I: pbuilder: network access will be disabled during build I: Current time: Tue Apr 30 14:34:35 +14 2024 I: pbuilder-time-stamp: 1714437275 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ann_1.1.2+doc-9.dsc] I: copying [./ann_1.1.2+doc.orig.tar.gz] I: copying [./ann_1.1.2+doc-9.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Oct 13 14:33:30 2022 gpgv: using RSA key D9B453B799B8830D945E6A0A5BF54E5E12B900BB gpgv: issuer "picca@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ann_1.1.2+doc-9.dsc: no acceptable signature found dpkg-source: info: extracting ann in ann-1.1.2+doc dpkg-source: info: unpacking ann_1.1.2+doc.orig.tar.gz dpkg-source: info: unpacking ann_1.1.2+doc-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying makefile-infloop-fix.diff dpkg-source: info: applying doc-makefile-clean.diff dpkg-source: info: applying autotools-files.diff dpkg-source: info: applying consider-pts-null.diff dpkg-source: info: applying annkFRSearch-default-argument.diff dpkg-source: info: applying clang-ftbfs.diff dpkg-source: info: applying 0007-update-autotools-file-for-the-cctbx-variant.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3405/tmp/hooks/D01_modify_environment starting debug: Running on virt64c. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Apr 30 00:34 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3405/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3405/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=21af9536d1384e80b532fa6d26a1c703 LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3405 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HeRW4zRC/pbuilderrc_RGDr --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HeRW4zRC/b2 --logfile b2/build.log ann_1.1.2+doc-9.dsc' SUDO_GID=113 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:3142/ I: uname -a Linux i-capture-the-hostname 6.1.0-20-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 25 07:43 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3405/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: autoconf, autoconf-archive, automake, debhelper-compat (= 13), libtool, python3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19440 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on autoconf; however: Package autoconf is not installed. pbuilder-satisfydepends-dummy depends on autoconf-archive; however: Package autoconf-archive is not installed. pbuilder-satisfydepends-dummy depends on automake; however: Package automake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libtool; however: Package libtool is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} autoconf-archive{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 44 newly installed, 0 to remove and 0 not upgraded. Need to get 24.5 MB of archives. After unpacking 96.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf autoconf-archive all 20220903-3 [775 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf libpython3.11-minimal armhf 3.11.9-1 [805 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf python3.11-minimal armhf 3.11.9-1 [1600 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf python3-minimal armhf 3.11.8-1 [26.3 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf tzdata all 2024a-3 [255 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf readline-common all 8.2-4 [69.3 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf libreadline8t64 armhf 8.2-4 [145 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf libpython3.11-stdlib armhf 3.11.9-1 [1704 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf python3.11 armhf 3.11.9-1 [602 kB] Get: 13 http://deb.debian.org/debian unstable/main armhf libpython3-stdlib armhf 3.11.8-1 [9332 B] Get: 14 http://deb.debian.org/debian unstable/main armhf python3 armhf 3.11.8-1 [27.4 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-3+b1 [1091 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40-8 [85.6 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.12.1-1 [1375 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf autoconf all 2.71-3 [332 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf autopoint all 0.21-14 [496 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-7 [517 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 37 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.191-1+b1 [183 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b3 [598 kB] Get: 41 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf debhelper all 13.15.3 [901 kB] Fetched 24.5 MB in 1s (37.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package autoconf-archive. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19440 files and directories currently installed.) Preparing to unpack .../autoconf-archive_20220903-3_all.deb ... Unpacking autoconf-archive (20220903-3) ... Selecting previously unselected package libpython3.11-minimal:armhf. Preparing to unpack .../libpython3.11-minimal_3.11.9-1_armhf.deb ... Unpacking libpython3.11-minimal:armhf (3.11.9-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.2-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_armhf.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:armhf (3.11.9-1) ... Setting up libexpat1:armhf (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20938 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_armhf.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-3_all.deb ... Unpacking tzdata (2024a-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../5-libreadline8t64_8.2-4_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:armhf. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_armhf.deb ... Unpacking libpython3.11-stdlib:armhf (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_armhf.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21930 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.8-1_armhf.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3_armhf.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-14+b1_armhf.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../06-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-3+b1_armhf.deb ... Unpacking groff-base (1.23.0-3+b1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40-8_armhf.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../09-libpipeline1_1.5.7-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.12.1-1_armhf.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../23-libelf1t64_0.191-1+b1_armhf.deb ... Unpacking libelf1t64:armhf (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../25-libicu72_72.1-4+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-4+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../26-libxml2_2.9.14+dfsg-1.3+b3_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-14+b1_armhf.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:armhf (1.5.7-2) ... Setting up libicu72:armhf (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:armhf (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up autoconf-archive (20220903-3) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:armhf (0.191-1+b1) ... Setting up tzdata (2024a-3) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Apr 30 00:35:40 UTC 2024. Universal Time is now: Tue Apr 30 00:35:40 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up readline-common (8.2-4) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libreadline8t64:armhf (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:armhf (3.11.9-1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:armhf (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Processing triggers for libc-bin (2.37-19) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.33-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/3405/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/3405/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/ann-1.1.2+doc/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ann_1.1.2+doc-9_source.changes dpkg-buildpackage: info: source package ann dpkg-buildpackage: info: source version 1.1.2+doc-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Picca Frédéric-Emmanuel dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_auto_clean make -j4 realclean make[1]: Entering directory '/build/reproducible-path/ann-1.1.2+doc' rm -f lib/* rm -f bin/* make -C src realclean make[2]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/src' rm -f *.o core make[2]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/src' make -C test realclean make[2]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/test' rm -f *.o *.out core make[2]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/test' make -C sample realclean make[2]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/sample' rm -f *.o *.out core make[2]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/sample' make -C ann2fig realclean make[2]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/ann2fig' rm -f *.o core make[2]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/ann2fig' make -C doc realclean make[2]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/doc' rm -f core *.aux *.dvi *.log *.blg *.bbl *.toc # Figs/ann.eps Figs/kd-tree.eps; rm -f ANNmanual.ps # (The following is intentionally omitted, beacuse it is part of # the distribution.) # -rm -f ANNmanual.pdf make[2]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/doc' make -C MS_Win32 realclean make[2]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/MS_Win32' rm -f -r ann2fig/Debug ann2fig/Release rm -f -r dll/Debug dll/Release rm -f -r sample/Debug sample/Release rm -f -r test/Debug test/Release rm -f Ann.ncb Ann.suo rm -f bin/* make[2]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/MS_Win32' make -C validate realclean make[2]: Entering directory '/build/reproducible-path/ann-1.1.2+doc' make[2]: *** validate: No such file or directory. Stop. make[2]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc' make[1]: [Makefile:89: realclean] Error 2 (ignored) make[1]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc' debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/ann-1.1.2+doc' # Restore upstream Makefiles for f in Makefile src/Makefile ann2fig/Makefile sample/Makefile test/Makefile ; do \ if [ -f $f-orig ] ; then mv $f-orig $f ; fi \ done dh_clean rm ann-cctbx rm: cannot remove 'ann-cctbx': No such file or directory make[1]: [debian/rules:29: override_dh_clean] Error 1 (ignored) make[1]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc' debian/rules build dh build dh_update_autotools_config debian/rules override_dh_autoreconf make[1]: Entering directory '/build/reproducible-path/ann-1.1.2+doc' # Save upstream Makefiles for f in Makefile src/Makefile ann2fig/Makefile sample/Makefile test/Makefile ; do \ if [ ! -f $f-orig ] ; then mv $f $f-orig ; fi \ done debian/cctbx Generating C++ files for self-inclusive approximate nearest neighbour Saved cctbx automake in ann-cctbx/Makefile.am dh_autoreconf libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'cfg'. libtoolize: copying file 'cfg/ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:24: warning: The macro `AC_DISABLE_FAST_INSTALL' is obsolete. configure.ac:24: You should run autoupdate. aclocal.m4:8906: AC_DISABLE_FAST_INSTALL is expanded from... configure.ac:24: the top level configure.ac:24: warning: AC_DISABLE_FAST_INSTALL: Remove this warning and the call to _LT_SET_OPTION when you put configure.ac:24: the 'disable-fast-install' option into LT_INIT's first parameter. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:8906: AC_DISABLE_FAST_INSTALL is expanded from... configure.ac:24: the top level configure.ac:25: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:25: You should run autoupdate. aclocal.m4:291: AC_PROG_LIBTOOL is expanded from... configure.ac:25: the top level configure.ac:28: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:28: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:28: the top level configure.ac:33: warning: The macro `AC_HEADER_TIME' is obsolete. configure.ac:33: You should run autoupdate. ./lib/autoconf/headers.m4:743: AC_HEADER_TIME is expanded from... configure.ac:33: the top level configure.ac:35: warning: The macro `AC_CXX_HAVE_STD' is obsolete. configure.ac:35: You should run autoupdate. aclocal.m4:48: AC_CXX_HAVE_STD is expanded from... configure.ac:35: the top level configure.ac:36: warning: The macro `AC_CXX_HAVE_STL' is obsolete. configure.ac:36: You should run autoupdate. aclocal.m4:92: AC_CXX_HAVE_STL is expanded from... configure.ac:36: the top level configure.ac:37: warning: The macro `AC_CXX_TYPENAME' is obsolete. configure.ac:37: You should run autoupdate. aclocal.m4:177: AC_CXX_TYPENAME is expanded from... configure.ac:37: the top level configure.ac:14: installing 'cfg/compile' configure.ac:25: installing 'cfg/config.guess' configure.ac:25: installing 'cfg/config.sub' configure.ac:6: installing 'cfg/install-sh' configure.ac:6: installing 'cfg/missing' ann-cctbx/Makefile.am: installing 'cfg/depcomp' make[1]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc' dh_auto_configure ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for egrep... (cached) /usr/bin/grep -E checking for an ANSI C-conforming const... yes checking for inline... inline checking for sys/time.h... yes checking whether struct tm is in sys/time.h or time.h... time.h checking whether the compiler implements namespaces... yes checking whether the compiler supports ISO C++ standard library... yes checking whether the compiler supports Standard Template Library... yes checking whether the compiler recognizes typename... yes checking whether gcc needs -traditional... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating include/Makefile config.status: creating ann2fig/Makefile config.status: creating sample/Makefile config.status: creating test/Makefile config.status: creating ann-cctbx/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build make -j4 make[1]: Entering directory '/build/reproducible-path/ann-1.1.2+doc' make all-recursive make[2]: Entering directory '/build/reproducible-path/ann-1.1.2+doc' Making all in src make[3]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/src' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o ANN.lo ANN.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o bd_fix_rad_search.lo bd_fix_rad_search.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o bd_pr_search.lo bd_pr_search.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o bd_search.lo bd_search.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c bd_pr_search.cpp -fPIC -DPIC -o .libs/bd_pr_search.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c bd_fix_rad_search.cpp -fPIC -DPIC -o .libs/bd_fix_rad_search.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c bd_search.cpp -fPIC -DPIC -o .libs/bd_search.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ANN.cpp -fPIC -DPIC -o .libs/ANN.o In file included from kd_fix_rad_search.h:30, from bd_fix_rad_search.cpp:26: pr_queue_k.h: In member function 'void ANNmin_k::insert(PQKkey, PQKinfo)': pr_queue_k.h:103:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 103 | register int i; | ^ ANN.cpp: In function 'ANNdist annDist(int, ANNpoint, ANNpoint)': ANN.cpp:51:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 51 | register int d; | ^ ANN.cpp:52:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 52 | register ANNcoord diff; | ^~~~ ANN.cpp:53:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | register ANNcoord dist; | ^~~~ In file included from kd_search.h:30, from bd_search.cpp:26: pr_queue_k.h: In member function 'void ANNmin_k::insert(PQKkey, PQKinfo)': pr_queue_k.h:103:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 103 | register int i; | ^ In file included from kd_pr_search.h:30, from bd_pr_search.cpp:26: pr_queue.h: In member function 'void ANNpr_queue::insert(PQkey, PQinfo)': pr_queue.h:89:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 89 | register int r = n; | ^ pr_queue.h:91:46: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 91 | register int p = r/2; | ^ pr_queue.h: In member function 'void ANNpr_queue::extr_min(PQkey&, void*&)': pr_queue.h:108:40: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 108 | register PQkey kn = pq[n--].key;// last item in queue | ^~ pr_queue.h:109:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 109 | register int p = 1; // p points to item out of position | ^ pr_queue.h:110:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 110 | register int r = p<<1; // left child of p | ^ In file included from kd_pr_search.h:31: pr_queue_k.h: In member function 'void ANNmin_k::insert(PQKkey, PQKinfo)': pr_queue_k.h:103:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 103 | register int i; | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c bd_fix_rad_search.cpp -o bd_fix_rad_search.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c bd_search.cpp -o bd_search.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c ANN.cpp -o ANN.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c bd_pr_search.cpp -o bd_pr_search.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o bd_tree.lo bd_tree.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c bd_tree.cpp -fPIC -DPIC -o .libs/bd_tree.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o brute.lo brute.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c brute.cpp -fPIC -DPIC -o .libs/brute.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o kd_dump.lo kd_dump.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o kd_fix_rad_search.lo kd_fix_rad_search.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c kd_dump.cpp -fPIC -DPIC -o .libs/kd_dump.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c kd_fix_rad_search.cpp -fPIC -DPIC -o .libs/kd_fix_rad_search.o In file included from brute.cpp:28: pr_queue_k.h: In member function 'void ANNmin_k::insert(PQKkey, PQKinfo)': pr_queue_k.h:103:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 103 | register int i; | ^ In file included from kd_fix_rad_search.h:30, from kd_fix_rad_search.cpp:25: pr_queue_k.h: In member function 'void ANNmin_k::insert(PQKkey, PQKinfo)': pr_queue_k.h:103:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 103 | register int i; | ^ kd_fix_rad_search.cpp: In member function 'virtual void ANNkd_leaf::ann_FR_search(ANNdist)': kd_fix_rad_search.cpp:150:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 150 | register ANNdist dist; // distance to data point | ^~~~ kd_fix_rad_search.cpp:151:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 151 | register ANNcoord* pp; // data coordinate pointer | ^~ kd_fix_rad_search.cpp:152:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 152 | register ANNcoord* qq; // query coordinate pointer | ^~ kd_fix_rad_search.cpp:153:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 153 | register ANNcoord t; | ^ kd_fix_rad_search.cpp:154:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 154 | register int d; | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c brute.cpp -o brute.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c bd_tree.cpp -o bd_tree.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c kd_fix_rad_search.cpp -o kd_fix_rad_search.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c kd_dump.cpp -o kd_dump.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o kd_pr_search.lo kd_pr_search.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c kd_pr_search.cpp -fPIC -DPIC -o .libs/kd_pr_search.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o kd_search.lo kd_search.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c kd_search.cpp -fPIC -DPIC -o .libs/kd_search.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o kd_split.lo kd_split.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c kd_split.cpp -fPIC -DPIC -o .libs/kd_split.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o kd_tree.lo kd_tree.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c kd_tree.cpp -fPIC -DPIC -o .libs/kd_tree.o In file included from kd_pr_search.h:30, from kd_pr_search.cpp:25: pr_queue.h: In member function 'void ANNpr_queue::insert(PQkey, PQinfo)': pr_queue.h:89:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 89 | register int r = n; | ^ pr_queue.h:91:46: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 91 | register int p = r/2; | ^ pr_queue.h: In member function 'void ANNpr_queue::extr_min(PQkey&, void*&)': pr_queue.h:108:40: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 108 | register PQkey kn = pq[n--].key;// last item in queue | ^~ pr_queue.h:109:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 109 | register int p = 1; // p points to item out of position | ^ pr_queue.h:110:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 110 | register int r = p<<1; // left child of p | ^ In file included from kd_pr_search.h:31: pr_queue_k.h: In member function 'void ANNmin_k::insert(PQKkey, PQKinfo)': pr_queue_k.h:103:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 103 | register int i; | ^ kd_pr_search.cpp: In member function 'virtual void ANNkd_leaf::ann_pri_search(ANNdist)': kd_pr_search.cpp:183:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 183 | register ANNdist dist; // distance to data point | ^~~~ kd_pr_search.cpp:184:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 184 | register ANNcoord* pp; // data coordinate pointer | ^~ kd_pr_search.cpp:185:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 185 | register ANNcoord* qq; // query coordinate pointer | ^~ kd_pr_search.cpp:186:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 186 | register ANNdist min_dist; // distance to k-th closest point | ^~~~~~~~ kd_pr_search.cpp:187:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 187 | register ANNcoord t; | ^ kd_pr_search.cpp:188:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 188 | register int d; | ^ In file included from kd_search.h:30, from kd_search.cpp:27: pr_queue_k.h: In member function 'void ANNmin_k::insert(PQKkey, PQKinfo)': pr_queue_k.h:103:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 103 | register int i; | ^ kd_search.cpp: In member function 'virtual void ANNkd_leaf::ann_search(ANNdist)': kd_search.cpp:174:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 174 | register ANNdist dist; // distance to data point | ^~~~ kd_search.cpp:175:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 175 | register ANNcoord* pp; // data coordinate pointer | ^~ kd_search.cpp:176:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 176 | register ANNcoord* qq; // query coordinate pointer | ^~ kd_search.cpp:177:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 177 | register ANNdist min_dist; // distance to k-th closest point | ^~~~~~~~ kd_search.cpp:178:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 178 | register ANNcoord t; | ^ kd_search.cpp:179:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 179 | register int d; | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c kd_pr_search.cpp -o kd_pr_search.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c kd_search.cpp -o kd_search.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c kd_split.cpp -o kd_split.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c kd_tree.cpp -o kd_tree.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o kd_util.lo kd_util.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c kd_util.cpp -fPIC -DPIC -o .libs/kd_util.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o perf.lo perf.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c perf.cpp -fPIC -DPIC -o .libs/perf.o kd_util.cpp: In function 'ANNdist annBoxDistance(ANNpoint, ANNpoint, ANNpoint, int)': kd_util.cpp:130:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 130 | register ANNdist dist = 0.0; // sum of squared distances | ^~~~ kd_util.cpp:131:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 131 | register ANNdist t; | ^ kd_util.cpp:133:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 133 | for (register int d = 0; d < dim; d++) { | ^ kd_util.cpp: In function 'void annMedianSplit(ANNpointArray, ANNidxArray, int, int, ANNcoord&, int)': kd_util.cpp:241:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 241 | register int i = (r+l)/2; // select middle as pivot | ^ kd_util.cpp:242:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 242 | register int k; | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c kd_util.cpp -o kd_util.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c perf.cpp -o perf.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -no-undefined -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libann.la -rpath /usr/lib/arm-linux-gnueabihf ANN.lo bd_fix_rad_search.lo bd_pr_search.lo bd_search.lo bd_tree.lo brute.lo kd_dump.lo kd_fix_rad_search.lo kd_pr_search.lo kd_search.lo kd_split.lo kd_tree.lo kd_util.lo perf.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o .libs/ANN.o .libs/bd_fix_rad_search.o .libs/bd_pr_search.o .libs/bd_search.o .libs/bd_tree.o .libs/brute.o .libs/kd_dump.o .libs/kd_fix_rad_search.o .libs/kd_pr_search.o .libs/kd_search.o .libs/kd_split.o .libs/kd_tree.o .libs/kd_util.o .libs/perf.o -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libann.so.0 -o .libs/libann.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libann.so.0" && ln -s "libann.so.0.0.0" "libann.so.0") libtool: link: (cd ".libs" && rm -f "libann.so" && ln -s "libann.so.0.0.0" "libann.so") libtool: link: ar cr .libs/libann.a ANN.o bd_fix_rad_search.o bd_pr_search.o bd_search.o bd_tree.o brute.o kd_dump.o kd_fix_rad_search.o kd_pr_search.o kd_search.o kd_split.o kd_tree.o kd_util.o perf.o libtool: link: ranlib .libs/libann.a libtool: link: ( cd ".libs" && rm -f "libann.la" && ln -s "../libann.la" "libann.la" ) make[3]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/src' Making all in include make[3]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/include' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/include' Making all in ann2fig make[3]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/ann2fig' g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o ann2fig.o ann2fig.cpp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o ann2fig ann2fig.o ../src/libann.la libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ann2fig ann2fig.o ../src/.libs/libann.so make[3]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/ann2fig' Making all in sample make[3]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/sample' g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o ann_sample.o ann_sample.cpp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o ann_sample ann_sample.o ../src/libann.la libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ann_sample ann_sample.o ../src/.libs/libann.so make[3]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/sample' Making all in test make[3]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/test' g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o ann_test.o ann_test.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o rand.o rand.cpp /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o ann_test ann_test.o rand.o ../src/libann.la libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ann_test ann_test.o rand.o ../src/.libs/libann.so make[3]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/test' Making all in ann-cctbx make[3]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/ann-cctbx' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_include/ANN.lo self_include/ANN.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_include/bd_fix_rad_search.lo self_include/bd_fix_rad_search.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_include/bd_pr_search.lo self_include/bd_pr_search.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_include/bd_search.lo self_include/bd_search.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/ANN.cpp -fPIC -DPIC -o self_include/.libs/ANN.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/bd_pr_search.cpp -fPIC -DPIC -o self_include/.libs/bd_pr_search.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/bd_fix_rad_search.cpp -fPIC -DPIC -o self_include/.libs/bd_fix_rad_search.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/bd_search.cpp -fPIC -DPIC -o self_include/.libs/bd_search.o In file included from self_include/kd_pr_search.h:30, from self_include/bd_pr_search.cpp:26: self_include/pr_queue.h: In member function 'void annself_include::ANNpr_queue::insert(annself_include::PQkey, annself_include::PQinfo)': self_include/pr_queue.h:90:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 90 | register int r = n; | ^ In file included from self_include/kd_fix_rad_search.h:30, from self_include/bd_fix_rad_search.cpp:26: self_include/pr_queue_k.h: In member function 'void annself_include::ANNmin_k::insert(annself_include::PQKkey, annself_include::PQKinfo)': self_include/pr_queue_k.h:104:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 104 | register int i; | ^ self_include/pr_queue.h:92:46: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 92 | register int p = r/2; | ^ self_include/pr_queue.h: In member function 'void annself_include::ANNpr_queue::extr_min(annself_include::PQkey&, void*&)': self_include/pr_queue.h:109:40: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 109 | register PQkey kn = pq[n--].key;// last item in queue | ^~ self_include/pr_queue.h:110:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 110 | register int p = 1; // p points to item out of position | ^ self_include/pr_queue.h:111:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 111 | register int r = p<<1; // left child of p | ^ In file included from self_include/kd_pr_search.h:31: self_include/pr_queue_k.h: In member function 'void annself_include::ANNmin_k::insert(annself_include::PQKkey, annself_include::PQKinfo)': self_include/pr_queue_k.h:104:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 104 | register int i; | ^ self_include/ANN.cpp: In function 'annself_include::ANNdist annself_include::annDist(int, ANNpoint, ANNpoint)': self_include/ANN.cpp:52:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 52 | register int d; | ^ self_include/ANN.cpp:53:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | register ANNcoord diff; | ^~~~ self_include/ANN.cpp:54:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | register ANNcoord dist; | ^~~~ In file included from self_include/kd_search.h:30, from self_include/bd_search.cpp:26: self_include/pr_queue_k.h: In member function 'void annself_include::ANNmin_k::insert(annself_include::PQKkey, annself_include::PQKinfo)': self_include/pr_queue_k.h:104:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 104 | register int i; | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/bd_fix_rad_search.cpp -o self_include/bd_fix_rad_search.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/bd_pr_search.cpp -o self_include/bd_pr_search.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/bd_search.cpp -o self_include/bd_search.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/ANN.cpp -o self_include/ANN.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_include/bd_tree.lo self_include/bd_tree.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_include/brute.lo self_include/brute.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/bd_tree.cpp -fPIC -DPIC -o self_include/.libs/bd_tree.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/brute.cpp -fPIC -DPIC -o self_include/.libs/brute.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_include/kd_dump.lo self_include/kd_dump.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/kd_dump.cpp -fPIC -DPIC -o self_include/.libs/kd_dump.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_include/kd_fix_rad_search.lo self_include/kd_fix_rad_search.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/kd_fix_rad_search.cpp -fPIC -DPIC -o self_include/.libs/kd_fix_rad_search.o In file included from self_include/brute.cpp:28: self_include/pr_queue_k.h: In member function 'void annself_include::ANNmin_k::insert(annself_include::PQKkey, annself_include::PQKinfo)': self_include/pr_queue_k.h:104:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 104 | register int i; | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/brute.cpp -o self_include/brute.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/bd_tree.cpp -o self_include/bd_tree.o >/dev/null 2>&1 In file included from self_include/kd_fix_rad_search.h:30, from self_include/kd_fix_rad_search.cpp:25: self_include/pr_queue_k.h: In member function 'void annself_include::ANNmin_k::insert(annself_include::PQKkey, annself_include::PQKinfo)': self_include/pr_queue_k.h:104:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 104 | register int i; | ^ self_include/kd_fix_rad_search.cpp: In member function 'virtual void annself_include::ANNkd_leaf::ann_FR_search(annself_include::ANNdist)': self_include/kd_fix_rad_search.cpp:151:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 151 | register ANNdist dist; // distance to data point | ^~~~ self_include/kd_fix_rad_search.cpp:152:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 152 | register ANNcoord* pp; // data coordinate pointer | ^~ self_include/kd_fix_rad_search.cpp:153:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 153 | register ANNcoord* qq; // query coordinate pointer | ^~ self_include/kd_fix_rad_search.cpp:154:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 154 | register ANNcoord t; | ^ self_include/kd_fix_rad_search.cpp:155:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 155 | register int d; | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/kd_fix_rad_search.cpp -o self_include/kd_fix_rad_search.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/kd_dump.cpp -o self_include/kd_dump.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_include/kd_pr_search.lo self_include/kd_pr_search.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/kd_pr_search.cpp -fPIC -DPIC -o self_include/.libs/kd_pr_search.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_include/kd_search.lo self_include/kd_search.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/kd_search.cpp -fPIC -DPIC -o self_include/.libs/kd_search.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_include/kd_split.lo self_include/kd_split.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/kd_split.cpp -fPIC -DPIC -o self_include/.libs/kd_split.o In file included from self_include/kd_pr_search.h:30, from self_include/kd_pr_search.cpp:25: self_include/pr_queue.h: In member function 'void annself_include::ANNpr_queue::insert(annself_include::PQkey, annself_include::PQinfo)': self_include/pr_queue.h:90:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 90 | register int r = n; | ^ self_include/pr_queue.h:92:46: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 92 | register int p = r/2; | ^ self_include/pr_queue.h: In member function 'void annself_include::ANNpr_queue::extr_min(annself_include::PQkey&, void*&)': self_include/pr_queue.h:109:40: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 109 | register PQkey kn = pq[n--].key;// last item in queue | ^~ self_include/pr_queue.h:110:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 110 | register int p = 1; // p points to item out of position | ^ self_include/pr_queue.h:111:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 111 | register int r = p<<1; // left child of p | ^ In file included from self_include/kd_pr_search.h:31: self_include/pr_queue_k.h: In member function 'void annself_include::ANNmin_k::insert(annself_include::PQKkey, annself_include::PQKinfo)': self_include/pr_queue_k.h:104:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 104 | register int i; | ^ self_include/kd_pr_search.cpp: In member function 'virtual void annself_include::ANNkd_leaf::ann_pri_search(annself_include::ANNdist)': self_include/kd_pr_search.cpp:184:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 184 | register ANNdist dist; // distance to data point | ^~~~ self_include/kd_pr_search.cpp:185:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 185 | register ANNcoord* pp; // data coordinate pointer | ^~ self_include/kd_pr_search.cpp:186:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 186 | register ANNcoord* qq; // query coordinate pointer | ^~ self_include/kd_pr_search.cpp:187:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 187 | register ANNdist min_dist; // distance to k-th closest point | ^~~~~~~~ self_include/kd_pr_search.cpp:188:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 188 | register ANNcoord t; | ^ self_include/kd_pr_search.cpp:189:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 189 | register int d; | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_include/kd_tree.lo self_include/kd_tree.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/kd_tree.cpp -fPIC -DPIC -o self_include/.libs/kd_tree.o In file included from self_include/kd_search.h:30, from self_include/kd_search.cpp:27: self_include/pr_queue_k.h: In member function 'void annself_include::ANNmin_k::insert(annself_include::PQKkey, annself_include::PQKinfo)': self_include/pr_queue_k.h:104:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 104 | register int i; | ^ self_include/kd_search.cpp: In member function 'virtual void annself_include::ANNkd_leaf::ann_search(annself_include::ANNdist)': self_include/kd_search.cpp:175:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 175 | register ANNdist dist; // distance to data point | ^~~~ self_include/kd_search.cpp:176:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 176 | register ANNcoord* pp; // data coordinate pointer | ^~ self_include/kd_search.cpp:177:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 177 | register ANNcoord* qq; // query coordinate pointer | ^~ self_include/kd_search.cpp:178:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 178 | register ANNdist min_dist; // distance to k-th closest point | ^~~~~~~~ self_include/kd_search.cpp:179:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 179 | register ANNcoord t; | ^ self_include/kd_search.cpp:180:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 180 | register int d; | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/kd_pr_search.cpp -o self_include/kd_pr_search.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/kd_search.cpp -o self_include/kd_search.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/kd_split.cpp -o self_include/kd_split.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_include/kd_util.lo self_include/kd_util.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/kd_tree.cpp -o self_include/kd_tree.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/kd_util.cpp -fPIC -DPIC -o self_include/.libs/kd_util.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_include/perf.lo self_include/perf.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/perf.cpp -fPIC -DPIC -o self_include/.libs/perf.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_exclude/ANN.lo self_exclude/ANN.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/ANN.cpp -fPIC -DPIC -o self_exclude/.libs/ANN.o self_include/kd_util.cpp: In function 'annself_include::ANNdist annself_include::annBoxDistance(ANNpoint, ANNpoint, ANNpoint, int)': self_include/kd_util.cpp:131:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 131 | register ANNdist dist = 0.0; // sum of squared distances | ^~~~ self_include/kd_util.cpp:132:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 132 | register ANNdist t; | ^ self_include/kd_util.cpp:134:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 134 | for (register int d = 0; d < dim; d++) { | ^ self_include/kd_util.cpp: In function 'void annself_include::annMedianSplit(ANNpointArray, ANNidxArray, int, int, ANNcoord&, int)': self_include/kd_util.cpp:242:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 242 | register int i = (r+l)/2; // select middle as pivot | ^ self_include/kd_util.cpp:243:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 243 | register int k; | ^ /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_exclude/bd_fix_rad_search.lo self_exclude/bd_fix_rad_search.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/perf.cpp -o self_include/perf.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/bd_fix_rad_search.cpp -fPIC -DPIC -o self_exclude/.libs/bd_fix_rad_search.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_include/kd_util.cpp -o self_include/kd_util.o >/dev/null 2>&1 self_exclude/ANN.cpp: In function 'annself_exclude::ANNdist annself_exclude::annDist(int, ANNpoint, ANNpoint)': self_exclude/ANN.cpp:52:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 52 | register int d; | ^ self_exclude/ANN.cpp:53:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | register ANNcoord diff; | ^~~~ self_exclude/ANN.cpp:54:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | register ANNcoord dist; | ^~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/ANN.cpp -o self_exclude/ANN.o >/dev/null 2>&1 In file included from self_exclude/kd_fix_rad_search.h:30, from self_exclude/bd_fix_rad_search.cpp:26: self_exclude/pr_queue_k.h: In member function 'void annself_exclude::ANNmin_k::insert(annself_exclude::PQKkey, annself_exclude::PQKinfo)': self_exclude/pr_queue_k.h:104:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 104 | register int i; | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/bd_fix_rad_search.cpp -o self_exclude/bd_fix_rad_search.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_exclude/bd_pr_search.lo self_exclude/bd_pr_search.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/bd_pr_search.cpp -fPIC -DPIC -o self_exclude/.libs/bd_pr_search.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_exclude/bd_search.lo self_exclude/bd_search.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/bd_search.cpp -fPIC -DPIC -o self_exclude/.libs/bd_search.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_exclude/bd_tree.lo self_exclude/bd_tree.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/bd_tree.cpp -fPIC -DPIC -o self_exclude/.libs/bd_tree.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_exclude/brute.lo self_exclude/brute.cpp In file included from self_exclude/kd_pr_search.h:30, from self_exclude/bd_pr_search.cpp:26: self_exclude/pr_queue.h: In member function 'void annself_exclude::ANNpr_queue::insert(annself_exclude::PQkey, annself_exclude::PQinfo)': self_exclude/pr_queue.h:90:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 90 | register int r = n; | ^ self_exclude/pr_queue.h:92:46: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 92 | register int p = r/2; | ^ self_exclude/pr_queue.h: In member function 'void annself_exclude::ANNpr_queue::extr_min(annself_exclude::PQkey&, void*&)': self_exclude/pr_queue.h:109:40: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 109 | register PQkey kn = pq[n--].key;// last item in queue | ^~ self_exclude/pr_queue.h:110:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 110 | register int p = 1; // p points to item out of position | ^ self_exclude/pr_queue.h:111:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 111 | register int r = p<<1; // left child of p | ^ In file included from self_exclude/kd_pr_search.h:31: self_exclude/pr_queue_k.h: In member function 'void annself_exclude::ANNmin_k::insert(annself_exclude::PQKkey, annself_exclude::PQKinfo)': self_exclude/pr_queue_k.h:104:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 104 | register int i; | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/brute.cpp -fPIC -DPIC -o self_exclude/.libs/brute.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/bd_pr_search.cpp -o self_exclude/bd_pr_search.o >/dev/null 2>&1 In file included from self_exclude/kd_search.h:30, from self_exclude/bd_search.cpp:26: self_exclude/pr_queue_k.h: In member function 'void annself_exclude::ANNmin_k::insert(annself_exclude::PQKkey, annself_exclude::PQKinfo)': self_exclude/pr_queue_k.h:104:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 104 | register int i; | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/bd_search.cpp -o self_exclude/bd_search.o >/dev/null 2>&1 In file included from self_exclude/brute.cpp:28: self_exclude/pr_queue_k.h: In member function 'void annself_exclude::ANNmin_k::insert(annself_exclude::PQKkey, annself_exclude::PQKinfo)': self_exclude/pr_queue_k.h:104:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 104 | register int i; | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/bd_tree.cpp -o self_exclude/bd_tree.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/brute.cpp -o self_exclude/brute.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_exclude/kd_dump.lo self_exclude/kd_dump.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/kd_dump.cpp -fPIC -DPIC -o self_exclude/.libs/kd_dump.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_exclude/kd_fix_rad_search.lo self_exclude/kd_fix_rad_search.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/kd_fix_rad_search.cpp -fPIC -DPIC -o self_exclude/.libs/kd_fix_rad_search.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_exclude/kd_pr_search.lo self_exclude/kd_pr_search.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_exclude/kd_search.lo self_exclude/kd_search.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/kd_pr_search.cpp -fPIC -DPIC -o self_exclude/.libs/kd_pr_search.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/kd_search.cpp -fPIC -DPIC -o self_exclude/.libs/kd_search.o In file included from self_exclude/kd_fix_rad_search.h:30, from self_exclude/kd_fix_rad_search.cpp:25: self_exclude/pr_queue_k.h: In member function 'void annself_exclude::ANNmin_k::insert(annself_exclude::PQKkey, annself_exclude::PQKinfo)': self_exclude/pr_queue_k.h:104:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 104 | register int i; | ^ self_exclude/kd_fix_rad_search.cpp: In member function 'virtual void annself_exclude::ANNkd_leaf::ann_FR_search(annself_exclude::ANNdist)': self_exclude/kd_fix_rad_search.cpp:151:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 151 | register ANNdist dist; // distance to data point | ^~~~ self_exclude/kd_fix_rad_search.cpp:152:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 152 | register ANNcoord* pp; // data coordinate pointer | ^~ self_exclude/kd_fix_rad_search.cpp:153:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 153 | register ANNcoord* qq; // query coordinate pointer | ^~ self_exclude/kd_fix_rad_search.cpp:154:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 154 | register ANNcoord t; | ^ self_exclude/kd_fix_rad_search.cpp:155:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 155 | register int d; | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/kd_dump.cpp -o self_exclude/kd_dump.o >/dev/null 2>&1 In file included from self_exclude/kd_pr_search.h:30, from self_exclude/kd_pr_search.cpp:25: self_exclude/pr_queue.h: In member function 'void annself_exclude::ANNpr_queue::insert(annself_exclude::PQkey, annself_exclude::PQinfo)': self_exclude/pr_queue.h:90:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 90 | register int r = n; | ^ self_exclude/pr_queue.h:92:46: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 92 | register int p = r/2; | ^ self_exclude/pr_queue.h: In member function 'void annself_exclude::ANNpr_queue::extr_min(annself_exclude::PQkey&, void*&)': self_exclude/pr_queue.h:109:40: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 109 | register PQkey kn = pq[n--].key;// last item in queue | ^~ self_exclude/pr_queue.h:110:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 110 | register int p = 1; // p points to item out of position | ^ self_exclude/pr_queue.h:111:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 111 | register int r = p<<1; // left child of p | ^ In file included from self_exclude/kd_pr_search.h:31: self_exclude/pr_queue_k.h: In member function 'void annself_exclude::ANNmin_k::insert(annself_exclude::PQKkey, annself_exclude::PQKinfo)': self_exclude/pr_queue_k.h:104:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 104 | register int i; | ^ self_exclude/kd_pr_search.cpp: In member function 'virtual void annself_exclude::ANNkd_leaf::ann_pri_search(annself_exclude::ANNdist)': self_exclude/kd_pr_search.cpp:184:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 184 | register ANNdist dist; // distance to data point | ^~~~ self_exclude/kd_pr_search.cpp:185:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 185 | register ANNcoord* pp; // data coordinate pointer | ^~ self_exclude/kd_pr_search.cpp:186:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 186 | register ANNcoord* qq; // query coordinate pointer | ^~ self_exclude/kd_pr_search.cpp:187:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 187 | register ANNdist min_dist; // distance to k-th closest point | ^~~~~~~~ self_exclude/kd_pr_search.cpp:188:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 188 | register ANNcoord t; | ^ self_exclude/kd_pr_search.cpp:189:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 189 | register int d; | ^ In file included from self_exclude/kd_search.h:30, from self_exclude/kd_search.cpp:27: self_exclude/pr_queue_k.h: In member function 'void annself_exclude::ANNmin_k::insert(annself_exclude::PQKkey, annself_exclude::PQKinfo)': self_exclude/pr_queue_k.h:104:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 104 | register int i; | ^ self_exclude/kd_search.cpp: In member function 'virtual void annself_exclude::ANNkd_leaf::ann_search(annself_exclude::ANNdist)': self_exclude/kd_search.cpp:175:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 175 | register ANNdist dist; // distance to data point | ^~~~ self_exclude/kd_search.cpp:176:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 176 | register ANNcoord* pp; // data coordinate pointer | ^~ self_exclude/kd_search.cpp:177:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 177 | register ANNcoord* qq; // query coordinate pointer | ^~ self_exclude/kd_search.cpp:178:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 178 | register ANNdist min_dist; // distance to k-th closest point | ^~~~~~~~ self_exclude/kd_search.cpp:179:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 179 | register ANNcoord t; | ^ self_exclude/kd_search.cpp:180:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 180 | register int d; | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/kd_fix_rad_search.cpp -o self_exclude/kd_fix_rad_search.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/kd_search.cpp -o self_exclude/kd_search.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/kd_pr_search.cpp -o self_exclude/kd_pr_search.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_exclude/kd_split.lo self_exclude/kd_split.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_exclude/kd_tree.lo self_exclude/kd_tree.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/kd_split.cpp -fPIC -DPIC -o self_exclude/.libs/kd_split.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_exclude/kd_util.lo self_exclude/kd_util.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/kd_tree.cpp -fPIC -DPIC -o self_exclude/.libs/kd_tree.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/kd_util.cpp -fPIC -DPIC -o self_exclude/.libs/kd_util.o /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o self_exclude/perf.lo self_exclude/perf.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/perf.cpp -fPIC -DPIC -o self_exclude/.libs/perf.o self_exclude/kd_util.cpp: In function 'annself_exclude::ANNdist annself_exclude::annBoxDistance(ANNpoint, ANNpoint, ANNpoint, int)': self_exclude/kd_util.cpp:131:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 131 | register ANNdist dist = 0.0; // sum of squared distances | ^~~~ self_exclude/kd_util.cpp:132:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 132 | register ANNdist t; | ^ self_exclude/kd_util.cpp:134:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 134 | for (register int d = 0; d < dim; d++) { | ^ self_exclude/kd_util.cpp: In function 'void annself_exclude::annMedianSplit(ANNpointArray, ANNidxArray, int, int, ANNcoord&, int)': self_exclude/kd_util.cpp:242:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 242 | register int i = (r+l)/2; // select middle as pivot | ^ self_exclude/kd_util.cpp:243:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 243 | register int k; | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/kd_tree.cpp -o self_exclude/kd_tree.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/kd_split.cpp -o self_exclude/kd_split.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/kd_util.cpp -o self_exclude/kd_util.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I../ann-cctbx/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c self_exclude/perf.cpp -o self_exclude/perf.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ann-1.1.2+doc=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -no-undefined -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libann-cctbx.la -rpath /usr/lib/arm-linux-gnueabihf self_include/ANN.lo self_include/bd_fix_rad_search.lo self_include/bd_pr_search.lo self_include/bd_search.lo self_include/bd_tree.lo self_include/brute.lo self_include/kd_dump.lo self_include/kd_fix_rad_search.lo self_include/kd_pr_search.lo self_include/kd_search.lo self_include/kd_split.lo self_include/kd_tree.lo self_include/kd_util.lo self_include/perf.lo self_exclude/ANN.lo self_exclude/bd_fix_rad_search.lo self_exclude/bd_pr_search.lo self_exclude/bd_search.lo self_exclude/bd_tree.lo self_exclude/brute.lo self_exclude/kd_dump.lo self_exclude/kd_fix_rad_search.lo self_exclude/kd_pr_search.lo self_exclude/kd_search.lo self_exclude/kd_split.lo self_exclude/kd_tree.lo self_exclude/kd_util.lo self_exclude/perf.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/13/crtbeginS.o self_include/.libs/ANN.o self_include/.libs/bd_fix_rad_search.o self_include/.libs/bd_pr_search.o self_include/.libs/bd_search.o self_include/.libs/bd_tree.o self_include/.libs/brute.o self_include/.libs/kd_dump.o self_include/.libs/kd_fix_rad_search.o self_include/.libs/kd_pr_search.o self_include/.libs/kd_search.o self_include/.libs/kd_split.o self_include/.libs/kd_tree.o self_include/.libs/kd_util.o self_include/.libs/perf.o self_exclude/.libs/ANN.o self_exclude/.libs/bd_fix_rad_search.o self_exclude/.libs/bd_pr_search.o self_exclude/.libs/bd_search.o self_exclude/.libs/bd_tree.o self_exclude/.libs/brute.o self_exclude/.libs/kd_dump.o self_exclude/.libs/kd_fix_rad_search.o self_exclude/.libs/kd_pr_search.o self_exclude/.libs/kd_search.o self_exclude/.libs/kd_split.o self_exclude/.libs/kd_tree.o self_exclude/.libs/kd_util.o self_exclude/.libs/perf.o -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libann-cctbx.so.0 -o .libs/libann-cctbx.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libann-cctbx.so.0" && ln -s "libann-cctbx.so.0.0.0" "libann-cctbx.so.0") libtool: link: (cd ".libs" && rm -f "libann-cctbx.so" && ln -s "libann-cctbx.so.0.0.0" "libann-cctbx.so") copying selected object files to avoid basename conflicts... libtool: link: ln self_exclude/ANN.o .libs/libann-cctbx.lax/lt1-ANN.o || cp self_exclude/ANN.o .libs/libann-cctbx.lax/lt1-ANN.o libtool: link: ln self_exclude/bd_fix_rad_search.o .libs/libann-cctbx.lax/lt2-bd_fix_rad_search.o || cp self_exclude/bd_fix_rad_search.o .libs/libann-cctbx.lax/lt2-bd_fix_rad_search.o libtool: link: ln self_exclude/bd_pr_search.o .libs/libann-cctbx.lax/lt3-bd_pr_search.o || cp self_exclude/bd_pr_search.o .libs/libann-cctbx.lax/lt3-bd_pr_search.o libtool: link: ln self_exclude/bd_search.o .libs/libann-cctbx.lax/lt4-bd_search.o || cp self_exclude/bd_search.o .libs/libann-cctbx.lax/lt4-bd_search.o libtool: link: ln self_exclude/bd_tree.o .libs/libann-cctbx.lax/lt5-bd_tree.o || cp self_exclude/bd_tree.o .libs/libann-cctbx.lax/lt5-bd_tree.o libtool: link: ln self_exclude/brute.o .libs/libann-cctbx.lax/lt6-brute.o || cp self_exclude/brute.o .libs/libann-cctbx.lax/lt6-brute.o libtool: link: ln self_exclude/kd_dump.o .libs/libann-cctbx.lax/lt7-kd_dump.o || cp self_exclude/kd_dump.o .libs/libann-cctbx.lax/lt7-kd_dump.o libtool: link: ln self_exclude/kd_fix_rad_search.o .libs/libann-cctbx.lax/lt8-kd_fix_rad_search.o || cp self_exclude/kd_fix_rad_search.o .libs/libann-cctbx.lax/lt8-kd_fix_rad_search.o libtool: link: ln self_exclude/kd_pr_search.o .libs/libann-cctbx.lax/lt9-kd_pr_search.o || cp self_exclude/kd_pr_search.o .libs/libann-cctbx.lax/lt9-kd_pr_search.o libtool: link: ln self_exclude/kd_search.o .libs/libann-cctbx.lax/lt10-kd_search.o || cp self_exclude/kd_search.o .libs/libann-cctbx.lax/lt10-kd_search.o libtool: link: ln self_exclude/kd_split.o .libs/libann-cctbx.lax/lt11-kd_split.o || cp self_exclude/kd_split.o .libs/libann-cctbx.lax/lt11-kd_split.o libtool: link: ln self_exclude/kd_tree.o .libs/libann-cctbx.lax/lt12-kd_tree.o || cp self_exclude/kd_tree.o .libs/libann-cctbx.lax/lt12-kd_tree.o libtool: link: ln self_exclude/kd_util.o .libs/libann-cctbx.lax/lt13-kd_util.o || cp self_exclude/kd_util.o .libs/libann-cctbx.lax/lt13-kd_util.o libtool: link: ln self_exclude/perf.o .libs/libann-cctbx.lax/lt14-perf.o || cp self_exclude/perf.o .libs/libann-cctbx.lax/lt14-perf.o libtool: link: ar cr .libs/libann-cctbx.a self_include/ANN.o self_include/bd_fix_rad_search.o self_include/bd_pr_search.o self_include/bd_search.o self_include/bd_tree.o self_include/brute.o self_include/kd_dump.o self_include/kd_fix_rad_search.o self_include/kd_pr_search.o self_include/kd_search.o self_include/kd_split.o self_include/kd_tree.o self_include/kd_util.o self_include/perf.o .libs/libann-cctbx.lax/lt1-ANN.o .libs/libann-cctbx.lax/lt2-bd_fix_rad_search.o .libs/libann-cctbx.lax/lt3-bd_pr_search.o .libs/libann-cctbx.lax/lt4-bd_search.o .libs/libann-cctbx.lax/lt5-bd_tree.o .libs/libann-cctbx.lax/lt6-brute.o .libs/libann-cctbx.lax/lt7-kd_dump.o .libs/libann-cctbx.lax/lt8-kd_fix_rad_search.o .libs/libann-cctbx.lax/lt9-kd_pr_search.o .libs/libann-cctbx.lax/lt10-kd_search.o .libs/libann-cctbx.lax/lt11-kd_split.o .libs/libann-cctbx.lax/lt12-kd_tree.o .libs/libann-cctbx.lax/lt13-kd_util.o .libs/libann-cctbx.lax/lt14-perf.o libtool: link: ranlib .libs/libann-cctbx.a libtool: link: rm -fr .libs/libann-cctbx.lax libtool: link: ( cd ".libs" && rm -f "libann-cctbx.la" && ln -s "../libann-cctbx.la" "libann-cctbx.la" ) make[3]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/ann-cctbx' make[3]: Entering directory '/build/reproducible-path/ann-1.1.2+doc' make[3]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc' make[2]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc' make[1]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/ann-1.1.2+doc' ( cd test ; \ ./ann_test < test1.in > /dev/null \ ./ann_test < test2.in > /dev/null ) dh_auto_test make -j4 check "TESTSUITEFLAGS=-j4 --verbose" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/ann-1.1.2+doc' Making check in src make[3]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/src' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/src' Making check in include make[3]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/include' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/include' Making check in ann2fig make[3]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/ann2fig' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/ann2fig' Making check in sample make[3]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/sample' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/sample' Making check in test make[3]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/test' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/test' Making check in ann-cctbx make[3]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/ann-cctbx' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/ann-cctbx' make[3]: Entering directory '/build/reproducible-path/ann-1.1.2+doc' make[3]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc' make[2]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc' make[1]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/ann-1.1.2\+doc/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/ann-1.1.2+doc' Making install in src make[2]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/src' make[3]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/src' /usr/bin/mkdir -p '/build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/sh ../libtool --mode=install /usr/bin/install -c libann.la '/build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/libann.so.0.0.0 /build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/lib/arm-linux-gnueabihf/libann.so.0.0.0 libtool: install: (cd /build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libann.so.0.0.0 libann.so.0 || { rm -f libann.so.0 && ln -s libann.so.0.0.0 libann.so.0; }; }) libtool: install: (cd /build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libann.so.0.0.0 libann.so || { rm -f libann.so && ln -s libann.so.0.0.0 libann.so; }; }) libtool: install: /usr/bin/install -c .libs/libann.lai /build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/lib/arm-linux-gnueabihf/libann.la libtool: install: /usr/bin/install -c .libs/libann.a /build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/lib/arm-linux-gnueabihf/libann.a libtool: install: chmod 644 /build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/lib/arm-linux-gnueabihf/libann.a libtool: install: ranlib /build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/lib/arm-linux-gnueabihf/libann.a libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/src' make[2]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/src' Making install in include make[2]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/include' make[3]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/include' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/include/ANN' /usr/bin/install -c -m 644 ANN/ANN.h ANN/ANNx.h ANN/ANNperf.h '/build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/include/ANN' make[3]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/include' make[2]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/include' Making install in ann2fig make[2]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/ann2fig' make[3]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/ann2fig' /usr/bin/mkdir -p '/build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/install -c ann2fig '/build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/bin' libtool: warning: '../src/libann.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/ann2fig /build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/bin/ann2fig make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/ann2fig' make[2]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/ann2fig' Making install in sample make[2]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/sample' make[3]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/sample' /usr/bin/mkdir -p '/build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/install -c ann_sample '/build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/bin' libtool: warning: '../src/libann.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/ann_sample /build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/bin/ann_sample make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/sample' make[2]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/sample' Making install in test make[2]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/test' make[3]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/test' /usr/bin/mkdir -p '/build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/install -c ann_test '/build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/bin' libtool: warning: '../src/libann.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/ann_test /build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/bin/ann_test make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/test' make[2]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/test' Making install in ann-cctbx make[2]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/ann-cctbx' make[3]: Entering directory '/build/reproducible-path/ann-1.1.2+doc/ann-cctbx' /usr/bin/mkdir -p '/build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/sh ../libtool --mode=install /usr/bin/install -c libann-cctbx.la '/build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/libann-cctbx.so.0.0.0 /build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/lib/arm-linux-gnueabihf/libann-cctbx.so.0.0.0 libtool: install: (cd /build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libann-cctbx.so.0.0.0 libann-cctbx.so.0 || { rm -f libann-cctbx.so.0 && ln -s libann-cctbx.so.0.0.0 libann-cctbx.so.0; }; }) libtool: install: (cd /build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libann-cctbx.so.0.0.0 libann-cctbx.so || { rm -f libann-cctbx.so && ln -s libann-cctbx.so.0.0.0 libann-cctbx.so; }; }) libtool: install: /usr/bin/install -c .libs/libann-cctbx.lai /build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/lib/arm-linux-gnueabihf/libann-cctbx.la libtool: install: /usr/bin/install -c .libs/libann-cctbx.a /build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/lib/arm-linux-gnueabihf/libann-cctbx.a libtool: install: chmod 644 /build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/lib/arm-linux-gnueabihf/libann-cctbx.a libtool: install: ranlib /build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/lib/arm-linux-gnueabihf/libann-cctbx.a libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /usr/bin/mkdir -p '/build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/include/ANNSELF_EXCLUDE' /usr/bin/install -c -m 644 include/ANNSELF_EXCLUDE/ANN.h include/ANNSELF_EXCLUDE/ANNx.h include/ANNSELF_EXCLUDE/ANNperf.h '/build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/include/ANNSELF_EXCLUDE' /usr/bin/mkdir -p '/build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/include/ANNSELF_INCLUDE' /usr/bin/install -c -m 644 include/ANNSELF_INCLUDE/ANN.h include/ANNSELF_INCLUDE/ANNx.h include/ANNSELF_INCLUDE/ANNperf.h '/build/reproducible-path/ann-1.1.2+doc/debian/tmp/usr/include/ANNSELF_INCLUDE' make[3]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/ann-cctbx' make[2]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc/ann-cctbx' make[2]: Entering directory '/build/reproducible-path/ann-1.1.2+doc' make[3]: Entering directory '/build/reproducible-path/ann-1.1.2+doc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc' make[2]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc' make[1]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc' dh_install dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/ann-1.1.2+doc' pod2man --center="User Commands" --release="ANN 1.1.2+doc" debian/ann2fig.pod > debian/ann2fig.1 pod2man --center="User Commands" --release="ANN 1.1.2+doc" debian/ann_sample.pod > debian/ann_sample.1 pod2man --center="User Commands" --release="ANN 1.1.2+doc" debian/ann_test.pod > debian/ann_test.1 dh_installman make[1]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc' dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/ann-1.1.2+doc' dh_compress -X.pdf make[1]: Leaving directory '/build/reproducible-path/ann-1.1.2+doc' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/ann-tools/usr/bin/ann_sample contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/ann-tools/usr/bin/ann2fig contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libann-dev' in '../libann-dev_1.1.2+doc-9_armhf.deb'. dpkg-deb: building package 'libann0-dbgsym' in '../libann0-dbgsym_1.1.2+doc-9_armhf.deb'. dpkg-deb: building package 'libann-cctbx0' in '../libann-cctbx0_1.1.2+doc-9_armhf.deb'. dpkg-deb: building package 'ann-tools-dbgsym' in '../ann-tools-dbgsym_1.1.2+doc-9_armhf.deb'. dpkg-deb: building package 'libann-cctbx0-dbgsym' in '../libann-cctbx0-dbgsym_1.1.2+doc-9_armhf.deb'. dpkg-deb: building package 'libann-cctbx-dev' in '../libann-cctbx-dev_1.1.2+doc-9_armhf.deb'. dpkg-deb: building package 'ann-tools' in '../ann-tools_1.1.2+doc-9_armhf.deb'. dpkg-deb: building package 'libann0' in '../libann0_1.1.2+doc-9_armhf.deb'. dpkg-genbuildinfo --build=binary -O../ann_1.1.2+doc-9_armhf.buildinfo dpkg-genchanges --build=binary -O../ann_1.1.2+doc-9_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3405/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3405/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3405 and its subdirectories I: Current time: Tue Apr 30 14:38:16 +14 2024 I: pbuilder-time-stamp: 1714437496