialized [-Wmaybe-uninitialized] 2031 | if (last_bin_without_aliasing == 0) | ^~ src/programs/ctffind/ctffind.cpp:904:49: note: 'last_bin_without_aliasing' was declared here 904 | int last_bin_without_aliasing; | ^~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:969:98: warning: 'output_text' may be used uninitialized [-Wmaybe-uninitialized] 969 | wxPrintf("Results will be written to this file: %s\n",output_text->ReturnFilename()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ src/programs/ctffind/ctffind.cpp:855:34: note: 'output_text' was declared here 855 | NumericTextFile *output_text; | ^~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:1961:125: warning: 'my_progress_bar' may be used uninitialized [-Wmaybe-uninitialized] 1961 | if ( (!old_school_input) && number_of_micrographs > 1 && is_running_locally) my_progress_bar->Update(current_micrograph_number); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:854:42: note: 'my_progress_bar' was declared here 854 | ProgressBar *my_progress_bar; | ^~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:1157:25: warning: 'resampling_is_necessary' may be used uninitialized [-Wmaybe-uninitialized] 1157 | if (resampling_is_necessary) | ^~ src/programs/ctffind/ctffind.cpp:869:41: note: 'resampling_is_necessary' was declared here 869 | bool resampling_is_necessary; | ^~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:2072:33: warning: 'conjugate_gradient_minimizer' may be used uninitialized [-Wmaybe-uninitialized] 2072 | if (! defocus_is_known) delete conjugate_gradient_minimizer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:884:30: note: 'conjugate_gradient_minimizer' was declared here 884 | ConjugateGradient *conjugate_gradient_minimizer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:2022:26: warning: 'final_score' may be used uninitialized [-Wmaybe-uninitialized] 2022 | results_array[4] = final_score; // CTFFIND score | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:907:41: note: 'final_score' was declared here 907 | float final_score; | ^~~~~~~~~~~ src/core/curve.cpp: In member function 'float Curve::ReturnMode()': src/core/curve.cpp:444:16: warning: 'mode' may be used uninitialized [-Wmaybe-uninitialized] 444 | return mode; | ^~~~ src/core/curve.cpp:442:30: note: 'mode' was declared here 442 | float maximum_value, mode; | ^~~~ /bin/sh ./libtool --tag=CXX --mode=link g++ -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -L/usr/lib/arm-linux-gnueabihf -pthread -lwx_baseu-3.2 -lwx_baseu_net-3.2 -Wl,-z,relro -Wl,-z,now -o ctffind src/programs/ctffind/ctffind-ctffind.o src/core/ctffind-functions.o src/core/ctffind-globals.o src/core/ctffind-randomnumbergenerator.o src/core/ctffind-userinput.o src/core/ctffind-curve.o ctffind-image_trim.o src/core/ctffind-matrix.o src/core/ctffind-symmetry_matrix.o src/core/ctffind-abstract_image_file.o src/core/ctffind-mrc_header.o src/core/ctffind-mrc_file.o src/core/ctffind-tiff_file.o src/core/ctffind-dm_file.o src/core/ctffind-image_file.o src/core/ctffind-job_packager.o src/core/ctffind-job_tracker.o src/core/ctffind-run_profiles.o src/core/ctffind-myapp.o src/core/ctffind-empirical_distribution.o src/core/ctffind-ctf.o src/core/ctffind-numeric_text_file.o src/core/ctffind-progressbar.o src/core/ctffind-downhill_simplex.o src/core/ctffind-brute_force_search.o src/core/ctffind-va04.o src/core/ctffind-conjugate_gradient.o -ltiff -ljpeg -lz -ldl -lfftw3f libtool: link: g++ -I/usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -o ctffind src/programs/ctffind/ctffind-ctffind.o src/core/ctffind-functions.o src/core/ctffind-globals.o src/core/ctffind-randomnumbergenerator.o src/core/ctffind-userinput.o src/core/ctffind-curve.o ctffind-image_trim.o src/core/ctffind-matrix.o src/core/ctffind-symmetry_matrix.o src/core/ctffind-abstract_image_file.o src/core/ctffind-mrc_header.o src/core/ctffind-mrc_file.o src/core/ctffind-tiff_file.o src/core/ctffind-dm_file.o src/core/ctffind-image_file.o src/core/ctffind-job_packager.o src/core/ctffind-job_tracker.o src/core/ctffind-run_profiles.o src/core/ctffind-myapp.o src/core/ctffind-empirical_distribution.o src/core/ctffind-ctf.o src/core/ctffind-numeric_text_file.o src/core/ctffind-progressbar.o src/core/ctffind-downhill_simplex.o src/core/ctffind-brute_force_search.o src/core/ctffind-va04.o src/core/ctffind-conjugate_gradient.o -L/usr/lib/arm-linux-gnueabihf -lwx_baseu-3.2 -lwx_baseu_net-3.2 -ltiff -ljpeg -lz -ldl -lfftw3f -pthread make[1]: Leaving directory '/build/reproducible-path/ctffind-4.1.14' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/ctffind-4.1.14' no automatic installation make[1]: Leaving directory '/build/reproducible-path/ctffind-4.1.14' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: debian/ctffind/usr/bin/ctffind contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'ctffind' in '../ctffind_4.1.14-3_armhf.deb'. dpkg-deb: building package 'ctffind-dbgsym' in '../ctffind-dbgsym_4.1.14-3_armhf.deb'. dpkg-genbuildinfo --build=binary -O../ctffind_4.1.14-3_armhf.buildinfo dpkg-genchanges --build=binary -O../ctffind_4.1.14-3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/28705/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/28705/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/28705 and its subdirectories I: Current time: Fri Jul 19 21:44:31 +14 2024 I: pbuilder-time-stamp: 1721375071